Query 032848
Match_columns 132
No_of_seqs 156 out of 647
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 2.1E-59 7.2E-64 345.3 8.0 132 1-132 1-136 (136)
2 2yfv_A Histone H3-like centrom 100.0 2.3E-48 7.7E-53 273.6 7.0 96 33-128 2-100 (100)
3 3nqu_A Histone H3-like centrom 100.0 3.9E-47 1.3E-51 280.6 8.0 106 24-131 28-136 (140)
4 3r45_A Histone H3-like centrom 100.0 5E-47 1.7E-51 283.7 6.5 106 24-131 44-152 (156)
5 2hue_B Histone H3; mini beta s 100.0 1.3E-37 4.4E-42 209.6 7.9 77 56-132 1-77 (77)
6 3nqj_A Histone H3-like centrom 100.0 4.1E-37 1.4E-41 209.3 7.8 75 57-131 2-78 (82)
7 2l5a_A Histone H3-like centrom 100.0 1.7E-33 5.9E-38 222.3 7.8 77 55-131 8-87 (235)
8 2ly8_A Budding yeast chaperone 99.9 1E-26 3.6E-31 168.1 8.6 73 58-130 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.8 2.4E-21 8.2E-26 126.3 5.8 64 59-127 3-66 (68)
10 1ku5_A HPHA, archaeal histon; 99.8 7.4E-19 2.5E-23 115.3 6.0 64 58-126 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.7 1.6E-16 5.4E-21 109.3 6.5 74 53-129 3-76 (93)
12 2nqb_D Histone H2B; nucleosome 99.4 1.1E-12 3.7E-17 94.7 7.0 65 60-128 31-99 (123)
13 1tzy_B Histone H2B; histone-fo 99.4 1.1E-12 3.8E-17 95.0 7.0 65 60-128 34-102 (126)
14 1id3_B Histone H4; nucleosome 99.3 2E-12 6.9E-17 90.6 6.3 70 56-130 26-95 (102)
15 1tzy_D Histone H4-VI; histone- 99.3 2.2E-12 7.4E-17 90.3 6.0 72 54-130 25-96 (103)
16 2yfw_B Histone H4, H4; cell cy 99.3 2E-12 6.8E-17 90.6 5.8 72 54-130 25-96 (103)
17 2hue_C Histone H4; mini beta s 99.3 1.9E-12 6.6E-17 87.6 4.6 72 54-130 6-77 (84)
18 1f1e_A Histone fold protein; a 99.2 1.1E-11 3.8E-16 92.6 6.5 69 54-127 78-146 (154)
19 3b0c_T CENP-T, centromere prot 99.2 2.8E-11 9.7E-16 85.9 7.7 70 56-130 5-74 (111)
20 3b0c_W CENP-W, centromere prot 99.2 2.7E-11 9.3E-16 80.3 6.2 68 57-128 3-70 (76)
21 1taf_B TFIID TBP associated fa 99.1 9.9E-11 3.4E-15 77.0 6.5 65 58-127 6-70 (70)
22 1f1e_A Histone fold protein; a 99.1 1E-10 3.5E-15 87.4 5.9 68 59-130 5-72 (154)
23 1taf_A TFIID TBP associated fa 99.0 6.8E-10 2.3E-14 72.6 7.3 63 66-129 5-67 (68)
24 3v9r_A MHF1, uncharacterized p 98.9 1.8E-09 6.1E-14 74.1 6.6 66 61-126 11-78 (90)
25 2jss_A Chimera of histone H2B. 98.9 2.4E-09 8.1E-14 82.2 7.9 65 60-128 1-69 (192)
26 4dra_A Centromere protein S; D 98.9 2.5E-09 8.6E-14 76.1 7.0 62 63-126 32-93 (113)
27 2byk_B Chrac-14; nucleosome sl 98.9 5.5E-09 1.9E-13 75.7 8.4 72 55-129 6-77 (128)
28 1jfi_B DR1 protein, transcript 98.9 3.4E-09 1.2E-13 80.9 7.4 74 52-129 9-82 (179)
29 3b0b_B CENP-S, centromere prot 98.9 3.1E-09 1.1E-13 75.1 5.8 66 62-127 19-86 (107)
30 3vh5_A CENP-S; histone fold, c 98.8 7.8E-09 2.7E-13 76.0 6.3 66 62-127 19-86 (140)
31 1n1j_B NF-YC; histone-like PAI 98.7 2E-08 6.7E-13 69.3 4.7 80 44-127 3-84 (97)
32 4g92_C HAPE; transcription fac 98.6 1.1E-07 3.9E-12 67.8 6.8 70 56-126 36-105 (119)
33 2f8n_G Core histone macro-H2A. 98.4 5.5E-07 1.9E-11 64.5 6.6 67 56-126 20-86 (120)
34 2l5a_A Histone H3-like centrom 98.4 7E-07 2.4E-11 70.5 7.6 54 77-130 175-228 (235)
35 2nqb_C Histone H2A; nucleosome 98.4 5.4E-07 1.8E-11 64.8 6.1 67 56-126 21-87 (123)
36 1tzy_A Histone H2A-IV; histone 98.4 6.8E-07 2.3E-11 64.8 6.1 67 56-126 23-89 (129)
37 1h3o_B Transcription initiatio 98.3 1.9E-06 6.4E-11 57.4 7.5 66 57-126 4-69 (76)
38 2f8n_K Histone H2A type 1; nuc 98.3 8.4E-07 2.9E-11 65.8 5.6 67 56-126 42-108 (149)
39 1f66_C Histone H2A.Z; nucleoso 98.3 1E-06 3.5E-11 63.8 5.5 68 56-126 25-92 (128)
40 1jfi_A Transcription regulator 98.3 9.7E-07 3.3E-11 60.9 4.9 64 62-126 12-75 (98)
41 1id3_C Histone H2A.1; nucleoso 98.3 8.2E-07 2.8E-11 64.5 4.7 67 56-126 23-89 (131)
42 2r10_A Chromatin structure-rem 98.1 2.8E-07 9.6E-12 76.2 -0.1 46 3-48 3-52 (361)
43 2jss_A Chimera of histone H2B. 98.1 5.2E-06 1.8E-10 63.5 6.3 68 56-126 103-170 (192)
44 2byk_A Chrac-16; nucleosome sl 97.9 1.7E-05 5.7E-10 58.1 5.8 65 61-126 19-84 (140)
45 2x4w_B Histone H3.2; transcrip 96.0 0.0026 9E-08 33.1 1.5 21 24-44 6-26 (26)
46 3a1b_A DNA (cytosine-5)-methyl 92.8 0.016 5.5E-07 43.1 -0.4 20 2-21 1-20 (159)
47 4dra_E Centromere protein X; D 92.6 0.65 2.2E-05 30.9 7.3 65 56-124 10-76 (84)
48 3b0b_C CENP-X, centromere prot 91.5 0.88 3E-05 30.0 6.9 64 58-124 8-72 (81)
49 1r4v_A Hypothetical protein AQ 86.5 1.1 3.6E-05 33.6 4.9 72 51-127 17-90 (171)
50 1wwi_A Hypothetical protein TT 84.5 1.4 4.9E-05 32.2 4.7 64 58-126 2-65 (148)
51 3ksy_A SOS-1, SON of sevenless 83.9 2.7 9.1E-05 38.8 7.3 66 56-126 102-167 (1049)
52 2ly8_A Budding yeast chaperone 78.3 1.9 6.6E-05 30.5 3.4 30 77-106 61-90 (121)
53 3v9r_B MHF2, uncharacterized p 77.1 2.1 7E-05 28.8 3.1 66 59-127 2-75 (88)
54 3uk6_A RUVB-like 2; hexameric 75.8 12 0.00042 28.8 7.8 51 77-127 275-329 (368)
55 3k1j_A LON protease, ATP-depen 72.0 18 0.00062 30.8 8.6 62 66-127 297-374 (604)
56 1g8p_A Magnesium-chelatase 38 69.2 17 0.00058 27.6 7.2 51 77-127 264-321 (350)
57 1h3o_A Transcription initiatio 67.0 6.3 0.00021 25.6 3.6 53 58-111 2-54 (75)
58 1bh9_B TAFII28; histone fold, 60.0 34 0.0012 22.5 8.1 65 59-128 17-82 (89)
59 3avr_B Histone H3; cupin super 56.7 6.7 0.00023 19.7 1.9 13 25-37 12-24 (26)
60 2v1u_A Cell division control p 52.1 50 0.0017 25.0 7.1 50 77-126 219-274 (387)
61 3kw6_A 26S protease regulatory 49.3 19 0.00064 22.1 3.5 30 97-126 42-71 (78)
62 2qby_A CDC6 homolog 1, cell di 47.6 87 0.003 23.5 8.5 49 77-125 215-269 (386)
63 2c9o_A RUVB-like 1; hexameric 45.7 65 0.0022 26.2 7.1 51 78-128 383-437 (456)
64 3bos_A Putative DNA replicatio 40.9 89 0.003 21.7 6.6 48 77-125 190-240 (242)
65 2chg_A Replication factor C sm 40.9 78 0.0027 21.4 6.0 47 78-126 178-224 (226)
66 2dzn_B 26S protease regulatory 39.9 32 0.0011 21.4 3.5 27 100-126 40-66 (82)
67 1njg_A DNA polymerase III subu 39.8 45 0.0015 22.9 4.7 48 77-125 201-248 (250)
68 1ixz_A ATP-dependent metallopr 39.0 27 0.00094 25.5 3.6 29 96-124 224-252 (254)
69 3vlf_B 26S protease regulatory 38.1 34 0.0012 21.7 3.5 30 97-126 40-69 (88)
70 3aji_B S6C, proteasome (prosom 34.7 39 0.0013 20.8 3.3 30 97-126 40-69 (83)
71 1lv7_A FTSH; alpha/beta domain 33.2 36 0.0012 24.9 3.4 32 96-127 220-251 (257)
72 2krk_A 26S protease regulatory 32.3 48 0.0016 21.0 3.5 73 36-126 7-79 (86)
73 2qby_B CDC6 homolog 3, cell di 32.2 1.6E+02 0.0056 22.2 7.3 47 78-126 216-268 (384)
74 2eqb_B RAB guanine nucleotide 31.0 47 0.0016 22.4 3.3 31 85-115 48-78 (97)
75 1jr3_D DNA polymerase III, del 30.9 89 0.0031 23.8 5.5 64 63-128 146-209 (343)
76 1iy2_A ATP-dependent metallopr 28.9 49 0.0017 24.6 3.5 30 96-125 248-277 (278)
77 1eoq_A GAG polyprotein capsid 28.5 63 0.0021 21.8 3.6 17 60-76 7-23 (96)
78 1fnn_A CDC6P, cell division co 27.2 2E+02 0.0069 21.6 8.5 49 78-126 212-272 (389)
79 4b4t_I 26S protease regulatory 25.0 62 0.0021 27.2 3.7 32 95-126 390-421 (437)
80 3ts9_A Interferon-induced heli 24.6 1.2E+02 0.004 21.7 4.6 17 60-76 6-22 (138)
81 3h4m_A Proteasome-activating n 22.2 1.8E+02 0.0061 21.1 5.6 31 96-126 226-256 (285)
82 4b4t_J 26S protease regulatory 22.1 79 0.0027 26.1 3.8 32 95-126 356-387 (405)
83 3ksy_A SOS-1, SON of sevenless 22.1 83 0.0028 28.9 4.3 41 62-108 21-61 (1049)
84 4b4t_K 26S protease regulatory 21.8 76 0.0026 26.2 3.7 32 95-126 381-412 (428)
85 2e7s_A RAB guanine nucleotide 21.5 83 0.0028 22.4 3.3 30 86-115 69-98 (135)
86 2dsy_A Hypothetical protein TT 21.4 87 0.003 19.9 3.2 21 83-103 47-67 (87)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=2.1e-59 Score=345.28 Aligned_cols=132 Identities=96% Similarity=1.340 Sum_probs=93.8
Q ss_pred CCCccccccccCCCCCCCccccc----CCCCCCCCCCCCcccCCCchhhHHHHhhhhhhhhhcccchhHHHHHHHHHhcc
Q 032848 1 MARTKQTARKSTGGKAPRKQLAT----KSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK 76 (132)
Q Consensus 1 MARtk~~a~ks~g~kaprk~~~~----k~~~~~~~~k~~~r~~~g~~~l~eIr~~q~st~llipk~pF~rlvreI~~~~~ 76 (132)
||||||+|++++||++|++++++ |+.|..++++++++|+||+++|+|||+||+||+||||++||+||||||++++.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999876 56677788899999999999999999999999999999999999999999999
Q ss_pred cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcccC
Q 032848 77 TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 132 (132)
Q Consensus 77 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~~ 132 (132)
+++|||++|+++|||++|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=2.3e-48 Score=273.61 Aligned_cols=96 Identities=65% Similarity=1.004 Sum_probs=67.0
Q ss_pred CCCcccCCCchhhHHHHhhhhhhhhhcccchhHHHHHHHHHhccc---CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032848 33 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAI 109 (132)
Q Consensus 33 k~~~r~~~g~~~l~eIr~~q~st~llipk~pF~rlvreI~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~ 109 (132)
+++++|+||+++|+|||+||+||++|||++||+||||||.+++.+ ++|||++|+++||||+|+|||+||||||+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999976 89999999999999999999999999999999
Q ss_pred hcCccccChhhHHHHHHHh
Q 032848 110 HAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 110 HakRvTi~~~Diqla~ri~ 128 (132)
||||||||++|||||++||
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999986
No 3
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=3.9e-47 Score=280.64 Aligned_cols=106 Identities=59% Similarity=0.888 Sum_probs=72.8
Q ss_pred CCCCCCCCCCCC-cccCCCchhhHHHHhhhhhhhhhcccchhHHHHHHHHHhcc--cCcccCHHHHHHHHHHHHHHHHHH
Q 032848 24 KSAPTTGGVKKP-HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGL 100 (132)
Q Consensus 24 k~~~~~~~~k~~-~r~~~g~~~l~eIr~~q~st~llipk~pF~rlvreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~l 100 (132)
+++|..|+++++ ++|+||+ |+|||+||+||+|||||+||+|||+||.+++. .++|||++|+++||||+|+|||+|
T Consensus 28 ~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~L 105 (140)
T 3nqu_A 28 RRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHL 105 (140)
T ss_dssp ---------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHH
Confidence 677777776655 5899998 99999999999999999999999999999997 589999999999999999999999
Q ss_pred HHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032848 101 FEDTNLCAIHAKRVTIMPKDIQLARRIRGER 131 (132)
Q Consensus 101 fe~a~~~a~HakRvTi~~~Diqla~ri~~~~ 131 (132)
|||||+||+||||||||++|||||++|||+.
T Consensus 106 FEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 106 FEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 9999999999999999999999999999974
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=5e-47 Score=283.70 Aligned_cols=106 Identities=59% Similarity=0.888 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCC-cccCCCchhhHHHHhhhhhhhhhcccchhHHHHHHHHHhcc--cCcccCHHHHHHHHHHHHHHHHHH
Q 032848 24 KSAPTTGGVKKP-HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGL 100 (132)
Q Consensus 24 k~~~~~~~~k~~-~r~~~g~~~l~eIr~~q~st~llipk~pF~rlvreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~l 100 (132)
+++|..|+++++ ++|+||+ |+|||+||+||+|||||+||+|||+||.+++. .++|||++|+++||||+|+|||+|
T Consensus 44 ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~L 121 (156)
T 3r45_A 44 RRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHL 121 (156)
T ss_dssp ---------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHH
Confidence 677777777655 7899998 99999999999999999999999999999997 589999999999999999999999
Q ss_pred HHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032848 101 FEDTNLCAIHAKRVTIMPKDIQLARRIRGER 131 (132)
Q Consensus 101 fe~a~~~a~HakRvTi~~~Diqla~ri~~~~ 131 (132)
|||||+||+||||||||++|||||++|||+.
T Consensus 122 FEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 122 FEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 9999999999999999999999999999974
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=1.3e-37 Score=209.63 Aligned_cols=77 Identities=92% Similarity=1.273 Sum_probs=74.0
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcccC
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 132 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~~ 132 (132)
++||||+||+||||||++++.+++|||++|+++|||++|+||++||||+|+||+||||||||++|||||++|||+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999864
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=209.32 Aligned_cols=75 Identities=65% Similarity=0.984 Sum_probs=71.5
Q ss_pred hhcccchhHHHHHHHHHhcc--cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032848 57 LLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 131 (132)
Q Consensus 57 llipk~pF~rlvreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~ 131 (132)
|||||+||+||||||.+++. .++|||++|+.+||||+|+|||+||||||+||+||||||||++|||||++|||++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 78999999999999999997 5899999999999999999999999999999999999999999999999999985
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=222.28 Aligned_cols=77 Identities=68% Similarity=1.029 Sum_probs=72.3
Q ss_pred hhhhcccchhHHHHHHHHHhccc---CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032848 55 TELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 131 (132)
Q Consensus 55 t~llipk~pF~rlvreI~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~ 131 (132)
..+||||+||+||||||++++.+ ++|||++|+.|||||+|+|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 36999999999999999999975 899999999999999999999999999999999999999999999999999985
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-26 Score=168.05 Aligned_cols=73 Identities=58% Similarity=0.883 Sum_probs=69.2
Q ss_pred hcccchhHHHHHHHHHhccc---CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------
Q 032848 58 LIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH------------------------ 110 (132)
Q Consensus 58 lipk~pF~rlvreI~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~H------------------------ 110 (132)
||||+||+||||||++++.+ ++|||++|+.+||||+|+|||+||||+|+||+|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 79999999999999999976 899999999999999999999999999999886
Q ss_pred --------------cCccccChhhHHHHHHHhcc
Q 032848 111 --------------AKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 111 --------------akRvTi~~~Diqla~ri~~~ 130 (132)
++|+||+..||.+|.+..|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 58999999999999998885
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.84 E-value=2.4e-21 Score=126.27 Aligned_cols=64 Identities=28% Similarity=0.362 Sum_probs=61.8
Q ss_pred cccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 59 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 59 ipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
||++||.|+++++ ++.+||.+|+++||+++|.|++.||++|+.||.|+||+||+++||++|++.
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7999999999999 789999999999999999999999999999999999999999999999864
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.76 E-value=7.4e-19 Score=115.26 Aligned_cols=64 Identities=30% Similarity=0.357 Sum_probs=61.5
Q ss_pred hcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 58 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 58 lipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.||++||.||+|+. +..|||++|+++|||++|.|+.++++||+.+|.|+||+||+++||+||.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 48999999999997 78999999999999999999999999999999999999999999999974
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.65 E-value=1.6e-16 Score=109.28 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=65.1
Q ss_pred hhhhhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032848 53 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129 (132)
Q Consensus 53 ~st~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~ 129 (132)
+++++.||+++|.|++++++. .+.+||.+|..+||+++|.|+..|+++|+.+|.|++|+||+.+||..|++-.|
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 76 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 356899999999999999843 46899999999999999999999999999999999999999999999987544
No 12
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.37 E-value=1.1e-12 Score=94.70 Aligned_cols=65 Identities=25% Similarity=0.359 Sum_probs=60.6
Q ss_pred ccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcCccccChhhHHHHHHHh
Q 032848 60 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFED----TNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 60 pk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~----a~~~a~HakRvTi~~~Diqla~ri~ 128 (132)
++..|..||+.|+.++++|.+||++|+..| ++|++|+||. |..++.|++|.||+.+|||.|++|.
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~Im----nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIM----NSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 567899999999999999999999999999 8888888887 9999999999999999999999985
No 13
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.36 E-value=1.1e-12 Score=94.99 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=60.9
Q ss_pred ccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcCccccChhhHHHHHHHh
Q 032848 60 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFED----TNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 60 pk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~----a~~~a~HakRvTi~~~Diqla~ri~ 128 (132)
++..|..||+.|+.++++|.+||++|+..| ++|++|+||. |..++.|++|.||+.+|||.|++|.
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~Im----nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIM----NSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 668899999999999999999999999999 8888888887 9999999999999999999999985
No 14
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.33 E-value=2e-12 Score=90.58 Aligned_cols=70 Identities=23% Similarity=0.242 Sum_probs=65.6
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 130 (132)
..-||+.|..||.+.. +..|++.+|.++|++..|.|+.++.+||+.+|.|++|.||+.+||.+|.+-.|+
T Consensus 26 i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 26 IQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp GGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 4459999999999887 778999999999999999999999999999999999999999999999998775
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.32 E-value=2.2e-12 Score=90.32 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=65.7
Q ss_pred hhhhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032848 54 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 54 st~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 130 (132)
+...-||+.+..||.+.. +..||+.+|.++|++..|.|+.++.++|..+|.|++|.||+++||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp CGGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hhcccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 334449999999999877 567999999999999999999999999999999999999999999999998775
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.32 E-value=2e-12 Score=90.56 Aligned_cols=72 Identities=22% Similarity=0.237 Sum_probs=63.0
Q ss_pred hhhhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032848 54 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 54 st~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 130 (132)
+...-||+.+..||.+.. +..||+.+|.++|++..|.|+.++.++|..+|.|++|.||+++||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp -----CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred hhhccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 333449999999999876 568999999999999999999999999999999999999999999999998775
No 17
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.30 E-value=1.9e-12 Score=87.56 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=66.0
Q ss_pred hhhhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032848 54 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 54 st~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 130 (132)
....-||+.+..||.+.. +..|++.+|.++|++..|.|+.++.++|..+|.|++|.||+..||.+|.+-.|+
T Consensus 6 ~~~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 6 DNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp GGCCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred ccCCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 334559999999999887 779999999999999999999999999999999999999999999999987765
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.24 E-value=1.1e-11 Score=92.62 Aligned_cols=69 Identities=19% Similarity=0.064 Sum_probs=65.3
Q ss_pred hhhhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 54 STELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 54 st~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
.-++.||++|..|++|+. +..|+|.+|.++|+++.|.|+..+.++|+.+|.|++|+||+++||++|.+.
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 346789999999999998 889999999999999999999999999999999999999999999999875
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.23 E-value=2.8e-11 Score=85.85 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=61.6
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 130 (132)
++-||+....||+++. +..+|+.++.++|+++++.|+..+..||+..|.||||.||+.+||.++.+-.|.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 5679999999998888 789999999999999999999999999999999999999999999999987664
No 20
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.20 E-value=2.7e-11 Score=80.34 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=62.0
Q ss_pred hhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHh
Q 032848 57 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 57 llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~ 128 (132)
..+|++++.|+++++. ++.+++.+|.++|++++|.|+..|-..|+..|.|.+|.||+.+||+.|.+..
T Consensus 3 ~~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3589999999998873 4789999999999999999999999999999999999999999999998753
No 21
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.14 E-value=9.9e-11 Score=77.05 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=60.8
Q ss_pred hcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 58 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 58 lipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
.+|..|+.++...+ +-.+++.+|...|-+-.|.++.++.++|..++.|+||.||+.+||.+|.++
T Consensus 6 ~lp~~~v~~iaes~-----Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 6 SISAESMKVIAESI-----GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp CCCHHHHHHHHHHT-----TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 58999999999888 778999999999999999999999999999999999999999999999753
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.10 E-value=1e-10 Score=87.37 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=63.3
Q ss_pred cccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032848 59 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 59 ipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 130 (132)
||++|..|++|+.+ ++.|+|.+|-++|++++|.|+..+-.+|+.+|.|+||+||+++||..+..-+|-
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~ 72 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 72 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 79999999998874 569999999999999999999999999999999999999999999999977653
No 23
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.04 E-value=6.8e-10 Score=72.64 Aligned_cols=63 Identities=22% Similarity=0.376 Sum_probs=55.0
Q ss_pred HHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032848 66 RLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129 (132)
Q Consensus 66 rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~ 129 (132)
++|..|+.+. +..++++++...|-|.+|.|..+++++|..+|.||+|.||..+||+||...+-
T Consensus 5 ~~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 5 QVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 4455555543 55799999999999999999999999999999999999999999999988753
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.8e-09 Score=74.15 Aligned_cols=66 Identities=26% Similarity=0.192 Sum_probs=55.7
Q ss_pred cchhHHHHHHHHHhcc--cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 61 KLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 61 k~pF~rlvreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
|+.+.--|-+|+++.. .+..++++++.+|-|.++.|+..+.+|+...|.||||.||+.+||.|+.|
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3445555566665552 24789999999999999999999999999999999999999999999965
No 25
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.94 E-value=2.4e-09 Score=82.15 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=57.6
Q ss_pred ccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcCccccChhhHHHHHHHh
Q 032848 60 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFED----TNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 60 pk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~----a~~~a~HakRvTi~~~Diqla~ri~ 128 (132)
++..|..||++|+.+++++.+|+.+|+..| ++|+.++||. |..++.|.+|.||+++|||.|+++.
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m----~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSIL----NSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 367899999999999999999999999999 5665555555 8899999999999999999999874
No 26
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.92 E-value=2.5e-09 Score=76.15 Aligned_cols=62 Identities=29% Similarity=0.411 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 63 PFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 63 pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
...|++++...+ .+..++++++.+|-|.++.|+.++..|+...|.||||.||+.+||.|+.|
T Consensus 32 ~V~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 32 TVGCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 345555555432 25679999999999999999999999999999999999999999999975
No 27
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.90 E-value=5.5e-09 Score=75.66 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=62.1
Q ss_pred hhhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032848 55 TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129 (132)
Q Consensus 55 t~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~ 129 (132)
.++.+|.++..|++++.+. ...+++.+|..+|++++|.|+..|-..|+..|.|.+|.||+.+||..|+.-.|
T Consensus 6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 3678999999999998843 46899999999999999999999999999999999999999999999987655
No 28
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.90 E-value=3.4e-09 Score=80.85 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=66.0
Q ss_pred hhhhhhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032848 52 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 129 (132)
Q Consensus 52 q~st~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~ 129 (132)
....++.+|+++..|++++++- +.+|+.+|.++|+++++.|+..|--.|+..|.|.+|.||+.+||..|..-.|
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred CchhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 3445788999999999999942 6899999999999999999999999999999999999999999999987554
No 29
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.87 E-value=3.1e-09 Score=75.05 Aligned_cols=66 Identities=26% Similarity=0.291 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHhcc--cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 62 LPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 62 ~pF~rlvreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
..+.--|-.|+.+.. .+.+++++++.+|-|.++.|+.++..|+...|.||||.||+.+||.|+.|-
T Consensus 19 aal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 19 AAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 333334444444432 357999999999999999999999999999999999999999999999763
No 30
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.80 E-value=7.8e-09 Score=76.00 Aligned_cols=66 Identities=27% Similarity=0.318 Sum_probs=55.6
Q ss_pred chhHHHHHHHHHhcc--cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 62 LPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 62 ~pF~rlvreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
+...--|-.|+++.. .+..++++++.+|-|.++.|+.++..|+...|.||||.||..+||.|+.|-
T Consensus 19 aAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 19 AAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 344444555555542 468899999999999999999999999999999999999999999999763
No 31
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.67 E-value=2e-08 Score=69.31 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=54.1
Q ss_pred hhHHHHhh--hhhhhhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhH
Q 032848 44 ALREIRKY--QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 121 (132)
Q Consensus 44 ~l~eIr~~--q~st~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Di 121 (132)
.+.||+.. ....++.+|.+.. +.|++.-...-+++.+|..+|..++|.|+..|.+.|+.+|.+.+|.||+.+||
T Consensus 3 ~~~~~~~~~~~~~~~~~lP~arI----krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di 78 (97)
T 1n1j_B 3 HMEEIRNLTVKDFRVQELPLARI----KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78 (97)
T ss_dssp -----------------CCHHHH----HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHhcccCCcCCCcCCHHHH----HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH
Confidence 34566654 2222334444444 44545443346899999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 032848 122 QLARRI 127 (132)
Q Consensus 122 qla~ri 127 (132)
++|++-
T Consensus 79 ~~Av~~ 84 (97)
T 1n1j_B 79 AMAITK 84 (97)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 999753
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.59 E-value=1.1e-07 Score=67.82 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=62.4
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
++-.+.+|.+| |+.|++.-....+++.+|..+|..++|.|+..|.+.|+.+|...+|.||+++||..|+.
T Consensus 36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 34456789988 68888866666799999999999999999999999999999999999999999999975
No 33
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.41 E-value=5.5e-07 Score=64.54 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=61.6
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 20 gLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 5779999999999886 225699999999999999999999999999999999999999999999986
No 34
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=7e-07 Score=70.50 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=51.8
Q ss_pred cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032848 77 TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 130 (132)
Q Consensus 77 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 130 (132)
+.-|+|.++.+.+.++.|.|+..+..||+.+|.||+|+||++.||.+|.+..|.
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 778999999999999999999999999999999999999999999999998764
No 35
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.39 E-value=5.4e-07 Score=64.82 Aligned_cols=67 Identities=25% Similarity=0.251 Sum_probs=61.1
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.|.+|-.+|.|++++- ....|++.+|...|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 5778999999998764 245699999999999999999999999999999999999999999999986
No 36
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.36 E-value=6.8e-07 Score=64.79 Aligned_cols=67 Identities=25% Similarity=0.248 Sum_probs=61.2
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 5779999999998764 245699999999999999999999999999999999999999999999986
No 37
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.35 E-value=1.9e-06 Score=57.35 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=59.7
Q ss_pred hhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 57 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 57 llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
-+++|.-.+.||++| .+...+.+++-+.|.+.+++|+.+..+.|..+|.|.+--||.++|+||...
T Consensus 4 ~vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 4 MVLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp CSSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 356777778888777 578999999999999999999999999999999999999999999999864
No 38
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.30 E-value=8.4e-07 Score=65.81 Aligned_cols=67 Identities=25% Similarity=0.252 Sum_probs=61.1
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 42 gLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 6788999999998764 345699999999999999999999999999999999999999999999986
No 39
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.28 E-value=1e-06 Score=63.76 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=60.9
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.|.+|-.+|.|++++-. ....|++.+|-..|-.+.|.+..+++|.|...|.|.++.+|+++||+||.+
T Consensus 25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 57799999999987761 113599999999999999999999999999999999999999999999986
No 40
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.27 E-value=9.7e-07 Score=60.93 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 62 LPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 62 ~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.|.+|+ +.|++.-....+++.+|...|-.++|.|+..|.+.|+.+|.+.+|.||+++||++|++
T Consensus 12 fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 12 FPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred CChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 444443 4555543344699999999999999999999999999999999999999999998864
No 41
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.26 E-value=8.2e-07 Score=64.51 Aligned_cols=67 Identities=27% Similarity=0.263 Sum_probs=60.5
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.|.+|-.+|.|++++- ....|++.+|...|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 5778999998887653 345699999999999999999999999999999999999999999999986
No 42
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.14 E-value=2.8e-07 Score=76.23 Aligned_cols=46 Identities=43% Similarity=0.554 Sum_probs=12.4
Q ss_pred CccccccccCCCCCCCccccc----CCCCCCCCCCCCcccCCCchhhHHH
Q 032848 3 RTKQTARKSTGGKAPRKQLAT----KSAPTTGGVKKPHRYRPGTVALREI 48 (132)
Q Consensus 3 Rtk~~a~ks~g~kaprk~~~~----k~~~~~~~~k~~~r~~~g~~~l~eI 48 (132)
||||+|++++||++|++++++ ++.|..++++++||++||++++.|.
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 899999999999999999877 3445567778999999999997664
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.10 E-value=5.2e-06 Score=63.46 Aligned_cols=68 Identities=24% Similarity=0.201 Sum_probs=60.8
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
+|.+|-.++.|++++- .....|++.+|...|-...|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 103 gl~fPv~ri~R~lk~~---~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRH---ATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHT---TCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhc---CccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 6889999999998774 1123699999999999999999999999999999999999999999999986
No 44
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.91 E-value=1.7e-05 Score=58.14 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=50.1
Q ss_pred cchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCccccChhhHHHHHH
Q 032848 61 KLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 61 k~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a-~HakRvTi~~~Diqla~r 126 (132)
.+|..|+ +.|++.-...-.++.+|..+++.|+|-|+..|.+.|+.+| ...+|.||+.+||..|+.
T Consensus 19 ~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 19 FLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp -----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 4455553 6666654445689999999999999999999999999999 999999999999999986
No 45
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=96.01 E-value=0.0026 Score=33.07 Aligned_cols=21 Identities=67% Similarity=1.026 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCcccCCCchh
Q 032848 24 KSAPTTGGVKKPHRYRPGTVA 44 (132)
Q Consensus 24 k~~~~~~~~k~~~r~~~g~~~ 44 (132)
++.|..+++++++||+||++|
T Consensus 6 k~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 6 KSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred cCCCCCCccccccccccccCC
Confidence 344556677889999999975
No 46
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=92.82 E-value=0.016 Score=43.15 Aligned_cols=20 Identities=100% Similarity=1.232 Sum_probs=12.0
Q ss_pred CCccccccccCCCCCCCccc
Q 032848 2 ARTKQTARKSTGGKAPRKQL 21 (132)
Q Consensus 2 ARtk~~a~ks~g~kaprk~~ 21 (132)
|||||+|+|++|||++.+++
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~ 20 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQL 20 (159)
T ss_dssp CEEEECCCC-------CHHH
T ss_pred CccccccccccCCCcchHHH
Confidence 79999999999999999886
No 47
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=92.62 E-value=0.65 Score=30.95 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=49.4
Q ss_pred hhhcccchhHHHHHHHHHh-cc-cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQD-FK-TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~-~~-~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla 124 (132)
+..||+.-..||+ +. |. ..++++.+|+.++.+..+-|+..-...|+.-|.--+-.+|.++|++=+
T Consensus 10 ~~~i~~~li~ril----~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 10 GSGFRKELVSRLL----HLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp -CCCCHHHHHHHH----HTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCHHHHHHHH----HHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 3456654444444 43 33 679999999999999999999999999888777667778999998743
No 48
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=91.46 E-value=0.88 Score=30.03 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=48.5
Q ss_pred hcccchhHHHHHHHHHhc-ccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHH
Q 032848 58 LIRKLPFQRLVREIAQDF-KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124 (132)
Q Consensus 58 lipk~pF~rlvreI~~~~-~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla 124 (132)
.||..-..+|.++. + ....||+++|+.++.+..+-|++.-+..|..-|.--+-..|..+|++-+
T Consensus 8 ~~~~~lI~ril~~~---f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 8 GFRKETVERLLRLH---FRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp CCCHHHHHHHHHHH---CCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCHHHHHHHHHHH---hccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 35554445555442 3 2578999999999999999999999999888876666678888888743
No 49
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=86.52 E-value=1.1 Score=33.64 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=59.3
Q ss_pred hhhhhhh--hcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 51 YQKSTEL--LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 51 ~q~st~l--lipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
|.+-.+. +|+-.-|.++.|+. .++-+..+-+.-+-+..|.-+-+||+-|..-|...+|-.|.+.|+-+...+
T Consensus 17 ~~~~~~Mm~vmg~~kferlFR~a-----agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKGl 90 (171)
T 1r4v_A 17 YSKIETMLRPKGFDKLDHYFRTE-----LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKAL 90 (171)
T ss_dssp ----CCTTSCTTHHHHHHHHHHH-----HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHH
Confidence 4444445 78888999999998 567888999999999999999999999999999999999999997554433
No 50
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=84.48 E-value=1.4 Score=32.24 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=53.9
Q ss_pred hcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 58 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 58 lipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
+|+-.-|.++.|+. .++-+..+-+.-+-+..|.-+-+||+-|..-|...+|-.|.+.|+-+...
T Consensus 2 vm~~~~~e~lFR~a-----a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkG 65 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-----AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKG 65 (148)
T ss_dssp CSCHHHHHHHHHHH-----HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHH
T ss_pred cCCHHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 45566788999888 45677777888888999999999999999999999999999999755443
No 51
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=83.85 E-value=2.7 Score=38.78 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=54.4
Q ss_pred hhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 56 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 56 ~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.|.+|-.-..|+++.. ...|++..|-.-|--+.|....+++|-|...|...++..|+++|+++|.+
T Consensus 102 ~l~~pv~~~~~~l~~~-----~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEV-----LGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCSSCHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CccccHHHHHHHhhcc-----cccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 4556655566665333 34699999998888888999999999999999999999999999999974
No 52
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=78.33 E-value=1.9 Score=30.47 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=27.5
Q ss_pred cCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 032848 77 TDLRFQSHAVLALQEAAEAYLVGLFEDTNL 106 (132)
Q Consensus 77 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~ 106 (132)
+..|+|.++.+.+.++.|.|+.++..||+.
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav~ 90 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVT 90 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999753
No 53
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=77.07 E-value=2.1 Score=28.81 Aligned_cols=66 Identities=9% Similarity=0.160 Sum_probs=39.3
Q ss_pred cccchhHHHHHHHHHhc-ccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCccccChhhHHHHHHH
Q 032848 59 IRKLPFQRLVREIAQDF-KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH-------AKRVTIMPKDIQLARRI 127 (132)
Q Consensus 59 ipk~pF~rlvreI~~~~-~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~H-------akRvTi~~~Diqla~ri 127 (132)
||+.-..||+. ..| +.++||+.+|+.++++..+-|+..-.-.|+.-.-- .+-..|..+|+.=...+
T Consensus 2 ip~~llaRIL~---~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaGl 75 (88)
T 3v9r_B 2 LSKEALIKILS---QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGL 75 (88)
T ss_dssp CCSHHHHHHHT---TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHH
T ss_pred CCHHHHHHHHH---HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHHH
Confidence 56665666655 223 47899999999999777666665554444322111 11247888888765554
No 54
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.78 E-value=12 Score=28.82 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=44.6
Q ss_pred cCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 77 TDLRFQSHAVLALQEAAE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 77 ~~~r~~~~Al~aLqea~E----~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
....++.++++.|.+.++ .++.++++.|...|.-.++.+|+.+|++-+...
T Consensus 275 ~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 275 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 456799999999998887 478889999999998899999999999988765
No 55
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=71.96 E-value=18 Score=30.76 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=47.2
Q ss_pred HHHHHHHHhcc---cCcccCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 66 RLVREIAQDFK---TDLRFQSHAVLALQEAA-------------EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 66 rlvreI~~~~~---~~~r~~~~Al~aLqea~-------------E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
.+++.+..++. ....|+.+|+..|.+.+ ...|.++.+.|..+|...++..|+.+|++-|...
T Consensus 297 ~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 297 KLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 34444444333 34689999999987754 4567889999999999899999999999998754
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=69.23 E-value=17 Score=27.63 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=42.7
Q ss_pred cCcccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 77 TDLRFQSHAVLALQEAAEA-------YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 77 ~~~r~~~~Al~aLqea~E~-------~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
..+.|+.++++.|.+.+.. .+..+++.|..+|.-.++.+|+.+|+.-|..+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4568999999999887764 56788888888888889999999999987765
No 57
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=67.00 E-value=6.3 Score=25.60 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=39.3
Q ss_pred hcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032848 58 LIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA 111 (132)
Q Consensus 58 lipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~Ha 111 (132)
++...|.++=+.+|...+ +=.-+++++...+.-|+|..|-+|+|.-...|.|.
T Consensus 2 fL~~~~Lqkri~~I~~k~-gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 2 FLLQAPLQRRILEIGKKH-GITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp CSCHHHHHHHHHHHHHTT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccccHHHHHHHHHHHHhc-CCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 355678888888887753 34468899999999999999999999977777763
No 58
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=59.99 E-value=34 Score=22.52 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=53.3
Q ss_pred cccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccccChhhHHHHHHHh
Q 032848 59 IRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAK-RVTIMPKDIQLARRIR 128 (132)
Q Consensus 59 ipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~Hak-RvTi~~~Diqla~ri~ 128 (132)
++|....+|+..+ .+..++.+.+.+|.-.+-.|+.+|-|.|..+.-.-+ .--|.|..|.-|.+-.
T Consensus 17 f~k~~vKrl~~~~-----~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 17 FPKAAIKRLIQSI-----TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp CCHHHHHHHHHHH-----HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 6777777777666 356888999999999999999999999998887664 4489999999986643
No 59
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=56.71 E-value=6.7 Score=19.67 Aligned_cols=13 Identities=77% Similarity=1.147 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCcc
Q 032848 25 SAPTTGGVKKPHR 37 (132)
Q Consensus 25 ~~~~~~~~k~~~r 37 (132)
++|..++++++||
T Consensus 12 s~p~~~g~kk~hR 24 (26)
T 3avr_B 12 SAPATGGVKKPXX 24 (26)
T ss_pred CCCCCccccccCC
Confidence 3355566666665
No 60
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=52.08 E-value=50 Score=25.00 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=40.2
Q ss_pred cCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 77 TDLRFQSHAVLALQEAAE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 77 ~~~r~~~~Al~aLqea~E------~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
.+..|+.++++.+.+.+. -++.++++.|...+...++.+|+.+|+.-+..
T Consensus 219 ~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 219 NPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 356788999999988887 56778888888888777888899999887654
No 61
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=49.33 E-value=19 Score=22.11 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 97 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 97 lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
|..+..+|.+.|+..++..|+.+|+.-|..
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 555677788888888999999999998764
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=47.64 E-value=87 Score=23.54 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=37.9
Q ss_pred cCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032848 77 TDLRFQSHAVLALQEAAE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 125 (132)
Q Consensus 77 ~~~r~~~~Al~aLqea~E------~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 125 (132)
....++.+++..+.+.+. .++.++++.+...+...+..+|+.+|++.+.
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~ 269 (386)
T 2qby_A 215 KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAK 269 (386)
T ss_dssp CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 356899999999988877 2456677778777777777889999988654
No 63
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=45.68 E-value=65 Score=26.15 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.7
Q ss_pred CcccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHhhcCccccChhhHHHHHHHh
Q 032848 78 DLRFQSHAVLALQEAA-E---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 78 ~~r~~~~Al~aLqea~-E---~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~ 128 (132)
...++.+++..+-..+ + -....+++.|..+|.-.++-+|+.+|++-+..+-
T Consensus 383 ~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 383 GINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 4678999998887776 4 4678888889999988899999999999988764
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=40.94 E-value=89 Score=21.71 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=34.9
Q ss_pred cCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032848 77 TDLRFQSHAVLALQEAAE---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 125 (132)
Q Consensus 77 ~~~r~~~~Al~aLqea~E---~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 125 (132)
.+..++.++++.|.+.++ ..+..+++.+...+...++ +|+.+|++-+.
T Consensus 190 ~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l 240 (242)
T 3bos_A 190 RGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEML 240 (242)
T ss_dssp TTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHh
Confidence 356799999999988776 4556666666666655554 69999988765
No 65
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=40.86 E-value=78 Score=21.42 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=31.6
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 78 DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 78 ~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
+..++.+++..|.+.+.-.+-.+......++..+ -+|+.+|++-+..
T Consensus 178 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 178 GVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4568899998887776644444444444445555 4888999987764
No 66
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=39.87 E-value=32 Score=21.37 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 100 LFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 100 lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
+..+|.+.|+..++..|+.+|+.-|..
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 355677777888888999999988764
No 67
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=39.78 E-value=45 Score=22.89 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=31.1
Q ss_pred cCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032848 77 TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 125 (132)
Q Consensus 77 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 125 (132)
....++.++++.|.+.++-..-.+...+..++..++. +|+.+|++-+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~~ 248 (250)
T 1njg_A 201 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAML 248 (250)
T ss_dssp TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHHh
Confidence 3567889999888888764444433333344445443 89999987654
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=39.04 E-value=27 Score=25.47 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHH
Q 032848 96 YLVGLFEDTNLCAIHAKRVTIMPKDIQLA 124 (132)
Q Consensus 96 ~lv~lfe~a~~~a~HakRvTi~~~Diqla 124 (132)
-|..+.+.|...|...++.+|+.+|++-+
T Consensus 224 dl~~~~~~a~~~a~~~~~~~I~~~dl~~a 252 (254)
T 1ixz_A 224 DLENLLNEAALLAAREGRRKITMKDLEEA 252 (254)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 46677778888888888889999998765
No 69
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=38.05 E-value=34 Score=21.67 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 97 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 97 lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
|..|..+|.+.|++..+..|+.+|+.-|..
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 455566777888888899999999998875
No 70
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=34.67 E-value=39 Score=20.76 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 97 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 97 lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
|..+..+|.+.|+...+..|+.+|+.-|..
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 334466777888888889999999988764
No 71
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=33.19 E-value=36 Score=24.86 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032848 96 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 127 (132)
Q Consensus 96 ~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 127 (132)
-|..+.+.|...|...++.+|+.+|+.-|...
T Consensus 220 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 45677788888899888999999999987653
No 72
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=32.33 E-value=48 Score=20.98 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=41.9
Q ss_pred cccCCCchhhHHHHhhhhhhhhhcccchhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 032848 36 HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 115 (132)
Q Consensus 36 ~r~~~g~~~l~eIr~~q~st~llipk~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvT 115 (132)
+...|....-.+|=+..-....+-+-..|..|+. ....||..-|..| ..+|.+.|+...+..
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~-------~T~G~SGADL~~l-----------~~eAa~~alr~~~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAE-------LMPGASGAEVKGV-----------CTEAGMYALRERRVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHH-------TCSSCCHHHHHHH-----------HHHHHHHHHHTTCSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHH-------HcCCCCHHHHHHH-----------HHHHHHHHHHHcCCC
Confidence 3456777777777443222111112333444432 2236666555544 445666777777889
Q ss_pred cChhhHHHHHH
Q 032848 116 IMPKDIQLARR 126 (132)
Q Consensus 116 i~~~Diqla~r 126 (132)
|+.+|+.-|..
T Consensus 69 I~~~df~~Al~ 79 (86)
T 2krk_A 69 VTQEDFEMAVA 79 (86)
T ss_dssp ECHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999988764
No 73
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=32.19 E-value=1.6e+02 Score=22.22 Aligned_cols=47 Identities=11% Similarity=0.004 Sum_probs=34.7
Q ss_pred CcccCHHHHHHHHHHHH---H---HHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 78 DLRFQSHAVLALQEAAE---A---YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 78 ~~r~~~~Al~aLqea~E---~---~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
+..++.++++.+.+.+. - ++.++++.|...|. +..+|+.+|+..+..
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~ 268 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIV 268 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHH
Confidence 46789999998888776 2 45667777777766 566788899887653
No 74
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.96 E-value=47 Score=22.41 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 032848 85 AVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 115 (132)
Q Consensus 85 Al~aLqea~E~~lv~lfe~a~~~a~HakRvT 115 (132)
....+..-.|..-..||+.||.+..-+++.+
T Consensus 48 ~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~ 78 (97)
T 2eqb_B 48 EADKLNKEVEDLTASLFDEANNMVADARKEK 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555777779999999999999998886543
No 75
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=30.89 E-value=89 Score=23.83 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHh
Q 032848 63 PFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 128 (132)
Q Consensus 63 pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~ 128 (132)
-....+++++.+ .+..++.+|+..|-+.++.=+..+...-..++.+++.-+|+.+||+-.....
T Consensus 146 ~l~~~l~~~~~~--~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 146 QLPRWVAARAKQ--LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHHH--TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhh
Confidence 344555555543 4578999999999877775555555444455555444589999987665443
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=28.86 E-value=49 Score=24.57 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032848 96 YLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 125 (132)
Q Consensus 96 ~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 125 (132)
-|..+.+.|...|...++.+|+.+|+.-|.
T Consensus 248 dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 248 DLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 456677778777877788889999987653
No 77
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=28.50 E-value=63 Score=21.80 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=13.7
Q ss_pred ccchhHHHHHHHHHhcc
Q 032848 60 RKLPFQRLVREIAQDFK 76 (132)
Q Consensus 60 pk~pF~rlvreI~~~~~ 76 (132)
||.||..||......+.
T Consensus 7 PkEPFrDyVdRf~kalr 23 (96)
T 1eoq_A 7 PSESFVDFANRLIKAVE 23 (96)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 79999999988766443
No 78
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=27.19 E-value=2e+02 Score=21.64 Aligned_cols=49 Identities=10% Similarity=0.267 Sum_probs=38.2
Q ss_pred CcccCHHHHHHHHHHH---------H---HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 78 DLRFQSHAVLALQEAA---------E---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 78 ~~r~~~~Al~aLqea~---------E---~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
+..|+.++++.+.+.+ + .++.++++.|...+...+.-+|+.+|+.-+..
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 212 EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 4478999999998888 3 34677778888888777888899999887654
No 79
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.97 E-value=62 Score=27.17 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 95 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 95 ~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
+-|..+..+|.+.|+..++..|+.+|+.-|..
T Consensus 390 ADI~~l~~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 390 ADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 34566677888889999999999999998764
No 80
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=24.58 E-value=1.2e+02 Score=21.69 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=13.8
Q ss_pred ccchhHHHHHHHHHhcc
Q 032848 60 RKLPFQRLVREIAQDFK 76 (132)
Q Consensus 60 pk~pF~rlvreI~~~~~ 76 (132)
+.-||...+.+|+.+++
T Consensus 6 ~~DPF~d~l~~iM~~Ie 22 (138)
T 3ts9_A 6 RENPFKEKLLEIMASIQ 22 (138)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 45699999999998874
No 81
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=22.24 E-value=1.8e+02 Score=21.14 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 96 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 96 ~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
-+..+...|...|...++.+|+.+|++-|..
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 5667888889999999999999999998764
No 82
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.15 E-value=79 Score=26.13 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 95 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 95 ~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
+-|..+..+|.+.|+..++..|+.+|+..|..
T Consensus 356 ADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~ 387 (405)
T 4b4t_J 356 ADVKGVCTEAGMYALRERRIHVTQEDFELAVG 387 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 44666677788889999999999999998864
No 83
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=22.11 E-value=83 Score=28.90 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032848 62 LPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCA 108 (132)
Q Consensus 62 ~pF~rlvreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a 108 (132)
.-|..-+|+|++++++++.+..+|++-+ |..+..|+- -+|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~ 61 (1049)
T 3ksy_A 21 GLLVPALKKVQGQVHPTLESNDDALQYV----EELILQLLN--MLCQ 61 (1049)
T ss_dssp SSSHHHHHHHHHHHCTTSBCCHHHHHHH----HHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccHhHHHHH----HHHHHHHHH--HHhc
Confidence 4577889999999999999999999998 888888875 3444
No 84
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.85 E-value=76 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032848 95 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 126 (132)
Q Consensus 95 ~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 126 (132)
+-|..+..+|.+.|+..++..|+.+|+.-|..
T Consensus 381 adi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 381 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 34677778888899999999999999998864
No 85
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.55 E-value=83 Score=22.40 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 032848 86 VLALQEAAEAYLVGLFEDTNLCAIHAKRVT 115 (132)
Q Consensus 86 l~aLqea~E~~lv~lfe~a~~~a~HakRvT 115 (132)
...+..-.|+.-..||+.||.+..-+++.+
T Consensus 69 ~~~ie~ElE~LTasLFeEAN~MVa~ar~~~ 98 (135)
T 2e7s_A 69 ADKLNKEVEDLTASLFDEANNLVADARMEK 98 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666779999999999999999987764
No 86
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=21.44 E-value=87 Score=19.93 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032848 83 SHAVLALQEAAEAYLVGLFED 103 (132)
Q Consensus 83 ~~Al~aLqea~E~~lv~lfe~ 103 (132)
.+|+..+++|.+.+|..+.++
T Consensus 47 eEA~~~a~eAl~~~le~~~e~ 67 (87)
T 2dsy_A 47 KECEANLQAALEDWLLFLLSR 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 688999999999999988876
Done!