BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032850
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9RYR5|HMP_DEIRA Flavohemoprotein OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=hmp PE=3 SV=1
Length = 403
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 78 VGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYD 123
VG ++LG I G LG P+I A A A + DLM + K +YD
Sbjct: 98 VGQYLLGAI-AGVLGDAAKPEILDAWAAAYGELADLMIGIEKGMYD 142
>sp|Q60750|EPHA1_MOUSE Ephrin type-A receptor 1 OS=Mus musculus GN=Epha1 PE=1 SV=2
Length = 977
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 20 SGSFLKPLDLCLGSNTPANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGGRANSAGFFVG 79
+G+ L + LGS+ + SP+ +W V + + P +S + G A GF+
Sbjct: 229 AGTCLSHAQISLGSSGTPRMHCSPDGEWLVPVGQCQCEPGYEESSGNVGCTACPTGFY-- 286
Query: 80 GFVLGGIIVGTLGCVYAPQISKA 102
+ + TL C+ PQ S A
Sbjct: 287 -----RVDMNTLRCLKCPQHSIA 304
>sp|Q87H06|GUAC_VIBPA GMP reductase OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=guaC PE=3 SV=1
Length = 348
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 83 LGGIIVGTLGCVYAPQISKALAGAA 107
LGG+I+G GC A +SKA G A
Sbjct: 212 LGGMIIGDGGCSCAGDVSKAFGGGA 236
>sp|Q6NGC8|MURG_CORDI UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=murG PE=3 SV=1
Length = 359
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 55 RRRPFKVHASNSEGGRANSAGFFVGGFVLGGII-VGTLGCVYAPQISKALAGAAADRKDL 113
++ PF VH +N+ G AN G +GG L + G G V I +L+G D L
Sbjct: 115 QKIPFIVHEANARSGMANKLGVRLGGMGLNAVANSGMPGTVVGIPIRSSLSG---DNTAL 171
Query: 114 MRKLPKFIYDEEK 126
R + D EK
Sbjct: 172 DRAQQLWGLDPEK 184
>sp|A4QFM3|MURG_CORGB UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Corynebacterium glutamicum (strain R)
GN=murG PE=3 SV=2
Length = 356
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 58 PFKVHASNSEGGRANSAGFFVGGFVLGGII-VGTLGCVYAPQISKALAGA----AADR 110
PF VH +N+ G AN G +GG L + G G V I L+GA AADR
Sbjct: 116 PFFVHEANARAGMANKLGVKLGGVGLNAVAGSGMEGDVVGIPIRAVLSGARDESAADR 173
>sp|B7VS90|GUAC_VIBSL GMP reductase OS=Vibrio splendidus (strain LGP32) GN=guaC PE=3 SV=1
Length = 347
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 83 LGGIIVGTLGCVYAPQISKALAGAA 107
LGG+I+G GC A +SKA G A
Sbjct: 212 LGGMIIGDGGCSCAGDVSKAFGGGA 236
>sp|Q8NNN5|MURG_CORGL UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=murG PE=3 SV=2
Length = 356
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 58 PFKVHASNSEGGRANSAGFFVGGFVLGGII-VGTLGCVYAPQISKALAGA----AADR 110
PF VH +N+ G AN G +GG L + G G V I L+GA AADR
Sbjct: 116 PFFVHEANARAGMANKLGVKLGGVGLNAVAGSGMDGDVVGIPIRAVLSGARDESAADR 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,679,659
Number of Sequences: 539616
Number of extensions: 1773729
Number of successful extensions: 5036
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5028
Number of HSP's gapped (non-prelim): 16
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)