Query 032850
Match_columns 132
No_of_seqs 47 out of 49
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12732 YtxH: YtxH-like prote 97.4 6.1E-05 1.3E-09 50.7 1.6 27 77-103 1-27 (74)
2 COG4980 GvpP Gas vesicle prote 96.6 0.0015 3.2E-08 49.4 2.2 32 73-104 3-34 (115)
3 PRK09430 djlA Dna-J like membr 84.5 0.62 1.4E-05 38.5 1.9 28 76-103 9-36 (267)
4 PRK10983 putative inner membra 79.2 3.3 7.2E-05 35.4 4.4 31 75-105 309-339 (368)
5 TIGR03789 pdsO proteobacterial 79.1 1 2.3E-05 37.2 1.3 15 76-90 50-64 (239)
6 TIGR03789 pdsO proteobacterial 76.7 1 2.2E-05 37.3 0.6 19 76-94 46-64 (239)
7 PF06295 DUF1043: Protein of u 72.8 2.5 5.4E-05 31.5 1.8 24 78-101 3-26 (128)
8 PF07882 Fucose_iso_N2: L-fuco 68.4 1.4 3.1E-05 35.9 -0.3 48 83-131 6-56 (181)
9 COG4980 GvpP Gas vesicle prote 67.0 3.4 7.4E-05 31.4 1.5 22 80-101 6-27 (115)
10 PF10247 Romo1: Reactive mitoc 66.4 3.4 7.3E-05 28.8 1.2 19 78-96 8-26 (67)
11 PF01594 UPF0118: Domain of un 65.9 4 8.6E-05 32.5 1.7 29 76-104 292-320 (327)
12 PF10779 XhlA: Haemolysin XhlA 65.6 4.4 9.4E-05 27.3 1.6 19 77-95 52-70 (71)
13 PRK11677 hypothetical protein; 63.4 5.1 0.00011 30.9 1.8 24 77-100 6-29 (134)
14 KOG4096 Uncharacterized conser 62.0 4.2 9.1E-05 29.3 1.1 21 76-96 10-30 (75)
15 PF13488 Gly-zipper_Omp: Glyci 57.3 8.5 0.00018 24.6 1.8 23 78-100 21-43 (46)
16 PF09813 Coiled-coil_56: Coile 54.4 7.7 0.00017 29.1 1.4 20 77-96 52-71 (100)
17 PF08566 Pam17: Mitochondrial 53.5 9.8 0.00021 30.8 2.0 42 83-124 82-132 (173)
18 PF05433 Rick_17kDa_Anti: Glyc 51.7 9.3 0.0002 24.1 1.3 17 80-96 2-18 (42)
19 PF04971 Lysis_S: Lysis protei 49.6 9.6 0.00021 26.9 1.2 14 82-95 38-51 (68)
20 PHA00327 minor capsid protein 49.1 13 0.00029 30.6 2.1 50 82-131 23-73 (187)
21 TIGR02872 spore_ytvI sporulati 44.7 15 0.00032 29.3 1.8 29 76-104 305-333 (341)
22 PF04930 FUN14: FUN14 family; 43.0 8.3 0.00018 27.3 0.1 14 71-84 85-98 (100)
23 PF04286 DUF445: Protein of un 41.8 15 0.00032 29.4 1.4 14 80-93 349-362 (367)
24 PF06682 DUF1183: Protein of u 38.8 22 0.00048 30.9 2.0 27 70-100 247-273 (318)
25 PRK10478 putative PTS system f 38.1 19 0.00042 31.7 1.6 37 65-101 78-122 (359)
26 PRK10381 LPS O-antigen length 36.6 19 0.00041 31.3 1.3 25 70-96 333-357 (377)
27 PF04286 DUF445: Protein of un 36.4 19 0.00041 28.8 1.1 14 82-95 347-360 (367)
28 PF14242 DUF4342: Domain of un 36.0 22 0.00047 25.3 1.3 18 84-101 50-67 (84)
29 PTZ00234 variable surface prot 35.9 22 0.00047 32.1 1.6 29 75-103 361-389 (433)
30 PF11368 DUF3169: Protein of u 35.4 24 0.00052 28.3 1.6 19 77-95 11-29 (248)
31 PF02466 Tim17: Tim17/Tim22/Ti 34.7 18 0.00039 25.5 0.8 19 67-85 82-100 (128)
32 PF12297 EVC2_like: Ellis van 34.5 24 0.00052 32.2 1.7 64 36-100 26-92 (429)
33 PF06072 Herpes_US9: Alphaherp 34.4 25 0.00054 24.4 1.3 23 76-98 37-59 (60)
34 PRK11638 lipopolysaccharide bi 32.8 20 0.00044 30.9 0.8 24 71-96 312-335 (342)
35 PF08802 CytB6-F_Fe-S: Cytochr 32.8 41 0.0009 21.3 2.1 23 78-100 11-33 (39)
36 PRK11280 hypothetical protein; 32.2 19 0.00042 29.0 0.6 25 85-111 92-116 (170)
37 CHL00114 psbX photosystem II p 31.4 18 0.00039 23.2 0.3 26 75-100 6-34 (39)
38 PF05283 MGC-24: Multi-glycosy 30.7 26 0.00057 28.4 1.1 22 71-95 156-178 (186)
39 PF06305 DUF1049: Protein of u 30.5 76 0.0016 20.1 3.1 7 125-131 61-67 (68)
40 COG4371 Predicted membrane pro 29.9 35 0.00075 30.2 1.8 24 82-105 106-129 (334)
41 PF11981 DUF3482: Domain of un 29.7 29 0.00062 29.5 1.2 18 76-93 170-187 (292)
42 PF14034 Spore_YtrH: Sporulati 29.6 33 0.00071 25.8 1.4 18 80-97 12-29 (102)
43 TIGR01427 PTS_IIC_fructo PTS s 29.6 39 0.00084 29.3 2.0 40 64-103 83-130 (346)
44 KOG2408 Peroxidase/oxygenase [ 27.9 26 0.00056 33.4 0.7 24 82-105 623-646 (719)
45 PF01102 Glycophorin_A: Glycop 27.7 35 0.00075 26.0 1.3 23 72-95 60-82 (122)
46 COG3133 SlyB Outer membrane li 27.7 23 0.00049 28.5 0.3 32 56-89 49-80 (154)
47 PRK12509 putative monovalent c 27.2 43 0.00093 25.7 1.7 17 71-87 30-46 (137)
48 PRK08387 putative monovalent c 27.2 42 0.0009 25.5 1.6 17 71-87 29-45 (131)
49 KOG4782 Predicted membrane pro 27.1 48 0.001 25.2 1.9 27 77-103 60-86 (108)
50 PF13664 DUF4149: Domain of un 27.0 35 0.00075 23.2 1.1 36 78-117 2-37 (101)
51 COG4177 LivM ABC-type branched 26.8 39 0.00085 28.9 1.6 23 78-100 208-230 (314)
52 PF10873 DUF2668: Protein of u 26.7 16 0.00035 29.3 -0.7 16 75-90 55-70 (155)
53 cd03154 TM4SF3_like_LEL Tetras 25.8 41 0.00089 22.4 1.3 17 89-105 1-17 (100)
54 PRK10510 putative outer membra 25.6 64 0.0014 26.0 2.5 24 75-98 61-84 (219)
55 PRK12508 putative monovalent c 25.5 46 0.001 25.4 1.6 16 71-86 31-46 (139)
56 PRK08386 putative monovalent c 24.9 48 0.001 25.6 1.6 17 71-87 31-47 (151)
57 COG0628 yhhT Predicted permeas 24.8 46 0.001 27.6 1.6 28 78-105 308-335 (355)
58 PRK12505 putative monovalent c 24.2 49 0.0011 26.2 1.6 16 71-86 43-58 (159)
59 PF04039 MnhB: Domain related 24.1 53 0.0011 23.7 1.6 17 71-87 28-44 (124)
60 PRK12573 putative monovalent c 24.0 53 0.0012 25.2 1.7 17 71-87 32-48 (140)
61 COG4395 Uncharacterized protei 23.6 48 0.001 28.7 1.5 10 70-79 25-34 (281)
62 PRK13731 conjugal transfer sur 23.1 55 0.0012 27.9 1.8 9 18-26 39-47 (243)
63 PF14241 DUF4341: Domain of un 23.0 44 0.00096 22.2 1.0 13 76-88 49-61 (62)
64 PF13436 Gly-zipper_OmpA: Glyc 22.7 1.2E+02 0.0025 22.4 3.3 20 77-96 52-71 (118)
65 PRK12574 putative monovalent c 22.7 58 0.0013 25.0 1.7 17 71-87 32-48 (141)
66 TIGR02161 napC_nirT periplasmi 22.6 62 0.0013 25.8 1.9 21 79-99 18-38 (185)
67 PF09880 DUF2107: Predicted me 22.5 44 0.00095 24.1 0.9 18 86-103 8-25 (76)
68 PF06697 DUF1191: Protein of u 22.5 54 0.0012 28.3 1.6 19 78-96 216-234 (278)
69 PRK09430 djlA Dna-J like membr 22.3 54 0.0012 27.1 1.6 22 75-96 12-33 (267)
70 PF12072 DUF3552: Domain of un 22.1 76 0.0017 25.0 2.3 24 80-103 5-28 (201)
71 PF11240 DUF3042: Protein of u 21.7 64 0.0014 21.8 1.5 8 77-84 4-11 (54)
72 TIGR00943 2a6301s02 monovalent 21.5 64 0.0014 23.7 1.6 17 71-87 7-23 (107)
73 PRK10540 lipoprotein; Provisio 21.2 41 0.00089 23.5 0.6 12 87-98 58-69 (72)
74 TIGR01089 fucI L-fucose isomer 20.9 37 0.0008 32.2 0.4 48 82-130 176-226 (587)
75 PF03035 RNA_capsid: Calicivir 20.9 66 0.0014 27.3 1.8 44 79-125 2-51 (226)
76 COG3134 Predicted outer membra 20.8 43 0.00093 27.4 0.7 18 78-95 71-88 (179)
No 1
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=97.45 E-value=6.1e-05 Score=50.75 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=24.3
Q ss_pred chhhhhhhhhhhhhhhhhhhhhhHHHh
Q 032850 77 FVGGFVLGGIIVGTLGCVYAPQISKAL 103 (132)
Q Consensus 77 FlaGfllGG~V~G~LG~vfAPQIskaL 103 (132)
|+.||++|++++.++|++|||+--+-+
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~ 27 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKSGKET 27 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 899999999999999999999865544
No 2
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=96.56 E-value=0.0015 Score=49.45 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=29.3
Q ss_pred CcccchhhhhhhhhhhhhhhhhhhhhhHHHhh
Q 032850 73 SAGFFVGGFVLGGIIVGTLGCVYAPQISKALA 104 (132)
Q Consensus 73 ~~G~FlaGfllGG~V~G~LG~vfAPQIskaL~ 104 (132)
.+++||.|.++||+|+.+.+-+|||+-.|-+.
T Consensus 3 ~~~~~l~G~liGgiiGa~aaLL~AP~sGkelR 34 (115)
T COG4980 3 KGKDFLFGILIGGIIGAAAALLFAPKSGKELR 34 (115)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 46899999999999999999999999888775
No 3
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=84.47 E-value=0.62 Score=38.45 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=24.2
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhHHHh
Q 032850 76 FFVGGFVLGGIIVGTLGCVYAPQISKAL 103 (132)
Q Consensus 76 ~FlaGfllGG~V~G~LG~vfAPQIskaL 103 (132)
|++.||++||.++.++|+++--.+.+..
T Consensus 9 g~~~G~~~~g~~Ga~~G~~~Gh~~d~~~ 36 (267)
T PRK09430 9 GFAFGFLFGGFFGALLGLLIGHMFDKAR 36 (267)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhHHhhhh
Confidence 6788999999999999999988888754
No 4
>PRK10983 putative inner membrane protein; Provisional
Probab=79.22 E-value=3.3 Score=35.44 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=24.4
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhhhHHHhhh
Q 032850 75 GFFVGGFVLGGIIVGTLGCVYAPQISKALAG 105 (132)
Q Consensus 75 G~FlaGfllGG~V~G~LG~vfAPQIskaL~~ 105 (132)
--.+.|.+.|+.+||.+|.+++|-+=--+..
T Consensus 309 ~~il~~~~~G~~~fG~~G~~lgp~i~a~~~~ 339 (368)
T PRK10983 309 ILILSGVIGGLIAFGMIGLFIGPVVLAVSYR 339 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888999999999987644433
No 5
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=79.10 E-value=1 Score=37.24 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=5.8
Q ss_pred cchhhhhhhhhhhhh
Q 032850 76 FFVGGFVLGGIIVGT 90 (132)
Q Consensus 76 ~FlaGfllGG~V~G~ 90 (132)
|.+.|.++||.|+++
T Consensus 50 ga~~g~~~gg~~G~~ 64 (239)
T TIGR03789 50 GALLGALVGGPVGAI 64 (239)
T ss_pred HHHHhhhhccHHHHH
Confidence 344443333333333
No 6
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=76.66 E-value=1 Score=37.31 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=8.5
Q ss_pred cchhhhhhhhhhhhhhhhh
Q 032850 76 FFVGGFVLGGIIVGTLGCV 94 (132)
Q Consensus 76 ~FlaGfllGG~V~G~LG~v 94 (132)
|+.+|+++||+|+|.+|.+
T Consensus 46 g~~~ga~~g~~~gg~~G~~ 64 (239)
T TIGR03789 46 GLGSGALLGALVGGPVGAI 64 (239)
T ss_pred hHHHHHHHhhhhccHHHHH
Confidence 4444444444444444444
No 7
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=72.82 E-value=2.5 Score=31.49 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=19.1
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHH
Q 032850 78 VGGFVLGGIIVGTLGCVYAPQISK 101 (132)
Q Consensus 78 laGfllGG~V~G~LG~vfAPQIsk 101 (132)
+.|||+|.|||-+++.++.+...+
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQK 26 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhh
Confidence 578899988888888888877643
No 8
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=68.41 E-value=1.4 Score=35.86 Aligned_cols=48 Identities=29% Similarity=0.635 Sum_probs=30.9
Q ss_pred hhhhhhhhhhhhhhhhhHHHhhhhh---hhhHHHHhhCCCcccchhHHhhhc
Q 032850 83 LGGIIVGTLGCVYAPQISKALAGAA---ADRKDLMRKLPKFIYDEEKALENL 131 (132)
Q Consensus 83 lGG~V~G~LG~vfAPQIskaL~~~~---~D~~~l~~~~~k~~yDeE~~lEkT 131 (132)
+||+-.|+.|+++-|+.=..-++.- -|...+.|+...-|||+|| .|++
T Consensus 6 iG~~sMGIagsivd~~f~~~ylGmr~E~VD~~Ei~RR~e~~iyD~~E-~e~A 56 (181)
T PF07882_consen 6 IGGVSMGIAGSIVDPDFFQEYLGMRVEYVDMSEIIRRMEEGIYDEEE-FEKA 56 (181)
T ss_dssp ESS-STT-GGGS--HHHHHHCT--EEEEE-THHHHHHHHCT-S-HHH-HHHH
T ss_pred cCCccccccccccCHHHHHHHhCCCceeecHHHHHHHHHccCCCHHH-HHHH
Confidence 6888899999999998777655532 4889999988888999874 6665
No 9
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=66.97 E-value=3.4 Score=31.38 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhHH
Q 032850 80 GFVLGGIIVGTLGCVYAPQISK 101 (132)
Q Consensus 80 GfllGG~V~G~LG~vfAPQIsk 101 (132)
.||+|.+|+|++|++.|=++.-
T Consensus 6 ~~l~G~liGgiiGa~aaLL~AP 27 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFAP 27 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhCC
Confidence 6999999999999998755443
No 10
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=66.36 E-value=3.4 Score=28.79 Aligned_cols=19 Identities=32% Similarity=0.854 Sum_probs=15.5
Q ss_pred hhhhhhhhhhhhhhhhhhh
Q 032850 78 VGGFVLGGIIVGTLGCVYA 96 (132)
Q Consensus 78 laGfllGG~V~G~LG~vfA 96 (132)
-.||+.|++|+++.|.+|-
T Consensus 8 kmG~~MG~~VG~~~G~l~G 26 (67)
T PF10247_consen 8 KMGFMMGGAVGGAFGALFG 26 (67)
T ss_pred HHHHHHhhHHHhhhhhhhh
Confidence 4688889999999888873
No 11
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=65.86 E-value=4 Score=32.49 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=24.3
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhHHHhh
Q 032850 76 FFVGGFVLGGIIVGTLGCVYAPQISKALA 104 (132)
Q Consensus 76 ~FlaGfllGG~V~G~LG~vfAPQIskaL~ 104 (132)
--+.+.++|+.+||.+|.++||-+--.+.
T Consensus 292 ~~l~~~~~g~~~fG~~G~il~~pi~~~~~ 320 (327)
T PF01594_consen 292 LILLAVIIGGYLFGFIGLILAPPILAVIK 320 (327)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35678999999999999999998765553
No 12
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=65.62 E-value=4.4 Score=27.26 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=15.4
Q ss_pred chhhhhhhhhhhhhhhhhh
Q 032850 77 FVGGFVLGGIIVGTLGCVY 95 (132)
Q Consensus 77 FlaGfllGG~V~G~LG~vf 95 (132)
-+-|+++|++|.|++++++
T Consensus 52 W~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 52 WIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4568899999999888875
No 13
>PRK11677 hypothetical protein; Provisional
Probab=63.39 E-value=5.1 Score=30.86 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=19.3
Q ss_pred chhhhhhhhhhhhhhhhhhhhhhH
Q 032850 77 FVGGFVLGGIIVGTLGCVYAPQIS 100 (132)
Q Consensus 77 FlaGfllGG~V~G~LG~vfAPQIs 100 (132)
.+.|||+|.+||-+++.+..|...
T Consensus 6 a~i~livG~iiG~~~~R~~~~~~~ 29 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRKLR 29 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccchhh
Confidence 468899999888888888887753
No 14
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.04 E-value=4.2 Score=29.26 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=17.8
Q ss_pred cchhhhhhhhhhhhhhhhhhh
Q 032850 76 FFVGGFVLGGIIVGTLGCVYA 96 (132)
Q Consensus 76 ~FlaGfllGG~V~G~LG~vfA 96 (132)
.+=.|+++|++|+++.|.||-
T Consensus 10 KikmG~~mG~avG~a~G~lfG 30 (75)
T KOG4096|consen 10 KIKMGLMMGGAVGGATGALFG 30 (75)
T ss_pred HHHHHHHHHhhhhhhhhhhcc
Confidence 456799999999999999874
No 15
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=57.35 E-value=8.5 Score=24.61 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=15.6
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhH
Q 032850 78 VGGFVLGGIIVGTLGCVYAPQIS 100 (132)
Q Consensus 78 laGfllGG~V~G~LG~vfAPQIs 100 (132)
..|.++|.+|++++|+.+..+..
T Consensus 21 ~~ga~iGa~vGa~~G~~ig~~~d 43 (46)
T PF13488_consen 21 GKGAAIGAAVGAAVGAAIGNYMD 43 (46)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777655443
No 16
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=54.40 E-value=7.7 Score=29.14 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=17.5
Q ss_pred chhhhhhhhhhhhhhhhhhh
Q 032850 77 FVGGFVLGGIIVGTLGCVYA 96 (132)
Q Consensus 77 FlaGfllGG~V~G~LG~vfA 96 (132)
-++|+.||++|+|+-+|-+-
T Consensus 52 ~~Tgl~L~~~v~gIY~YTi~ 71 (100)
T PF09813_consen 52 LLTGLALGAFVVGIYAYTIY 71 (100)
T ss_pred HHHHHHHHHHHHHHHhheee
Confidence 69999999999999988653
No 17
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=53.51 E-value=9.8 Score=30.81 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=28.1
Q ss_pred hhhhhhhhhhhhhhhhhHHHhhhhh---------hhhHHHHhhCCCcccch
Q 032850 83 LGGIIVGTLGCVYAPQISKALAGAA---------ADRKDLMRKLPKFIYDE 124 (132)
Q Consensus 83 lGG~V~G~LG~vfAPQIskaL~~~~---------~D~~~l~~~~~k~~yDe 124 (132)
++.+.+|+||+++-|-|-.+++.+. ..+++|.+.+.+.+.|+
T Consensus 82 ~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDp 132 (173)
T PF08566_consen 82 LATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDP 132 (173)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4567788999999998877776643 34556666555544443
No 18
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=51.70 E-value=9.3 Score=24.10 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=12.2
Q ss_pred hhhhhhhhhhhhhhhhh
Q 032850 80 GFVLGGIIVGTLGCVYA 96 (132)
Q Consensus 80 GfllGG~V~G~LG~vfA 96 (132)
|.++|+++++++|..+.
T Consensus 2 G~~~Ga~~Ga~~G~~ig 18 (42)
T PF05433_consen 2 GALIGAAVGAVAGSQIG 18 (42)
T ss_pred chHHHHHHHHHHHHHhc
Confidence 56777777777777663
No 19
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=49.64 E-value=9.6 Score=26.87 Aligned_cols=14 Identities=43% Similarity=0.764 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhhhh
Q 032850 82 VLGGIIVGTLGCVY 95 (132)
Q Consensus 82 llGG~V~G~LG~vf 95 (132)
|+||++||+|+|+.
T Consensus 38 vi~gi~~~~lt~lt 51 (68)
T PF04971_consen 38 VIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999999975
No 20
>PHA00327 minor capsid protein
Probab=49.10 E-value=13 Score=30.56 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=35.0
Q ss_pred hhhhhhhhhhhhhhhhhhHHHhhhhhhhhHHHHhhCCCcccch-hHHhhhc
Q 032850 82 VLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKLPKFIYDE-EKALENL 131 (132)
Q Consensus 82 llGG~V~G~LG~vfAPQIskaL~~~~~D~~~l~~~~~k~~yDe-E~~lEkT 131 (132)
.|+|+.-|+|||.-|..-.++-..+...+..|++....--|-- -|.|+++
T Consensus 23 ml~g~asg~l~Y~gaqkqNa~~~~ia~rqmafQErMSnTA~qR~~eDmkkA 73 (187)
T PHA00327 23 MLPGIASGVLGYLGAQKQNATAKQIARRQMAFQERMSNTAYQRAMEDMKKA 73 (187)
T ss_pred cccchhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 3678899999999998888777665566777888776544432 2346554
No 21
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=44.69 E-value=15 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=24.0
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhHHHhh
Q 032850 76 FFVGGFVLGGIIVGTLGCVYAPQISKALA 104 (132)
Q Consensus 76 ~FlaGfllGG~V~G~LG~vfAPQIskaL~ 104 (132)
--+-+.++||.++|.+|.++||-+--.+.
T Consensus 305 ~vl~~~l~g~~~~G~~G~~l~~~~~~~~~ 333 (341)
T TIGR02872 305 ATLISMYIGLKLFGFLGLIFGPVIVVLFK 333 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999998765553
No 22
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=43.01 E-value=8.3 Score=27.28 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=11.5
Q ss_pred CCCcccchhhhhhh
Q 032850 71 ANSAGFFVGGFVLG 84 (132)
Q Consensus 71 ~g~~G~FlaGfllG 84 (132)
..+..+|++||++|
T Consensus 85 ~~~~~gF~~Gf~lG 98 (100)
T PF04930_consen 85 LPFSAGFLAGFLLG 98 (100)
T ss_pred ccHhHHHHHHHHHH
Confidence 35678999999987
No 23
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=41.78 E-value=15 Score=29.38 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=7.3
Q ss_pred hhhhhhhhhhhhhh
Q 032850 80 GFVLGGIIVGTLGC 93 (132)
Q Consensus 80 GfllGG~V~G~LG~ 93 (132)
|+||||+||-++..
T Consensus 349 GallG~liG~~~~~ 362 (367)
T PF04286_consen 349 GALLGGLIGLLQYL 362 (367)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555554443
No 24
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=38.82 E-value=22 Score=30.94 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=21.2
Q ss_pred CCCCcccchhhhhhhhhhhhhhhhhhhhhhH
Q 032850 70 RANSAGFFVGGFVLGGIIVGTLGCVYAPQIS 100 (132)
Q Consensus 70 R~g~~G~FlaGfllGG~V~G~LG~vfAPQIs 100 (132)
.++.+.||++|+..|| ++||+|-.+-+
T Consensus 247 ~~~wgPGFWTGla~Gg----~aGYl~G~r~~ 273 (318)
T PF06682_consen 247 QQNWGPGFWTGLAAGG----AAGYLFGRRRN 273 (318)
T ss_pred CCCCCCCchHHHHHHH----HHHhhhccCCc
Confidence 3555779999988776 78999988775
No 25
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=38.11 E-value=19 Score=31.68 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=26.7
Q ss_pred ccCCCCCCCcccchhhhh--------hhhhhhhhhhhhhhhhhHH
Q 032850 65 NSEGGRANSAGFFVGGFV--------LGGIIVGTLGCVYAPQISK 101 (132)
Q Consensus 65 y~~~gR~g~~G~FlaGfl--------lGG~V~G~LG~vfAPQIsk 101 (132)
|+=.+|+|.+-||++|++ +|++|.|.|..-+.-.+.|
T Consensus 78 ~SIa~kpglapg~i~G~~a~~~~~GFlGaii~G~laGy~v~~lkk 122 (359)
T PRK10478 78 YSIADRSALAPCAIGAWVGNSFGAGFFGALIAGIIGGIVVHYLKK 122 (359)
T ss_pred HHHcCCccccHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHh
Confidence 555668999999999988 7888888765444434444
No 26
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=36.62 E-value=19 Score=31.29 Aligned_cols=25 Identities=20% Similarity=0.547 Sum_probs=17.0
Q ss_pred CCCCcccchhhhhhhhhhhhhhhhhhh
Q 032850 70 RANSAGFFVGGFVLGGIIVGTLGCVYA 96 (132)
Q Consensus 70 R~g~~G~FlaGfllGG~V~G~LG~vfA 96 (132)
|++---.|+ .|+|+++||++||.++
T Consensus 333 rd~Pkr~lI--lvl~~llG~~lg~~~v 357 (377)
T PRK10381 333 KDGPGKALI--VILAALIGGMLACGFV 357 (377)
T ss_pred CCCcchhHH--HHHHHHHHHHHHHHHH
Confidence 444444555 5788888888888665
No 27
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=36.36 E-value=19 Score=28.83 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=10.6
Q ss_pred hhhhhhhhhhhhhh
Q 032850 82 VLGGIIVGTLGCVY 95 (132)
Q Consensus 82 llGG~V~G~LG~vf 95 (132)
+.|++|||++|++.
T Consensus 347 inGallG~liG~~~ 360 (367)
T PF04286_consen 347 INGALLGGLIGLLQ 360 (367)
T ss_pred hhhHHHHHHHHHHH
Confidence 57788888888765
No 28
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=36.00 E-value=22 Score=25.30 Aligned_cols=18 Identities=28% Similarity=0.737 Sum_probs=13.5
Q ss_pred hhhhhhhhhhhhhhhhHH
Q 032850 84 GGIIVGTLGCVYAPQISK 101 (132)
Q Consensus 84 GG~V~G~LG~vfAPQIsk 101 (132)
-|++.|++|.++||.+.-
T Consensus 50 ~gv~~g~i~~~~aP~la~ 67 (84)
T PF14242_consen 50 AGVAAGVIGALLAPVLAA 67 (84)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 356777888999998753
No 29
>PTZ00234 variable surface protein Vir12; Provisional
Probab=35.87 E-value=22 Score=32.06 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=19.9
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhhhHHHh
Q 032850 75 GFFVGGFVLGGIIVGTLGCVYAPQISKAL 103 (132)
Q Consensus 75 G~FlaGfllGG~V~G~LG~vfAPQIskaL 103 (132)
+-|+==.|+|-+|.||+=++|-=-.+-.|
T Consensus 361 Sn~~rniim~~ailGtifFlfyyn~ss~l 389 (433)
T PTZ00234 361 SEYFRHSIVGASIIGVLVFLFFFFKSTPI 389 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 34666678999999998888854444333
No 30
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=35.40 E-value=24 Score=28.32 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=10.3
Q ss_pred chhhhhhhhhhhhhhhhhh
Q 032850 77 FVGGFVLGGIIVGTLGCVY 95 (132)
Q Consensus 77 FlaGfllGG~V~G~LG~vf 95 (132)
|+.=.++||+|||.+|++.
T Consensus 11 ~~~~illg~~iGg~~G~~~ 29 (248)
T PF11368_consen 11 FLLLILLGGLIGGFIGFFI 29 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555566666665543
No 31
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=34.68 E-value=18 Score=25.55 Aligned_cols=19 Identities=21% Similarity=0.143 Sum_probs=14.1
Q ss_pred CCCCCCCcccchhhhhhhh
Q 032850 67 EGGRANSAGFFVGGFVLGG 85 (132)
Q Consensus 67 ~~gR~g~~G~FlaGfllGG 85 (132)
||.-+...+|+++|.++|-
T Consensus 82 ~D~~N~~~aG~~aGa~~~~ 100 (128)
T PF02466_consen 82 DDPWNSAIAGAAAGAVLGL 100 (128)
T ss_pred cccchhHHHHHHHHHHHHh
Confidence 5667788888888887653
No 32
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=34.49 E-value=24 Score=32.24 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=34.8
Q ss_pred CCcccccCCCcceeeeeccCcccceEEeeccCCC-CC--CCcccchhhhhhhhhhhhhhhhhhhhhhH
Q 032850 36 PANLSFSPNHQWKVQLSSSRRRPFKVHASNSEGG-RA--NSAGFFVGGFVLGGIIVGTLGCVYAPQIS 100 (132)
Q Consensus 36 ~~~ls~~~~~~~~~~~~~~~~r~~~v~A~y~~~g-R~--g~~G~FlaGfllGG~V~G~LG~vfAPQIs 100 (132)
|..|.|+..++..+.....-.-.++|++++.+.= ++ =-+-||+.||+| ++|.+.++|.+.-+.+
T Consensus 26 PA~LTf~s~s~n~~~~~~~l~a~~t~~~~e~~~vlpNHGlhaagFfvaflv-slVL~~l~~f~l~r~~ 92 (429)
T PF12297_consen 26 PAQLTFQSSSQNRTSNSTQLKALFTITVEEKISVLPNHGLHAAGFFVAFLV-SLVLTWLCFFLLARTR 92 (429)
T ss_pred cceeeeecchhhhhhcccchhhhheeeccccceeccCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 4555555544433311111133467777765421 12 124578887776 5788888888876654
No 33
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=34.40 E-value=25 Score=24.38 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=18.6
Q ss_pred cchhhhhhhhhhhhhhhhhhhhh
Q 032850 76 FFVGGFVLGGIIVGTLGCVYAPQ 98 (132)
Q Consensus 76 ~FlaGfllGG~V~G~LG~vfAPQ 98 (132)
+++.+|++.-++-|.||+++||-
T Consensus 37 ~~v~~~~~~c~~S~~lG~~~~~~ 59 (60)
T PF06072_consen 37 AIVFAVVALCVLSGGLGALVAWH 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 56677888888889999999874
No 34
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=32.82 E-value=20 Score=30.91 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=15.7
Q ss_pred CCCcccchhhhhhhhhhhhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGIIVGTLGCVYA 96 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~V~G~LG~vfA 96 (132)
++---.|+ .|+|+++||++||.++
T Consensus 312 D~Pkr~lI--lil~~llG~~lg~~~v 335 (342)
T PRK11638 312 DSPRRAFL--MIMWGAVGALVGAGVA 335 (342)
T ss_pred CCCchhHH--HHHHHHHHHHHHheee
Confidence 33334455 5788888888888654
No 35
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=32.76 E-value=41 Score=21.31 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=17.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhH
Q 032850 78 VGGFVLGGIIVGTLGCVYAPQIS 100 (132)
Q Consensus 78 laGfllGG~V~G~LG~vfAPQIs 100 (132)
+-.++++|+|.++.+..+-|-++
T Consensus 11 lmN~ll~Gava~~a~~~lyP~~~ 33 (39)
T PF08802_consen 11 LMNLLLGGAVAVPAGGMLYPYVK 33 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhhhhee
Confidence 45688999999988888777543
No 36
>PRK11280 hypothetical protein; Provisional
Probab=32.17 E-value=19 Score=28.97 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=17.2
Q ss_pred hhhhhhhhhhhhhhhHHHhhhhhhhhH
Q 032850 85 GIIVGTLGCVYAPQISKALAGAAADRK 111 (132)
Q Consensus 85 G~V~G~LG~vfAPQIskaL~~~~~D~~ 111 (132)
.++++++|.+...+|.+.+.. .|.+
T Consensus 92 t~~Ga~~G~~~G~~i~~~~~~--~d~~ 116 (170)
T PRK11280 92 TVAGALGGGYAGNQIQGGMQE--RDTY 116 (170)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--cccc
Confidence 455667778888888888766 4543
No 37
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=31.37 E-value=18 Score=23.16 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=18.2
Q ss_pred ccchhhhhhhhhhhh---hhhhhhhhhhH
Q 032850 75 GFFVGGFVLGGIIVG---TLGCVYAPQIS 100 (132)
Q Consensus 75 G~FlaGfllGG~V~G---~LG~vfAPQIs 100 (132)
..|+..++.|++|.+ +++-+|-+|-.
T Consensus 6 snF~~SL~~Ga~ivvipi~~aLifvSq~D 34 (39)
T CHL00114 6 SAFINSLLLGAIIVVIPITLALLFVSQKD 34 (39)
T ss_pred HHHHHHHHHHHHHhHHHhhhheEEEeccc
Confidence 368888899998877 34556666543
No 38
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=30.66 E-value=26 Score=28.41 Aligned_cols=22 Identities=36% Similarity=0.757 Sum_probs=14.1
Q ss_pred CCC-cccchhhhhhhhhhhhhhhhhh
Q 032850 71 ANS-AGFFVGGFVLGGIIVGTLGCVY 95 (132)
Q Consensus 71 ~g~-~G~FlaGfllGG~V~G~LG~vf 95 (132)
++| ++.||+|.|| +.|+++.+|
T Consensus 156 s~FD~~SFiGGIVL---~LGv~aI~f 178 (186)
T PF05283_consen 156 STFDAASFIGGIVL---TLGVLAIIF 178 (186)
T ss_pred CCCchhhhhhHHHH---HHHHHHHHH
Confidence 344 4577777775 567776665
No 39
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.47 E-value=76 Score=20.15 Aligned_cols=7 Identities=71% Similarity=0.909 Sum_probs=2.9
Q ss_pred hHHhhhc
Q 032850 125 EKALENL 131 (132)
Q Consensus 125 E~~lEkT 131 (132)
|+.+|+-
T Consensus 61 e~e~~~l 67 (68)
T PF06305_consen 61 EKELEQL 67 (68)
T ss_pred HHHHHhc
Confidence 3344443
No 40
>COG4371 Predicted membrane protein [Function unknown]
Probab=29.86 E-value=35 Score=30.17 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=19.5
Q ss_pred hhhhhhhhhhhhhhhhhhHHHhhh
Q 032850 82 VLGGIIVGTLGCVYAPQISKALAG 105 (132)
Q Consensus 82 llGG~V~G~LG~vfAPQIskaL~~ 105 (132)
|+|=+|||++...+-.-++|++-.
T Consensus 106 iFgilvf~aian~vv~~~Rr~~ss 129 (334)
T COG4371 106 IFGILVFGAIANGVVGMMRRNLSS 129 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 677789999998888888987643
No 41
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=29.74 E-value=29 Score=29.52 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=12.0
Q ss_pred cchhhhhhhhhhhhhhhh
Q 032850 76 FFVGGFVLGGIIVGTLGC 93 (132)
Q Consensus 76 ~FlaGfllGG~V~G~LG~ 93 (132)
-|=+|.++||++||+++.
T Consensus 170 SLG~gaaiGal~Gg~~~~ 187 (292)
T PF11981_consen 170 SLGAGAAIGALAGGAWQG 187 (292)
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 355677777777777544
No 42
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=29.62 E-value=33 Score=25.79 Aligned_cols=18 Identities=44% Similarity=0.872 Sum_probs=16.2
Q ss_pred hhhhhhhhhhhhhhhhhh
Q 032850 80 GFVLGGIIVGTLGCVYAP 97 (132)
Q Consensus 80 GfllGG~V~G~LG~vfAP 97 (132)
|.++||.+.|-+|.++.-
T Consensus 12 GVvlGGsliGglga~l~~ 29 (102)
T PF14034_consen 12 GVVLGGSLIGGLGAFLTG 29 (102)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 889999999999999864
No 43
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=29.57 E-value=39 Score=29.25 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=27.5
Q ss_pred eccCCCCCCCcccchhhhh--------hhhhhhhhhhhhhhhhhHHHh
Q 032850 64 SNSEGGRANSAGFFVGGFV--------LGGIIVGTLGCVYAPQISKAL 103 (132)
Q Consensus 64 ~y~~~gR~g~~G~FlaGfl--------lGG~V~G~LG~vfAPQIskaL 103 (132)
+|+-.+|.|.+-||++|++ +||++.|.+...++..+.|-+
T Consensus 83 a~Sia~k~g~~pG~i~G~~~~~~~~GflGgII~gilag~~~~~lek~i 130 (346)
T TIGR01427 83 AYSIADRPGLAPGMIAGLIANNFNSGFLGGIIAGFLAGYVVKGLQKYI 130 (346)
T ss_pred HHHHccCcCCcHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667888778888876 467777777666666666655
No 44
>KOG2408 consensus Peroxidase/oxygenase [General function prediction only]
Probab=27.89 E-value=26 Score=33.42 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.1
Q ss_pred hhhhhhhhhhhhhhhhhhHHHhhh
Q 032850 82 VLGGIIVGTLGCVYAPQISKALAG 105 (132)
Q Consensus 82 llGG~V~G~LG~vfAPQIskaL~~ 105 (132)
+-||+||=+++|++|+|..|.+.+
T Consensus 623 ~~g~~vGPTl~cii~~Qf~r~r~g 646 (719)
T KOG2408|consen 623 LPGGLVGPTLACIIAEQFLRLRDG 646 (719)
T ss_pred CCCceecccHHHHHHHHHHHHhcc
Confidence 468888889999999999999976
No 45
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.73 E-value=35 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=13.1
Q ss_pred CCcccchhhhhhhhhhhhhhhhhh
Q 032850 72 NSAGFFVGGFVLGGIIVGTLGCVY 95 (132)
Q Consensus 72 g~~G~FlaGfllGG~V~G~LG~vf 95 (132)
+|.++-++|. +.|+|+|++|.++
T Consensus 60 ~fs~~~i~~I-i~gv~aGvIg~Il 82 (122)
T PF01102_consen 60 RFSEPAIIGI-IFGVMAGVIGIIL 82 (122)
T ss_dssp SSS-TCHHHH-HHHHHHHHHHHHH
T ss_pred Cccccceeeh-hHHHHHHHHHHHH
Confidence 4445555554 4467777777664
No 46
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=27.70 E-value=23 Score=28.48 Aligned_cols=32 Identities=34% Similarity=0.613 Sum_probs=17.6
Q ss_pred cccceEEeeccCCCCCCCcccchhhhhhhhhhhh
Q 032850 56 RRPFKVHASNSEGGRANSAGFFVGGFVLGGIIVG 89 (132)
Q Consensus 56 ~r~~~v~A~y~~~gR~g~~G~FlaGfllGG~V~G 89 (132)
.|++.|++. +...=+..+|+-|+|| +|-.|+|
T Consensus 49 vRpV~Iq~d-~q~vvG~igG~~lGG~-~g~~iGg 80 (154)
T COG3133 49 VRPVKIQGD-DQNVIGAIGGAVLGGF-LGNTIGG 80 (154)
T ss_pred eeeeEEecC-CCccceeeccccccce-eeccccC
Confidence 588888843 2122334566666666 5544444
No 47
>PRK12509 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=27.24 E-value=43 Score=25.67 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=13.3
Q ss_pred CCCcccchhhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGII 87 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~V 87 (132)
+.-||||.+|.+++.++
T Consensus 30 ~~PGGGF~gGli~a~a~ 46 (137)
T PRK12509 30 NEPGGGFIGGLVAAAAF 46 (137)
T ss_pred CCCCccHHHHHHHHHHH
Confidence 45579999999888764
No 48
>PRK08387 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=27.22 E-value=42 Score=25.50 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=12.5
Q ss_pred CCCcccchhhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGII 87 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~V 87 (132)
+.-||||.+|.+++.++
T Consensus 29 ~~PGGGF~gGli~a~a~ 45 (131)
T PRK08387 29 LSPGGGFQAGVILAVAV 45 (131)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 45579999997776553
No 49
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=27.14 E-value=48 Score=25.22 Aligned_cols=27 Identities=7% Similarity=0.244 Sum_probs=21.2
Q ss_pred chhhhhhhhhhhhhhhhhhhhhhHHHh
Q 032850 77 FVGGFVLGGIIVGTLGCVYAPQISKAL 103 (132)
Q Consensus 77 FlaGfllGG~V~G~LG~vfAPQIskaL 103 (132)
-++|..+|++|.|+-||-|-+--...+
T Consensus 60 ~is~a~i~alViaIY~YTfYSikQErF 86 (108)
T KOG4782|consen 60 HISFAGIGALVIAIYGYTFYSIKQERF 86 (108)
T ss_pred hhhhHHHHHHHHHhhhheeeehhHHHH
Confidence 578899999999999998876433333
No 50
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=26.98 E-value=35 Score=23.19 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=23.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhhhHHHHhhC
Q 032850 78 VGGFVLGGIIVGTLGCVYAPQISKALAGAAADRKDLMRKL 117 (132)
Q Consensus 78 laGfllGG~V~G~LG~vfAPQIskaL~~~~~D~~~l~~~~ 117 (132)
+.++.+|+.++ .+++.+|-+-++|.. +.--.+++++
T Consensus 2 ~~~~w~G~~~~--~~fvvap~lF~~L~~--~~ag~i~~~l 37 (101)
T PF13664_consen 2 LLALWLGSMVF--FTFVVAPVLFKALPR--QQAGKIQGKL 37 (101)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCH--HHHHHHHHHH
Confidence 45777888776 456889999999844 3333344444
No 51
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=26.83 E-value=39 Score=28.89 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhH
Q 032850 78 VGGFVLGGIIVGTLGCVYAPQIS 100 (132)
Q Consensus 78 laGfllGG~V~G~LG~vfAPQIs 100 (132)
+.-|++|+++.|+.|.+||+|..
T Consensus 208 l~aF~isa~~AGiAGaL~a~~~~ 230 (314)
T COG4177 208 LLAFVISAAIAGIAGALYALYLG 230 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56799999999999999999954
No 52
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=26.73 E-value=16 Score=29.35 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=8.5
Q ss_pred ccchhhhhhhhhhhhh
Q 032850 75 GFFVGGFVLGGIIVGT 90 (132)
Q Consensus 75 G~FlaGfllGG~V~G~ 90 (132)
|+-+.|..++|||||+
T Consensus 55 ~~~lsgtAIaGIVfgi 70 (155)
T PF10873_consen 55 GDVLSGTAIAGIVFGI 70 (155)
T ss_pred ccccccceeeeeehhh
Confidence 3444555555555554
No 53
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=25.83 E-value=41 Score=22.42 Aligned_cols=17 Identities=41% Similarity=0.835 Sum_probs=14.6
Q ss_pred hhhhhhhhhhhHHHhhh
Q 032850 89 GTLGCVYAPQISKALAG 105 (132)
Q Consensus 89 G~LG~vfAPQIskaL~~ 105 (132)
|+||++|-.+|.+.+..
T Consensus 1 gi~~~v~r~~i~~~i~~ 17 (100)
T cd03154 1 GIVGAVYKPKIENELKE 17 (100)
T ss_pred CEEEEEeHHHHHHHHHH
Confidence 68999999999988855
No 54
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=25.56 E-value=64 Score=25.96 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=16.1
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhh
Q 032850 75 GFFVGGFVLGGIIVGTLGCVYAPQ 98 (132)
Q Consensus 75 G~FlaGfllGG~V~G~LG~vfAPQ 98 (132)
.+-+.|..+|++++|.+|+..-.|
T Consensus 61 ~~a~~ga~~G~~~G~~~g~~~d~q 84 (219)
T PRK10510 61 KGALIGAAAGAALGGGVGYYMDVQ 84 (219)
T ss_pred chhhhHhHHHhhhhhhhhhhhhhH
Confidence 355667777777777777766444
No 55
>PRK12508 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=25.52 E-value=46 Score=25.45 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=12.6
Q ss_pred CCCcccchhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGI 86 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~ 86 (132)
+.-||||.+|.|++.+
T Consensus 31 ~~PGGGFqgG~i~a~a 46 (139)
T PRK12508 31 YGPGGGFQAGVIVASA 46 (139)
T ss_pred CCCCchHHHHHHHHHH
Confidence 4557999999988765
No 56
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.85 E-value=48 Score=25.63 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=12.9
Q ss_pred CCCcccchhhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGII 87 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~V 87 (132)
+.-||||.+|.+++.++
T Consensus 31 ~~PGGGF~gG~i~a~a~ 47 (151)
T PRK08386 31 LTPGGGFQGGATIAGGG 47 (151)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 45579999999887653
No 57
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=24.79 E-value=46 Score=27.56 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=23.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHhhh
Q 032850 78 VGGFVLGGIIVGTLGCVYAPQISKALAG 105 (132)
Q Consensus 78 laGfllGG~V~G~LG~vfAPQIskaL~~ 105 (132)
+-+.+.||-++|.+|.++||-+--.+..
T Consensus 308 lisll~g~~l~G~~G~ila~pl~~~~k~ 335 (355)
T COG0628 308 LLSLLGGGSLFGFVGLILAPPLAAVLKV 335 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998766644
No 58
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.22 E-value=49 Score=26.19 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=12.8
Q ss_pred CCCcccchhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGI 86 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~ 86 (132)
+.-||||.+|.|++.+
T Consensus 43 ~~PGGGFqgGlI~Aaa 58 (159)
T PRK12505 43 DSPGGGFQGGVIVASV 58 (159)
T ss_pred CCCCchHHHHHHHHHH
Confidence 4557999999998765
No 59
>PF04039 MnhB: Domain related to MnhB subunit of Na+/H+ antiporter; InterPro: IPR007182 This domain is found in a possible subunit of the Na+/H+ antiporter [, ] as well as in the bacterial NADH dehydrogenase subunit. Usually four transmembrane regions are found in this domain.
Probab=24.12 E-value=53 Score=23.67 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=13.1
Q ss_pred CCCcccchhhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGII 87 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~V 87 (132)
..-||||.+|.+++.++
T Consensus 28 ~sPGGGFqgG~ila~a~ 44 (124)
T PF04039_consen 28 LSPGGGFQGGVILAAAF 44 (124)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 44579999999988654
No 60
>PRK12573 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.00 E-value=53 Score=25.18 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=13.0
Q ss_pred CCCcccchhhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGII 87 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~V 87 (132)
+.-||||.+|.|++-++
T Consensus 32 ~~PGGGF~gGli~a~a~ 48 (140)
T PRK12573 32 NEPGGGFIGGLITASAL 48 (140)
T ss_pred CCCCccHHHHHHHHHHH
Confidence 45579999998887654
No 61
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.65 E-value=48 Score=28.72 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=4.7
Q ss_pred CCCCcccchh
Q 032850 70 RANSAGFFVG 79 (132)
Q Consensus 70 R~g~~G~Fla 79 (132)
|+++.++|++
T Consensus 25 ~p~~~~~~~g 34 (281)
T COG4395 25 RPSFFSGMLG 34 (281)
T ss_pred Ccchhhhhhh
Confidence 3455555443
No 62
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=23.12 E-value=55 Score=27.92 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=3.3
Q ss_pred ecCCcccCc
Q 032850 18 LSSGSFLKP 26 (132)
Q Consensus 18 ~s~gssl~~ 26 (132)
||.--+|.|
T Consensus 39 MS~TIfLdP 47 (243)
T PRK13731 39 MSETIWLEP 47 (243)
T ss_pred ccccEEEcC
Confidence 333333333
No 63
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=22.96 E-value=44 Score=22.18 Aligned_cols=13 Identities=38% Similarity=1.019 Sum_probs=9.9
Q ss_pred cchhhhhhhhhhh
Q 032850 76 FFVGGFVLGGIIV 88 (132)
Q Consensus 76 ~FlaGfllGG~V~ 88 (132)
-|+.|.++|++|.
T Consensus 49 ~fl~Gl~~g~~l~ 61 (62)
T PF14241_consen 49 AFLAGLILGGFLA 61 (62)
T ss_pred HHHHHHHHHHHHh
Confidence 5888888888764
No 64
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=22.72 E-value=1.2e+02 Score=22.36 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=8.3
Q ss_pred chhhhhhhhhhhhhhhhhhh
Q 032850 77 FVGGFVLGGIIVGTLGCVYA 96 (132)
Q Consensus 77 FlaGfllGG~V~G~LG~vfA 96 (132)
...|.++|.++++++|.++-
T Consensus 52 ~~~ga~~GA~~GA~~Ga~~G 71 (118)
T PF13436_consen 52 TAGGAAIGAAAGAAIGAIIG 71 (118)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 33444444444444444433
No 65
>PRK12574 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=22.72 E-value=58 Score=25.01 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=13.0
Q ss_pred CCCcccchhhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGII 87 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~V 87 (132)
+.-||||.+|.|++-++
T Consensus 32 ~~PGGGF~gGli~a~a~ 48 (141)
T PRK12574 32 NNPGGGFIGGLIFSSAF 48 (141)
T ss_pred CCCCccHHHHHHHHHHH
Confidence 45579999999887654
No 66
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=22.55 E-value=62 Score=25.81 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=14.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhh
Q 032850 79 GGFVLGGIIVGTLGCVYAPQI 99 (132)
Q Consensus 79 aGfllGG~V~G~LG~vfAPQI 99 (132)
+-+|++|+|+|++++...+..
T Consensus 18 ~~ll~~g~~~G~~~~~~~~~~ 38 (185)
T TIGR02161 18 GTLLLGGFVGGIVFWGGFNTG 38 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888777655443
No 67
>PF09880 DUF2107: Predicted membrane protein (DUF2107); InterPro: IPR011317 [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions [NiFe] hydrogenases consist of two subunits, hydrogenase large and hydrogenase small. The large subunit contains the binuclear [NiFe] active site, while the small subunit binds at least one [4Fe-4S] cluster []. Energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type) form a distinct group within the [NiFe] hydrogenase family [, ]. Members of this subgroup include: Hydrogenase 3 and 4 (Hyc and Hyf) from Escherichia coli CO-induced hydrogenase (Coo) from Rhodospirillum rubrum Mbh hydrogenase from Pyrococcus furiosus Eha and Ehb hydrogenases from Methanothermobacter species Ech hydrogenase from Methanosarcina barkeri Energy-converting [NiFe] hydrogenases are membrane-bound enzymes with a six-subunit core: the large and small hydrogenase subunits, plus two hydrophilic proteins and two integral membrane proteins. Their large and small subunits show little sequence similarity to other [NiFe] hydrogenases, except for key conserved residues coordinating the active site and [FeS] cluster. However, they show considerable sequence similarity to the six-subunit, energy-conserving NADH:quinone oxidoreductases (complex I), which are present in cytoplasmic membranes of many bacteria and in inner mitochondrial membranes. However, the reactions they catalyse differ significantly from complex I. Energy-converting [NiFe] hydrogenases function as ion pumps. Eha and Ehb hydrogenases contain extra subunits in addition to those shared by other energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type). Eha contains a 6[4Fe-4S] polyferredoxin, a 10[4F-4S] polyferredoxin, ten other predicted integral membrane proteins (EhaA IPR011306 from INTERPRO, EhaB IPR011314 from INTERPRO, EhaC IPR011316 from INTERPRO, EhaD IPR011308 from INTERPRO, EhaE IPR011317 from INTERPRO, EhaF IPR011313 from INTERPRO, EhaG IPR011311 from INTERPRO, EhaI IPR011318 from INTERPRO, EhaK IPR011319 from INTERPRO, EhaL IPR011305 from INTERPRO) and four hydrophobic subunits (EhaM, EhaR IPR014502 from INTERPRO, EhS, EhT) []. The ten predicted integral membrane proteins are absent from Ech, Coo, Hyc and Hyf complexes, which may have simpler membrane components than Eha. Eha and Ehb catalyse the reduction of low-potential redox carriers (e.g. ferredoxins or polyferredoxins), which then might function as electron donors to oxidoreductases. Based on sequence similarity and genome context analysis, other organisms such as Methanopyrus kandleri, Methanocaldococcus jannaschii, and Methanothermobacter marburgensis also encode Eha-like [NiFe]-hydrogenase-3-type complexes and have very similar eha operon structure. This entry represents small membrane proteins that are predicted to be the EhaE transmembrane subunits of multi-subunit membrane-bound [NiFe]-hydrogenase Eha complexes.
Probab=22.55 E-value=44 Score=24.14 Aligned_cols=18 Identities=39% Similarity=0.999 Sum_probs=15.3
Q ss_pred hhhhhhhhhhhhhhHHHh
Q 032850 86 IIVGTLGCVYAPQISKAL 103 (132)
Q Consensus 86 ~V~G~LG~vfAPQIskaL 103 (132)
+|.|++|.++.|+.+.-+
T Consensus 8 lIiGtigt~~GP~~~dpl 25 (76)
T PF09880_consen 8 LIIGTIGTVFGPRVKDPL 25 (76)
T ss_pred HHHhHHHHhcCCCCCCHH
Confidence 689999999999976555
No 68
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=22.54 E-value=54 Score=28.29 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhhhhhhhhh
Q 032850 78 VGGFVLGGIIVGTLGCVYA 96 (132)
Q Consensus 78 laGfllGG~V~G~LG~vfA 96 (132)
+.||++|-+..|.|+++.+
T Consensus 216 v~g~~~G~~~L~ll~~lv~ 234 (278)
T PF06697_consen 216 VVGVVGGVVLLGLLSLLVA 234 (278)
T ss_pred EEEehHHHHHHHHHHHHHH
Confidence 4455555555566655544
No 69
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.33 E-value=54 Score=27.13 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=15.5
Q ss_pred ccchhhhhhhhhhhhhhhhhhh
Q 032850 75 GFFVGGFVLGGIIVGTLGCVYA 96 (132)
Q Consensus 75 G~FlaGfllGG~V~G~LG~vfA 96 (132)
-||+.|=++|.++|.+||-+|-
T Consensus 12 ~G~~~~g~~Ga~~G~~~Gh~~d 33 (267)
T PRK09430 12 FGFLFGGFFGALLGLLIGHMFD 33 (267)
T ss_pred HHHHHhhHHHHHHHHHHHhHHh
Confidence 3555555788888888887774
No 70
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=22.09 E-value=76 Score=24.95 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=16.6
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHh
Q 032850 80 GFVLGGIIVGTLGCVYAPQISKAL 103 (132)
Q Consensus 80 GfllGG~V~G~LG~vfAPQIskaL 103 (132)
-.|++.+||.++||++.-.+.+..
T Consensus 5 ~~i~~~~vG~~~G~~~~~~~~~~~ 28 (201)
T PF12072_consen 5 IAIVALIVGIGIGYLVRKKINRKK 28 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777788888876665544
No 71
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.74 E-value=64 Score=21.77 Aligned_cols=8 Identities=50% Similarity=0.970 Sum_probs=4.8
Q ss_pred chhhhhhh
Q 032850 77 FVGGFVLG 84 (132)
Q Consensus 77 FlaGfllG 84 (132)
|.-||++|
T Consensus 4 F~~G~l~G 11 (54)
T PF11240_consen 4 FGKGFLTG 11 (54)
T ss_pred hhhhHHHh
Confidence 55566665
No 72
>TIGR00943 2a6301s02 monovalent cation:proton antiporter. This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter.This family is specific for the phaB and mnhB proteins.
Probab=21.47 E-value=64 Score=23.70 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=12.8
Q ss_pred CCCcccchhhhhhhhhh
Q 032850 71 ANSAGFFVGGFVLGGII 87 (132)
Q Consensus 71 ~g~~G~FlaGfllGG~V 87 (132)
+.-+|||.+|.|++.++
T Consensus 7 ~~PGGGF~gGli~a~a~ 23 (107)
T TIGR00943 7 NAPGGGFVAGLLTASSL 23 (107)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 44569999999887654
No 73
>PRK10540 lipoprotein; Provisional
Probab=21.20 E-value=41 Score=23.45 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=4.8
Q ss_pred hhhhhhhhhhhh
Q 032850 87 IVGTLGCVYAPQ 98 (132)
Q Consensus 87 V~G~LG~vfAPQ 98 (132)
+++++|.+.-.+
T Consensus 58 ~Ga~~G~~~G~~ 69 (72)
T PRK10540 58 GGAAVGGVIGHQ 69 (72)
T ss_pred HHHHHHHHHhHh
Confidence 333444444333
No 74
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=20.92 E-value=37 Score=32.20 Aligned_cols=48 Identities=29% Similarity=0.518 Sum_probs=34.9
Q ss_pred hhhhhhhhhhhhhhhhhhHHHhhhhh---hhhHHHHhhCCCcccchhHHhhh
Q 032850 82 VLGGIIVGTLGCVYAPQISKALAGAA---ADRKDLMRKLPKFIYDEEKALEN 130 (132)
Q Consensus 82 llGG~V~G~LG~vfAPQIskaL~~~~---~D~~~l~~~~~k~~yDeE~~lEk 130 (132)
++|+.--|+-|+++-|+.=+...+.. -|..++.|+...-+||+|| .|+
T Consensus 176 ~IG~~smGi~gs~vd~~f~q~~lGmrvE~vD~~EivrR~~~~iyd~eE-~e~ 226 (587)
T TIGR01089 176 SLGSVSMGIAGSIVNHNFFQEYLGMRNEAVDMTEIRRRIDQKIYDEEE-LEM 226 (587)
T ss_pred EECCccCcccccCCCHHHHHHHhCCeeEEecHHHHHHHHhccCCCHHH-HHH
Confidence 46888889999999987655554532 4888888888766888764 444
No 75
>PF03035 RNA_capsid: Calicivirus putative RNA polymerase/capsid protein; InterPro: IPR004278 Caliciviruses are a small round-structured virus group defined by RNA-dependent RNA polymerase and capsid diversity.
Probab=20.88 E-value=66 Score=27.28 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=21.1
Q ss_pred hhhhhhhh----hhhhhhhhhhhhhHHHhhhhhhhhHHHHhhCCC--cccchh
Q 032850 79 GGFVLGGI----IVGTLGCVYAPQISKALAGAAADRKDLMRKLPK--FIYDEE 125 (132)
Q Consensus 79 aGfllGG~----V~G~LG~vfAPQIskaL~~~~~D~~~l~~~~~k--~~yDeE 125 (132)
||.++||+ +++.+|.++--.....+. ..++++-+.+.. |-+|.|
T Consensus 2 AgAf~a~lAgd~~g~~vgslI~AGAnAinQ---~~ef~~n~~LQ~~SF~HDke 51 (226)
T PF03035_consen 2 AGAFIAGLAGDALGSGVGSLINAGANAINQ---KQEFQFNKQLQSNSFQHDKE 51 (226)
T ss_pred cHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHH
Confidence 44455555 555555555555444443 344444444433 444543
No 76
>COG3134 Predicted outer membrane lipoprotein [Function unknown]
Probab=20.77 E-value=43 Score=27.41 Aligned_cols=18 Identities=33% Similarity=0.726 Sum_probs=10.9
Q ss_pred hhhhhhhhhhhhhhhhhh
Q 032850 78 VGGFVLGGIIVGTLGCVY 95 (132)
Q Consensus 78 laGfllGG~V~G~LG~vf 95 (132)
++|.++|.+++|+||--|
T Consensus 71 iaGt~iGAv~GGl~G~Q~ 88 (179)
T COG3134 71 IAGSVLGAVAGGVIGHQF 88 (179)
T ss_pred chhhhhHHHhhhhccccc
Confidence 566666666666666444
Done!