Query 032850
Match_columns 132
No_of_seqs 47 out of 49
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 10:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ldt_A Outer membrane protein, 64.9 1.6 5.3E-05 32.2 0.3 20 78-97 3-22 (169)
2 2l2t_A Receptor tyrosine-prote 45.6 8.9 0.0003 23.9 1.4 14 81-94 11-24 (44)
3 2ks1_B Epidermal growth factor 38.5 8.6 0.00029 23.8 0.5 9 84-92 15-23 (44)
4 1kvd_A SMK toxin; halotolerant 34.9 8.1 0.00028 25.7 -0.0 14 83-96 25-38 (63)
5 2k1k_A Ephrin type-A receptor 32.6 25 0.00085 20.9 1.9 17 72-88 7-23 (38)
6 3arc_X Photosystem II PSBX pro 26.4 31 0.0011 21.1 1.6 17 76-92 8-24 (39)
7 2wsc_L Photosystem I reaction 24.0 15 0.0005 29.8 -0.3 26 72-97 182-207 (216)
8 3bz1_X Photosystem II PSBX pro 22.3 40 0.0014 21.7 1.6 18 75-92 17-34 (50)
9 1bts_A BAND 3 anion transport 22.2 36 0.0012 18.9 1.2 17 82-98 7-23 (26)
10 2j7a_C Cytochrome C quinol deh 21.7 26 0.0009 25.0 0.7 11 81-91 15-25 (159)
11 1jb0_L Photosystem 1 reaction 21.6 23 0.00079 27.3 0.4 27 73-99 116-142 (154)
No 1
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=64.85 E-value=1.6 Score=32.16 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=2.8
Q ss_pred hhhhhhhhhhhhhhhhhhhh
Q 032850 78 VGGFVLGGIIVGTLGCVYAP 97 (132)
Q Consensus 78 laGfllGG~V~G~LG~vfAP 97 (132)
|.|.++|.+|+|++|+++.-
T Consensus 3 ~~ga~~ga~~g~~~g~~ig~ 22 (169)
T 3ldt_A 3 LSGTLIGAAAGGTVGLVASI 22 (169)
T ss_dssp --------------CCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=45.59 E-value=8.9 Score=23.86 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=7.5
Q ss_pred hhhhhhhhhhhhhh
Q 032850 81 FVLGGIIVGTLGCV 94 (132)
Q Consensus 81 fllGG~V~G~LG~v 94 (132)
.|.+|+|+|+++.+
T Consensus 11 aIA~gVVgGv~~v~ 24 (44)
T 2l2t_A 11 LIAAGVIGGLFILV 24 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHH
Confidence 35555555555543
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=38.51 E-value=8.6 Score=23.80 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.4
Q ss_pred hhhhhhhhh
Q 032850 84 GGIIVGTLG 92 (132)
Q Consensus 84 GG~V~G~LG 92 (132)
+|+|+|+++
T Consensus 15 ~gVVgGv~~ 23 (44)
T 2ks1_B 15 TGMVGALLL 23 (44)
T ss_dssp HHHHHHHHH
T ss_pred eehhHHHHH
Confidence 333333333
No 4
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=34.90 E-value=8.1 Score=25.71 Aligned_cols=14 Identities=43% Similarity=1.025 Sum_probs=8.4
Q ss_pred hhhhhhhhhhhhhh
Q 032850 83 LGGIIVGTLGCVYA 96 (132)
Q Consensus 83 lGG~V~G~LG~vfA 96 (132)
+||+.+|++||+.|
T Consensus 25 fgglaggivgciaa 38 (63)
T 1kvd_A 25 FGGLAGGIVGCIAA 38 (63)
T ss_dssp CTTCCSHHHHHHHH
T ss_pred cccccchHHHHHHH
Confidence 45666666666554
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.64 E-value=25 Score=20.89 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=10.7
Q ss_pred CCcccchhhhhhhhhhh
Q 032850 72 NSAGFFVGGFVLGGIIV 88 (132)
Q Consensus 72 g~~G~FlaGfllGG~V~ 88 (132)
+-.+|-++|.++|.+++
T Consensus 7 ~ls~GaIAGiVvG~v~g 23 (38)
T 2k1k_A 7 GLTGGEIVAVIFGLLLG 23 (38)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCCCceeeeehHHHHH
Confidence 33467777777776543
No 6
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=26.39 E-value=31 Score=21.12 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=11.8
Q ss_pred cchhhhhhhhhhhhhhh
Q 032850 76 FFVGGFVLGGIIVGTLG 92 (132)
Q Consensus 76 ~FlaGfllGG~V~G~LG 92 (132)
.|+..++.||+|.++++
T Consensus 8 nFl~Sl~aG~vvvv~i~ 24 (39)
T 3arc_X 8 GFFIGLLSGAVVLGLTF 24 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57777777887666543
No 7
>2wsc_L Photosystem I reaction center subunit XI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_L* 2wsf_L* 2o01_L* 3lw5_L*
Probab=24.02 E-value=15 Score=29.78 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=21.0
Q ss_pred CCcccchhhhhhhhhhhhhhhhhhhh
Q 032850 72 NSAGFFVGGFVLGGIIVGTLGCVYAP 97 (132)
Q Consensus 72 g~~G~FlaGfllGG~V~G~LG~vfAP 97 (132)
.++..|-+||++||+=+-+.+|++-.
T Consensus 182 ~GWs~Ft~GF~iGG~GGA~fAy~Ll~ 207 (216)
T 2wsc_L 182 DGWAKFTGGFFFGGVSGVTWACFLMY 207 (216)
T ss_dssp HHHHHHHHHHHHHHBTTTHHHHHSCC
T ss_pred ccHHHhccceeeccccHHHHHHHHHh
Confidence 35789999999999888888887653
No 8
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=22.34 E-value=40 Score=21.67 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.9
Q ss_pred ccchhhhhhhhhhhhhhh
Q 032850 75 GFFVGGFVLGGIIVGTLG 92 (132)
Q Consensus 75 G~FlaGfllGG~V~G~LG 92 (132)
..|+..++.||+|.++++
T Consensus 17 ~NFl~SlvaG~vVvv~i~ 34 (50)
T 3bz1_X 17 KGFFIGLLSGAVVLGLTF 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468888888887766644
No 9
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=22.16 E-value=36 Score=18.89 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=10.6
Q ss_pred hhhhhhhhhhhhhhhhh
Q 032850 82 VLGGIIVGTLGCVYAPQ 98 (132)
Q Consensus 82 llGG~V~G~LG~vfAPQ 98 (132)
|++.+++|++-++|+-|
T Consensus 7 i~s~ai~Gi~f~lf~gQ 23 (26)
T 1bts_A 7 LISTAVQGILFALLGAX 23 (26)
T ss_dssp HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 56666777766666644
No 10
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=21.67 E-value=26 Score=25.01 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=4.4
Q ss_pred hhhhhhhhhhh
Q 032850 81 FVLGGIIVGTL 91 (132)
Q Consensus 81 fllGG~V~G~L 91 (132)
+|++|+|+|++
T Consensus 15 ~~~~g~~~g~~ 25 (159)
T 2j7a_C 15 LVLGGATLGVV 25 (159)
T ss_dssp CSTTTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 11
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=21.59 E-value=23 Score=27.30 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=22.1
Q ss_pred Ccccchhhhhhhhhhhhhhhhhhhhhh
Q 032850 73 SAGFFVGGFVLGGIIVGTLGCVYAPQI 99 (132)
Q Consensus 73 ~~G~FlaGfllGG~V~G~LG~vfAPQI 99 (132)
++..|-+||++||+=+-+.+|++-..+
T Consensus 116 gWs~Ft~GF~iGg~GGa~~Ay~Ll~~~ 142 (154)
T 1jb0_L 116 GWSQFTAGFFVGAMGSAFVAFFLLENF 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cHhHcccceeeecccHHHHHHHHHhcc
Confidence 477899999999988888888876554
Done!