Query 032854
Match_columns 132
No_of_seqs 108 out of 1158
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01518 RHOD_YceA Member of th 99.9 1.5E-24 3.2E-29 135.8 9.2 97 6-111 2-100 (101)
2 PRK00162 glpE thiosulfate sulf 99.9 1.6E-24 3.5E-29 137.1 8.4 104 4-120 3-106 (108)
3 cd01533 4RHOD_Repeat_2 Member 99.9 1.5E-24 3.2E-29 137.5 7.8 100 4-114 8-109 (109)
4 PLN02160 thiosulfate sulfurtra 99.9 3.8E-24 8.3E-29 140.7 8.9 112 4-125 13-134 (136)
5 cd01527 RHOD_YgaP Member of th 99.9 4.1E-24 8.8E-29 133.2 6.3 98 6-117 2-99 (99)
6 cd01531 Acr2p Eukaryotic arsen 99.9 4.6E-23 9.9E-28 131.5 10.6 108 5-113 1-112 (113)
7 cd01523 RHOD_Lact_B Member of 99.9 1.8E-23 3.9E-28 130.6 8.2 94 8-111 1-99 (100)
8 cd01443 Cdc25_Acr2p Cdc25 enzy 99.9 1.6E-22 3.5E-27 129.0 10.5 101 6-111 2-112 (113)
9 PF00581 Rhodanese: Rhodanese- 99.9 2.2E-23 4.7E-28 131.9 6.2 101 9-113 1-113 (113)
10 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 1.5E-22 3.2E-27 136.7 10.4 106 4-117 34-162 (162)
11 cd01534 4RHOD_Repeat_3 Member 99.9 4.2E-23 9.1E-28 127.8 7.0 92 8-111 1-94 (95)
12 cd01526 RHOD_ThiF Member of th 99.9 5.9E-23 1.3E-27 132.7 7.7 105 4-117 6-118 (122)
13 cd01528 RHOD_2 Member of the R 99.9 7.5E-23 1.6E-27 128.0 7.4 97 7-113 1-99 (101)
14 cd01521 RHOD_PspE2 Member of t 99.9 2.2E-22 4.8E-27 127.8 8.1 102 4-117 6-110 (110)
15 cd01520 RHOD_YbbB Member of th 99.9 4.9E-22 1.1E-26 129.4 9.1 95 8-112 1-126 (128)
16 cd01524 RHOD_Pyr_redox Member 99.9 3E-22 6.6E-27 122.8 7.0 89 8-111 1-89 (90)
17 cd01444 GlpE_ST GlpE sulfurtra 99.9 3E-22 6.6E-27 123.8 7.0 92 7-111 1-95 (96)
18 cd01447 Polysulfide_ST Polysul 99.9 2.7E-22 5.9E-27 125.5 6.6 98 8-114 1-103 (103)
19 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.4E-21 3.1E-26 126.0 10.0 100 7-114 1-122 (122)
20 cd01535 4RHOD_Repeat_4 Member 99.9 5E-22 1.1E-26 131.9 7.8 98 13-123 2-100 (145)
21 cd01530 Cdc25 Cdc25 phosphatas 99.9 6.7E-22 1.5E-26 127.6 8.0 105 6-111 2-120 (121)
22 cd01519 RHOD_HSP67B2 Member of 99.9 9.7E-22 2.1E-26 123.7 7.3 94 9-111 2-105 (106)
23 cd01525 RHOD_Kc Member of the 99.9 6.8E-22 1.5E-26 124.2 5.9 93 8-111 1-104 (105)
24 KOG1530 Rhodanese-related sulf 99.9 1E-21 2.2E-26 125.2 6.5 106 4-118 21-135 (136)
25 cd01522 RHOD_1 Member of the R 99.9 1.7E-21 3.8E-26 125.0 6.9 97 8-113 1-105 (117)
26 PRK11493 sseA 3-mercaptopyruva 99.8 6.7E-21 1.4E-25 138.8 10.2 111 6-124 5-140 (281)
27 PRK01415 hypothetical protein; 99.8 8E-21 1.7E-25 135.2 8.4 102 4-114 110-213 (247)
28 cd01449 TST_Repeat_2 Thiosulfa 99.8 8E-21 1.7E-25 121.7 7.6 95 8-111 1-117 (118)
29 PRK08762 molybdopterin biosynt 99.8 6.8E-21 1.5E-25 143.7 8.1 108 4-123 1-108 (376)
30 cd01529 4RHOD_Repeats Member o 99.8 5.1E-21 1.1E-25 118.6 5.7 84 19-111 10-95 (96)
31 PRK09629 bifunctional thiosulf 99.8 3.2E-20 6.9E-25 146.9 11.3 109 6-122 9-132 (610)
32 smart00450 RHOD Rhodanese Homo 99.8 1.5E-20 3.4E-25 115.8 7.1 88 20-116 3-100 (100)
33 PLN02723 3-mercaptopyruvate su 99.8 3.1E-20 6.7E-25 137.5 9.7 109 5-121 21-153 (320)
34 cd01532 4RHOD_Repeat_1 Member 99.8 3.4E-20 7.4E-25 114.2 6.8 85 16-111 5-91 (92)
35 PRK00142 putative rhodanese-re 99.8 6.6E-20 1.4E-24 135.2 9.4 101 4-113 110-212 (314)
36 PRK05320 rhodanese superfamily 99.8 5.6E-20 1.2E-24 132.2 8.6 100 5-113 109-216 (257)
37 cd00158 RHOD Rhodanese Homolog 99.8 8.1E-20 1.8E-24 110.9 6.5 88 13-111 2-89 (89)
38 COG0607 PspE Rhodanese-related 99.8 2.1E-19 4.6E-24 113.4 7.7 100 10-120 9-109 (110)
39 cd01445 TST_Repeats Thiosulfat 99.8 6.5E-19 1.4E-23 116.1 9.1 98 8-111 1-137 (138)
40 TIGR02981 phageshock_pspE phag 99.8 3.4E-19 7.5E-24 111.5 5.9 81 20-112 17-97 (101)
41 PRK11493 sseA 3-mercaptopyruva 99.8 1E-18 2.3E-23 127.3 8.7 104 8-120 155-280 (281)
42 PRK07878 molybdopterin biosynt 99.8 8.7E-19 1.9E-23 132.9 7.8 101 5-116 286-387 (392)
43 PLN02723 3-mercaptopyruvate su 99.8 2.3E-18 4.9E-23 127.6 9.4 105 8-121 192-319 (320)
44 PRK10287 thiosulfate:cyanide s 99.8 7.3E-19 1.6E-23 110.5 5.3 79 21-111 20-98 (104)
45 cd01446 DSP_MapKP N-terminal r 99.8 3.5E-18 7.7E-23 111.6 7.8 104 7-113 1-127 (132)
46 PRK09629 bifunctional thiosulf 99.7 9.8E-18 2.1E-22 132.9 10.7 108 7-123 148-275 (610)
47 COG2897 SseA Rhodanese-related 99.7 1.8E-17 3.8E-22 120.2 11.0 114 5-126 10-145 (285)
48 TIGR03167 tRNA_sel_U_synt tRNA 99.7 4.2E-18 9.1E-23 125.4 7.3 91 21-120 2-122 (311)
49 PRK07411 hypothetical protein; 99.7 8.1E-18 1.8E-22 127.5 7.5 103 4-117 280-386 (390)
50 PRK11784 tRNA 2-selenouridine 99.7 1.3E-17 2.7E-22 124.4 7.8 102 8-119 3-135 (345)
51 COG2897 SseA Rhodanese-related 99.7 1.5E-17 3.3E-22 120.5 7.5 107 6-121 156-284 (285)
52 PRK05597 molybdopterin biosynt 99.7 3.5E-17 7.5E-22 122.7 6.1 95 5-112 260-354 (355)
53 PRK05600 thiamine biosynthesis 99.7 1.7E-16 3.8E-21 119.4 5.9 93 6-108 271-369 (370)
54 COG1054 Predicted sulfurtransf 99.6 5.3E-15 1.1E-19 106.5 7.7 100 5-113 112-213 (308)
55 KOG3772 M-phase inducer phosph 99.6 7E-15 1.5E-19 107.2 7.5 112 4-115 154-278 (325)
56 KOG1529 Mercaptopyruvate sulfu 99.4 4.3E-12 9.4E-17 91.1 10.2 111 6-122 5-139 (286)
57 PRK01269 tRNA s(4)U8 sulfurtra 99.4 8.9E-13 1.9E-17 102.6 5.8 79 12-104 399-481 (482)
58 KOG2017 Molybdopterin synthase 99.3 3.5E-12 7.6E-17 93.8 5.3 101 5-113 316-419 (427)
59 COG5105 MIH1 Mitotic inducer, 99.1 1.2E-09 2.5E-14 79.8 9.2 115 4-126 240-370 (427)
60 KOG1529 Mercaptopyruvate sulfu 98.9 2.7E-09 6E-14 76.8 6.7 85 19-113 170-276 (286)
61 KOG1717 Dual specificity phosp 98.0 5.9E-06 1.3E-10 59.4 3.9 103 7-114 5-125 (343)
62 COG2603 Predicted ATPase [Gene 97.6 6.8E-05 1.5E-09 54.7 3.6 91 11-110 6-126 (334)
63 KOG3636 Uncharacterized conser 97.0 0.0036 7.7E-08 48.5 7.2 100 7-111 308-427 (669)
64 PF04273 DUF442: Putative phos 97.0 0.0015 3.2E-08 41.4 4.2 68 5-74 12-97 (110)
65 TIGR01244 conserved hypothetic 96.9 0.0069 1.5E-07 39.6 6.7 72 6-78 13-100 (135)
66 KOG1093 Predicted protein kina 96.5 0.0002 4.3E-09 56.6 -2.7 94 4-109 620-717 (725)
67 PRK00142 putative rhodanese-re 96.4 0.00068 1.5E-08 50.5 -0.3 62 7-70 15-76 (314)
68 TIGR03167 tRNA_sel_U_synt tRNA 96.3 0.011 2.3E-07 44.1 5.6 67 6-74 136-207 (311)
69 PLN02727 NAD kinase 94.4 0.22 4.7E-06 42.2 7.3 80 5-85 266-364 (986)
70 COG3453 Uncharacterized protei 93.5 0.25 5.3E-06 31.8 4.8 68 5-77 13-100 (130)
71 PF13350 Y_phosphatase3: Tyros 92.5 0.17 3.8E-06 33.9 3.4 31 4-34 26-56 (164)
72 PF14606 Lipase_GDSL_3: GDSL-l 92.1 1.8 3.9E-05 29.8 7.9 74 19-105 59-144 (178)
73 KOG1352 Vacuolar H+-ATPase V1 91.2 0.69 1.5E-05 35.9 5.5 66 37-113 249-359 (618)
74 cd00127 DSPc Dual specificity 90.9 1.2 2.5E-05 28.5 5.9 62 19-80 26-98 (139)
75 PF07755 DUF1611: Protein of u 90.3 1.8 3.9E-05 32.3 6.9 87 10-118 76-164 (301)
76 smart00195 DSPc Dual specifici 88.7 3.5 7.7E-05 26.4 6.9 19 61-79 76-94 (138)
77 PRK11784 tRNA 2-selenouridine 83.4 3.4 7.3E-05 31.4 5.2 64 8-72 152-218 (345)
78 PF01451 LMWPc: Low molecular 83.1 2.3 5E-05 27.4 3.8 41 66-110 1-41 (138)
79 PF02302 PTS_IIB: PTS system, 80.0 2.7 5.8E-05 24.9 3.1 30 65-98 1-30 (90)
80 PRK10310 PTS system galactitol 79.8 9.2 0.0002 23.2 5.4 42 65-111 4-45 (94)
81 cd05567 PTS_IIB_mannitol PTS_I 78.5 11 0.00023 22.4 5.3 41 65-110 2-42 (87)
82 COG5350 Predicted protein tyro 77.8 6.1 0.00013 26.7 4.3 31 53-83 83-113 (172)
83 PRK12361 hypothetical protein; 76.6 12 0.00025 30.2 6.5 20 61-80 173-192 (547)
84 PF05706 CDKN3: Cyclin-depende 74.9 8.4 0.00018 26.3 4.5 28 52-79 122-149 (168)
85 COG1155 NtpA Archaeal/vacuolar 74.2 5.4 0.00012 32.1 3.9 20 93-113 317-336 (588)
86 PRK07688 thiamine/molybdopteri 73.3 3.1 6.7E-05 31.5 2.4 36 5-41 276-317 (339)
87 COG3414 SgaB Phosphotransferas 70.8 11 0.00023 23.1 3.9 31 64-98 2-32 (93)
88 COG2453 CDC14 Predicted protei 70.8 12 0.00026 25.5 4.7 20 60-79 102-121 (180)
89 TIGR00853 pts-lac PTS system, 70.0 22 0.00048 21.6 5.7 42 63-110 3-44 (95)
90 COG2518 Pcm Protein-L-isoaspar 68.9 17 0.00036 25.8 5.1 31 83-113 105-136 (209)
91 PF00782 DSPc: Dual specificit 68.2 12 0.00027 23.5 4.1 21 61-81 71-91 (133)
92 KOG4166 Thiamine pyrophosphate 66.2 14 0.00031 29.3 4.7 80 6-85 218-320 (675)
93 PRK09590 celB cellobiose phosp 65.7 14 0.00031 23.0 3.8 39 65-109 3-41 (104)
94 PF09992 DUF2233: Predicted pe 63.9 9.5 0.00021 25.5 3.1 44 62-109 99-142 (170)
95 cd05563 PTS_IIB_ascorbate PTS_ 63.7 19 0.00041 21.0 4.0 29 66-98 2-30 (86)
96 cd05565 PTS_IIB_lactose PTS_II 63.4 33 0.00071 21.2 5.6 40 65-110 2-41 (99)
97 smart00226 LMWPc Low molecular 63.4 12 0.00026 24.1 3.4 37 66-110 1-37 (140)
98 PF03853 YjeF_N: YjeF-related 62.0 40 0.00088 22.6 5.9 35 61-102 23-57 (169)
99 PF02590 SPOUT_MTase: Predicte 61.5 26 0.00057 23.5 4.8 57 52-112 56-112 (155)
100 TIGR01043 ATP_syn_A_arch ATP s 60.9 34 0.00074 28.0 6.0 30 83-117 309-338 (578)
101 cd05564 PTS_IIB_chitobiose_lic 60.5 33 0.0007 20.8 4.8 39 66-110 2-40 (96)
102 PTZ00393 protein tyrosine phos 59.9 33 0.00072 24.8 5.3 21 60-80 167-187 (241)
103 TIGR00197 yjeF_nterm yjeF N-te 59.4 49 0.0011 23.0 6.1 36 61-103 43-78 (205)
104 PLN02645 phosphoglycolate phos 59.2 64 0.0014 23.9 7.0 28 2-29 10-37 (311)
105 cd05566 PTS_IIB_galactitol PTS 58.9 24 0.00051 20.7 3.9 29 65-97 2-30 (89)
106 smart00404 PTPc_motif Protein 58.9 21 0.00047 21.0 3.8 17 62-78 38-54 (105)
107 smart00012 PTPc_DSPc Protein t 58.9 21 0.00047 21.0 3.8 17 62-78 38-54 (105)
108 COG2185 Sbm Methylmalonyl-CoA 58.1 53 0.0011 21.8 6.1 42 61-107 61-102 (143)
109 PRK10565 putative carbohydrate 57.7 56 0.0012 26.2 6.8 37 60-103 57-93 (508)
110 cd02071 MM_CoA_mut_B12_BD meth 57.4 36 0.00077 21.5 4.7 39 63-106 50-88 (122)
111 cd00133 PTS_IIB PTS_IIB: subun 57.0 30 0.00065 19.4 4.1 29 66-98 2-30 (84)
112 TIGR00824 EIIA-man PTS system, 54.8 51 0.0011 20.7 5.3 28 47-74 42-70 (116)
113 PF03610 EIIA-man: PTS system 54.7 50 0.0011 20.5 5.9 27 48-74 42-68 (116)
114 PF01583 APS_kinase: Adenylyls 54.7 41 0.00088 22.6 4.8 36 66-106 4-39 (156)
115 COG4822 CbiK Cobalamin biosynt 53.8 82 0.0018 22.7 6.5 43 62-108 136-179 (265)
116 cd05569 PTS_IIB_fructose PTS_I 53.6 35 0.00076 20.7 4.1 33 66-103 3-35 (96)
117 PLN03050 pyridoxine (pyridoxam 52.1 39 0.00084 24.4 4.7 33 64-103 61-93 (246)
118 PLN03049 pyridoxine (pyridoxam 51.6 85 0.0018 25.0 6.8 32 64-102 60-91 (462)
119 COG4566 TtrR Response regulato 51.3 84 0.0018 22.1 6.0 53 6-74 33-87 (202)
120 cd01134 V_A-ATPase_A V/A-type 50.9 57 0.0012 25.2 5.5 30 83-117 244-273 (369)
121 PF07879 PHB_acc_N: PHB/PHA ac 50.7 26 0.00056 19.9 2.8 30 4-33 16-46 (64)
122 PRK00103 rRNA large subunit me 50.4 75 0.0016 21.3 6.5 58 52-113 56-113 (157)
123 PRK04192 V-type ATP synthase s 49.9 59 0.0013 26.8 5.8 30 83-117 314-343 (586)
124 PF10686 DUF2493: Protein of u 49.4 46 0.001 19.1 3.9 9 99-107 33-41 (71)
125 PRK11070 ssDNA exonuclease Rec 48.9 87 0.0019 25.7 6.6 51 49-104 55-106 (575)
126 PLN02918 pyridoxine (pyridoxam 48.0 1E+02 0.0022 25.2 6.8 33 64-103 136-168 (544)
127 COG2213 MtlA Phosphotransferas 47.8 46 0.001 26.1 4.6 44 64-111 379-422 (472)
128 TIGR00682 lpxK tetraacyldisacc 47.5 55 0.0012 24.5 5.0 49 62-116 26-76 (311)
129 COG1611 Predicted Rossmann fol 45.8 48 0.001 23.3 4.2 43 62-111 13-59 (205)
130 KOG0333 U5 snRNP-like RNA heli 45.5 69 0.0015 26.3 5.4 37 62-108 516-552 (673)
131 COG0529 CysC Adenylylsulfate k 44.7 1.1E+02 0.0023 21.5 6.4 23 79-106 38-60 (197)
132 COG0162 TyrS Tyrosyl-tRNA synt 44.3 50 0.0011 25.8 4.4 47 65-113 32-80 (401)
133 TIGR02689 ars_reduc_gluta arse 44.2 44 0.00095 21.2 3.6 17 65-81 2-18 (126)
134 PRK11391 etp phosphotyrosine-p 43.4 46 0.001 21.8 3.7 38 64-110 3-40 (144)
135 COG1660 Predicted P-loop-conta 43.2 79 0.0017 23.5 5.0 35 65-103 245-279 (286)
136 cd00115 LMWPc Substituted upda 42.7 51 0.0011 21.2 3.8 39 65-110 2-40 (141)
137 COG0001 HemL Glutamate-1-semia 42.3 1.1E+02 0.0023 24.3 5.9 57 50-113 95-151 (432)
138 TIGR03642 cas_csx13 CRISPR-ass 41.7 96 0.0021 20.0 5.2 32 66-103 92-123 (124)
139 COG1576 Uncharacterized conser 41.6 1.1E+02 0.0024 20.7 6.2 56 52-112 56-111 (155)
140 KOG2564 Predicted acetyltransf 41.0 1.6E+02 0.0034 22.3 7.5 87 11-105 95-183 (343)
141 PF14566 PTPlike_phytase: Inos 40.5 33 0.00072 22.6 2.7 27 52-78 113-139 (149)
142 PRK08117 4-aminobutyrate amino 40.0 55 0.0012 25.4 4.2 45 62-113 101-145 (433)
143 COG0062 Uncharacterized conser 39.7 1.3E+02 0.0029 21.1 6.7 30 63-98 49-78 (203)
144 PRK08593 4-aminobutyrate amino 39.5 72 0.0016 25.0 4.8 41 65-112 104-144 (445)
145 TIGR03029 EpsG chain length de 38.8 1.5E+02 0.0032 21.3 7.9 92 7-106 43-141 (274)
146 PF02606 LpxK: Tetraacyldisacc 38.4 84 0.0018 23.7 4.8 44 61-109 32-77 (326)
147 PRK05571 ribose-5-phosphate is 38.1 1.2E+02 0.0025 20.3 5.0 54 12-74 17-70 (148)
148 PRK08105 flavodoxin; Provision 38.0 91 0.002 20.4 4.5 35 64-104 3-37 (149)
149 TIGR01587 cas3_core CRISPR-ass 37.9 1.5E+02 0.0033 22.0 6.2 47 53-108 212-259 (358)
150 PRK09548 PTS system ascorbate- 37.9 55 0.0012 27.0 3.9 33 62-98 505-537 (602)
151 PRK10126 tyrosine phosphatase; 37.2 56 0.0012 21.3 3.4 38 64-110 3-40 (147)
152 TIGR00644 recJ single-stranded 37.2 2.1E+02 0.0045 23.2 7.1 46 48-98 39-84 (539)
153 PTZ00242 protein tyrosine phos 37.1 61 0.0013 21.8 3.6 19 61-79 96-114 (166)
154 PRK15083 PTS system mannitol-s 36.7 84 0.0018 26.1 4.9 38 63-104 378-415 (639)
155 PLN02482 glutamate-1-semialdeh 36.6 1E+02 0.0022 24.6 5.2 41 64-111 155-195 (474)
156 PRK13530 arsenate reductase; P 36.2 78 0.0017 20.4 3.9 36 64-107 4-39 (133)
157 PRK01906 tetraacyldisaccharide 34.9 94 0.002 23.6 4.6 43 62-109 54-98 (338)
158 TIGR00646 MG010 DNA primase-re 34.6 68 0.0015 22.9 3.6 42 67-112 157-199 (218)
159 PF01656 CbiA: CobQ/CobB/MinD/ 34.5 1.2E+02 0.0026 20.0 4.8 36 66-106 1-36 (195)
160 PF11288 DUF3089: Protein of u 34.4 70 0.0015 22.6 3.6 30 44-73 75-104 (207)
161 PRK06148 hypothetical protein; 34.2 1.1E+02 0.0025 26.8 5.5 42 64-112 680-721 (1013)
162 TIGR01848 PHA_reg_PhaR polyhyd 33.9 59 0.0013 20.5 2.8 30 4-33 16-46 (107)
163 PRK06918 4-aminobutyrate amino 33.7 1.1E+02 0.0023 24.0 4.9 41 66-113 117-157 (451)
164 TIGR00640 acid_CoA_mut_C methy 33.7 1.3E+02 0.0029 19.4 5.7 40 62-106 52-91 (132)
165 cd05568 PTS_IIB_bgl_like PTS_I 33.4 37 0.00081 19.4 1.9 22 65-90 2-23 (85)
166 PF09651 Cas_APE2256: CRISPR-a 33.0 1.3E+02 0.0027 19.6 4.5 37 63-105 90-126 (136)
167 PRK04140 hypothetical protein; 32.5 2.2E+02 0.0048 21.5 6.9 64 19-86 69-133 (317)
168 KOG1615 Phosphoserine phosphat 32.4 82 0.0018 22.4 3.6 21 11-31 7-27 (227)
169 PRK02261 methylaspartate mutas 32.3 1.4E+02 0.0031 19.3 6.3 13 17-29 27-39 (137)
170 PRK10499 PTS system N,N'-diace 32.2 1.3E+02 0.0028 18.6 4.2 30 64-98 4-33 (106)
171 KOG3062 RNA polymerase II elon 32.1 1.2E+02 0.0026 22.2 4.5 37 65-105 2-39 (281)
172 PF03668 ATP_bind_2: P-loop AT 31.6 1.7E+02 0.0038 21.7 5.4 31 64-98 243-273 (284)
173 COG1891 Uncharacterized protei 31.0 1.1E+02 0.0024 21.3 4.0 29 4-33 4-32 (235)
174 PRK06917 hypothetical protein; 30.7 1.8E+02 0.0038 22.9 5.6 47 65-112 92-138 (447)
175 COG4635 HemG Flavodoxin [Energ 30.5 1.5E+02 0.0032 20.3 4.5 29 64-97 2-30 (175)
176 KOG1716 Dual specificity phosp 30.5 1.9E+02 0.0041 21.2 5.5 18 61-78 153-170 (285)
177 PRK07046 aminotransferase; Val 30.3 50 0.0011 26.0 2.6 40 65-111 131-170 (453)
178 PF11775 CobT_C: Cobalamin bio 30.2 2.1E+02 0.0045 20.5 6.4 54 67-120 17-80 (219)
179 PF00258 Flavodoxin_1: Flavodo 30.0 1.3E+02 0.0027 19.1 4.1 26 67-97 1-26 (143)
180 COG0394 Wzb Protein-tyrosine-p 29.9 1.5E+02 0.0032 19.4 4.4 38 64-109 3-40 (139)
181 KOG0332 ATP-dependent RNA heli 29.7 83 0.0018 24.7 3.5 33 66-108 333-365 (477)
182 PRK09426 methylmalonyl-CoA mut 29.7 98 0.0021 26.2 4.2 42 61-107 631-672 (714)
183 PRK13265 glycine/sarcosine/bet 29.5 1.4E+02 0.0031 19.8 4.1 38 68-109 42-79 (154)
184 PRK05639 4-aminobutyrate amino 29.5 1.4E+02 0.0029 23.7 4.9 41 65-112 114-154 (457)
185 PRK00615 glutamate-1-semialdeh 29.4 1.4E+02 0.003 23.4 4.9 40 65-111 111-150 (433)
186 TIGR00689 rpiB_lacA_lacB sugar 29.3 1.7E+02 0.0038 19.3 4.7 53 12-74 15-67 (144)
187 PRK13104 secA preprotein trans 29.1 1.9E+02 0.0042 25.2 5.9 40 60-109 441-480 (896)
188 KOG0685 Flavin-containing amin 28.7 1.1E+02 0.0024 24.7 4.1 35 62-106 20-54 (498)
189 PRK05964 adenosylmethionine--8 28.5 2.3E+02 0.005 21.9 6.0 47 65-112 103-149 (423)
190 PRK05769 4-aminobutyrate amino 28.3 73 0.0016 25.0 3.2 41 65-112 116-156 (441)
191 PF04343 DUF488: Protein of un 28.2 73 0.0016 20.0 2.7 23 9-31 1-24 (122)
192 TIGR02691 arsC_pI258_fam arsen 28.1 78 0.0017 20.2 2.8 16 66-81 1-16 (129)
193 PRK08622 galactose-6-phosphate 27.8 2E+02 0.0043 19.7 4.8 53 12-74 17-69 (171)
194 PHA02031 putative DnaG-like pr 27.6 2.6E+02 0.0055 20.7 6.1 39 63-107 207-246 (266)
195 TIGR00700 GABAtrnsam 4-aminobu 27.4 85 0.0018 24.3 3.4 40 65-111 95-134 (420)
196 KOG1718 Dual specificity phosp 27.4 70 0.0015 22.1 2.5 17 62-78 93-109 (198)
197 PTZ00346 histone deacetylase; 27.1 3.2E+02 0.007 21.7 6.4 16 93-108 304-319 (429)
198 COG1692 Calcineurin-like phosp 27.0 1.1E+02 0.0023 22.5 3.6 59 20-79 98-158 (266)
199 COG1663 LpxK Tetraacyldisaccha 26.9 1.8E+02 0.0039 22.2 4.9 40 64-109 47-89 (336)
200 PRK06149 hypothetical protein; 26.5 1.7E+02 0.0037 25.6 5.3 41 64-111 641-681 (972)
201 PRK05298 excinuclease ABC subu 26.4 3.3E+02 0.0072 22.7 6.8 39 60-108 443-481 (652)
202 COG1157 FliI Flagellar biosynt 26.2 2.5E+02 0.0053 22.4 5.6 46 63-113 218-268 (441)
203 TIGR03372 putres_am_tran putre 26.1 2.2E+02 0.0048 22.4 5.5 44 65-112 135-178 (442)
204 TIGR01552 phd_fam prevent-host 26.0 88 0.0019 16.2 2.4 28 44-71 2-29 (52)
205 cd02037 MRP-like MRP (Multiple 25.9 1.9E+02 0.0042 18.9 4.6 9 95-104 27-35 (169)
206 COG4547 CobT Cobalamin biosynt 25.8 1.6E+02 0.0035 23.8 4.5 39 78-121 435-482 (620)
207 PF07015 VirC1: VirC1 protein; 25.7 2.6E+02 0.0056 20.2 5.4 43 65-112 2-49 (231)
208 cd01983 Fer4_NifH The Fer4_Nif 25.7 1.3E+02 0.0029 16.8 4.5 33 67-104 2-34 (99)
209 PRK12613 galactose-6-phosphate 25.6 2.1E+02 0.0045 19.0 4.8 50 12-74 17-66 (141)
210 cd04468 S1_eIF5A S1_eIF5A: Euk 25.4 1.4E+02 0.0031 17.1 4.6 36 20-57 4-44 (69)
211 KOG1403 Predicted alanine-glyo 25.4 2.7E+02 0.0057 21.4 5.4 41 62-109 100-140 (452)
212 PTZ00063 histone deacetylase; 25.1 3.5E+02 0.0077 21.5 6.5 16 93-108 286-301 (436)
213 PRK06058 4-aminobutyrate amino 25.1 2.1E+02 0.0045 22.4 5.2 40 65-111 118-157 (443)
214 PRK12389 glutamate-1-semialdeh 25.0 1.7E+02 0.0036 22.8 4.6 41 65-112 110-150 (428)
215 PRK05965 hypothetical protein; 24.9 2.9E+02 0.0063 21.8 6.0 45 63-111 106-153 (459)
216 PRK09273 hypothetical protein; 24.9 1.8E+02 0.0039 20.7 4.3 58 9-74 18-75 (211)
217 PF15547 DUF4654: Domain of un 24.8 1.3E+02 0.0029 19.6 3.3 25 99-123 63-87 (138)
218 TIGR00642 mmCoA_mut_beta methy 24.8 3.1E+02 0.0066 22.9 6.2 62 35-105 521-582 (619)
219 PRK05688 fliI flagellum-specif 24.7 2.1E+02 0.0045 22.8 5.1 32 81-117 246-277 (451)
220 PRK08149 ATP synthase SpaL; Va 24.6 3.6E+02 0.0078 21.4 6.9 34 80-118 228-261 (428)
221 PRK15088 PTS system mannose-sp 24.6 2.5E+02 0.0055 21.2 5.3 27 48-74 44-71 (322)
222 PRK09004 FMN-binding protein M 24.4 2.1E+02 0.0045 18.6 4.6 34 65-104 4-37 (146)
223 PF03162 Y_phosphatase2: Tyros 24.4 1.9E+02 0.0041 19.4 4.3 16 62-77 90-105 (164)
224 PRK08360 4-aminobutyrate amino 24.2 1.8E+02 0.0039 22.8 4.7 40 65-111 102-141 (443)
225 PF07005 DUF1537: Protein of u 24.1 2.5E+02 0.0054 19.4 5.1 73 21-101 34-123 (223)
226 PF04723 GRDA: Glycine reducta 24.0 2.1E+02 0.0046 19.0 4.2 38 68-109 41-78 (150)
227 COG0647 NagD Predicted sugar p 23.9 1.7E+02 0.0038 21.5 4.3 90 21-122 9-118 (269)
228 PF10743 Phage_Cox: Regulatory 23.7 1.5E+02 0.0032 18.0 3.2 46 9-57 25-70 (87)
229 KOG2853 Possible oxidoreductas 23.6 1.8E+02 0.0038 22.9 4.3 35 64-105 87-121 (509)
230 COG0514 RecQ Superfamily II DN 23.6 1.9E+02 0.0042 23.9 4.8 50 61-120 228-286 (590)
231 PRK06777 4-aminobutyrate amino 23.5 1E+02 0.0022 23.9 3.2 40 66-112 103-142 (421)
232 PF02502 LacAB_rpiB: Ribose/Ga 23.4 2.2E+02 0.0047 18.7 4.3 53 12-74 16-68 (140)
233 cd00047 PTPc Protein tyrosine 23.2 75 0.0016 22.1 2.2 17 62-78 165-181 (231)
234 COG3581 Uncharacterized protei 23.1 2.1E+02 0.0046 22.5 4.7 37 65-104 73-109 (420)
235 TIGR00631 uvrb excinuclease AB 23.1 4.4E+02 0.0095 22.1 6.8 45 54-108 433-477 (655)
236 PRK06062 hypothetical protein; 23.1 1.9E+02 0.0041 22.8 4.6 40 65-111 113-152 (451)
237 COG1737 RpiR Transcriptional r 23.0 3.1E+02 0.0067 20.0 6.7 50 53-110 120-169 (281)
238 TIGR00614 recQ_fam ATP-depende 22.9 3.2E+02 0.0069 21.5 5.9 37 62-108 225-261 (470)
239 PRK09792 4-aminobutyrate trans 22.9 1.1E+02 0.0023 23.8 3.2 39 66-111 103-141 (421)
240 TIGR01120 rpiB ribose 5-phosph 22.8 2.4E+02 0.0051 18.7 4.9 53 12-74 16-68 (143)
241 PF02633 Creatininase: Creatin 22.7 2.8E+02 0.0061 19.5 10.0 52 37-90 72-125 (237)
242 PF04748 Polysacc_deac_2: Dive 22.7 1.4E+02 0.003 21.1 3.5 63 11-73 109-184 (213)
243 TIGR01119 lacB galactose-6-pho 22.6 2.6E+02 0.0057 19.1 4.9 53 12-74 17-69 (171)
244 PF06794 UPF0270: Uncharacteri 22.6 81 0.0018 18.2 1.9 55 5-73 5-59 (70)
245 PF04722 Ssu72: Ssu72-like pro 22.6 1.9E+02 0.004 20.4 3.9 30 65-103 3-32 (195)
246 TIGR02370 pyl_corrinoid methyl 22.4 2.7E+02 0.0058 19.2 4.9 35 63-103 84-118 (197)
247 TIGR00709 dat 2,4-diaminobutyr 22.4 2.1E+02 0.0046 22.3 4.8 41 65-112 103-143 (442)
248 PRK12898 secA preprotein trans 22.3 4.8E+02 0.01 22.0 9.4 86 10-108 422-508 (656)
249 PRK06082 4-aminobutyrate amino 22.2 2.4E+02 0.0053 22.2 5.1 41 65-112 131-171 (459)
250 PF00850 Hist_deacetyl: Histon 22.0 2.5E+02 0.0055 20.8 4.9 27 83-109 270-296 (311)
251 KOG3302 TATA-box binding prote 22.0 1.7E+02 0.0036 20.6 3.6 22 77-98 86-107 (200)
252 PF07796 DUF1638: Protein of u 21.7 1.4E+02 0.0031 19.8 3.3 36 39-74 4-41 (166)
253 TIGR03096 nitroso_cyanin nitro 21.4 39 0.00085 22.2 0.5 10 35-44 124-133 (135)
254 PRK13230 nitrogenase reductase 21.4 2.7E+02 0.0058 20.1 4.9 36 65-106 3-38 (279)
255 PRK07495 4-aminobutyrate amino 21.4 2.4E+02 0.0053 21.9 4.9 39 66-111 103-141 (425)
256 PRK12615 galactose-6-phosphate 21.3 2.8E+02 0.0061 19.0 5.0 53 12-74 17-69 (171)
257 KOG1719 Dual specificity phosp 21.3 1.7E+02 0.0036 20.0 3.4 20 61-80 107-126 (183)
258 cd02040 NifH NifH gene encodes 21.1 2.5E+02 0.0054 19.8 4.7 35 66-106 4-38 (270)
259 COG0003 ArsA Predicted ATPase 21.1 3E+02 0.0064 20.9 5.1 35 64-103 2-36 (322)
260 TIGR00963 secA preprotein tran 21.1 4.1E+02 0.009 22.8 6.3 37 60-106 402-438 (745)
261 TIGR01118 lacA galactose-6-pho 21.0 2.6E+02 0.0057 18.5 4.8 51 12-74 17-67 (141)
262 PRK06931 diaminobutyrate--2-ox 21.0 1.8E+02 0.004 22.9 4.2 42 65-113 122-163 (459)
263 PF12682 Flavodoxin_4: Flavodo 20.9 1.8E+02 0.0038 19.3 3.5 29 53-81 92-121 (156)
264 COG1798 DPH5 Diphthamide biosy 20.9 3.5E+02 0.0076 19.9 5.2 89 7-108 144-241 (260)
265 PRK12906 secA preprotein trans 20.8 3.8E+02 0.0082 23.2 6.1 39 60-108 437-475 (796)
266 cd02069 methionine_synthase_B1 20.8 3.1E+02 0.0067 19.2 5.0 35 63-103 88-122 (213)
267 TIGR00246 tRNA_RlmH_YbeA rRNA 20.3 2.8E+02 0.006 18.5 6.0 56 52-113 55-110 (153)
268 KOG2585 Uncharacterized conser 20.3 2.1E+02 0.0046 22.8 4.2 33 66-104 269-301 (453)
269 COG1440 CelA Phosphotransferas 20.2 2.2E+02 0.0048 17.8 3.5 29 64-97 2-30 (102)
270 PRK07678 aminotransferase; Val 20.2 3.3E+02 0.0071 21.4 5.4 47 65-112 106-152 (451)
271 COG3367 Uncharacterized conser 20.1 3.5E+02 0.0076 20.7 5.2 79 12-112 113-192 (339)
No 1
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.92 E-value=1.5e-24 Score=135.76 Aligned_cols=97 Identities=24% Similarity=0.439 Sum_probs=77.7
Q ss_pred ccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHH--HhcCCCEEEEEcCCCCCCcHHHHHH
Q 032854 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ--EVRGKDTLVFHCALSQVRGPTCAKR 83 (132)
Q Consensus 6 ~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~--~~~~~~~ivv~c~~g~~~~~~~a~~ 83 (132)
..|+++++.+++.+++.+|||+|++.||..||||||+|+|...+......+.. ..+++++||+||.+|. ++..++
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~-rs~~a~-- 78 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGI-RCEKAS-- 78 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCch-hHHHHH--
Confidence 46899999999887789999999999999999999999998876543222211 1267889999999886 555554
Q ss_pred HHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 84 LANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 84 l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
..|.. .||++|++|+||+.+|.
T Consensus 79 --~~L~~----~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 79 --AYLKE----RGFKNVYQLKGGILKYL 100 (101)
T ss_pred --HHHHH----hCCcceeeechhHHHHh
Confidence 34544 89999999999999996
No 2
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.91 E-value=1.6e-24 Score=137.15 Aligned_cols=104 Identities=18% Similarity=0.346 Sum_probs=86.8
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHH
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR 83 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~ 83 (132)
..+.++++++.+++..++.+|||+|++.+|..+|||||+|+|...+..++.. ++.+++|++||.+|. ++..++
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~~~----~~~~~~ivv~c~~g~-~s~~a~-- 75 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRQ----ADFDTPVMVMCYHGN-SSQGAA-- 75 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHHHh----cCCCCCEEEEeCCCC-CHHHHH--
Confidence 4678999999999876678899999999999999999999998776655544 367899999999886 555544
Q ss_pred HHHHHHHHhhhcCCccEEEeccchhhhhhcCCCcccc
Q 032854 84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120 (132)
Q Consensus 84 l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~ 120 (132)
..|+. .||++|++|.||+.+|...++|++..
T Consensus 76 --~~L~~----~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 76 --QYLLQ----QGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred --HHHHH----CCchheEEecCCHHHHHhcCCCccCC
Confidence 34544 99999999999999999999998754
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.91 E-value=1.5e-24 Score=137.55 Aligned_cols=100 Identities=24% Similarity=0.395 Sum_probs=80.4
Q ss_pred CcccccHHHHHhhhCCC-CeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHH
Q 032854 4 SISYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAK 82 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~-~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~ 82 (132)
.++.++++++.+++..+ +.+|||+|++.+|..||||||+|+|...+...+..+.. +++++||+||.+|. ++..++
T Consensus 8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~~--~~~~~ivv~C~~G~-rs~~a~- 83 (109)
T cd01533 8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELAP--DPRTPIVVNCAGRT-RSIIGA- 83 (109)
T ss_pred cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcCC--CCCCeEEEECCCCc-hHHHHH-
Confidence 46789999999988754 57899999999999999999999998777665555421 35689999999886 554444
Q ss_pred HHHHHHHHHhhhcCCcc-EEEeccchhhhhhcC
Q 032854 83 RLANYLDEVKEDTGINS-IFVLERGFKGWEASG 114 (132)
Q Consensus 83 ~l~~~L~~~~~~~G~~~-v~~l~gG~~~w~~~g 114 (132)
..|+. .||++ ++.|+||+.+|..+|
T Consensus 84 ---~~L~~----~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 84 ---QSLIN----AGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred ---HHHHH----CCCCcceeEecCCHHHHHhcC
Confidence 44444 99987 999999999998765
No 4
>PLN02160 thiosulfate sulfurtransferase
Probab=99.91 E-value=3.8e-24 Score=140.68 Aligned_cols=112 Identities=16% Similarity=0.257 Sum_probs=88.0
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCc--cccCccc------hh--HHHHHHHHHhcCCCEEEEEcCCC
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGS--LHYPSDS------FT--DKIFDLIQEVRGKDTLVFHCALS 73 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~ga--i~ip~~~------~~--~~~~~~~~~~~~~~~ivv~c~~g 73 (132)
.+..++++++.+++.++ .+|||+|++.||..|||||| +|+|... +. ..+..+...++++++||+||.+|
T Consensus 13 ~~~~i~~~e~~~~~~~~-~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG 91 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSG-HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSG 91 (136)
T ss_pred eeeEeCHHHHHHHHhCC-CEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCc
Confidence 47889999999988754 68999999999999999999 8999632 21 11222222246788999999998
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCccccCCCcc
Q 032854 74 QVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPC 125 (132)
Q Consensus 74 ~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~ 125 (132)
. ++..++ ..|.+ .||++|+.|.||+.+|..+|+|+.+....|.
T Consensus 92 ~-RS~~Aa----~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~ 134 (136)
T PLN02160 92 A-RSLKAT----TELVA----AGYKKVRNKGGGYLAWVDHSFPINQEEEEPS 134 (136)
T ss_pred H-HHHHHH----HHHHH----cCCCCeeecCCcHHHHhhCCCCccccccCCC
Confidence 6 666555 33433 8999999999999999999999999887765
No 5
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.90 E-value=4.1e-24 Score=133.21 Aligned_cols=98 Identities=24% Similarity=0.471 Sum_probs=80.2
Q ss_pred ccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHH
Q 032854 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA 85 (132)
Q Consensus 6 ~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~ 85 (132)
..|+++++.++++.+ .+|||+|++.+|..+|||||+|+|...+..... .++++++||+||.+|. ++..++
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~~----~~~~~~~iv~~c~~g~-~s~~~~---- 71 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEGL----PLVGANAIIFHCRSGM-RTQQNA---- 71 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccccc----CCCCCCcEEEEeCCCc-hHHHHH----
Confidence 578999999988865 789999999999999999999999887654322 2467889999999886 444444
Q ss_pred HHHHHHhhhcCCccEEEeccchhhhhhcCCCc
Q 032854 86 NYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (132)
Q Consensus 86 ~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (132)
..|.+ .|+.++++|.||+.+|...++|+
T Consensus 72 ~~L~~----~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 72 ERLAA----ISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHH----cCCccEEEeeCCHHHHHHCcCCC
Confidence 44544 89999999999999999998874
No 6
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.90 E-value=4.6e-23 Score=131.48 Aligned_cols=108 Identities=49% Similarity=0.841 Sum_probs=85.1
Q ss_pred cccccHHHHHhhhCC--CCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHh--cCCCEEEEEcCCCCCCcHHH
Q 032854 5 ISYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQVRGPTC 80 (132)
Q Consensus 5 ~~~is~~~~~~~~~~--~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~--~~~~~ivv~c~~g~~~~~~~ 80 (132)
++.|+++++.+++.. ++.+|||+|+. +|..+|||||+|+|...+...+..+.+.. .++++||+||..++.++..+
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r~~~a 79 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVRGPSA 79 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcchHHH
Confidence 467999999998875 45789999999 99999999999999988877666665544 56789999998554588888
Q ss_pred HHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 81 AKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 81 a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
+..+...|...-.+.|+.+|++|.||+.+|...
T Consensus 80 a~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 80 ARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred HHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 876655443200014999999999999999864
No 7
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.90 E-value=1.8e-23 Score=130.55 Aligned_cols=94 Identities=19% Similarity=0.287 Sum_probs=76.1
Q ss_pred ccHHHHHhhhCC-CCeEEEeeCCCCCcCCCccCCccccCccchhHHH----HHHHHHhcCCCEEEEEcCCCCCCcHHHHH
Q 032854 8 ISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI----FDLIQEVRGKDTLVFHCALSQVRGPTCAK 82 (132)
Q Consensus 8 is~~~~~~~~~~-~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~----~~~~~~~~~~~~ivv~c~~g~~~~~~~a~ 82 (132)
|+++++.+++.. ++.+|||+|++.||..||||||+|+|...+...+ ......++++++||+||.+|. ++..++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~-rs~~aa- 78 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEG-SSQFVA- 78 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCC-cHHHHH-
Confidence 688999998875 4689999999999999999999999998775443 334445578899999999886 555555
Q ss_pred HHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 83 RLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 83 ~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
..|.+ .||+ ++.|.||+.+|.
T Consensus 79 ---~~L~~----~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 79 ---ELLAE----RGYD-VDYLAGGMKAWS 99 (100)
T ss_pred ---HHHHH----cCce-eEEeCCcHHhhc
Confidence 44544 9997 999999999995
No 8
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.89 E-value=1.6e-22 Score=128.98 Aligned_cols=101 Identities=33% Similarity=0.600 Sum_probs=80.8
Q ss_pred ccccHHHHHhhhCCC------CeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHh--cCCCEEEEEcCCCCCCc
Q 032854 6 SYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQVRG 77 (132)
Q Consensus 6 ~~is~~~~~~~~~~~------~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~--~~~~~ivv~c~~g~~~~ 77 (132)
+.||++++.+++.++ +.+|||+|+. ||..||||||+|+|...+..++..+...+ ...++||+||.+++.++
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~rs 80 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGRG 80 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCccc
Confidence 579999999999864 5889999999 99999999999999988877666555432 34578999999754577
Q ss_pred HHHHHHHHHHHHHHhhhcCC--ccEEEeccchhhhh
Q 032854 78 PTCAKRLANYLDEVKEDTGI--NSIFVLERGFKGWE 111 (132)
Q Consensus 78 ~~~a~~l~~~L~~~~~~~G~--~~v~~l~gG~~~w~ 111 (132)
..++.++...|++ .|+ .++++|+||+.+|.
T Consensus 81 ~~a~~~l~~~l~~----~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 81 PRAARWFADYLRK----VGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHHHHHHHHHHhc----cCCCCCeEEEECChhhhhc
Confidence 7777666655533 775 68999999999995
No 9
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.89 E-value=2.2e-23 Score=131.94 Aligned_cols=101 Identities=30% Similarity=0.566 Sum_probs=75.4
Q ss_pred cHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccch--------hHH----HHHHHHHhcCCCEEEEEcCCCCCC
Q 032854 9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF--------TDK----IFDLIQEVRGKDTLVFHCALSQVR 76 (132)
Q Consensus 9 s~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~--------~~~----~~~~~~~~~~~~~ivv~c~~g~~~ 76 (132)
||+|+.+++.+++.+|||+|++.+|..||||||+|+|...+ ... ........+.+++||+||.+|...
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 68999999977789999999999999999999999998443 122 223333346788999999877633
Q ss_pred cHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 77 ~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
...++..+...|.. +|+++|++|+||+.+|.++
T Consensus 81 ~~~~~~~~~~~l~~----~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 81 GSAAAARVAWILKK----LGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HHHHHHHHHHHHHH----TTTSSEEEETTHHHHHHHH
T ss_pred chhHHHHHHHHHHH----cCCCCEEEecChHHHHhcC
Confidence 33333333333544 8999999999999999864
No 10
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.89 E-value=1.5e-22 Score=136.68 Aligned_cols=106 Identities=22% Similarity=0.310 Sum_probs=79.1
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCC----CcCC---------CccCCccccCcc---chhH----HHHHHHHH---h
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDE----RSYD---------GHITGSLHYPSD---SFTD----KIFDLIQE---V 60 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~----e~~~---------~hI~gai~ip~~---~~~~----~~~~~~~~---~ 60 (132)
....||++|+.+++.+++.+|||+|+.. +|.. +|||||+|+|.. .+.. .+...+.. .
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~~~~ 113 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERATGG 113 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence 4678999999999987778999999875 4543 499999999842 2221 12222222 1
Q ss_pred cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCc
Q 032854 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (132)
.++++||+||.+|.+++..++ ..|.. +||++|++|+||+.+|..+|+|+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa----~~L~~----~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAA----KRALA----YGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHH----HHHHh----cCCcceEEecCCHHHHHHcCCCC
Confidence 578999999998764555444 44433 99999999999999999999985
No 11
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.89 E-value=4.2e-23 Score=127.84 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=72.4
Q ss_pred ccHHHHHhhhCCC--CeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHH
Q 032854 8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA 85 (132)
Q Consensus 8 is~~~~~~~~~~~--~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~ 85 (132)
||++++.+++..+ +.+|||+|++.+|..||||||+|+|...+......+.. .++++||+||.+|. ++..++
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~--~~~~~iv~~c~~G~-rs~~aa---- 73 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP--VRGARIVLADDDGV-RADMTA---- 73 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc--cCCCeEEEECCCCC-hHHHHH----
Confidence 6889999988753 57899999999999999999999998766554444321 24679999999886 554444
Q ss_pred HHHHHHhhhcCCccEEEeccchhhhh
Q 032854 86 NYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 86 ~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
..|.. +||+ |++|+||+.+|.
T Consensus 74 ~~L~~----~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 74 SWLAQ----MGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHHHH----cCCE-EEEecCcHHHhc
Confidence 34444 9998 999999999995
No 12
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.89 E-value=5.9e-23 Score=132.66 Aligned_cols=105 Identities=15% Similarity=0.235 Sum_probs=82.9
Q ss_pred CcccccHHHHHhhhCC-CCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHH------HhcCCCEEEEEcCCCCCC
Q 032854 4 SISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQ------EVRGKDTLVFHCALSQVR 76 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~-~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~------~~~~~~~ivv~c~~g~~~ 76 (132)
....|+++++.++++. .+.+|||+|++.+|..+|||||+|+|...+..+...+.. ..+++++||+||++|. +
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~-r 84 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGN-D 84 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCC-c
Confidence 4678999999998875 578899999999999999999999998877654433211 1257899999999886 6
Q ss_pred cHHHHHHHHHHHHHHhhhcCC-ccEEEeccchhhhhhcCCCc
Q 032854 77 GPTCAKRLANYLDEVKEDTGI-NSIFVLERGFKGWEASGKPV 117 (132)
Q Consensus 77 ~~~~a~~l~~~L~~~~~~~G~-~~v~~l~gG~~~w~~~g~p~ 117 (132)
+..++ ..|+. .|| +++++|+||+.+|..+..+.
T Consensus 85 s~~aa----~~L~~----~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 85 SQTAV----RKLKE----LGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred HHHHH----HHHHH----cCCccceeeecchHHHHHHHhCcc
Confidence 65555 34544 999 79999999999998875443
No 13
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.88 E-value=7.5e-23 Score=128.00 Aligned_cols=97 Identities=23% Similarity=0.371 Sum_probs=76.9
Q ss_pred cccHHHHHhhhCCC--CeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHH
Q 032854 7 YISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL 84 (132)
Q Consensus 7 ~is~~~~~~~~~~~--~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l 84 (132)
.|+++++.+++..+ +.+|||+|++.+|..+|||||+|+|...+...+..+.. .+++++||+||++|. ++..++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~-~~~~~~vv~~c~~g~-rs~~~~--- 75 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDS-DNPDKDIVVLCHHGG-RSMQVA--- 75 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhcc-cCCCCeEEEEeCCCc-hHHHHH---
Confidence 47899999988854 57899999999999999999999998777665544421 135889999999875 554444
Q ss_pred HHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 85 ANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 85 ~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
..|.+ .|++++++|+||+.+|...
T Consensus 76 -~~l~~----~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 76 -QWLLR----QGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred -HHHHH----cCCccEEEecCCHHHHhhh
Confidence 34433 8999999999999999653
No 14
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.88 E-value=2.2e-22 Score=127.78 Aligned_cols=102 Identities=18% Similarity=0.304 Sum_probs=79.7
Q ss_pred CcccccHHHHHhhhCC--CCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC-CCcHHH
Q 032854 4 SISYISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ-VRGPTC 80 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~--~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~~~~~~ 80 (132)
.-..++++++.+++.. ++.+|||+|++.+|..||||||+|+|...+... ....++++++||+||++|. .++..+
T Consensus 6 ~~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~---~~~~i~~~~~vvvyc~~g~~~~s~~~ 82 (110)
T cd01521 6 LAFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN---ATAKLDKEKLFVVYCDGPGCNGATKA 82 (110)
T ss_pred eeeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH---hhhcCCCCCeEEEEECCCCCchHHHH
Confidence 3457999999998874 358999999999999999999999998776532 2233478899999998763 133333
Q ss_pred HHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCc
Q 032854 81 AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (132)
Q Consensus 81 a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (132)
+ ..|++ +|+ ++++|+||+.+|..+|+|+
T Consensus 83 a----~~l~~----~G~-~v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 83 A----LKLAE----LGF-PVKEMIGGLDWWKREGYAT 110 (110)
T ss_pred H----HHHHH----cCC-eEEEecCCHHHHHHCCCCC
Confidence 3 44544 899 5999999999999999875
No 15
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.87 E-value=4.9e-22 Score=129.38 Aligned_cols=95 Identities=25% Similarity=0.527 Sum_probs=71.9
Q ss_pred ccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHH--------------------------HHHHH----
Q 032854 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--------------------------IFDLI---- 57 (132)
Q Consensus 8 is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~--------------------------~~~~~---- 57 (132)
||++|+.+++. ++.+|||+|++.||..||||||+|+|...+... +..+.
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAW 79 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 68999999887 568999999999999999999999998643211 11121
Q ss_pred -HHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 58 -QEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 58 -~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
..++++++||+||+.++.++..++ ..|+. +|| +|++|+||+.+|..
T Consensus 80 ~~~i~~~~~vvvyC~~~G~rs~~a~----~~L~~----~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 80 EARLERDPKLLIYCARGGMRSQSLA----WLLES----LGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HhccCCCCeEEEEeCCCCccHHHHH----HHHHH----cCC-ceeEeCCcHHHHHh
Confidence 135788999999975444665554 34433 899 69999999999964
No 16
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.87 E-value=3e-22 Score=122.81 Aligned_cols=89 Identities=25% Similarity=0.511 Sum_probs=72.1
Q ss_pred ccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHH
Q 032854 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANY 87 (132)
Q Consensus 8 is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~ 87 (132)
++++++.+++. ++.+|||+|+..+|..||||||+|+|...+...+.. ++++++||+||.+|. ++..++ ..
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~~~~----~~~~~~vvl~c~~g~-~a~~~a----~~ 70 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDRLNE----LPKDKEIIVYCAVGL-RGYIAA----RI 70 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHHHHh----cCCCCcEEEEcCCCh-hHHHHH----HH
Confidence 57899999884 467899999999999999999999998776654443 467889999999774 444444 44
Q ss_pred HHHHhhhcCCccEEEeccchhhhh
Q 032854 88 LDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 88 L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
|++ .|+ ++++|+||+.+|.
T Consensus 71 L~~----~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 71 LTQ----NGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHH----CCC-CEEEecCCHHHhc
Confidence 544 999 9999999999995
No 17
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.87 E-value=3e-22 Score=123.82 Aligned_cols=92 Identities=28% Similarity=0.435 Sum_probs=75.5
Q ss_pred cccHHHHHhhhCC-CCeEEEeeCCCCCcCC--CccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHH
Q 032854 7 YISGSQLLSLKRR-PNIAVIDVRDDERSYD--GHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR 83 (132)
Q Consensus 7 ~is~~~~~~~~~~-~~~~liD~R~~~e~~~--~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~ 83 (132)
+|+++++.+++.. .+.+|||+|++.+|.. ||||||+|+|...+.+.+.. ++++++||+||..|. ++..++
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~----~~~~~~ivv~c~~g~-~s~~a~-- 73 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGD----LDRDRPVVVYCYHGN-SSAQLA-- 73 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhh----cCCCCCEEEEeCCCC-hHHHHH--
Confidence 4789999998875 4689999999999999 99999999998877655443 478899999999765 554444
Q ss_pred HHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 84 LANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 84 l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
..|+. .||++|++|+||+.+|.
T Consensus 74 --~~l~~----~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 74 --QALRE----AGFTDVRSLAGGFEAWR 95 (96)
T ss_pred --HHHHH----cCCceEEEcCCCHHHhc
Confidence 44544 89999999999999995
No 18
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.87 E-value=2.7e-22 Score=125.46 Aligned_cols=98 Identities=26% Similarity=0.458 Sum_probs=75.0
Q ss_pred ccHHHHHhhhCCCCeEEEeeCCCCCc-CCCccCCccccCccchhHHHHHH----HHHhcCCCEEEEEcCCCCCCcHHHHH
Q 032854 8 ISGSQLLSLKRRPNIAVIDVRDDERS-YDGHITGSLHYPSDSFTDKIFDL----IQEVRGKDTLVFHCALSQVRGPTCAK 82 (132)
Q Consensus 8 is~~~~~~~~~~~~~~liD~R~~~e~-~~~hI~gai~ip~~~~~~~~~~~----~~~~~~~~~ivv~c~~g~~~~~~~a~ 82 (132)
||++++.+++++++.+|||+|++.+| ..||||||+|+|...+..+.... ...++++++||+||.+|. ++..++
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~~~~- 78 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGW-RSALAG- 78 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCC-cHHHHH-
Confidence 68899999888667899999999898 57999999999976654332210 012467899999998875 554444
Q ss_pred HHHHHHHHHhhhcCCccEEEeccchhhhhhcC
Q 032854 83 RLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (132)
Q Consensus 83 ~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g 114 (132)
..|+. .|+++|++|+||+.+|..+|
T Consensus 79 ---~~l~~----~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 79 ---KTLQD----MGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred ---HHHHH----cChHHhEeecCcHHHHhhcC
Confidence 44544 89999999999999997654
No 19
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.87 E-value=1.4e-21 Score=125.95 Aligned_cols=100 Identities=23% Similarity=0.356 Sum_probs=77.1
Q ss_pred cccHHHHHhhhCCCCeEEEeeCCC-------CCcCCCccCCccccCccchhH-------------HHHHHHHH--hcCCC
Q 032854 7 YISGSQLLSLKRRPNIAVIDVRDD-------ERSYDGHITGSLHYPSDSFTD-------------KIFDLIQE--VRGKD 64 (132)
Q Consensus 7 ~is~~~~~~~~~~~~~~liD~R~~-------~e~~~~hI~gai~ip~~~~~~-------------~~~~~~~~--~~~~~ 64 (132)
.|+++++.+++.+++.+|||+|++ .+|..+|||||+|+|...+.. .+.+.... .++++
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDD 80 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence 378999999998767899999999 899999999999999766532 23333332 35789
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcC
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g 114 (132)
+||+||++|..++..++ ..|+. +|+++|++|+||+.+|..+|
T Consensus 81 ~vv~~c~~g~~~a~~~~----~~l~~----~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 81 TVVVYDDGGGFFAARAW----WTLRY----FGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEEECCCCCccHHHHH----HHHHH----cCCCCEEEecCCHHHHHhCc
Confidence 99999998533544443 34433 99999999999999998764
No 20
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.87 E-value=5e-22 Score=131.90 Aligned_cols=98 Identities=24% Similarity=0.329 Sum_probs=76.3
Q ss_pred HHhhhC-CCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHH
Q 032854 13 LLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEV 91 (132)
Q Consensus 13 ~~~~~~-~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~ 91 (132)
+.+++. +.+++|||+|+..+|..+|||||+|+|...+...+..+ +.+.+|||||.+|. .+..+ +..|+.
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l~~l----~~~~~vVv~c~~g~-~a~~a----a~~L~~- 71 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQALEKL----PAAERYVLTCGSSL-LARFA----AADLAA- 71 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHHHhc----CCCCCEEEEeCCCh-HHHHH----HHHHHH-
Confidence 344444 33589999999999999999999999976665555443 67789999998763 33333 345544
Q ss_pred hhhcCCccEEEeccchhhhhhcCCCccccCCC
Q 032854 92 KEDTGINSIFVLERGFKGWEASGKPVCRCTDV 123 (132)
Q Consensus 92 ~~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~ 123 (132)
.|+++|++|+||+.+|..+|+|++++...
T Consensus 72 ---~G~~~v~~L~GG~~aW~~~g~pl~~~~~~ 100 (145)
T cd01535 72 ---LTVKPVFVLEGGTAAWIAAGLPVESGETR 100 (145)
T ss_pred ---cCCcCeEEecCcHHHHHHCCCCcccCCCC
Confidence 89999999999999999999999977443
No 21
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.87 E-value=6.7e-22 Score=127.64 Aligned_cols=105 Identities=28% Similarity=0.428 Sum_probs=77.2
Q ss_pred ccccHHHHHhhhCC------CCeEEEeeCCCCCcCCCccCCccccCcc-chhHHHHHHH--HHhcCCCEEEEEcC-CCCC
Q 032854 6 SYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSD-SFTDKIFDLI--QEVRGKDTLVFHCA-LSQV 75 (132)
Q Consensus 6 ~~is~~~~~~~~~~------~~~~liD~R~~~e~~~~hI~gai~ip~~-~~~~~~~~~~--~~~~~~~~ivv~c~-~g~~ 75 (132)
..||++++.+++.+ ++++|||+|++.+|..||||||+|+|.. .+...+.... ...+++++||+||. +|.
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~- 80 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSK- 80 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCccc-
Confidence 46999999999875 3689999999999999999999999986 4554332211 01367899999997 665
Q ss_pred CcHHHHHHHHHHHHHH----hhhcCCccEEEeccchhhhh
Q 032854 76 RGPTCAKRLANYLDEV----KEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 76 ~~~~~a~~l~~~L~~~----~~~~G~~~v~~l~gG~~~w~ 111 (132)
++..++..|....+.. ....||++|++|+||+.+|.
T Consensus 81 rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 81 RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 7777775555421110 00148999999999999984
No 22
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.86 E-value=9.7e-22 Score=123.66 Aligned_cols=94 Identities=23% Similarity=0.373 Sum_probs=72.8
Q ss_pred cHHHHHhhhC-CCCeEEEeeCCCCCcCCCccCCccccCccchhH-------HHHHHHHH--hcCCCEEEEEcCCCCCCcH
Q 032854 9 SGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-------KIFDLIQE--VRGKDTLVFHCALSQVRGP 78 (132)
Q Consensus 9 s~~~~~~~~~-~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~-------~~~~~~~~--~~~~~~ivv~c~~g~~~~~ 78 (132)
|++++.++++ .++.+|||+|++.+|..||||||+|+|...+.+ .+...+.. .+++++||+||.+|. ++.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGV-RSK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcH-HHH
Confidence 6788999887 667999999999999999999999999877543 22232221 246789999999875 444
Q ss_pred HHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 79 TCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 79 ~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.++ ..|.. +||++|++|+||+.+|.
T Consensus 81 ~~~----~~l~~----~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 81 AAA----ELARS----LGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHH----HHHHH----cCCccceecCCcHHHHc
Confidence 333 44544 99999999999999995
No 23
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.86 E-value=6.8e-22 Score=124.23 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=70.8
Q ss_pred ccHHHHHhhhCCC--CeEEEeeCCCCCcCCCccCCccccCccchhH---HH------HHHHHHhcCCCEEEEEcCCCCCC
Q 032854 8 ISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD---KI------FDLIQEVRGKDTLVFHCALSQVR 76 (132)
Q Consensus 8 is~~~~~~~~~~~--~~~liD~R~~~e~~~~hI~gai~ip~~~~~~---~~------~~~~~~~~~~~~ivv~c~~g~~~ 76 (132)
||++|+.+++..+ +++|||+|++.+|..||||||+|+|...+.. .+ ..+.. ..+++||+||.+|. +
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~-~ 77 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHK-H 77 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCc-c
Confidence 6899999998753 6899999999999999999999999865421 11 11111 13789999999876 4
Q ss_pred cHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 77 ~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
+..++ ..|.. .|+++|++|+||+.+|+
T Consensus 78 s~~~a----~~L~~----~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 78 AALFA----AFLVK----CGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHH----HHHHH----cCCCCEEEEeCcHHHhc
Confidence 44343 34544 99999999999999995
No 24
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1e-21 Score=125.19 Aligned_cols=106 Identities=23% Similarity=0.389 Sum_probs=82.7
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhH-------HHHHHHHHh--cCCCEEEEEcCCCC
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-------KIFDLIQEV--RGKDTLVFHCALSQ 74 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~-------~~~~~~~~~--~~~~~ivv~c~~g~ 74 (132)
.+..++.++++++++.++.++||||.++||..||+|.+||||...... .+.+-.... +.++.||++|.+|.
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~ 100 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASGV 100 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccCc
Confidence 466789999999999877999999999999999999999999754321 222222111 24569999999997
Q ss_pred CCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCcc
Q 032854 75 VRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC 118 (132)
Q Consensus 75 ~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~ 118 (132)
|+..|.. .|. ..||++|..+.|||.+|...++|..
T Consensus 101 -Rs~~A~~----~l~----s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 101 -RSLKATK----ILV----SAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred -chhHHHH----HHH----HcCcccccccCccHHHHHHccCCCC
Confidence 6766653 333 3999999999999999999888753
No 25
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.85 E-value=1.7e-21 Score=125.01 Aligned_cols=97 Identities=18% Similarity=0.359 Sum_probs=76.1
Q ss_pred ccHHHHHhhhCC-CCeEEEeeCCCCCcC-CCccCCccccCccchhH------HHHHHHHHhcCCCEEEEEcCCCCCCcHH
Q 032854 8 ISGSQLLSLKRR-PNIAVIDVRDDERSY-DGHITGSLHYPSDSFTD------KIFDLIQEVRGKDTLVFHCALSQVRGPT 79 (132)
Q Consensus 8 is~~~~~~~~~~-~~~~liD~R~~~e~~-~~hI~gai~ip~~~~~~------~~~~~~~~~~~~~~ivv~c~~g~~~~~~ 79 (132)
||++++.++++. ++.+|||+|++.+|. .||||||+|+|...+.. ....+....+++++||+||.+|. ++..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~-rs~~ 79 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGN-RSIA 79 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCc-cHHH
Confidence 689999999886 578999999999999 99999999999875432 22333222367899999999875 6655
Q ss_pred HHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 80 ~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
++ ..|.+ +||++++.+.||+.+|...
T Consensus 80 aa----~~L~~----~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 80 AA----EAAAQ----AGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HH----HHHHH----CCCCeEEECcCceecCCCC
Confidence 55 34444 9999999999999999654
No 26
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.85 E-value=6.7e-21 Score=138.81 Aligned_cols=111 Identities=20% Similarity=0.319 Sum_probs=85.5
Q ss_pred ccccHHHHHhhhCCCCeEEEeeCC----------CCCcCCCccCCccccCccchh-------------HHHHHHHHH--h
Q 032854 6 SYISGSQLLSLKRRPNIAVIDVRD----------DERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--V 60 (132)
Q Consensus 6 ~~is~~~~~~~~~~~~~~liD~R~----------~~e~~~~hI~gai~ip~~~~~-------------~~~~~~~~~--~ 60 (132)
..++++++.+++++++++|||+|+ +.+|..||||||+|+|...+. +.+.+++.. +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 469999999999988899999997 567889999999999854321 244455544 3
Q ss_pred cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCccccCCCc
Q 032854 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVP 124 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~ 124 (132)
+++++||+||.++...+. +++..|+. +|+++|++|+||+.+|..+|+|++++...+
T Consensus 85 ~~d~~VVvyc~~~~~~a~----~~~~~l~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~ 140 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAP----RAWWMLRT----FGVEKVSILAGGLAGWQRDDLLLEEGAVEL 140 (281)
T ss_pred CCCCEEEEECCCCCchHH----HHHHHHHH----hcCCcEEEcCCCHHHHHHcCCCccCCCCCC
Confidence 678999999986642222 22344444 899999999999999999999999886544
No 27
>PRK01415 hypothetical protein; Validated
Probab=99.84 E-value=8e-21 Score=135.23 Aligned_cols=102 Identities=17% Similarity=0.247 Sum_probs=81.8
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHH--HHHhcCCCEEEEEcCCCCCCcHHHH
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL--IQEVRGKDTLVFHCALSQVRGPTCA 81 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~--~~~~~~~~~ivv~c~~g~~~~~~~a 81 (132)
....|+++++.+++++++.+|||+|.+.||..||||||+|+|...+.+.-.+. .....++++|++||.+|. ++..++
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-Rs~kAa 188 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGI-RCEKST 188 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCCh-HHHHHH
Confidence 35679999999999887899999999999999999999999987765421111 122467899999998775 666665
Q ss_pred HHHHHHHHHHhhhcCCccEEEeccchhhhhhcC
Q 032854 82 KRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (132)
Q Consensus 82 ~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g 114 (132)
..|.+ .||++|+.|.||+.+|.++.
T Consensus 189 ----~~L~~----~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 189 ----SLLKS----IGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred ----HHHHH----cCCCcEEEechHHHHHHHhc
Confidence 45544 89999999999999998764
No 28
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.84 E-value=8e-21 Score=121.66 Aligned_cols=95 Identities=17% Similarity=0.371 Sum_probs=73.2
Q ss_pred ccHHHHHhhhCCCCeEEEeeCCCCCcCC-----------CccCCccccCccchh---------HHHHHHHHH--hcCCCE
Q 032854 8 ISGSQLLSLKRRPNIAVIDVRDDERSYD-----------GHITGSLHYPSDSFT---------DKIFDLIQE--VRGKDT 65 (132)
Q Consensus 8 is~~~~~~~~~~~~~~liD~R~~~e~~~-----------~hI~gai~ip~~~~~---------~~~~~~~~~--~~~~~~ 65 (132)
+|++++.+++++++.+|||+|+..+|.. ||||||+|+|...+. ..+...... ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 5789999988766789999999999876 999999999987543 233344433 247889
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
||+||+.|. ++..++ ..|+. +|++++++|+||+.+|.
T Consensus 81 iv~yc~~g~-~s~~~~----~~l~~----~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 81 VIVYCGSGV-TACVLL----LALEL----LGYKNVRLYDGSWSEWG 117 (118)
T ss_pred EEEECCcHH-HHHHHH----HHHHH----cCCCCeeeeCChHHHhc
Confidence 999998764 444333 44544 99999999999999995
No 29
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.84 E-value=6.8e-21 Score=143.73 Aligned_cols=108 Identities=25% Similarity=0.388 Sum_probs=87.5
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHH
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR 83 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~ 83 (132)
+++.|+++++.+++.+ +.+|||+|++.+|..||||||+|+|...+...+.... .+++++||+||++|. ++..++
T Consensus 1 ~v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~--~~~~~~IvvyC~~G~-rs~~aa-- 74 (376)
T PRK08762 1 SIREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELRIETHL--PDRDREIVLICASGT-RSAHAA-- 74 (376)
T ss_pred CCceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhhc--CCCCCeEEEEcCCCc-HHHHHH--
Confidence 3578999999999875 4889999999999999999999999877665544331 157899999999875 555444
Q ss_pred HHHHHHHHhhhcCCccEEEeccchhhhhhcCCCccccCCC
Q 032854 84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDV 123 (132)
Q Consensus 84 l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~ 123 (132)
..|+. .||++|++|+||+.+|..+++|++.+...
T Consensus 75 --~~L~~----~G~~~v~~l~GG~~~W~~~g~p~~~~~~~ 108 (376)
T PRK08762 75 --ATLRE----LGYTRVASVAGGFSAWKDAGLPLERPRLL 108 (376)
T ss_pred --HHHHH----cCCCceEeecCcHHHHHhcCCccccccCC
Confidence 44544 99999999999999999999999877554
No 30
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.83 E-value=5.1e-21 Score=118.62 Aligned_cols=84 Identities=23% Similarity=0.382 Sum_probs=63.5
Q ss_pred CCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHH--HHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcC
Q 032854 19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDL--IQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTG 96 (132)
Q Consensus 19 ~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~--~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G 96 (132)
+++.+|||+|++.+|..+|||||+|+|...+......+ ....+++++||+||.+|. ++..++ ..|+. .|
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~~~~----~~l~~----~G 80 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSL-LARFAA----QELLA----LG 80 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChH-HHHHHH----HHHHH----cC
Confidence 45689999999999999999999999976654322221 222467889999998775 444333 34544 99
Q ss_pred CccEEEeccchhhhh
Q 032854 97 INSIFVLERGFKGWE 111 (132)
Q Consensus 97 ~~~v~~l~gG~~~w~ 111 (132)
+++|++|+||+.+|.
T Consensus 81 ~~~v~~l~GG~~~W~ 95 (96)
T cd01529 81 GKPVALLDGGTSAWV 95 (96)
T ss_pred CCCEEEeCCCHHHhc
Confidence 999999999999995
No 31
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.83 E-value=3.2e-20 Score=146.91 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=87.0
Q ss_pred ccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccch-------------hHHHHHHHHHh--cCCCEEEEEc
Q 032854 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSF-------------TDKIFDLIQEV--RGKDTLVFHC 70 (132)
Q Consensus 6 ~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~-------------~~~~~~~~~~~--~~~~~ivv~c 70 (132)
..||++|+.++++.++++|||+|+..+|..||||||+|+|...+ .+.+...+..+ +++++||+||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 46999999999998789999999999999999999999985421 12445555443 5789999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCccccCC
Q 032854 71 ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD 122 (132)
Q Consensus 71 ~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~ 122 (132)
+.|...+. ++++.|+. +|+++|++|+||+.+|..+|+|++++..
T Consensus 89 ~~g~~~A~----R~~w~L~~----~G~~~V~iLdGG~~aW~~ag~p~~~~~~ 132 (610)
T PRK09629 89 DEGGGWAG----RFIWLLDV----IGHSGYHYLDGGVLAWEAQALPLSTDVP 132 (610)
T ss_pred CCCCchHH----HHHHHHHH----cCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence 87653332 34455544 9999999999999999999999987754
No 32
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.83 E-value=1.5e-20 Score=115.84 Aligned_cols=88 Identities=28% Similarity=0.579 Sum_probs=67.2
Q ss_pred CCeEEEeeCCCCCcCCCccCCccccCccchhHHH--------HHH--HHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHH
Q 032854 20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKI--------FDL--IQEVRGKDTLVFHCALSQVRGPTCAKRLANYLD 89 (132)
Q Consensus 20 ~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~--------~~~--~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~ 89 (132)
++.+|||+|+..+|..+|||||+|+|...+.... ... .....++++||+||.+|. ++..++ ..|+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~-~a~~~~----~~l~ 77 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGN-RSAKAA----WLLR 77 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCc-HHHHHH----HHHH
Confidence 4689999999999999999999999987754321 111 122357899999997664 444333 4554
Q ss_pred HHhhhcCCccEEEeccchhhhhhcCCC
Q 032854 90 EVKEDTGINSIFVLERGFKGWEASGKP 116 (132)
Q Consensus 90 ~~~~~~G~~~v~~l~gG~~~w~~~g~p 116 (132)
. .|+++|++|+||+.+|..++.|
T Consensus 78 ~----~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 78 E----LGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred H----cCCCceEEecCCHHHHHhcCCC
Confidence 4 9999999999999999988764
No 33
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.83 E-value=3.1e-20 Score=137.49 Aligned_cols=109 Identities=22% Similarity=0.330 Sum_probs=84.0
Q ss_pred cccccHHHHHhhhCCCCeEEEeeC--------C-CCCcCCCccCCccccCccchh-------------HHHHHHHHHh--
Q 032854 5 ISYISGSQLLSLKRRPNIAVIDVR--------D-DERSYDGHITGSLHYPSDSFT-------------DKIFDLIQEV-- 60 (132)
Q Consensus 5 ~~~is~~~~~~~~~~~~~~liD~R--------~-~~e~~~~hI~gai~ip~~~~~-------------~~~~~~~~~~-- 60 (132)
...||++++.++++.++++|||+| . ..+|..||||||+|++...+. +.+.+++..+
T Consensus 21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi 100 (320)
T PLN02723 21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGI 100 (320)
T ss_pred CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCC
Confidence 357999999999987789999996 2 267999999999999864432 2445555553
Q ss_pred cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCccccC
Q 032854 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCT 121 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~~ 121 (132)
.++++|||||..|...+. +++..|+. +|+++|++|+||+.+|..+|+|++++.
T Consensus 101 ~~~~~VVvY~~~g~~~a~----r~~~~L~~----~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 101 ENKDGVVVYDGKGIFSAA----RVWWMFRV----FGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred CCCCEEEEEcCCCcchHH----HHHHHHHH----cCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 478899999987753222 33345544 999999999999999999999998764
No 34
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.82 E-value=3.4e-20 Score=114.21 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=64.0
Q ss_pred hhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhc-CCCEEEEEcCCCCCC-cHHHHHHHHHHHHHHhh
Q 032854 16 LKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVR-GKDTLVFHCALSQVR-GPTCAKRLANYLDEVKE 93 (132)
Q Consensus 16 ~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~-~~~~ivv~c~~g~~~-~~~~a~~l~~~L~~~~~ 93 (132)
++.+++.+|||+|++.+|..+|||||+|+|...+.... ..... ++++||+||.+|.+. +..+ +..|++
T Consensus 5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~---~~~~~~~~~~ivl~c~~G~~~~s~~a----a~~L~~--- 74 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA---WVRIPRRDTPIVVYGEGGGEDLAPRA----ARRLSE--- 74 (92)
T ss_pred hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh---HhhCCCCCCeEEEEeCCCCchHHHHH----HHHHHH---
Confidence 44556789999999999999999999999976654321 11123 488999999987532 2333 345544
Q ss_pred hcCCccEEEeccchhhhh
Q 032854 94 DTGINSIFVLERGFKGWE 111 (132)
Q Consensus 94 ~~G~~~v~~l~gG~~~w~ 111 (132)
.|+++|++|+||+.+|.
T Consensus 75 -~G~~~v~~l~GG~~~W~ 91 (92)
T cd01532 75 -LGYTDVALLEGGLQGWR 91 (92)
T ss_pred -cCccCEEEccCCHHHHc
Confidence 99999999999999996
No 35
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.82 E-value=6.6e-20 Score=135.17 Aligned_cols=101 Identities=17% Similarity=0.308 Sum_probs=81.9
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHH--hcCCCEEEEEcCCCCCCcHHHH
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--VRGKDTLVFHCALSQVRGPTCA 81 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~--~~~~~~ivv~c~~g~~~~~~~a 81 (132)
....++++++.+++.+++++|||+|++.||..||||||+|+|...+.+....+... ..++++||+||.+|. ++..++
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~-Rs~~aa 188 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGI-RCEKAS 188 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCc-HHHHHH
Confidence 35679999999999877899999999999999999999999988876543333222 246789999999886 665555
Q ss_pred HHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 82 KRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 82 ~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
.+|.+ .||++|+.|+||+.+|...
T Consensus 189 ----~~L~~----~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 189 ----AWMKH----EGFKEVYQLEGGIITYGED 212 (314)
T ss_pred ----HHHHH----cCCCcEEEecchHHHHHHh
Confidence 45544 8999999999999999875
No 36
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.82 E-value=5.6e-20 Score=132.21 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=78.8
Q ss_pred cccccHHHHHhhhCC------CCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHh--cCCCEEEEEcCCCCCC
Q 032854 5 ISYISGSQLLSLKRR------PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQVR 76 (132)
Q Consensus 5 ~~~is~~~~~~~~~~------~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~--~~~~~ivv~c~~g~~~ 76 (132)
...++++++.+++.. ++.+|||+|++.||+.||||||+|+|...|.++..++.... .++++|++||.+|. +
T Consensus 109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~-R 187 (257)
T PRK05320 109 APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGI-R 187 (257)
T ss_pred CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCH-H
Confidence 477999999988764 24799999999999999999999999987765433322111 16889999999885 6
Q ss_pred cHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 77 ~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
+..++ ..|.+ .||++|+.|.||+.+|.++
T Consensus 188 s~~Aa----~~L~~----~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 188 CEKAA----IHMQE----VGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred HHHHH----HHHHH----cCCcceEEeccCHHHHHHh
Confidence 66665 44544 9999999999999999875
No 37
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.81 E-value=8.1e-20 Score=110.87 Aligned_cols=88 Identities=25% Similarity=0.514 Sum_probs=67.6
Q ss_pred HHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHh
Q 032854 13 LLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVK 92 (132)
Q Consensus 13 ~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~ 92 (132)
+.+++.+++..|||+|+..+|..+|||||+|+|...+.... .....+++++||+||..|. ++..++ ..|++
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~--~~~~~~~~~~vv~~c~~~~-~a~~~~----~~l~~-- 72 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA--ALLELDKDKPIVVYCRSGN-RSARAA----KLLRK-- 72 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH--HhhccCCCCeEEEEeCCCc-hHHHHH----HHHHH--
Confidence 34445566799999999999999999999999987655432 1223367899999999764 444444 45544
Q ss_pred hhcCCccEEEeccchhhhh
Q 032854 93 EDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 93 ~~~G~~~v~~l~gG~~~w~ 111 (132)
.|++++++|.||+.+|.
T Consensus 73 --~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 73 --AGGTNVYNLEGGMLAWK 89 (89)
T ss_pred --hCcccEEEecCChhhcC
Confidence 99999999999999994
No 38
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.1e-19 Score=113.38 Aligned_cols=100 Identities=25% Similarity=0.455 Sum_probs=79.3
Q ss_pred HHHHHhhhCCCCeEEEeeCCCCCcCCCccCC-ccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHH
Q 032854 10 GSQLLSLKRRPNIAVIDVRDDERSYDGHITG-SLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYL 88 (132)
Q Consensus 10 ~~~~~~~~~~~~~~liD~R~~~e~~~~hI~g-ai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L 88 (132)
......+...++.+|||+|++.||+.+|||| ++|+|...+........ .+.++++|+||.+|. ++..++ ..|
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~--~~~~~~ivv~C~~G~-rS~~aa----~~L 81 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE--LPDDDPIVVYCASGV-RSAAAA----AAL 81 (110)
T ss_pred HHHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc--cCCCCeEEEEeCCCC-ChHHHH----HHH
Confidence 3344444445678999999999999999999 99999988776544332 467899999999997 666665 445
Q ss_pred HHHhhhcCCccEEEeccchhhhhhcCCCcccc
Q 032854 89 DEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120 (132)
Q Consensus 89 ~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~ 120 (132)
+. .||.+++.+.||+.+|..+++|...+
T Consensus 82 ~~----~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 82 KL----AGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred HH----cCCccccccCCcHHHHHhcCCCcccC
Confidence 44 99998899999999999999988754
No 39
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.79 E-value=6.5e-19 Score=116.07 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=72.2
Q ss_pred ccHHHHHhhhC----CCCeEEEeeCCC--------CCcCC------------CccCCccccCccchh-------------
Q 032854 8 ISGSQLLSLKR----RPNIAVIDVRDD--------ERSYD------------GHITGSLHYPSDSFT------------- 50 (132)
Q Consensus 8 is~~~~~~~~~----~~~~~liD~R~~--------~e~~~------------~hI~gai~ip~~~~~------------- 50 (132)
+|++++.+.++ +++++|||+|+. .+|.. ||||||+|+|...+.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 58899999988 467999999987 88987 999999999865431
Q ss_pred HHHHHHHHH--hcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 51 DKIFDLIQE--VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 51 ~~~~~~~~~--~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
+.+.+++.. ++++++||+||.+.. .+..++ +++..|+. +|+++|++|+||+.+|.
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~-~g~~A~-r~~~~l~~----~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDL-GGFTAC-HIALAARL----CGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCC-cchHHH-HHHHHHHH----cCCCCeEEeCCCHHHhh
Confidence 144555544 357899999997511 122222 33444544 99999999999999995
No 40
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.78 E-value=3.4e-19 Score=111.50 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCcc
Q 032854 20 PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINS 99 (132)
Q Consensus 20 ~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~ 99 (132)
....+||+|++.+|..||||||+|+|...+...+.++. .+.+++||+||.+|. ++..++ ..|.+ .||++
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~--~~~~~~vvlyC~~G~-rS~~aa----~~L~~----~G~~~ 85 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAV--PDKNDTVKLYCNAGR-QSGMAK----DILLD----MGYTH 85 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhC--CCCCCeEEEEeCCCH-HHHHHH----HHHHH----cCCCe
Confidence 35679999999999999999999999887766555442 145679999999885 555554 44444 99999
Q ss_pred EEEeccchhhhhh
Q 032854 100 IFVLERGFKGWEA 112 (132)
Q Consensus 100 v~~l~gG~~~w~~ 112 (132)
++++ ||+.+|..
T Consensus 86 v~~~-GG~~~~~~ 97 (101)
T TIGR02981 86 AENA-GGIKDIAM 97 (101)
T ss_pred EEec-CCHHHhhh
Confidence 9986 99999964
No 41
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.78 E-value=1e-18 Score=127.31 Aligned_cols=104 Identities=17% Similarity=0.317 Sum_probs=77.1
Q ss_pred ccHHHHHhhhCCCCeEEEeeCCCCCcC-----------CCccCCccccCccchh--------HHHHHHHHH--hcCCCEE
Q 032854 8 ISGSQLLSLKRRPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFT--------DKIFDLIQE--VRGKDTL 66 (132)
Q Consensus 8 is~~~~~~~~~~~~~~liD~R~~~e~~-----------~~hI~gai~ip~~~~~--------~~~~~~~~~--~~~~~~i 66 (132)
.+.+++...+.+++.+|||+|+..+|. .||||||+|+|...+. ..+..++.. ++++++|
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~i 234 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPI 234 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCE
Confidence 455666666666678999999999984 6999999999976643 233333332 3678899
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh-cCCCcccc
Q 032854 67 VFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRC 120 (132)
Q Consensus 67 vv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~-~g~p~~~~ 120 (132)
|+||++|. ++..++ ..|+ .+||++|++|+||+..|.. .++|++++
T Consensus 235 i~yC~~G~-~A~~~~----~~l~----~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 235 IASCGSGV-TAAVVV----LALA----TLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred EEECCcHH-HHHHHH----HHHH----HcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 99999875 433333 3343 3899999999999999998 78999865
No 42
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.77 E-value=8.7e-19 Score=132.87 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=79.8
Q ss_pred cccccHHHHHhhhCCC-CeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHH
Q 032854 5 ISYISGSQLLSLKRRP-NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKR 83 (132)
Q Consensus 5 ~~~is~~~~~~~~~~~-~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~ 83 (132)
...|+++++.++++.+ +.+|||+|++.+|..+|||||+|+|...+... .....++++++||+||.+|. ++..++
T Consensus 286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~--~~~~~l~~d~~iVvyC~~G~-rS~~aa-- 360 (392)
T PRK07878 286 GSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSG--EALAKLPQDRTIVLYCKTGV-RSAEAL-- 360 (392)
T ss_pred CCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcch--hHHhhCCCCCcEEEEcCCCh-HHHHHH--
Confidence 4679999999988743 57899999999999999999999998776431 12233478899999999875 554444
Q ss_pred HHHHHHHHhhhcCCccEEEeccchhhhhhcCCC
Q 032854 84 LANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116 (132)
Q Consensus 84 l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p 116 (132)
..|.+ .||++|++|+||+.+|..+..+
T Consensus 361 --~~L~~----~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 361 --AALKK----AGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred --HHHHH----cCCCcEEEecCcHHHHHHhcCC
Confidence 44544 9999999999999999887543
No 43
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.77 E-value=2.3e-18 Score=127.59 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=79.7
Q ss_pred ccHHHHHhhhCCCCeEEEeeCCCCCc-----------CCCccCCccccCccchh---------HHHHHHHHH--hcCCCE
Q 032854 8 ISGSQLLSLKRRPNIAVIDVRDDERS-----------YDGHITGSLHYPSDSFT---------DKIFDLIQE--VRGKDT 65 (132)
Q Consensus 8 is~~~~~~~~~~~~~~liD~R~~~e~-----------~~~hI~gai~ip~~~~~---------~~~~~~~~~--~~~~~~ 65 (132)
++.+++.+.+..++.+|||+|++.+| ..||||||+|+|...+. +.+..++.. ++++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~ 271 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP 271 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence 68889998887667889999999888 56999999999975532 245555543 467889
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc-CCCccccC
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRCT 121 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~-g~p~~~~~ 121 (132)
||+||++|. ++...+ ..|+. +||++|++|+||+..|... .+|+++++
T Consensus 272 iv~yC~sG~-~A~~~~----~~L~~----~G~~~v~~YdGs~~eW~~~~~~Pv~~~~ 319 (320)
T PLN02723 272 IVASCGTGV-TACILA----LGLHR----LGKTDVPVYDGSWTEWGALPDTPVATST 319 (320)
T ss_pred EEEECCcHH-HHHHHH----HHHHH----cCCCCeeEeCCCHHHHhcCCCCCccCCC
Confidence 999999875 333222 33433 9999999999999999874 57887754
No 44
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.76 E-value=7.3e-19 Score=110.52 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=61.6
Q ss_pred CeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccE
Q 032854 21 NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSI 100 (132)
Q Consensus 21 ~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v 100 (132)
+-.|||+|++.+|..+|||||+|+|...+...+..+. .+.+++||+||.+|. ++..++ ..|.+ .||+++
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~--~~~~~~IVlyC~~G~-rS~~aa----~~L~~----~G~~~v 88 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAV--PDKNDTVKLYCNAGR-QSGQAK----EILSE----MGYTHA 88 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcC--CCCCCeEEEEeCCCh-HHHHHH----HHHHH----cCCCeE
Confidence 4579999999999999999999999877766554442 135678999999875 555554 44433 999999
Q ss_pred EEeccchhhhh
Q 032854 101 FVLERGFKGWE 111 (132)
Q Consensus 101 ~~l~gG~~~w~ 111 (132)
++ .||+.+|.
T Consensus 89 ~~-~GG~~~~~ 98 (104)
T PRK10287 89 EN-AGGLKDIA 98 (104)
T ss_pred Ee-cCCHHHHh
Confidence 87 69999995
No 45
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.76 E-value=3.5e-18 Score=111.62 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=71.7
Q ss_pred cccHHHHHhhhCC--CCeEEEeeCCCCCcCCCccCCccccCccchhH-HHH-------------HHHHHh--cCCCEEEE
Q 032854 7 YISGSQLLSLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTD-KIF-------------DLIQEV--RGKDTLVF 68 (132)
Q Consensus 7 ~is~~~~~~~~~~--~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~-~~~-------------~~~~~~--~~~~~ivv 68 (132)
.|+++++.++++. ++++|||+|+..+|..+|||||+|+|...+.. ... .....+ ..+++|||
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VVv 80 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGESLAVVV 80 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCCCCeEEE
Confidence 3799999999874 47899999999999999999999999875331 100 011111 15789999
Q ss_pred EcCCCCC----CcHHHHHHHHHHHHHHhhh-cCCccEEEeccchhhhhhc
Q 032854 69 HCALSQV----RGPTCAKRLANYLDEVKED-TGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 69 ~c~~g~~----~~~~~a~~l~~~L~~~~~~-~G~~~v~~l~gG~~~w~~~ 113 (132)
||..+.. .....+..+...|.. . .++.+|++|+||+.+|...
T Consensus 81 Yd~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 81 YDESSSDRERLREDSTAESVLGKLLR---KLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EeCCCcchhhccccchHHHHHHHHHH---hcCCCceEEEEcchHHHHHhh
Confidence 9987752 111222333333322 1 3667999999999999775
No 46
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.75 E-value=9.8e-18 Score=132.86 Aligned_cols=108 Identities=16% Similarity=0.256 Sum_probs=83.3
Q ss_pred cccHHHHHhhhCCCCeEEEeeCCCCCcC--------CCccCCccccCccch---------hHHHHHHHHH--hcCCCEEE
Q 032854 7 YISGSQLLSLKRRPNIAVIDVRDDERSY--------DGHITGSLHYPSDSF---------TDKIFDLIQE--VRGKDTLV 67 (132)
Q Consensus 7 ~is~~~~~~~~~~~~~~liD~R~~~e~~--------~~hI~gai~ip~~~~---------~~~~~~~~~~--~~~~~~iv 67 (132)
.++.+++.+.+++++.+|||+|++.+|. .||||||+|+|...+ .+.+.+++.. ++++++||
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VV 227 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVI 227 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence 5788999999887778999999999994 699999999997542 1245555544 36788999
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh-cCCCccccCCC
Q 032854 68 FHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA-SGKPVCRCTDV 123 (132)
Q Consensus 68 v~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~-~g~p~~~~~~~ 123 (132)
+||++|. ++..++ ..|+ .+||++|++++|||.+|.. .++|+++....
T Consensus 228 vYC~sG~-rAa~~~----~~L~----~lG~~~V~~YdGsw~eW~~~~~lPv~~~~~~ 275 (610)
T PRK09629 228 THCQTHH-RSGFTY----LVAK----ALGYPRVKAYAGSWGEWGNHPDTPVEVPTVA 275 (610)
T ss_pred EECCCCh-HHHHHH----HHHH----HcCCCCcEEeCCCHHHHhCCCCCccccCCCC
Confidence 9999875 433332 3343 3899999999999999987 46898876553
No 47
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.8e-17 Score=120.20 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=88.0
Q ss_pred cccccHHHHHhhhCCC-----CeEEEeeCCC--CCcCCCccCCccccCccchh-------------HHHHHHHHH--hcC
Q 032854 5 ISYISGSQLLSLKRRP-----NIAVIDVRDD--ERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--VRG 62 (132)
Q Consensus 5 ~~~is~~~~~~~~~~~-----~~~liD~R~~--~e~~~~hI~gai~ip~~~~~-------------~~~~~~~~~--~~~ 62 (132)
...+|++++.+.+..+ +..+++.+.. .+|.++|||||++++.+.+. +.+.+++.. +++
T Consensus 10 ~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~ 89 (285)
T COG2897 10 EFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRN 89 (285)
T ss_pred ceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 5569999999998854 5666666665 88999999999998866532 355666655 368
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCccccCCCccc
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK 126 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~ 126 (132)
+++||+|+..+...+..+ ++.|+. +|+++|++|+||+++|.++|+|++++...+.+
T Consensus 90 d~tVVvYdd~~~~~A~ra----~W~l~~----~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~ 145 (285)
T COG2897 90 DDTVVVYDDGGGFFAARA----WWLLRY----LGHENVRILDGGLPAWKAAGLPLETEPPEPPP 145 (285)
T ss_pred CCEEEEECCCCCeehHHH----HHHHHH----cCCCceEEecCCHHHHHHcCCCccCCCCCCCC
Confidence 899999998777554444 355555 99999999999999999999999987665443
No 48
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.74 E-value=4.2e-18 Score=125.36 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=66.2
Q ss_pred CeEEEeeCCCCCcCCCccCCccccCccchh------------------------------HHHHHHHHHhcCCCEEEEEc
Q 032854 21 NIAVIDVRDDERSYDGHITGSLHYPSDSFT------------------------------DKIFDLIQEVRGKDTLVFHC 70 (132)
Q Consensus 21 ~~~liD~R~~~e~~~~hI~gai~ip~~~~~------------------------------~~~~~~~~~~~~~~~ivv~c 70 (132)
+.+|||+|++.||.+||||||+|+|+.+.. ..+..+....+.+..||+||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 458999999999999999999999986422 11222222234455699999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCcccc
Q 032854 71 ALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRC 120 (132)
Q Consensus 71 ~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~ 120 (132)
..|+.++..++ .+|.. +|+ ++++|+||+.+|...+.+....
T Consensus 82 ~~gG~RS~~aa----~~L~~----~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 82 WRGGMRSGSLA----WLLAQ----IGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred CCCChHHHHHH----HHHHH----cCC-CEEEecChHHHHHHhhhhhhhc
Confidence 65444666555 45544 899 7999999999999988766554
No 49
>PRK07411 hypothetical protein; Validated
Probab=99.73 E-value=8.1e-18 Score=127.50 Aligned_cols=103 Identities=22% Similarity=0.405 Sum_probs=78.9
Q ss_pred CcccccHHHHHhhhCCC--CeEEEeeCCCCCcCCCccCCccccCccchhHH--HHHHHHHhcCCCEEEEEcCCCCCCcHH
Q 032854 4 SISYISGSQLLSLKRRP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--IFDLIQEVRGKDTLVFHCALSQVRGPT 79 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~--~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~--~~~~~~~~~~~~~ivv~c~~g~~~~~~ 79 (132)
.+..|+++++.++++.+ +.+|||+|++.||..||||||+|+|..++... ... +..+.++++||+||.+|. ++..
T Consensus 280 ~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~-l~~l~~d~~IVvyC~~G~-RS~~ 357 (390)
T PRK07411 280 EIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEK-VKELLNGHRLIAHCKMGG-RSAK 357 (390)
T ss_pred ccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHH-HhhcCCCCeEEEECCCCH-HHHH
Confidence 45779999999988743 57899999999999999999999998776531 112 222357889999999876 5555
Q ss_pred HHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCc
Q 032854 80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (132)
Q Consensus 80 ~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (132)
++ ..|++ .||++ +.|.||+.+|..+..|.
T Consensus 358 aa----~~L~~----~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 358 AL----GILKE----AGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred HH----HHHHH----cCCCe-EEecchHHHHHHhcCCC
Confidence 54 45544 89975 58999999998875553
No 50
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.73 E-value=1.3e-17 Score=124.37 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=72.9
Q ss_pred ccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhH--------------------------HHHHH----H
Q 032854 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD--------------------------KIFDL----I 57 (132)
Q Consensus 8 is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~--------------------------~~~~~----~ 57 (132)
....++.+++.+ +.+|||+|++.||..||||||+|+|..+..+ .+... .
T Consensus 3 ~~~~~~~~~~~~-~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~ 81 (345)
T PRK11784 3 PDAQDFRALFLN-DTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAW 81 (345)
T ss_pred CcHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHH
Confidence 346777776653 6899999999999999999999999864321 11111 1
Q ss_pred HHh-cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCccc
Q 032854 58 QEV-RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCR 119 (132)
Q Consensus 58 ~~~-~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~ 119 (132)
... +++++||+||..|+.++..++ ..|.. .|+ ++++|.||+.+|...+.+...
T Consensus 82 ~~~~~~~~~ivvyC~rgG~RS~~aa----~~L~~----~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 82 ADFPRANPRGLLYCWRGGLRSGSVQ----QWLKE----AGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HhcccCCCeEEEEECCCChHHHHHH----HHHHH----cCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 112 268899999965444665554 45544 899 699999999999987765543
No 51
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.5e-17 Score=120.53 Aligned_cols=107 Identities=19% Similarity=0.338 Sum_probs=81.8
Q ss_pred ccccHHHHHhhhCCCCeEEEeeCCCCCcCC----------CccCCccccCccchhH---------HHHHHHHH--hcCCC
Q 032854 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYD----------GHITGSLHYPSDSFTD---------KIFDLIQE--VRGKD 64 (132)
Q Consensus 6 ~~is~~~~~~~~~~~~~~liD~R~~~e~~~----------~hI~gai~ip~~~~~~---------~~~~~~~~--~~~~~ 64 (132)
...+.++++..+.....+|||+|++.+|.. ||||||+|+|...+.+ .+..+... ++.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~ 235 (285)
T COG2897 156 AVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDK 235 (285)
T ss_pred ccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCC
Confidence 446778888888877888999999999987 9999999999887643 44444433 57899
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc-CCCccccC
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS-GKPVCRCT 121 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~-g~p~~~~~ 121 (132)
++|+||++|.+.+. .. ..| +.+|+.++.+++|++..|... +.|++++.
T Consensus 236 ~vI~yCgsG~~As~-~~----~al----~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 236 EVIVYCGSGVRASV-TW----LAL----AELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred CEEEEcCCchHHHH-HH----HHH----HHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 99999999863332 21 123 337888889999999999874 56888775
No 52
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.69 E-value=3.5e-17 Score=122.74 Aligned_cols=95 Identities=21% Similarity=0.357 Sum_probs=72.7
Q ss_pred cccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHH
Q 032854 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRL 84 (132)
Q Consensus 5 ~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l 84 (132)
...++++++.++.. +.+|||+|++.+|..+|||||+|+|...+....... .++++++||+||.+|. ++..++
T Consensus 260 ~~~i~~~~~~~~~~--~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~~~--~~~~~~~IvvyC~~G~-rS~~Aa--- 331 (355)
T PRK05597 260 GEVLDVPRVSALPD--GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANPP--SVSAGDEVVVYCAAGV-RSAQAV--- 331 (355)
T ss_pred ccccCHHHHHhccC--CCEEEECCCHHHHccCcCCCCEEeCHHHhhhccccc--cCCCCCeEEEEcCCCH-HHHHHH---
Confidence 34678888885543 578999999999999999999999987765432211 1357889999999875 555444
Q ss_pred HHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 85 ANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 85 ~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
..|++ .||++|++|+||+.+|.+
T Consensus 332 -~~L~~----~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 332 -AILER----AGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred -HHHHH----cCCCCEEEecCcHHHHhh
Confidence 45544 999999999999999965
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.65 E-value=1.7e-16 Score=119.44 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=71.2
Q ss_pred ccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccC---CccccCccchhHHHH--HHHHHhcCCCEEEEEcCCCCCCcHHH
Q 032854 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGHIT---GSLHYPSDSFTDKIF--DLIQEVRGKDTLVFHCALSQVRGPTC 80 (132)
Q Consensus 6 ~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~---gai~ip~~~~~~~~~--~~~~~~~~~~~ivv~c~~g~~~~~~~ 80 (132)
.+++++++.+++.+++.+|||+|++.||+.+||| ||+|+|...+.+... ......++ .+||+||.+|. ++..+
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l~~~~~-~~Ivv~C~sG~-RS~~A 348 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHALSPIDG-DNVVVYCASGI-RSADF 348 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhccccCC-CcEEEECCCCh-hHHHH
Confidence 3689999999988767899999999999999998 599999888754211 11112233 38999999996 66666
Q ss_pred HHHHHHHHHHHhhhcCCcc-EEEeccchh
Q 032854 81 AKRLANYLDEVKEDTGINS-IFVLERGFK 108 (132)
Q Consensus 81 a~~l~~~L~~~~~~~G~~~-v~~l~gG~~ 108 (132)
+ ..|++ .||++ |+.|.||+.
T Consensus 349 a----~~L~~----~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 349 I----EKYSH----LGHELTLHNLPGGVN 369 (370)
T ss_pred H----HHHHH----cCCCCceEEeccccC
Confidence 5 44443 99986 999999975
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.59 E-value=5.3e-15 Score=106.53 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=81.5
Q ss_pred cccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHh--cCCCEEEEEcCCCCCCcHHHHH
Q 032854 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQVRGPTCAK 82 (132)
Q Consensus 5 ~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~--~~~~~ivv~c~~g~~~~~~~a~ 82 (132)
...|+|+++.+++.+++.++||.|...||.-||..||++.+...|.+...++.+.. -.+++|+.||..|. |+..+.
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RCEKas- 189 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI-RCEKAS- 189 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce-eehhhH-
Confidence 46799999999999889999999999999999999999999988877555444332 24679999999775 666655
Q ss_pred HHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 83 RLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 83 ~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
.+|.. .||++||.|+||+-.+.++
T Consensus 190 ---~~m~~----~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 190 ---AWMKE----NGFKEVYHLEGGILKYLED 213 (308)
T ss_pred ---HHHHH----hcchhhhcccchHHHHhhh
Confidence 45544 8999999999999776554
No 55
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=7e-15 Score=107.23 Aligned_cols=112 Identities=28% Similarity=0.447 Sum_probs=81.1
Q ss_pred CcccccHHHHHhhhCCC------CeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHh---cCCCEEEEEcCCCC
Q 032854 4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV---RGKDTLVFHCALSQ 74 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~------~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~---~~~~~ivv~c~~g~ 74 (132)
.+++||++.++.++++. ..+|||||-+.||..|||+||+|+...+..+.+.-..... .+...+|+||....
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefSq 233 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFSQ 233 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeeecc
Confidence 57899999999999831 4679999999999999999999998765433221111111 23457899999877
Q ss_pred CCcHHHHHHHHHHHHH----HhhhcCCccEEEeccchhhhhhcCC
Q 032854 75 VRGPTCAKRLANYLDE----VKEDTGINSIFVLERGFKGWEASGK 115 (132)
Q Consensus 75 ~~~~~~a~~l~~~L~~----~~~~~G~~~v~~l~gG~~~w~~~g~ 115 (132)
.|++.+|+.|....+. ....+-|..+|+|+|||..|.....
T Consensus 234 ~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~ 278 (325)
T KOG3772|consen 234 ERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYP 278 (325)
T ss_pred ccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcc
Confidence 7999888655532221 1233467899999999999987644
No 56
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.39 E-value=4.3e-12 Score=91.11 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=84.7
Q ss_pred ccccHHHHHhhhCCCCeEEEeeC---------CCCCcCCCccCCccccCccchh-------------HHHHHHHHH--hc
Q 032854 6 SYISGSQLLSLKRRPNIAVIDVR---------DDERSYDGHITGSLHYPSDSFT-------------DKIFDLIQE--VR 61 (132)
Q Consensus 6 ~~is~~~~~~~~~~~~~~liD~R---------~~~e~~~~hI~gai~ip~~~~~-------------~~~~~~~~~--~~ 61 (132)
..++++++.+++.+.+++|||+. ...||...|||||+++.++.+. +.+.+.... ..
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~ 84 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD 84 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence 56899999999998889999973 2366778899999998877652 233444433 36
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCccccCC
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTD 122 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~~~~~ 122 (132)
+++.+|||++. +.+...|.++++.++- +|+++|++|+||+.+|++.|+|+.++..
T Consensus 85 n~d~vViYd~~--~~Gm~~Asrv~W~fr~----fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 85 NGDHVVIYDRG--DGGMFSASRVWWTFRV----FGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred CCCeEEEEcCC--CcceeehhhHHHHHHH----hCccEEEEecCcHHHHHHcCCccccccc
Confidence 78899999983 2344445555555544 9999999999999999999999998765
No 57
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.37 E-value=8.9e-13 Score=102.55 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=60.6
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCC----ccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHH
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITG----SLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANY 87 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~g----ai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~ 87 (132)
+..+.+. ++.+|||+|++.||..+|||| |+|+|...+...+.. ++++++||+||.+|. +|..++ ..
T Consensus 399 ~~~~~~~-~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~~~----l~~~~~iivyC~~G~-rS~~aa----~~ 468 (482)
T PRK01269 399 ETVSELP-PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQFGD----LDQSKTYLLYCDRGV-MSRLQA----LY 468 (482)
T ss_pred HHHHhcC-CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHHhh----cCCCCeEEEECCCCH-HHHHHH----HH
Confidence 3344433 367899999999999999999 999998777654443 477889999999886 565555 44
Q ss_pred HHHHhhhcCCccEEEec
Q 032854 88 LDEVKEDTGINSIFVLE 104 (132)
Q Consensus 88 L~~~~~~~G~~~v~~l~ 104 (132)
|.+ .||++|+++.
T Consensus 469 L~~----~G~~nv~~y~ 481 (482)
T PRK01269 469 LRE----QGFSNVKVYR 481 (482)
T ss_pred HHH----cCCccEEecC
Confidence 544 8999998774
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.30 E-value=3.5e-12 Score=93.78 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=78.1
Q ss_pred cccccHHHHHhhhCC-CCeEEEeeCCCCCcCCCccCCccccCccchhHHHH-HHHHHh-cCCCEEEEEcCCCCCCcHHHH
Q 032854 5 ISYISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIF-DLIQEV-RGKDTLVFHCALSQVRGPTCA 81 (132)
Q Consensus 5 ~~~is~~~~~~~~~~-~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~-~~~~~~-~~~~~ivv~c~~g~~~~~~~a 81 (132)
-.+||..+++++++. +..++||+|++.+|+..|+|.|+|||+.++..... +..... ....+|+|+|..|+ .|+.+.
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGN-dSQ~Av 394 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGN-DSQRAV 394 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCC-chHHHH
Confidence 467999999999985 68899999999999999999999999988776444 221112 24567999999997 677776
Q ss_pred HHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 82 KRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 82 ~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
+. |++ +.+...|..+.||+.+|...
T Consensus 395 ~~----Lre---~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 395 RI----LRE---KFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred HH----HHh---hCCchhhhhhhhHHHHHHHh
Confidence 43 432 24445777888999999876
No 59
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=99.07 E-value=1.2e-09 Score=79.83 Aligned_cols=115 Identities=26% Similarity=0.384 Sum_probs=78.0
Q ss_pred CcccccHHHHHhhhCCC------CeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHH--hcCCCEEEEEcCCCCC
Q 032854 4 SISYISGSQLLSLKRRP------NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE--VRGKDTLVFHCALSQV 75 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~------~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~--~~~~~~ivv~c~~g~~ 75 (132)
..++||++.++.++++. +.+|||||-+.||..|||-.|+||.... .+..++.. +....-+|++|....-
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~---~l~~~F~hkplThp~aLifHCEfSsh 316 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTK---KLGLLFRHKPLTHPRALIFHCEFSSH 316 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHH---HHHHHHHhccccCceeEEEEeecccc
Confidence 57899999999998832 4679999999999999999999997432 23333221 2335679999985544
Q ss_pred CcHHHHHHHHHHHHHHhhhc--------CCccEEEeccchhhhhhcCCCccccCCCccc
Q 032854 76 RGPTCAKRLANYLDEVKEDT--------GINSIFVLERGFKGWEASGKPVCRCTDVPCK 126 (132)
Q Consensus 76 ~~~~~a~~l~~~L~~~~~~~--------G~~~v~~l~gG~~~w~~~g~p~~~~~~~~~~ 126 (132)
+++ .|+.+|+..-+.+ =|+.||+|+|||..+......++ .+..++.
T Consensus 317 RaP----~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~p~lC-dP~~YV~ 370 (427)
T COG5105 317 RAP----RLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDLC-DPKGYVT 370 (427)
T ss_pred cch----hHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcCcccc-Ccccccc
Confidence 544 4445665421112 25799999999999987743333 3333333
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.94 E-value=2.7e-09 Score=76.82 Aligned_cols=85 Identities=19% Similarity=0.402 Sum_probs=61.5
Q ss_pred CCCeEEEeeCCCCCcC-----------CCccCCccccCccchh---------HHHHHHHHH--hcCCCEEEEEcCCCCCC
Q 032854 19 RPNIAVIDVRDDERSY-----------DGHITGSLHYPSDSFT---------DKIFDLIQE--VRGKDTLVFHCALSQVR 76 (132)
Q Consensus 19 ~~~~~liD~R~~~e~~-----------~~hI~gai~ip~~~~~---------~~~~~~~~~--~~~~~~ivv~c~~g~~~ 76 (132)
..+...||.|+..+|. .||||||+|+|+..+- +.+...+.. +..++|+++-|++|.+.
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa 249 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISA 249 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhH
Confidence 3468899999998883 5899999999988742 234444333 34679999999999733
Q ss_pred cHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 77 GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 77 ~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
+..+ -.| .+.| .++.+++|++..|...
T Consensus 250 ~~i~-----~al----~r~g-~~~~lYdGS~~Ew~~~ 276 (286)
T KOG1529|consen 250 SIIA-----LAL----ERSG-PDAKLYDGSWTEWALR 276 (286)
T ss_pred HHHH-----HHH----HhcC-CCcceecccHHHHhhc
Confidence 2211 222 3489 7999999999999753
No 61
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.04 E-value=5.9e-06 Score=59.45 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=68.0
Q ss_pred cccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHH--------HHHHHHHh-----c----CCCEEEEE
Q 032854 7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDK--------IFDLIQEV-----R----GKDTLVFH 69 (132)
Q Consensus 7 ~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~--------~~~~~~~~-----~----~~~~ivv~ 69 (132)
.+|++|+.+.+..++++|+|||+ +..||.+|+|+-+..+..+ +..++... . +..++|+|
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vily 80 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILY 80 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeec
Confidence 47899999999988899999999 6789999999877665431 11111111 0 22568888
Q ss_pred cCC-CCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcC
Q 032854 70 CAL-SQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASG 114 (132)
Q Consensus 70 c~~-g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g 114 (132)
+.+ ..|.....+..+...|.+.++..|+ .++.|.|||..+..+.
T Consensus 81 D~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e~ 125 (343)
T KOG1717|consen 81 DESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAEA 125 (343)
T ss_pred ccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhhh
Confidence 865 1222222223333334444677897 8899999999887763
No 62
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.61 E-value=6.8e-05 Score=54.67 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=58.2
Q ss_pred HHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhH--HH----------------------------HHHHHHh
Q 032854 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTD--KI----------------------------FDLIQEV 60 (132)
Q Consensus 11 ~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~--~~----------------------------~~~~~~~ 60 (132)
+.+..++.+ +..|||+|.+-+|..|+.|+++|+|..+-.. .+ -.....+
T Consensus 6 q~~~~~~~~-~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f 84 (334)
T COG2603 6 QDYRALLLA-DTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF 84 (334)
T ss_pred HHHHHHHhc-CCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445444 5789999999999999999999999654211 00 0001111
Q ss_pred cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
-.+.|+-++|..|+.++...+.++-.. .|. +...+.||+.+.
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~-------~g~-~~~r~iGGeKal 126 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGYA-------AGI-DYPRVIGGEKAL 126 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHHH-------HHh-hhhhhhchHHHH
Confidence 244566677999998998888655321 464 444556887654
No 63
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=97.02 E-value=0.0036 Score=48.54 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=59.0
Q ss_pred cccHHHHHhhhC--CC--CeEEEeeCCCCCcCCCccCCccccCccchhH-------HHHHHHH----Hhc-----CCCEE
Q 032854 7 YISGSQLLSLKR--RP--NIAVIDVRDDERSYDGHITGSLHYPSDSFTD-------KIFDLIQ----EVR-----GKDTL 66 (132)
Q Consensus 7 ~is~~~~~~~~~--~~--~~~liD~R~~~e~~~~hI~gai~ip~~~~~~-------~~~~~~~----~~~-----~~~~i 66 (132)
.|++.|+.+.-+ .+ ...|||+|+.++|..||+..|.|++..-+-+ .+..+.. .++ .+.++
T Consensus 308 pisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHl 387 (669)
T KOG3636|consen 308 PISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHL 387 (669)
T ss_pred chhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceE
Confidence 467777765433 33 4579999999999999999999988665432 2222211 111 23554
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 67 VFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 67 vv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.+ -++|.........++...+.+ .|-..|.++.|||....
T Consensus 388 cf-mGsGr~EED~YmnMviA~FlQ----Knk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 388 CF-MGSGRDEEDNYMNMVIAMFLQ----KNKLYVSFVQGGYKKLH 427 (669)
T ss_pred EE-eccCcchHHHHHHHHHHHHHh----cCceEEEEecchHHHHH
Confidence 44 444532233333333333322 46668999999987543
No 64
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.98 E-value=0.0015 Score=41.41 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=33.2
Q ss_pred cccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCC--------------ccccCccc--hh-HHHHHHHHHhc-CCCEE
Q 032854 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITG--------------SLHYPSDS--FT-DKIFDLIQEVR-GKDTL 66 (132)
Q Consensus 5 ~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~g--------------ai~ip~~~--~~-~~~~~~~~~~~-~~~~i 66 (132)
...++++++.++.+.+-..||+.|+..|-. +-|. -+++|... +. +.+..+.+.+. ..+||
T Consensus 12 s~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pv 89 (110)
T PF04273_consen 12 SGQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPV 89 (110)
T ss_dssp ECS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSE
T ss_pred CCCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 357899999999888777999999986521 1111 12334321 21 12333322222 35799
Q ss_pred EEEcCCCC
Q 032854 67 VFHCALSQ 74 (132)
Q Consensus 67 vv~c~~g~ 74 (132)
++||.+|.
T Consensus 90 l~hC~sG~ 97 (110)
T PF04273_consen 90 LAHCRSGT 97 (110)
T ss_dssp EEE-SCSH
T ss_pred EEECCCCh
Confidence 99999986
No 65
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.86 E-value=0.0069 Score=39.61 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=42.3
Q ss_pred ccccHHHHHhhhCCCCeEEEeeCCCCCcCCCc----------cCCc--cccCcc--chh-HHHHHHHHHh-cCCCEEEEE
Q 032854 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYDGH----------ITGS--LHYPSD--SFT-DKIFDLIQEV-RGKDTLVFH 69 (132)
Q Consensus 6 ~~is~~~~~~~~~~~~~~liD~R~~~e~~~~h----------I~ga--i~ip~~--~~~-~~~~~~~~~~-~~~~~ivv~ 69 (132)
..++++++..+.+.+=..|||.|+..|-.... -+|- +++|.. .+. ..+..+...+ ..+.||++|
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~~~~~pvL~H 92 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIGAAEGPVLAY 92 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 56889999887665556899999987643211 0222 234432 121 1222222222 246899999
Q ss_pred cCCCCCCcH
Q 032854 70 CALSQVRGP 78 (132)
Q Consensus 70 c~~g~~~~~ 78 (132)
|.+|. |+.
T Consensus 93 C~sG~-Rt~ 100 (135)
T TIGR01244 93 CRSGT-RSS 100 (135)
T ss_pred cCCCh-HHH
Confidence 99997 543
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.54 E-value=0.0002 Score=56.65 Aligned_cols=94 Identities=21% Similarity=0.266 Sum_probs=61.0
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHH--HHh--cCCCEEEEEcCCCCCCcHH
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI--QEV--RGKDTLVFHCALSQVRGPT 79 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~--~~~--~~~~~ivv~c~~g~~~~~~ 79 (132)
.+++||++++..+ ....|+|.|...||..+|+++++|+|...-+..+.++. +.. ..+..++++.. + + .-
T Consensus 620 ~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~~~l~~~~~~~~~~~v~~~~-~--~-K~ 692 (725)
T KOG1093|consen 620 HCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWLRFLPGIVCSEGKKCVVVGK-N--D-KH 692 (725)
T ss_pred cCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHHHHhhcchHhHHhhCCeEEEecc-c--h-HH
Confidence 5788999998877 46889999999999999999999999985444443331 111 23344444443 2 1 22
Q ss_pred HHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 80 CAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 80 ~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
+++.. ..+.. +-+.++.++.+|+..
T Consensus 693 ~~e~~-~~~~~----mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 693 AAERL-TELYV----MKVPRICILHDGFNN 717 (725)
T ss_pred HHHHh-hHHHH----hcccHHHHHHHHHhh
Confidence 23222 22322 447788888888873
No 67
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.42 E-value=0.00068 Score=50.49 Aligned_cols=62 Identities=6% Similarity=-0.036 Sum_probs=46.6
Q ss_pred cccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEc
Q 032854 7 YISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHC 70 (132)
Q Consensus 7 ~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c 70 (132)
.-+++++.+.+.. ...++|+|....|..+||||++|+|...+..++.++... +...++++.-
T Consensus 15 i~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~~-~~~~~i~l~~ 76 (314)
T PRK00142 15 IEDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKAD-PRFADIRFKI 76 (314)
T ss_pred CCCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhhC-cCCCCceEEe
Confidence 4567778776664 467899999999999999999999997788888877642 1234554443
No 68
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.35 E-value=0.011 Score=44.12 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=48.1
Q ss_pred ccccHHHHHhhhCCCCeEEEeeCCCCCcCC---CccC-CccccCcc-chhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 6 SYISGSQLLSLKRRPNIAVIDVRDDERSYD---GHIT-GSLHYPSD-SFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 6 ~~is~~~~~~~~~~~~~~liD~R~~~e~~~---~hI~-gai~ip~~-~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
..++.+++++.+...+..|||+|+..+|.. |||+ +.. |.. .|...+...+..+++..+|++-|.+..
T Consensus 136 tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq~~fe~~L~~~l~~~~~~~~i~~e~es~~ 207 (311)
T TIGR03167 136 TGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQKRFENALAEALRRLDPGRPIFVEDESRR 207 (311)
T ss_pred CCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--CchHHHHHHHHHHHHhCCCCceEEEEeCchh
Confidence 457788899888876789999999999988 8888 532 222 244455444445577789999887653
No 69
>PLN02727 NAD kinase
Probab=94.38 E-value=0.22 Score=42.22 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=48.4
Q ss_pred cccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccC------------CccccCccc---h-hHHHHHHHHHh-c-CCCEE
Q 032854 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHIT------------GSLHYPSDS---F-TDKIFDLIQEV-R-GKDTL 66 (132)
Q Consensus 5 ~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~------------gai~ip~~~---~-~~~~~~~~~~~-~-~~~~i 66 (132)
...++++++..+.+.+--.||+.|+..+- .+..+ .-+++|... + .+.+..+.+.+ + -.+||
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPV 344 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPI 344 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCE
Confidence 46789999988887776789999998762 11110 123455422 1 13444444444 2 46899
Q ss_pred EEEcCCCCCC-cHHHHHHHH
Q 032854 67 VFHCALSQVR-GPTCAKRLA 85 (132)
Q Consensus 67 vv~c~~g~~~-~~~~a~~l~ 85 (132)
++||.+|.++ +...|.++.
T Consensus 345 LvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 345 YLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred EEECCCCCchHHHHHHHHHH
Confidence 9999999744 334443333
No 70
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.47 E-value=0.25 Score=31.79 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=43.0
Q ss_pred cccccHHHHHhhhCCCCeEEEeeCCCCCcC------------------CCccCCcc-ccCccchhHHHHHHHHHh-cCCC
Q 032854 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSY------------------DGHITGSL-HYPSDSFTDKIFDLIQEV-RGKD 64 (132)
Q Consensus 5 ~~~is~~~~~~~~~~~~~~liD~R~~~e~~------------------~~hI~gai-~ip~~~~~~~~~~~~~~~-~~~~ 64 (132)
.+.++++++.++...+-..||--||..|-. ..|||-.- -|.. ..+..+.+.+ .-+.
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~----~dV~~f~~Al~eaeg 88 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE----ADVEAFQRALDEAEG 88 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCH----HHHHHHHHHHHHhCC
Confidence 356999999999887777899999986531 23444221 2221 2333333332 3468
Q ss_pred EEEEEcCCCCCCc
Q 032854 65 TLVFHCALSQVRG 77 (132)
Q Consensus 65 ~ivv~c~~g~~~~ 77 (132)
|++-||.+|- |+
T Consensus 89 PVlayCrsGt-Rs 100 (130)
T COG3453 89 PVLAYCRSGT-RS 100 (130)
T ss_pred CEEeeecCCc-hH
Confidence 9999999885 44
No 71
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=92.53 E-value=0.17 Score=33.89 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=17.5
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCCCcC
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDERSY 34 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~e~~ 34 (132)
.+..+|+++...+.+-+=..|||.|++.|..
T Consensus 26 ~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~ 56 (164)
T PF13350_consen 26 NLSNLTEADLERLRELGIRTIIDLRSPTERE 56 (164)
T ss_dssp --TT--HHHHHHHHHTT--EEEE-S-HHHHH
T ss_pred CcCcCCHHHHHHHHhCCCCEEEECCCccccc
Confidence 4567889988877754445899999987754
No 72
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=92.07 E-value=1.8 Score=29.77 Aligned_cols=74 Identities=8% Similarity=0.222 Sum_probs=37.2
Q ss_pred CCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHh---cCCCEEEEEcCCC----CCC-----cHHHHHHHHH
Q 032854 19 RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV---RGKDTLVFHCALS----QVR-----GPTCAKRLAN 86 (132)
Q Consensus 19 ~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~---~~~~~ivv~c~~g----~~~-----~~~~a~~l~~ 86 (132)
+.++++||+-+. .....+.+++..++..+ .+++|||+.-.-. ... .....+....
T Consensus 59 ~a~~~~ld~~~N-------------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r 125 (178)
T PF14606_consen 59 DADLIVLDCGPN-------------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALR 125 (178)
T ss_dssp --SEEEEEESHH-------------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHH
T ss_pred CCCEEEEEeecC-------------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHH
Confidence 447899998764 45556666666555443 4688998877211 111 1111111111
Q ss_pred HHHHHhhhcCCccEEEecc
Q 032854 87 YLDEVKEDTGINSIFVLER 105 (132)
Q Consensus 87 ~L~~~~~~~G~~~v~~l~g 105 (132)
...+.+++.|.+++++++|
T Consensus 126 ~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 126 EAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHHHHHTT-TTEEEE-H
T ss_pred HHHHHHHHcCCCcEEEeCc
Confidence 1222355579999999987
No 73
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=91.18 E-value=0.69 Score=35.92 Aligned_cols=66 Identities=14% Similarity=0.363 Sum_probs=44.1
Q ss_pred ccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHH----------------------------------
Q 032854 37 HITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAK---------------------------------- 82 (132)
Q Consensus 37 hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~---------------------------------- 82 (132)
.||||.-+....+.+.+.+. .+..+|+|..+|. |+...++
T Consensus 249 aIPGAFGCGKTVISQsLSKY-----SNSD~iiYVGCGE-RGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPV 322 (618)
T KOG1352|consen 249 AIPGAFGCGKTVISQSLSKY-----SNSDAIIYVGCGE-RGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPV 322 (618)
T ss_pred ccCcccccchHHHHHHHhhc-----cCCCeEEEEcccc-cchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCch
Confidence 58999988877777777776 3445566666554 2222211
Q ss_pred -----------HHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 83 -----------RLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 83 -----------~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
.+++++ +++|| ||..+..+-..|.++
T Consensus 323 AAREASIYTGITlsEYf----RDmG~-nVsMmADStSRWAEA 359 (618)
T KOG1352|consen 323 AAREASIYTGITLSEYF----RDMGY-NVSMMADSTSRWAEA 359 (618)
T ss_pred hhhhhhhhhcccHHHHH----HhcCc-ceeeeecchhHHHHH
Confidence 334444 55897 999998999999765
No 74
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=90.90 E-value=1.2 Score=28.54 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=32.8
Q ss_pred CCCeEEEeeCCCCCcCCCccCC--ccccCccch-----hHHHH---HHHHH-hcCCCEEEEEcCCCCCCcHHH
Q 032854 19 RPNIAVIDVRDDERSYDGHITG--SLHYPSDSF-----TDKIF---DLIQE-VRGKDTLVFHCALSQVRGPTC 80 (132)
Q Consensus 19 ~~~~~liD~R~~~e~~~~hI~g--ai~ip~~~~-----~~~~~---~~~~~-~~~~~~ivv~c~~g~~~~~~~ 80 (132)
.+=..|||+++..++...+.+| -.++|..+. ...+. +++.. ...+.+|+|+|..|..|+...
T Consensus 26 ~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~ 98 (139)
T cd00127 26 LGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATL 98 (139)
T ss_pred cCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHH
Confidence 3345799999987751111111 123443322 12222 22222 235789999999997666544
No 75
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=90.32 E-value=1.8 Score=32.29 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=44.2
Q ss_pred HHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHH
Q 032854 10 GSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLD 89 (132)
Q Consensus 10 ~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~ 89 (132)
-.++.++.+..+..|+|+|.+ ......-.|.+. +-+.++|+.+.++...+...+ +..|.
T Consensus 76 dpel~~~A~~~g~~i~DvR~p-~~~~~~~~g~~~-----------------~~~~~rv~~vGTDcavGK~tT---al~L~ 134 (301)
T PF07755_consen 76 DPELAAAAKKNGVRIIDVRKP-PKDLPVASGRIR-----------------EVKAKRVLTVGTDCAVGKMTT---ALELR 134 (301)
T ss_dssp HHHHHCCHHCCT--EEETTS---SS-----SGGG-----------------G-SSEEEEEEESSSSSSHHHH---HHHHH
T ss_pred CHHHHHHHHHcCCeEeeccCC-CcccccccCccc-----------------cCCCCEEEEEccCccccHHHH---HHHHH
Confidence 456666666667899999998 433211122222 224566777766655555433 23344
Q ss_pred HHhhhcCCccEEEeccchhhhhhc--CCCcc
Q 032854 90 EVKEDTGINSIFVLERGFKGWEAS--GKPVC 118 (132)
Q Consensus 90 ~~~~~~G~~~v~~l~gG~~~w~~~--g~p~~ 118 (132)
+.+++.|+ ++..+.-|-.+|... |.++.
T Consensus 135 ~~l~~~G~-~a~fvaTGQTGimia~~Gv~iD 164 (301)
T PF07755_consen 135 RALRERGI-NAGFVATGQTGIMIAGYGVPID 164 (301)
T ss_dssp HHHHHTT---EEEEE-SHHHHHCHSEC--GG
T ss_pred HHHHHcCC-CceEEecCCceEEEecCCeecc
Confidence 45566998 777777778888754 44444
No 76
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=88.75 E-value=3.5 Score=26.37 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=14.9
Q ss_pred cCCCEEEEEcCCCCCCcHH
Q 032854 61 RGKDTLVFHCALSQVRGPT 79 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~ 79 (132)
..+.+|+|+|..|..|+..
T Consensus 76 ~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred cCCCeEEEECCCCCchHHH
Confidence 4678999999999756553
No 77
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=83.42 E-value=3.4 Score=31.41 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=40.2
Q ss_pred ccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCcccc--Ccc-chhHHHHHHHHHhcCCCEEEEEcCC
Q 032854 8 ISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHY--PSD-SFTDKIFDLIQEVRGKDTLVFHCAL 72 (132)
Q Consensus 8 is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~i--p~~-~~~~~~~~~~~~~~~~~~ivv~c~~ 72 (132)
...++++..+.+.+..+||+|+..+|.. +..|.+.. |.. .|...+...+..+++..+|+|=|.+
T Consensus 152 sGKT~iL~~L~~~~~~vlDlE~~aehrG-S~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~Es 218 (345)
T PRK11784 152 SGKTELLQALANAGAQVLDLEGLANHRG-SSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDES 218 (345)
T ss_pred ccHHHHHHHHHhcCCeEEECCchhhhcc-ccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEecc
Confidence 4456677777665778999999999864 33444433 332 2555555555555666677776654
No 78
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=83.05 E-value=2.3 Score=27.40 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
|+++|..+.-||+.+...+...+.+ .+-.++.+...|..+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~----~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQ----RLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHH----THTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccc----cccCCcEEEEEeeccc
Confidence 6888987666787776544444332 2335888999998877
No 79
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=80.01 E-value=2.7 Score=24.86 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
.|++.|.+|-..|..++..+...+ .+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~----~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKAL----KELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHH----HHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHH----HhccCc
Confidence 478999998755555555555544 558974
No 80
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=79.81 E-value=9.2 Score=23.21 Aligned_cols=42 Identities=10% Similarity=0.236 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.|++.|++|-..|...+..+...| .+.|+ ++.+.........
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l----~~~gi-~~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELC----QSHNI-PVELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHH----HHCCC-eEEEEEecHHHHh
Confidence 589999988655555555555544 45898 4555555555443
No 81
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=78.48 E-value=11 Score=22.39 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
.|+++|++|...+...+..+...+ .+.|.. ..+-..++...
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~----~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKL----KKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHH----HHCCCc-eEEEEcchhhC
Confidence 589999988655544454444444 447763 33444445444
No 82
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=77.80 E-value=6.1 Score=26.68 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCCCcHHHHHH
Q 032854 53 IFDLIQEVRGKDTLVFHCALSQVRGPTCAKR 83 (132)
Q Consensus 53 ~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~ 83 (132)
+-.+.+..+...|++++|-.|.++|..++.-
T Consensus 83 i~DF~~~wp~~apllIHC~aGISRStA~A~i 113 (172)
T COG5350 83 IIDFADEWPRFAPLLIHCYAGISRSTAAALI 113 (172)
T ss_pred HHHHHhcCccccceeeeeccccccchHHHHH
Confidence 3444555678899999999999999888754
No 83
>PRK12361 hypothetical protein; Provisional
Probab=76.58 E-value=12 Score=30.17 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=16.0
Q ss_pred cCCCEEEEEcCCCCCCcHHH
Q 032854 61 RGKDTLVFHCALSQVRGPTC 80 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~ 80 (132)
..+.+|+|+|..|..||...
T Consensus 173 ~~~~~VlVHC~~G~sRSa~v 192 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLV 192 (547)
T ss_pred HCCCeEEEECCCCCCcHHHH
Confidence 46789999999998887644
No 84
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=74.88 E-value=8.4 Score=26.27 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCCcHH
Q 032854 52 KIFDLIQEVRGKDTLVFHCALSQVRGPT 79 (132)
Q Consensus 52 ~~~~~~~~~~~~~~ivv~c~~g~~~~~~ 79 (132)
.+..+...+..+++|+++|..|--|+-.
T Consensus 122 i~~eL~~~L~~g~~V~vHC~GGlGRtGl 149 (168)
T PF05706_consen 122 ILEELAARLENGRKVLVHCRGGLGRTGL 149 (168)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSSSHHHH
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCHHHH
Confidence 3455555567889999999987555443
No 85
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=74.23 E-value=5.4 Score=32.12 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=15.8
Q ss_pred hhcCCccEEEeccchhhhhhc
Q 032854 93 EDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 93 ~~~G~~~v~~l~gG~~~w~~~ 113 (132)
+++|| +|..+...-+.|.++
T Consensus 317 RDmGy-~v~lmADSTSRWAEA 336 (588)
T COG1155 317 RDMGY-DVALMADSTSRWAEA 336 (588)
T ss_pred Hhhhh-hhHHhhchHHHHHHH
Confidence 44888 788888888899775
No 86
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.26 E-value=3.1 Score=31.47 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=28.7
Q ss_pred cccccHHHHHhhhC------CCCeEEEeeCCCCCcCCCccCCc
Q 032854 5 ISYISGSQLLSLKR------RPNIAVIDVRDDERSYDGHITGS 41 (132)
Q Consensus 5 ~~~is~~~~~~~~~------~~~~~liD~R~~~e~~~~hI~ga 41 (132)
...++++++.+.++ +.+..+||+|.+. |+..++|+-
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 45699999998873 3467899999988 988888744
No 87
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=70.84 E-value=11 Score=23.13 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
..|++.|+.|.-.|......+-..|++ .|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~----~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKE----LGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHH----cCCC
Confidence 368999999976676666666666655 8884
No 88
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=70.82 E-value=12 Score=25.47 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=15.4
Q ss_pred hcCCCEEEEEcCCCCCCcHH
Q 032854 60 VRGKDTLVFHCALSQVRGPT 79 (132)
Q Consensus 60 ~~~~~~ivv~c~~g~~~~~~ 79 (132)
...+..|+|+|..|..|+..
T Consensus 102 ~~~g~kVvVHC~~GigRSgt 121 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGT 121 (180)
T ss_pred HhcCCeEEEEcCCCCchHHH
Confidence 45677999999988777643
No 89
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=70.01 E-value=22 Score=21.61 Aligned_cols=42 Identities=10% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
...|++.|.+|.. +...+..+... +.+.|+ ++.+-..+....
T Consensus 3 ~~~ILl~C~~G~s-SS~l~~k~~~~----~~~~gi-~~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLVNKMNKA----AEEYGV-PVKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchh-HHHHHHHHHHH----HHHCCC-cEEEEEecHHHH
Confidence 3679999998864 33444444444 455887 455555555544
No 90
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.86 E-value=17 Score=25.76 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhcCCccEEEecc-chhhhhhc
Q 032854 83 RLANYLDEVKEDTGINSIFVLER-GFKGWEAS 113 (132)
Q Consensus 83 ~l~~~L~~~~~~~G~~~v~~l~g-G~~~w~~~ 113 (132)
.|+..-++.|..+||.||.+..| |..+|.+.
T Consensus 105 ~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 105 ELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 33444444577899999986664 78888764
No 91
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=68.18 E-value=12 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=16.4
Q ss_pred cCCCEEEEEcCCCCCCcHHHH
Q 032854 61 RGKDTLVFHCALSQVRGPTCA 81 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a 81 (132)
..+.+|+|+|..|..|+...+
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~ 91 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVA 91 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHH
T ss_pred cccceeEEEeCCCcccchHHH
Confidence 567899999999987765443
No 92
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=66.25 E-value=14 Score=29.25 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=43.9
Q ss_pred ccccHHHHHhhhC---------CCCeEEEeeCCC--CCcCCCccCCccccCccchh------------HHHHHHHHHhcC
Q 032854 6 SYISGSQLLSLKR---------RPNIAVIDVRDD--ERSYDGHITGSLHYPSDSFT------------DKIFDLIQEVRG 62 (132)
Q Consensus 6 ~~is~~~~~~~~~---------~~~~~liD~R~~--~e~~~~hI~gai~ip~~~~~------------~~~~~~~~~~~~ 62 (132)
-..+.+++...++ .++.+|||+-.. .+...--||-+..+|.+... ..+.+....+.-
T Consensus 218 mVkdVedlPrrI~EAFeiATSGRPGPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~l 297 (675)
T KOG4166|consen 218 MVKDVEDLPRRIEEAFEIATSGRPGPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISL 297 (675)
T ss_pred eeecHHHhhHHHHHHhhhhccCCCCCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHh
Confidence 3345555554443 447899998653 22334556666666653321 233444443444
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHH
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLA 85 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~ 85 (132)
.+.-|+||..|.-.+..+-+.|.
T Consensus 298 aKKPVlyvG~G~Ln~~d~p~lL~ 320 (675)
T KOG4166|consen 298 AKKPVLYVGGGCLNSSDGPRLLG 320 (675)
T ss_pred ccCceEEeCcccccCCcchHHHH
Confidence 55568899888766655554333
No 93
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=65.67 E-value=14 Score=22.97 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
.|++.|++|. .+...+..+...+ ++.|+ ++.+-..+...
T Consensus 3 kILlvCg~G~-STSlla~k~k~~~----~e~gi-~~~i~a~~~~e 41 (104)
T PRK09590 3 KALIICAAGM-SSSMMAKKTTEYL----KEQGK-DIEVDAITATE 41 (104)
T ss_pred EEEEECCCch-HHHHHHHHHHHHH----HHCCC-ceEEEEecHHH
Confidence 5899999887 3335554444444 55887 45444444443
No 94
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=63.94 E-value=9.5 Score=25.46 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=18.9
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
.+..+++++-.|....-.....++..|+ ++|..+...|+||-+.
T Consensus 99 ~~g~l~l~~vdg~~~~g~tl~ela~~l~----~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 99 ADGKLLLIVVDGRQSAGMTLDELAQLLK----SLGCVDAINLDGGGSS 142 (170)
T ss_dssp TTSEEEEEEE----S--B-HHHHHHHHH----HHT-SEEEE---GGG-
T ss_pred CCCcEEEEEEcCCcCCCCCHHHHHHHHH----HcCcCeEEEecCCcce
Confidence 3445555553331111122334445554 4999999999998663
No 95
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=63.69 E-value=19 Score=21.03 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=17.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
++++|.+|...+......+...+ .+.|+.
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f----~~~~i~ 30 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVL----KELGIE 30 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHH----HHCCCc
Confidence 78999988644444444444444 447764
No 96
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=63.39 E-value=33 Score=21.17 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
.|++.|..| -.+...+..+...+ ++.|+ ++.+-..+....
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a----~~~gi-~~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGA----KERGV-PLEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHH----HHCCC-cEEEEEeeHHHH
Confidence 488999877 46666665555555 44887 455555555443
No 97
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=63.38 E-value=12 Score=24.10 Aligned_cols=37 Identities=19% Similarity=0.501 Sum_probs=22.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
|+++|....-||+.+...+.. + .+ .++.+...|...|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~-~------~~-~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKA-I------VG-DRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHH-h------cC-CCEEEEcCcccCC
Confidence 577887665567666532221 1 23 3677788887766
No 98
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=62.01 E-value=40 Score=22.62 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=21.4
Q ss_pred cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEE
Q 032854 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV 102 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~ 102 (132)
....+|+++|..|+ .+ ..+-.++++|.+ .|++ |.+
T Consensus 23 ~~~~~v~il~G~Gn-NG-gDgl~~AR~L~~----~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NG-GDGLVAARHLAN----RGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSH-HH-HHHHHHHHHHHH----TTCE-EEE
T ss_pred cCCCeEEEEECCCC-Ch-HHHHHHHHHHHH----CCCe-EEE
Confidence 56789999998875 32 333455666655 8984 554
No 99
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=61.49 E-value=26 Score=23.45 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 52 KIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 52 ~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
+-..+...++++..+|+.+..|..-+ ...++.+|.. ....|..++..+-||-.|+..
T Consensus 56 E~~~il~~i~~~~~~i~Ld~~Gk~~s---S~~fA~~l~~-~~~~g~~~i~F~IGG~~G~~~ 112 (155)
T PF02590_consen 56 EGERILKKIPPNDYVILLDERGKQLS---SEEFAKKLER-WMNQGKSDIVFIIGGADGLSE 112 (155)
T ss_dssp HHHHHHCTSHTTSEEEEE-TTSEE-----HHHHHHHHHH-HHHTTS-EEEEEE-BTTB--H
T ss_pred HHHHHHhhccCCCEEEEEcCCCccCC---hHHHHHHHHH-HHhcCCceEEEEEecCCCCCH
Confidence 34445555567888888887774322 2233344432 234688899999998776644
No 100
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=60.88 E-value=34 Score=28.04 Aligned_cols=30 Identities=17% Similarity=0.513 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCc
Q 032854 83 RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (132)
Q Consensus 83 ~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (132)
.+++++ ++.|+ +|.++-.....|..+...+
T Consensus 309 TiAEYf----RD~G~-~Vllm~DS~sR~AeAlREI 338 (578)
T TIGR01043 309 TIAEYF----RDMGY-DVALMADSTSRWAEAMREI 338 (578)
T ss_pred HHHHHH----HHCCC-CEEEEecChhHHHHHHHHH
Confidence 455555 45997 8888889999998774443
No 101
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=60.50 E-value=33 Score=20.81 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=23.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
|++.|++|-..+ ..+..+...+ .+.|+ ++.+-..+....
T Consensus 2 Il~~Cg~G~sTS-~~~~ki~~~~----~~~~~-~~~v~~~~~~~~ 40 (96)
T cd05564 2 ILLVCSAGMSTS-ILVKKMKKAA----EKRGI-DAEIEAVPESEL 40 (96)
T ss_pred EEEEcCCCchHH-HHHHHHHHHH----HHCCC-ceEEEEecHHHH
Confidence 789999887444 4454555544 45887 455555555544
No 102
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=59.88 E-value=33 Score=24.84 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=15.8
Q ss_pred hcCCCEEEEEcCCCCCCcHHH
Q 032854 60 VRGKDTLVFHCALSQVRGPTC 80 (132)
Q Consensus 60 ~~~~~~ivv~c~~g~~~~~~~ 80 (132)
+..+.+|+|+|..|.-|+...
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl 187 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVL 187 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHH
Confidence 357789999999887666543
No 103
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=59.43 E-value=49 Score=23.03 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=21.8
Q ss_pred cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
+...+|+|+|..|+--+. +..++++|.. .|+ .|+++
T Consensus 43 ~~~~~v~vl~G~GNNGGD--Glv~AR~L~~----~~v-~V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGD--GFVVARHLKG----FGV-EVFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccH--HHHHHHHHHh----CCC-EEEEE
Confidence 456789999987752222 2334456643 676 56665
No 104
>PLN02645 phosphoglycolate phosphatase
Probab=59.22 E-value=64 Score=23.89 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=21.3
Q ss_pred CCCcccccHHHHHhhhCCCCeEEEeeCC
Q 032854 2 ARSISYISGSQLLSLKRRPNIAVIDVRD 29 (132)
Q Consensus 2 a~~~~~is~~~~~~~~~~~~~~liD~R~ 29 (132)
+.....++.+++.+++.+-+.+++|+--
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~D~DG 37 (311)
T PLN02645 10 AAAAQLLTLENADELIDSVETFIFDCDG 37 (311)
T ss_pred ccccccCCHHHHHHHHHhCCEEEEeCcC
Confidence 3346678888899988766789999754
No 105
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=58.93 E-value=24 Score=20.73 Aligned_cols=29 Identities=17% Similarity=0.467 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCC
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGI 97 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~ 97 (132)
.|+++|.+|...+......+...+ .+.++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~----~~~~i 30 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELL----KENGI 30 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHH----HHCCC
Confidence 589999988644444444444444 45776
No 106
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=58.89 E-value=21 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=13.0
Q ss_pred CCCEEEEEcCCCCCCcH
Q 032854 62 GKDTLVFHCALSQVRGP 78 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~ 78 (132)
...+|+|+|..|..|+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00404 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 36799999998865544
No 107
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=58.89 E-value=21 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=13.0
Q ss_pred CCCEEEEEcCCCCCCcH
Q 032854 62 GKDTLVFHCALSQVRGP 78 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~ 78 (132)
...+|+|+|..|..|+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00012 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 36799999998865544
No 108
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.09 E-value=53 Score=21.83 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=27.6
Q ss_pred cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccch
Q 032854 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF 107 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~ 107 (132)
..+..+|..|.... . ...+...+.+.|+..|..++.++-||.
T Consensus 61 ~~dv~vIgvSsl~g-~----h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 61 EEDVDVIGVSSLDG-G----HLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred hcCCCEEEEEeccc-h----HHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 56777888886432 2 223333455556669999999888884
No 109
>PRK10565 putative carbohydrate kinase; Provisional
Probab=57.75 E-value=56 Score=26.25 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=22.6
Q ss_pred hcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 60 ~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
++....|+|+|..|+ .+- .+..++++|.+ .|+ +|.++
T Consensus 57 ~~~~~~v~vl~G~GN-NGG-DG~v~AR~L~~----~G~-~V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGN-NGG-DGYVVARLAQA----AGI-DVTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCC-chH-HHHHHHHHHHH----CCC-ceEEE
Confidence 344567999998876 332 23455566654 898 44433
No 110
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=57.39 E-value=36 Score=21.47 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
+..+|++|.... .....+..+...| ++.|..++.++-||
T Consensus 50 ~~d~V~iS~~~~-~~~~~~~~~~~~L----~~~~~~~i~i~~GG 88 (122)
T cd02071 50 DVDVIGLSSLSG-GHMTLFPEVIELL----RELGAGDILVVGGG 88 (122)
T ss_pred CCCEEEEcccch-hhHHHHHHHHHHH----HhcCCCCCEEEEEC
Confidence 344666675432 2223333334434 44777777777776
No 111
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=57.01 E-value=30 Score=19.35 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=17.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
++++|..|...+......+...+ .+.++.
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~----~~~~~~ 30 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAA----KELGIE 30 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHH----HHCCCe
Confidence 78899887534444544444444 447763
No 112
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=54.83 E-value=51 Score=20.69 Aligned_cols=28 Identities=7% Similarity=0.312 Sum_probs=17.4
Q ss_pred cchhHHHHHHHHHhcCCCEEEEEcC-CCC
Q 032854 47 DSFTDKIFDLIQEVRGKDTLVFHCA-LSQ 74 (132)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~ivv~c~-~g~ 74 (132)
+++.+++.+.+..++.+..+++.++ .|+
T Consensus 42 ~~~~~~l~~~i~~~~~~~~vivltDl~GG 70 (116)
T TIGR00824 42 ETLQEKYNAALADLDTEEEVLFLVDIFGG 70 (116)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence 3466677777777666566565554 454
No 113
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=54.72 E-value=50 Score=20.50 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 48 SFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
++.+.+.+.+...+.+..++++|+-++
T Consensus 42 ~~~~~l~~~i~~~~~~~~vlil~Dl~g 68 (116)
T PF03610_consen 42 DFEEKLEEAIEELDEGDGVLILTDLGG 68 (116)
T ss_dssp HHHHHHHHHHHHCCTTSEEEEEESSTT
T ss_pred HHHHHHHHHHHhccCCCcEEEEeeCCC
Confidence 455566777766677888888887554
No 114
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=54.70 E-value=41 Score=22.58 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=20.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
+|.+++..+.--...|..+...|. ..|+ ++++|+|.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~----~~g~-~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLF----ARGI-KVYLLDGD 39 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH----HTTS--EEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH----HcCC-cEEEecCc
Confidence 455565433233445555555554 4896 99999885
No 115
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=53.80 E-value=82 Score=22.72 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEec-cchh
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE-RGFK 108 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~-gG~~ 108 (132)
++..+|+.|.... ....++. .-|..-+.+.||++|++-. .||.
T Consensus 136 k~e~~vlmgHGt~-h~s~~~Y---acLd~~~~~~~f~~v~v~~ve~yP 179 (265)
T COG4822 136 KDEILVLMGHGTD-HHSNAAY---ACLDHVLDEYGFDNVFVAAVEGYP 179 (265)
T ss_pred cCeEEEEEecCCC-ccHHHHH---HHHHHHHHhcCCCceEEEEecCCC
Confidence 6777888897432 2222222 1222234458888887543 4443
No 116
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=53.65 E-value=35 Score=20.70 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=20.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
+++-|.+|...+..++. .|++.+++.|++ +.+-
T Consensus 3 ~i~ac~~G~a~s~laa~----~L~~aa~~~g~~-~~ve 35 (96)
T cd05569 3 AVTACPTGIAHTYMAAE----ALEKAAKKLGWE-IKVE 35 (96)
T ss_pred EEEECCCchhHHHHHHH----HHHHHHHHCCCe-EEEE
Confidence 57789888755666654 444455669984 4433
No 117
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=52.13 E-value=39 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
.+|+|+|..|+ .+- .+..++++|.. .|+ +|.++
T Consensus 61 ~~V~VlcG~GN-NGG-DGlv~AR~L~~----~G~-~V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGN-NGG-DGLVAARHLAH----FGY-EVTVC 93 (246)
T ss_pred CeEEEEECCCC-Cch-hHHHHHHHHHH----CCC-eEEEE
Confidence 67999998775 322 22344566655 898 55544
No 118
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=51.64 E-value=85 Score=24.98 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEE
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFV 102 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~ 102 (132)
+.|+|+|+.|+ .+ ..+..++.+|.. .|++ |.+
T Consensus 60 ~~VlVlcG~GN-NG-GDGlv~AR~L~~----~G~~-V~v 91 (462)
T PLN03049 60 RRVLALCGPGN-NG-GDGLVAARHLHH----FGYK-PSI 91 (462)
T ss_pred CEEEEEECCCC-CH-HHHHHHHHHHHH----CCCc-eEE
Confidence 67999998886 33 223345566655 8984 443
No 119
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=51.29 E-value=84 Score=22.11 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=33.0
Q ss_pred ccccHHHHHhhhC--CCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 6 SYISGSQLLSLKR--RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 6 ~~is~~~~~~~~~--~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
..-|++++++... .++.+|+|+|.+..-- .++-..+.. .....|||+..+.|.
T Consensus 33 ~~~s~~~fL~~~~~~~pGclllDvrMPg~sG------------lelq~~L~~----~~~~~PVIfiTGhgD 87 (202)
T COG4566 33 CFASAEEFLAAAPLDRPGCLLLDVRMPGMSG------------LELQDRLAE----RGIRLPVIFLTGHGD 87 (202)
T ss_pred eecCHHHHHhhccCCCCCeEEEecCCCCCch------------HHHHHHHHh----cCCCCCEEEEeCCCC
Confidence 4467888887653 4578999999865411 112223333 256778888887664
No 120
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=50.88 E-value=57 Score=25.20 Aligned_cols=30 Identities=17% Similarity=0.500 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCc
Q 032854 83 RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (132)
Q Consensus 83 ~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (132)
.++++++ +.|+ +|-++-.....|..+...+
T Consensus 244 tiAEYfr----d~G~-dVll~~Ds~tR~A~A~REI 273 (369)
T cd01134 244 TIAEYFR----DMGY-NVALMADSTSRWAEALREI 273 (369)
T ss_pred HHHHHHH----HcCC-CEEEEEcChhHHHHHHHHH
Confidence 4555554 4896 8888888899998774433
No 121
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=50.65 E-value=26 Score=19.90 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=24.1
Q ss_pred CcccccHHHHHhhhC-CCCeEEEeeCCCCCc
Q 032854 4 SISYISGSQLLSLKR-RPNIAVIDVRDDERS 33 (132)
Q Consensus 4 ~~~~is~~~~~~~~~-~~~~~liD~R~~~e~ 33 (132)
....|+-+++.+++. +.+..|+|..+..+-
T Consensus 16 ~s~YiTL~di~~lV~~g~~~~V~D~ktgeDi 46 (64)
T PF07879_consen 16 TSSYITLEDIAQLVREGEDFKVVDAKTGEDI 46 (64)
T ss_pred CceeEeHHHHHHHHHCCCeEEEEECCCCccc
Confidence 356799999999988 457899999987664
No 122
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=50.37 E-value=75 Score=21.31 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 52 KIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 52 ~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
.-..+...++++..+|+.+..|..-+ ...++..|.+ ....|..++.++-||-.++..+
T Consensus 56 E~~~il~~l~~~~~~i~LDe~Gk~~s---S~~fA~~l~~-~~~~g~~~i~F~IGGa~G~~~~ 113 (157)
T PRK00103 56 EGERILAALPKGARVIALDERGKQLS---SEEFAQELER-WRDDGRSDVAFVIGGADGLSPA 113 (157)
T ss_pred HHHHHHhhCCCCCEEEEEcCCCCcCC---HHHHHHHHHH-HHhcCCccEEEEEcCccccCHH
Confidence 34445555666777888887775332 2344455543 2335666899999997776443
No 123
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=49.89 E-value=59 Score=26.76 Aligned_cols=30 Identities=17% Similarity=0.521 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCc
Q 032854 83 RLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (132)
Q Consensus 83 ~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (132)
.++++++ ++|+ +|-++-.....|..+..++
T Consensus 314 TiAEYfR----d~G~-~Vllm~DStSR~AeAlREI 343 (586)
T PRK04192 314 TIAEYYR----DMGY-DVLLMADSTSRWAEALREI 343 (586)
T ss_pred HHHHHHH----HCCC-CEEEEecChHHHHHHHHHH
Confidence 5556664 4997 8888989999998875444
No 124
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=49.43 E-value=46 Score=19.11 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=5.1
Q ss_pred cEEEeccch
Q 032854 99 SIFVLERGF 107 (132)
Q Consensus 99 ~v~~l~gG~ 107 (132)
.+.++.||-
T Consensus 33 ~~~lvhGga 41 (71)
T PF10686_consen 33 DMVLVHGGA 41 (71)
T ss_pred CEEEEECCC
Confidence 455666655
No 125
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=48.94 E-value=87 Score=25.72 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccE-EEec
Q 032854 49 FTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSI-FVLE 104 (132)
Q Consensus 49 ~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v-~~l~ 104 (132)
+......+...+.+..+|+||..... .+..++..+...|+. .|.+++ +++.
T Consensus 55 m~~a~~ri~~ai~~~e~I~I~gDyD~-DGitstail~~~L~~----~g~~~~~~~IP 106 (575)
T PRK11070 55 IEKAVELLYNALREGTRIIVVGDFDA-DGATSTALSVLALRS----LGCSNVDYLVP 106 (575)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCc-cHHHHHHHHHHHHHH----cCCCceEEEeC
Confidence 34455555555678889999987664 666666566665644 898544 4444
No 126
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=47.96 E-value=1e+02 Score=25.19 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
..|+|+|+.|+ .+- ....++.+|.. .|+ +|.++
T Consensus 136 ~~VlVlcGpGN-NGG-DGLVaAR~L~~----~G~-~V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGN-NGG-DGLVAARHLHH----FGY-KPFVC 168 (544)
T ss_pred CEEEEEECCCc-CHH-HHHHHHHHHHH----CCC-ceEEE
Confidence 57999998886 332 23344566654 898 45543
No 127
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=47.80 E-value=46 Score=26.09 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=32.1
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
+.|++.|+.|--+|...|. .|++.+++.|.+++.+.+-.+....
T Consensus 379 ~~iifaCDAGMGSSAMGAs----ilrkk~k~agl~~I~V~n~AIn~Lp 422 (472)
T COG2213 379 KKIIFACDAGMGSSAMGAS----ILRKKLKNAGLNDISVTNYAINNLP 422 (472)
T ss_pred eEEEEEEcCCCChhhhhHH----HHHHHHHhCCCCceeEeehhhhcCC
Confidence 4799999988766777764 4444556699988988877666554
No 128
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=47.49 E-value=55 Score=24.53 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=31.5
Q ss_pred CCCEEEEEcC--CCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCC
Q 032854 62 GKDTLVFHCA--LSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKP 116 (132)
Q Consensus 62 ~~~~ivv~c~--~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p 116 (132)
...|||++++ -|++--.....+|+..|.+ .|+ ++-++.-||.+ +..+.|
T Consensus 26 ~~vPVIsVGNitvGGTGKTP~v~~La~~l~~----~G~-~~~IlSRGYg~-~~~~~~ 76 (311)
T TIGR00682 26 APVPVVIVGNLSVGGTGKTPVVVWLAELLKD----RGL-RVGVLSRGYGS-KTKKYT 76 (311)
T ss_pred CCCCEEEEeccccCCcChHHHHHHHHHHHHH----CCC-EEEEECCCCCC-CCCCCe
Confidence 4568888875 2333334455566666655 897 88899988877 333443
No 129
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=45.82 E-value=48 Score=23.27 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCCcH----HHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 62 GKDTLVFHCALSQVRGP----TCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~----~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.-.++++||.++..... ..|+.+...| .+.| .-++.||..+-.
T Consensus 13 ~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~l----a~~g---~~V~tGG~~GiM 59 (205)
T COG1611 13 GIRQIVVICGSARGIEPEEYYELARELGREL----AKRG---LLVITGGGPGVM 59 (205)
T ss_pred CcceEEEEEeCCCCCCCHHHHHHHHHHHHHH----HhCC---cEEEeCCchhhh
Confidence 35678888876521122 2333444433 3355 456777765443
No 130
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=45.54 E-value=69 Score=26.28 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchh
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~ 108 (132)
.+.|||||.+.- ..+.+++.-| .++|| +++.|.||-.
T Consensus 516 ~~ppiIIFvN~k-----k~~d~lAk~L----eK~g~-~~~tlHg~k~ 552 (673)
T KOG0333|consen 516 FDPPIIIFVNTK-----KGADALAKIL----EKAGY-KVTTLHGGKS 552 (673)
T ss_pred CCCCEEEEEech-----hhHHHHHHHH----hhccc-eEEEeeCCcc
Confidence 467899998753 2344455555 55998 9999999864
No 131
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=44.70 E-value=1.1e+02 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 79 TCAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 79 ~~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
..|..+...| ...|+ ++|+|+|.
T Consensus 38 TiA~ale~~L----~~~G~-~~y~LDGD 60 (197)
T COG0529 38 TIANALEEKL----FAKGY-HVYLLDGD 60 (197)
T ss_pred HHHHHHHHHH----HHcCC-eEEEecCh
Confidence 3444455545 45998 99999985
No 132
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.27 E-value=50 Score=25.80 Aligned_cols=47 Identities=13% Similarity=-0.087 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCC--cHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 65 TLVFHCALSQVR--GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 65 ~ivv~c~~g~~~--~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
++.+||+..-+. -+.........|+ .+.++|+ ++.+|-||+.+|..+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh-~~ivLigd~ta~IgD 80 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGH-KPIVLIGDATAMIGD 80 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHH-HHHHCCC-eEEEEecccceecCC
Confidence 899999654322 1122211122232 2567997 888999999999866
No 133
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=44.24 E-value=44 Score=21.19 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=9.5
Q ss_pred EEEEEcCCCCCCcHHHH
Q 032854 65 TLVFHCALSQVRGPTCA 81 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a 81 (132)
.|+++|....-||+.+.
T Consensus 2 ~vlfvC~~N~cRS~mAE 18 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAE 18 (126)
T ss_pred eEEEEcCCcHHHHHHHH
Confidence 46777765444455443
No 134
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=43.45 E-value=46 Score=21.76 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
+.|+++|....-||+.+...+. . .. .++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~----~----~~-~~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLR----K----RL-PGVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHH----H----hc-CCeEEEcccccCC
Confidence 4689999765556666653222 2 22 2466677777655
No 135
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=43.19 E-value=79 Score=23.45 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
.|-+=|..|+-||...|+.++..|++ .|.-+|.+-
T Consensus 245 TIaIGCTGGqHRSV~iae~La~~l~~----~~~~~v~v~ 279 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAEQLAEYLRA----RGKYNVQVR 279 (286)
T ss_pred EEEEccCCCccchHHHHHHHHHHHHh----ccCceEEEe
Confidence 46677888888899889888888865 665466543
No 136
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=42.65 E-value=51 Score=21.16 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
.|+++|....-||+.+...+...+ +-.++.+...|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~-------~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLA-------PKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHh-------hhCCEEEECCCCCCc
Confidence 588899766656776653333221 102677777776543
No 137
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=42.32 E-value=1.1e+02 Score=24.33 Aligned_cols=57 Identities=23% Similarity=0.207 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 50 TDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 50 ~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
+-.+.+++...-+.-..|-+|++| +.+...|-+|++-. -|-++|-..+|.|.++...
T Consensus 95 Ei~~Aell~~~~p~~e~vrfvnSG-TEAtmsAiRlARa~------TgR~kIikF~G~YHG~~D~ 151 (432)
T COG0001 95 EVELAELLIERVPSIEKVRFVNSG-TEATMSAIRLARAY------TGRDKIIKFEGCYHGHSDS 151 (432)
T ss_pred HHHHHHHHHHhcCcccEEEEecch-hHHHHHHHHHHHHh------hCCCeEEEEcCCCCCCccH
Confidence 335666666555666788999988 46666666666533 5777898999988766543
No 138
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=41.67 E-value=96 Score=20.04 Aligned_cols=32 Identities=9% Similarity=-0.078 Sum_probs=20.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
-+..|-+|++..+...-.++..| +|.+++|++
T Consensus 92 ~lh~~iaGGRK~Ms~~~~~a~sl------~g~Drl~Hv 123 (124)
T TIGR03642 92 RIIVNISGGRKIMTIILALYAQL------LFEDEVYHI 123 (124)
T ss_pred eEEEEecCCHHHHHHHHHHHHHH------hCCcceeee
Confidence 46668788866665544444444 677788764
No 139
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=41.60 E-value=1.1e+02 Score=20.66 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 52 KIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 52 ~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
+-..+...+.++..+|+.+-.|..-+ ...++..|.. ++..| .++.++-||-.+...
T Consensus 56 E~~~il~~i~~~~~vi~Ld~~Gk~~s---Se~fA~~l~~-~~~~G-~~i~f~IGG~~Gl~~ 111 (155)
T COG1576 56 EGEAILAAIPKGSYVVLLDIRGKALS---SEEFADFLER-LRDDG-RDISFLIGGADGLSE 111 (155)
T ss_pred HHHHHHHhcCCCCeEEEEecCCCcCC---hHHHHHHHHH-HHhcC-CeEEEEEeCcccCCH
Confidence 45555666677888888776664322 2334444432 44578 799999999766543
No 140
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=41.01 E-value=1.6e+02 Score=22.33 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=47.4
Q ss_pred HHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHh--cCCCEEEEEcCCCCCCcHHHHHHHHHHH
Q 032854 11 SQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV--RGKDTLVFHCALSQVRGPTCAKRLANYL 88 (132)
Q Consensus 11 ~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~--~~~~~ivv~c~~g~~~~~~~a~~l~~~L 88 (132)
+|+...++. ..+-+|+|.+.|-. ....--+..+.+...+..++..+ +...+|+++..+=+ +..|+..++..+
T Consensus 95 ~el~s~~~~-r~~a~DlRgHGeTk---~~~e~dlS~eT~~KD~~~~i~~~fge~~~~iilVGHSmG--GaIav~~a~~k~ 168 (343)
T KOG2564|consen 95 SELKSKIRC-RCLALDLRGHGETK---VENEDDLSLETMSKDFGAVIKELFGELPPQIILVGHSMG--GAIAVHTAASKT 168 (343)
T ss_pred HHHHhhcce-eEEEeeccccCccc---cCChhhcCHHHHHHHHHHHHHHHhccCCCceEEEecccc--chhhhhhhhhhh
Confidence 344444432 35669999987633 33333466666666666666664 34567888886522 233333322222
Q ss_pred HHHhhhcCCccEEEecc
Q 032854 89 DEVKEDTGINSIFVLER 105 (132)
Q Consensus 89 ~~~~~~~G~~~v~~l~g 105 (132)
.. .-.|..-+-+++|
T Consensus 169 lp--sl~Gl~viDVVEg 183 (343)
T KOG2564|consen 169 LP--SLAGLVVIDVVEG 183 (343)
T ss_pred ch--hhhceEEEEEech
Confidence 11 1257766667764
No 141
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=40.53 E-value=33 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCCcH
Q 032854 52 KIFDLIQEVRGKDTLVFHCALSQVRGP 78 (132)
Q Consensus 52 ~~~~~~~~~~~~~~ivv~c~~g~~~~~ 78 (132)
.+-.++..++++..+++.|..|.-|..
T Consensus 113 ~fi~~v~~~p~~~~l~fhC~~G~GRTT 139 (149)
T PF14566_consen 113 AFINFVKSLPKDTWLHFHCQAGRGRTT 139 (149)
T ss_dssp HHHHHHHTS-TT-EEEEE-SSSSHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHH
Confidence 334444455678899999998865544
No 142
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=40.03 E-value=55 Score=25.39 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
....-++||++|. .+..+|-+++... .|-+++-.++++|.+|...
T Consensus 101 ~~~~~v~f~~SGs-eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~ 145 (433)
T PRK08117 101 GGLDCFFFSNSGA-EAIEGALKLAKHV------TKRPYIISFTGCFHGRTLG 145 (433)
T ss_pred CCCCEEEEeCcHH-HHHHHHHHHHHHh------cCCCeEEEECCCcCCcCHH
Confidence 3344678888774 4444454444322 4767888899999887643
No 143
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=39.66 E-value=1.3e+02 Score=21.13 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
..+|+++|..|+--+ ....++++|.. .|++
T Consensus 49 ~~~v~vlcG~GnNGG--DG~VaAR~L~~----~G~~ 78 (203)
T COG0062 49 ARRVLVLCGPGNNGG--DGLVAARHLKA----AGYA 78 (203)
T ss_pred CCEEEEEECCCCccH--HHHHHHHHHHh----CCCc
Confidence 567999998876222 23344566655 8974
No 144
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=39.47 E-value=72 Score=25.02 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
.-|+||++|. .+..+|-+++... .|-++|-.+++||.+|..
T Consensus 104 ~~v~f~~SGs-eA~e~AiklAr~~------tgr~~ii~~~~~YHG~t~ 144 (445)
T PRK08593 104 KRVTFGLSGS-DANDGIIKFARAY------TGRPYIISFTNAYHGSTY 144 (445)
T ss_pred CEEEECCchH-HHHHHHHHHHHHh------hCCCeEEEECCCcCCCcH
Confidence 3678888774 4445554444322 466678888999988853
No 145
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=38.76 E-value=1.5e+02 Score=21.30 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=43.1
Q ss_pred cccHHHHHhhhCC-CCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHh-----cCC-CEEEEEcCCCCCCcHH
Q 032854 7 YISGSQLLSLKRR-PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV-----RGK-DTLVFHCALSQVRGPT 79 (132)
Q Consensus 7 ~is~~~~~~~~~~-~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~-----~~~-~~ivv~c~~g~~~~~~ 79 (132)
.++.+++.+.+.. -+...+|.. ++......-+.+-|...+.+.+..+...+ .+. +.|.|....|+.-...
T Consensus 43 ~ls~~~l~~~la~~~~~p~vdl~---~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt 119 (274)
T TIGR03029 43 LINEDDIRQALSRQFEYPYLPPN---DGSFSPDLIAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSY 119 (274)
T ss_pred CCCHHHHHHHHHHHhCCCCcccc---ccccccccccccCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHH
Confidence 3455555554431 123445532 22222223334445555555555544332 233 3455555555433344
Q ss_pred HHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 80 CAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 80 ~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
.+..++..|.+ .|. +|-+++..
T Consensus 120 ~a~nLA~~la~----~g~-~VllID~D 141 (274)
T TIGR03029 120 IAANLAIVFSQ----LGE-KTLLIDAN 141 (274)
T ss_pred HHHHHHHHHHh----cCC-eEEEEeCC
Confidence 45555555544 785 77777663
No 146
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=38.43 E-value=84 Score=23.72 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=28.9
Q ss_pred cCCCEEEEEcC--CCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 61 RGKDTLVFHCA--LSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 61 ~~~~~ivv~c~--~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
....|||.+++ .|++--.....+++.+|.+ .|+ ++.++.-||.+
T Consensus 32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~----~G~-~~~IlSRGYg~ 77 (326)
T PF02606_consen 32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQA----RGY-RPAILSRGYGR 77 (326)
T ss_pred CCCCcEEEEcccccCCCCchHHHHHHHHHHHh----cCC-ceEEEcCCCCC
Confidence 34578888874 2333333445566666655 898 88899988875
No 147
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=38.13 E-value=1.2e+02 Score=20.26 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
.+.+.+...+..|+|+-+..+ .. + .+.+++...+...+.. ...+.-|++|.+|.
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~-~~-----~--~dYpd~a~~va~~V~~-g~~~~GIliCGtGi 70 (148)
T PRK05571 17 EIIEHLEELGHEVIDLGPDSY-DA-----S--VDYPDYAKKVAEAVVA-GEADRGILICGTGI 70 (148)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-CC-----C--CCHHHHHHHHHHHHHc-CCCCEEEEEcCCcH
Confidence 345555556788999876432 11 1 3444455555555433 23466788999985
No 148
>PRK08105 flavodoxin; Provisional
Probab=38.02 E-value=91 Score=20.44 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEec
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~ 104 (132)
+-.|+|+...+ .+...|..++..|. +.|+ .+.+++
T Consensus 3 ~i~I~YgS~tG-nte~~A~~l~~~l~----~~g~-~~~~~~ 37 (149)
T PRK08105 3 KVGIFVGTVYG-NALLVAEEAEAILT----AQGH-EVTLFE 37 (149)
T ss_pred eEEEEEEcCch-HHHHHHHHHHHHHH----hCCC-ceEEec
Confidence 34677776444 45666666666554 4887 455554
No 149
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=37.89 E-value=1.5e+02 Score=22.01 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc-cEEEeccchh
Q 032854 53 IFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN-SIFVLERGFK 108 (132)
Q Consensus 53 ~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~-~v~~l~gG~~ 108 (132)
+..+......+..+++||++ ...+..++..|++ .+.. ++..+.|++.
T Consensus 212 l~~l~~~~~~~~~~lVf~~t-----~~~~~~~~~~L~~----~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 212 LERLLEFIKKGGKIAIIVNT-----VDRAQEFYQQLKE----NAPEEEIMLLHSRFT 259 (358)
T ss_pred HHHHHHHhhCCCeEEEEECC-----HHHHHHHHHHHHh----hcCCCeEEEEECCCC
Confidence 34444444567889999974 2334455566654 5653 6888888863
No 150
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=37.87 E-value=55 Score=27.00 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
+..+|++.|++|.-.|...+..+.+.|++ .|++
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke----~GI~ 537 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDK----RGIP 537 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHH----cCCC
Confidence 44579999999987777777666666654 9984
No 151
>PRK10126 tyrosine phosphatase; Provisional
Probab=37.16 E-value=56 Score=21.33 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
..|+++|....-||+.+.. .|+. .+ ..+.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa----~~~~----~~-~~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAER----LLQR----YH-PELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHH----HHHH----hc-CCeEEEeeeccCC
Confidence 4689999866556766653 2222 33 2466667777555
No 152
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=37.15 E-value=2.1e+02 Score=23.20 Aligned_cols=46 Identities=15% Similarity=0.384 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc
Q 032854 48 SFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
++...+..+...+....+|++|+.... .+..++..+...|++ +|.+
T Consensus 39 ~~~~a~~~i~~~i~~~~~I~I~gh~D~-DGi~S~~~L~~~L~~----~g~~ 84 (539)
T TIGR00644 39 DMEKAVERIIEAIENNEKILIFGDYDV-DGITSTAILVEFLKD----LGVN 84 (539)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEccCC-CcHHHHHHHHHHHHH----CCCc
Confidence 345555666666677889999997654 566666666666655 8964
No 153
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=37.13 E-value=61 Score=21.80 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=15.0
Q ss_pred cCCCEEEEEcCCCCCCcHH
Q 032854 61 RGKDTLVFHCALSQVRGPT 79 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~ 79 (132)
..+.+|+|+|..|..|+..
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 4588999999998767654
No 154
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=36.71 E-value=84 Score=26.06 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEec
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~ 104 (132)
.+.++++|.+|...+......+...+ ++.+.+++.+..
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l----~~~~i~~i~i~~ 415 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKV----QDAGLSQISVTN 415 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHH----HHcCCCeeEEEE
Confidence 46799999988745554554555555 446765455444
No 155
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=36.56 E-value=1e+02 Score=24.57 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
-.-+.||++|. .+..+|-+++... -|-++|-.+.|+|.+|.
T Consensus 155 ~~~v~f~~SGs-EA~e~AlklAR~~------tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 155 VEMVRFVNSGT-EACMGVLRLARAY------TGREKIIKFEGCYHGHA 195 (474)
T ss_pred CCEEEEeCChH-HHHHHHHHHHHHh------cCCCEEEEECCccCCCc
Confidence 34688898873 5555554544322 47678888899999986
No 156
>PRK13530 arsenate reductase; Provisional
Probab=36.20 E-value=78 Score=20.35 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccch
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF 107 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~ 107 (132)
+.|+++|....-||+.+...+. .+ .| +++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~-~~------~~-~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGK-QY------LG-DKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHH-Hh------cC-CCEEEECCCC
Confidence 5688899765556665542222 11 23 4566677775
No 157
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=34.86 E-value=94 Score=23.64 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=28.4
Q ss_pred CCCEEEEEcC--CCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 62 GKDTLVFHCA--LSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 62 ~~~~ivv~c~--~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
...|||++.+ -|++--.....+|+..|.+ .|+ ++.++.-||.+
T Consensus 54 ~pvPVIsVGNitvGGTGKTP~v~~La~~l~~----~G~-~~~IlSRGYg~ 98 (338)
T PRK01906 54 LGVPVVVVGNVTVGGTGKTPTVIALVDALRA----AGF-TPGVVSRGYGA 98 (338)
T ss_pred CCCCEEEECCccCCCCChHHHHHHHHHHHHH----cCC-ceEEEecCCCC
Confidence 3567888874 2333334445566666654 897 88899988876
No 158
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=34.64 E-value=68 Score=22.89 Aligned_cols=42 Identities=21% Similarity=0.485 Sum_probs=25.5
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc-cEEEeccchhhhhh
Q 032854 67 VFHCALSQVRGPTCAKRLANYLDEVKEDTGIN-SIFVLERGFKGWEA 112 (132)
Q Consensus 67 vv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~-~v~~l~gG~~~w~~ 112 (132)
|+.|-.+...+..++.++...|.+ .|+. .|..+.++...|..
T Consensus 157 Iil~~D~D~AG~~Aa~r~~~~L~~----~G~~v~vv~lP~~~KDwNE 199 (218)
T TIGR00646 157 IFICFDNDFAGKNAAANLEEILKK----AGFITKVIEIKAAAKDWND 199 (218)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHH----CCCeEEEEeCCCcCCChhH
Confidence 444655555677777777766654 8984 34455666666644
No 159
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=34.52 E-value=1.2e+02 Score=19.99 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=21.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
|.+.+..|+.-....+..++..|.+ .|+ +|-+++..
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~----~g~-~VlliD~D 36 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALAR----KGK-KVLLIDLD 36 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH----TTS--EEEEEES
T ss_pred CEEEcCCCCccHHHHHHHHHhcccc----ccc-cccccccC
Confidence 4566666664544555556666644 886 77777663
No 160
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=34.37 E-value=70 Score=22.58 Aligned_cols=30 Identities=0% Similarity=-0.045 Sum_probs=21.0
Q ss_pred cCccchhHHHHHHHHHhcCCCEEEEEcCCC
Q 032854 44 YPSDSFTDKIFDLIQEVRGKDTLVFHCALS 73 (132)
Q Consensus 44 ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g 73 (132)
++..+....+...++..++++|+||...+-
T Consensus 75 ~ay~DV~~AF~~yL~~~n~GRPfILaGHSQ 104 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYNNGRPFILAGHSQ 104 (207)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEEeCh
Confidence 444444556667777778899999988753
No 161
>PRK06148 hypothetical protein; Provisional
Probab=34.24 E-value=1.1e+02 Score=26.84 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
-..++||++|. .+..+|-+++... .|-++|-.+++||.+|..
T Consensus 680 ~~~v~f~nSGs-EA~e~AlklAr~~------tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 680 LTVAFFVNSGS-EANSLALRLARAH------TGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred cCEEEEeCCcH-HHHHHHHHHHHHh------cCCCeEEEEcCCccCCCc
Confidence 35688999874 5555554554322 577788889999998864
No 162
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=33.94 E-value=59 Score=20.45 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=24.7
Q ss_pred CcccccHHHHHhhhC-CCCeEEEeeCCCCCc
Q 032854 4 SISYISGSQLLSLKR-RPNIAVIDVRDDERS 33 (132)
Q Consensus 4 ~~~~is~~~~~~~~~-~~~~~liD~R~~~e~ 33 (132)
....|+-+++.+++. +.+..|+|..+.++-
T Consensus 16 tS~YITLedi~~lV~~g~~f~V~DakTgeDi 46 (107)
T TIGR01848 16 TSSYVTLEDIRDLVREGREFQVVDSKSGDDL 46 (107)
T ss_pred ccceeeHHHHHHHHHCCCeEEEEECCCCchh
Confidence 356799999999988 457899999988775
No 163
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=33.75 E-value=1.1e+02 Score=24.02 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
-++||++|. .+..+|-+++... .|-.+|-.+.|||.+|...
T Consensus 117 ~v~f~~sGs-eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~ 157 (451)
T PRK06918 117 KVLFLNSGA-EAVENAVKIARKY------TKRQGIISFSRGFHGRTLM 157 (451)
T ss_pred EEEEcCCcH-HHHHHHHHHHHHH------hCCCcEEEECCCcCccchh
Confidence 588898874 5555555555432 4666788888999888643
No 164
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.71 E-value=1.3e+02 Score=19.36 Aligned_cols=40 Identities=25% Similarity=0.205 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
.+..+|+.|.... ........+...|+ ..|..++.++-||
T Consensus 52 ~~adii~iSsl~~-~~~~~~~~~~~~L~----~~g~~~i~vivGG 91 (132)
T TIGR00640 52 ADVHVVGVSSLAG-GHLTLVPALRKELD----KLGRPDILVVVGG 91 (132)
T ss_pred cCCCEEEEcCchh-hhHHHHHHHHHHHH----hcCCCCCEEEEeC
Confidence 4556777775432 22223333444443 3676667777776
No 165
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=33.36 E-value=37 Score=19.40 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=13.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHH
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDE 90 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~ 90 (132)
.++++|++|. ..+..+...|++
T Consensus 2 kilivC~~G~----~~s~~l~~~l~~ 23 (85)
T cd05568 2 KALVVCPSGI----GTSRLLKSKLKK 23 (85)
T ss_pred eEEEECCCCH----HHHHHHHHHHHH
Confidence 4889998775 234444455544
No 166
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=33.01 E-value=1.3e+02 Score=19.56 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=17.2
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEecc
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLER 105 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~g 105 (132)
...-+++|.+|+..+..+.-.+...+ .|.+-+|+.+.
T Consensus 90 ~~~~v~~n~TGGfK~~~~~~~~~g~~------~~~~v~Yi~E~ 126 (136)
T PF09651_consen 90 RGYEVIFNATGGFKAEIAYLTLLGML------YGDPVYYIFEE 126 (136)
T ss_dssp TT-EEEEE-SSS-HHHHHHHHHHHHH------T--EEEEEETT
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHH------cCCCEEEEEcC
Confidence 33447778888766655443333333 67655555543
No 167
>PRK04140 hypothetical protein; Provisional
Probab=32.48 E-value=2.2e+02 Score=21.53 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=39.0
Q ss_pred CCCeEEEeeCCCCC-cCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHH
Q 032854 19 RPNIAVIDVRDDER-SYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLAN 86 (132)
Q Consensus 19 ~~~~~liD~R~~~e-~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~ 86 (132)
+...++|..|...+ -+.|-+---.++|.-.+...+..++ .+.+.++|...|+.--......+..
T Consensus 69 ~a~p~ivg~~~~~~~le~gvvy~r~gi~~~~~~tl~~~~~----~g~~p~v~~~~Gg~~v~i~GerLk~ 133 (317)
T PRK04140 69 KASPLIIGLRTRNEELEDGVVYERHGIPALSPDTLYDDFV----EGEPPLIYAAPGGFYVKIDGDVLRE 133 (317)
T ss_pred CCccEEEEEecCCCccCCCcEEEecCceeecHHHHHHHHh----CCCCceEEEcCCCeeehhhHHHHHH
Confidence 55789999998754 4556555556677666666566665 3444466776665444444444443
No 168
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=32.43 E-value=82 Score=22.38 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=16.8
Q ss_pred HHHHhhhCCCCeEEEeeCCCC
Q 032854 11 SQLLSLKRRPNIAVIDVRDDE 31 (132)
Q Consensus 11 ~~~~~~~~~~~~~liD~R~~~ 31 (132)
.++.+++...+.+..|+-+.-
T Consensus 7 ~e~~~~~~~~~aVcFDvDSTv 27 (227)
T KOG1615|consen 7 SELAKLWRSADAVCFDVDSTV 27 (227)
T ss_pred HHHHHHHHhcCeEEEecCcch
Confidence 477788887789999998763
No 169
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.25 E-value=1.4e+02 Score=19.31 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=6.5
Q ss_pred hCCCCeEEEeeCC
Q 032854 17 KRRPNIAVIDVRD 29 (132)
Q Consensus 17 ~~~~~~~liD~R~ 29 (132)
++..++-++|+..
T Consensus 27 lr~~G~eVi~LG~ 39 (137)
T PRK02261 27 LTEAGFEVINLGV 39 (137)
T ss_pred HHHCCCEEEECCC
Confidence 3334555666543
No 170
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=32.18 E-value=1.3e+02 Score=18.65 Aligned_cols=30 Identities=7% Similarity=0.184 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
+.|++.|..|- .+...+..+.... .+.|++
T Consensus 4 kkIllvC~~G~-sTSll~~km~~~~----~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGM-STSLLVSKMRAQA----EKYEVP 33 (106)
T ss_pred CEEEEECCCCc-cHHHHHHHHHHHH----HHCCCC
Confidence 57999999886 3433433333333 346763
No 171
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=32.09 E-value=1.2e+02 Score=22.16 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc-cEEEecc
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN-SIFVLER 105 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~-~v~~l~g 105 (132)
|+||+|+-..+.....|. .|+++|..-|.+ .|++.+.
T Consensus 2 pLVvi~G~P~SGKstrA~----~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAV----ELREALKERGTKQSVRIIDD 39 (281)
T ss_pred CeEEEeCCCCCCchhHHH----HHHHHHHhhcccceEEEech
Confidence 688999644322334444 444455558855 6666665
No 172
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=31.57 E-value=1.7e+02 Score=21.75 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=24.8
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
-.|-+=|..|.=||...|+.++..|++ .|+.
T Consensus 243 ltIaiGCTGG~HRSV~iae~La~~L~~----~~~~ 273 (284)
T PF03668_consen 243 LTIAIGCTGGQHRSVAIAERLAERLRE----KGYT 273 (284)
T ss_pred EEEEEEcCCCcCcHHHHHHHHHHHHHh----cCCc
Confidence 367788888887899999888888866 7863
No 173
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.99 E-value=1.1e+02 Score=21.34 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=23.7
Q ss_pred CcccccHHHHHhhhCCCCeEEEeeCCCCCc
Q 032854 4 SISYISGSQLLSLKRRPNIAVIDVRDDERS 33 (132)
Q Consensus 4 ~~~~is~~~~~~~~~~~~~~liD~R~~~e~ 33 (132)
-+.+|+.+|..+.+.+ +.-|||+..+.|-
T Consensus 4 LvSPin~eEA~eAieG-GAdIiDVKNP~EG 32 (235)
T COG1891 4 LVSPINREEAIEAIEG-GADIIDVKNPAEG 32 (235)
T ss_pred eeccCCHHHHHHHhhC-CCceEeccCcccC
Confidence 3678999999998875 4679999999873
No 174
>PRK06917 hypothetical protein; Provisional
Probab=30.67 E-value=1.8e+02 Score=22.92 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
..++||++|. .+..+|-+++..-....-..|-++|-.+.|||.+|..
T Consensus 92 ~~v~f~~sGs-EAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~ 138 (447)
T PRK06917 92 NWSFFVNSGS-EANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITM 138 (447)
T ss_pred CEEEEeCChH-HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccH
Confidence 4688898774 5555554444321100001234568788899988754
No 175
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=30.54 E-value=1.5e+02 Score=20.34 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCC
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGI 97 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~ 97 (132)
+.+|+|....+ .....|+.++..|++ .|+
T Consensus 2 k~LIlYstr~G-qT~kIA~~iA~~L~e----~g~ 30 (175)
T COG4635 2 KTLILYSTRDG-QTRKIAEYIASHLRE----SGI 30 (175)
T ss_pred ceEEEEecCCC-cHHHHHHHHHHHhhh----cCC
Confidence 35788886544 455677778888875 776
No 176
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=30.52 E-value=1.9e+02 Score=21.23 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=15.2
Q ss_pred cCCCEEEEEcCCCCCCcH
Q 032854 61 RGKDTLVFHCALSQVRGP 78 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~ 78 (132)
..+..++|+|..|..|+.
T Consensus 153 ~~~~~vlVHC~~GvSRSa 170 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSA 170 (285)
T ss_pred hCCCeEEEEcCCccchhH
Confidence 467899999999987765
No 177
>PRK07046 aminotransferase; Validated
Probab=30.30 E-value=50 Score=26.00 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.-+.+|++|- .+...|-+++... -|-++|-.++|||.+|.
T Consensus 131 ~~v~F~nSGt-EA~e~AlrlAR~~------TGr~~ii~~~g~YHG~~ 170 (453)
T PRK07046 131 PYWQVATTAT-DANRFVLRWARAV------TGRPKILVFNGCYHGTV 170 (453)
T ss_pred CEEEEECCHH-HHHHHHHHHHHHh------hCCCEEEEECCCCCCCc
Confidence 3578899873 5555554554322 47778888999999984
No 178
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=30.15 E-value=2.1e+02 Score=20.50 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=26.8
Q ss_pred EEEcCCCCCCc--HHHHHHHHHHHHHHhhhcCCc-cEEE-----eccc--hhhhhhcCCCcccc
Q 032854 67 VFHCALSQVRG--PTCAKRLANYLDEVKEDTGIN-SIFV-----LERG--FKGWEASGKPVCRC 120 (132)
Q Consensus 67 vv~c~~g~~~~--~~~a~~l~~~L~~~~~~~G~~-~v~~-----l~gG--~~~w~~~g~p~~~~ 120 (132)
++++.+|.-++ ...|...+..|.++|.++|++ .|.- ..|| ...|.++|.|-..+
T Consensus 17 lLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pg 80 (219)
T PF11775_consen 17 LLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPG 80 (219)
T ss_pred EEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCCh
Confidence 44455554343 222222234444556668873 2221 1344 45888888775433
No 179
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=29.95 E-value=1.3e+02 Score=19.07 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=14.4
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHhhhcCC
Q 032854 67 VFHCALSQVRGPTCAKRLANYLDEVKEDTGI 97 (132)
Q Consensus 67 vv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~ 97 (132)
|+|+...+ .+...|+.++..|.+ .|+
T Consensus 1 I~Y~S~tG-~te~~A~~ia~~l~~----~g~ 26 (143)
T PF00258_consen 1 IVYGSMTG-NTEKMAEAIAEGLRE----RGV 26 (143)
T ss_dssp EEEETSSS-HHHHHHHHHHHHHHH----TTS
T ss_pred CEEECCch-hHHHHHHHHHHHHHH----cCC
Confidence 45554332 455666666665544 787
No 180
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=29.86 E-value=1.5e+02 Score=19.36 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
..|+++|....-||+.+-..+. .+ .+ .++.+...|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~-~~------~~-~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLR-HL------AP-DNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHH-Hh------cc-CCeEEECCccCC
Confidence 4689999866657777653222 22 23 688888888543
No 181
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.70 E-value=83 Score=24.72 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=23.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchh
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~ 108 (132)
-|+||.+- ..|.+++..|++ .|+ .|..|.|.+.
T Consensus 333 siIFc~tk-----~ta~~l~~~m~~----~Gh-~V~~l~G~l~ 365 (477)
T KOG0332|consen 333 SIIFCHTK-----ATAMWLYEEMRA----EGH-QVSLLHGDLT 365 (477)
T ss_pred eEEEEeeh-----hhHHHHHHHHHh----cCc-eeEEeeccch
Confidence 35667642 336677777765 997 8999999875
No 182
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=29.65 E-value=98 Score=26.18 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=26.3
Q ss_pred cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccch
Q 032854 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGF 107 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~ 107 (132)
..+..+|++|.... ........+...| +..|.+++.++-||.
T Consensus 631 ~~~a~ivvlcs~d~-~~~e~~~~l~~~L----k~~G~~~v~vl~GG~ 672 (714)
T PRK09426 631 ENDVHVVGVSSLAA-GHKTLVPALIEAL----KKLGREDIMVVVGGV 672 (714)
T ss_pred HcCCCEEEEeccch-hhHHHHHHHHHHH----HhcCCCCcEEEEeCC
Confidence 35667899997543 2222333444445 459988898888875
No 183
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=29.54 E-value=1.4e+02 Score=19.80 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=23.3
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 68 FHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 68 v~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
++|...+..-....+++...- .++|..|+.++-|+-.+
T Consensus 42 fVctaAGAMDLEnQ~Rvk~~a----Ek~g~eNvvVllGaaea 79 (154)
T PRK13265 42 FVUTAAGAMDLENQKRVKDLA----EKFGAENVVVILGAAEA 79 (154)
T ss_pred EEeecccccchHHHHHHHHHH----HhcCCccEEEEecccch
Confidence 456544333333444555544 45999999999888654
No 184
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=29.52 E-value=1.4e+02 Score=23.65 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
.-++||++|. .+..+|-+++... .|-++|-.+.+||.+|..
T Consensus 114 ~~v~f~~SGs-EA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~ 154 (457)
T PRK05639 114 PKVLFGLSGS-DAVDMAIKVSKFS------TRRPWILAFIGAYHGQTL 154 (457)
T ss_pred CEEEEeCchH-HHHHHHHHHHHHh------cCCCeEEEECCCcCCccH
Confidence 4578888774 4555554554322 466678888899988764
No 185
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=29.36 E-value=1.4e+02 Score=23.42 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.-++||++|. .+..+|-+++... .|-.+|-.+.+||.+|.
T Consensus 111 ~~v~f~~SGs-EA~e~AiklAr~~------tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 111 HKIRFVSSGT-EATMTAVRLARGI------TGRSIIIKFLGCYHGHA 150 (433)
T ss_pred CEEEEeCchH-HHHHHHHHHHHHh------hCCCEEEEEcCccCCCC
Confidence 3578888774 4445554444322 47667878889999986
No 186
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=29.26 E-value=1.7e+02 Score=19.33 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=31.9
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
.+++.++..++.|+|.-+... + + .+.+++...+...+.. ...+.-|++|.+|.
T Consensus 15 ~l~~~L~~~g~eV~D~G~~~~-~------~--~dYpd~a~~va~~V~~-g~~~~GIliCGtGi 67 (144)
T TIGR00689 15 EIIEHLKQKGHEVIDCGTLYD-E------R--VDYPDYAKLVADKVVA-GEVSLGILICGTGI 67 (144)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-C------C--CChHHHHHHHHHHHHc-CCCceEEEEcCCcH
Confidence 445556656789999976431 1 1 3444555555555543 23456788899884
No 187
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=29.07 E-value=1.9e+02 Score=25.25 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=28.6
Q ss_pred hcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 60 ~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
...+.|++|+|.+ ...+..++..|.+ .|+ ...+|.+....
T Consensus 441 ~~~g~PVLVgt~S-----ie~sE~ls~~L~~----~gi-~h~vLnak~~q 480 (896)
T PRK13104 441 GVRKQPVLVGTVS-----IEASEFLSQLLKK----ENI-KHQVLNAKFHE 480 (896)
T ss_pred HhCCCCEEEEeCc-----HHHHHHHHHHHHH----cCC-CeEeecCCCCh
Confidence 4688999999963 4456667777755 898 55678777654
No 188
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=28.67 E-value=1.1e+02 Score=24.67 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
.+..|||+.. | .++-.+|.+ |.+ .|+.++.+++|+
T Consensus 20 ~~~kIvIIGA-G-~AGLaAA~r----Lle----~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIGA-G-IAGLAAATR----LLE----NGFIDVLILEAS 54 (498)
T ss_pred CCceEEEECC-c-hHHHHHHHH----HHH----hCCceEEEEEec
Confidence 4556888775 3 356666643 333 799999999875
No 189
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=28.51 E-value=2.3e+02 Score=21.87 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
.-++||++|. .+..+|-+++..........|-++|-.+.|||.+|..
T Consensus 103 ~~v~f~~sGs-eA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~ 149 (423)
T PRK05964 103 DHVFFSDSGS-VAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTI 149 (423)
T ss_pred CEEEEeCCcH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccH
Confidence 3577888774 5555555554322110001245678889999988754
No 190
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=28.30 E-value=73 Score=24.95 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
.-++||++|. .+..+|-+++... .|-++|-.+.|||.+|..
T Consensus 116 ~~v~f~~SGs-EA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~ 156 (441)
T PRK05769 116 KKVFFTNSGT-ESNEAAIKIARYH------TGRKYIIAFLGAFHGRTY 156 (441)
T ss_pred CEEEECCchH-HHHHHHHHHHHHH------hCCCeEEEECCCcCCccH
Confidence 4688898874 5555554554422 476678888899988763
No 191
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=28.19 E-value=73 Score=20.00 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=15.8
Q ss_pred cHHHHHhhhCCCC-eEEEeeCCCC
Q 032854 9 SGSQLLSLKRRPN-IAVIDVRDDE 31 (132)
Q Consensus 9 s~~~~~~~~~~~~-~~liD~R~~~ 31 (132)
+.+++.+++...+ -+|||||...
T Consensus 1 ~~e~f~~~l~~~~i~~lVDVR~~P 24 (122)
T PF04343_consen 1 SIERFYDLLKKNGIRVLVDVRLWP 24 (122)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCC
Confidence 3567777666444 4899999754
No 192
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=28.06 E-value=78 Score=20.23 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=7.3
Q ss_pred EEEEcCCCCCCcHHHH
Q 032854 66 LVFHCALSQVRGPTCA 81 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a 81 (132)
|+++|....-||+.+.
T Consensus 1 iLFvC~~N~~RS~mAe 16 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAE 16 (129)
T ss_pred CEEEcCCchHHHHHHH
Confidence 3555654433444443
No 193
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=27.83 E-value=2e+02 Score=19.72 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=31.7
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
.+++.++..+..|+|+-+..+ + + .+.+++...+...+.. ...+.-|++|.+|.
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~-e------~--~dYpd~a~~va~~V~~-g~~d~GIliCGTGi 69 (171)
T PRK08622 17 AVSDYLKSKGHEVIDVGTYDF-T------R--THYPIFGKKVGEAVAS-GEADLGVCICGTGV 69 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-C------C--CChHHHHHHHHHHHHc-CCCcEEEEEcCCcH
Confidence 445555555788999987542 1 1 2344455555555433 33467788999985
No 194
>PHA02031 putative DnaG-like primase
Probab=27.65 E-value=2.6e+02 Score=20.71 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCc-cEEEeccch
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGIN-SIFVLERGF 107 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~-~v~~l~gG~ 107 (132)
++.|++|+ |...+..++.+....|.. .|.+ +|..|.+|.
T Consensus 207 ~~Vil~fD--gD~AG~~Aa~ra~~~l~~----~~~~v~vv~lP~g~ 246 (266)
T PHA02031 207 PRVLIFLD--GDPAGVDGSAGAMRRLRP----LLIEGQVIITPDGF 246 (266)
T ss_pred CCEEEEeC--CCHHHHHHHHHHHHHHHH----cCCceEEEECCCCC
Confidence 45555555 444677777766666644 7763 444565774
No 195
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=27.44 E-value=85 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.-++||++|. .+..+|-+++... .|-++|-.+.+||.+|.
T Consensus 95 ~~v~f~~sGs-eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 95 KKSVFFNSGA-EAVENAVKIARSY------TGRPGVVAFDHGFHGRT 134 (420)
T ss_pred CEEEEeCCcH-HHHHHHHHHHHHh------cCCCcEEEECCCcCCCc
Confidence 3578888774 5555555555322 46667878889888774
No 196
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=27.41 E-value=70 Score=22.14 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=12.6
Q ss_pred CCCEEEEEcCCCCCCcH
Q 032854 62 GKDTLVFHCALSQVRGP 78 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~ 78 (132)
.....+++|-.|.+|+.
T Consensus 93 ~gG~TLvHC~AGVSRSA 109 (198)
T KOG1718|consen 93 RGGKTLVHCVAGVSRSA 109 (198)
T ss_pred cCCcEEEEEccccchhH
Confidence 44567899999987763
No 197
>PTZ00346 histone deacetylase; Provisional
Probab=27.14 E-value=3.2e+02 Score=21.71 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=12.6
Q ss_pred hhcCCccEEEeccchh
Q 032854 93 EDTGINSIFVLERGFK 108 (132)
Q Consensus 93 ~~~G~~~v~~l~gG~~ 108 (132)
++.+.+-+.++.|||.
T Consensus 304 ~~~~~plv~vleGGY~ 319 (429)
T PTZ00346 304 RDLGIPMLALGGGGYT 319 (429)
T ss_pred HhcCCCEEEEeCCcCC
Confidence 3478777889999986
No 198
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=27.05 E-value=1.1e+02 Score=22.49 Aligned_cols=59 Identities=10% Similarity=0.122 Sum_probs=32.1
Q ss_pred CCeEEEeeCCCCCcCCCccCCccccCc--cchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHH
Q 032854 20 PNIAVIDVRDDERSYDGHITGSLHYPS--DSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPT 79 (132)
Q Consensus 20 ~~~~liD~R~~~e~~~~hI~gai~ip~--~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~ 79 (132)
.+..+++ +......--.+-|.+++|. +.....+.+++...+..+++++++-..+..|..
T Consensus 98 ~G~~~f~-~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~~~~~~iiVDFHAEtTSEK 158 (266)
T COG1692 98 KGSRIFK-INGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIKLGTDLIIVDFHAETTSEK 158 (266)
T ss_pred ceEEEEE-eCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCccCCceEEEEccccchhhh
Confidence 3455666 3333333344556666664 233345666666666777788888655434433
No 199
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=26.87 E-value=1.8e+02 Score=22.25 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=25.7
Q ss_pred CEEEEEcCC--CCC-CcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 64 DTLVFHCAL--SQV-RGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 64 ~~ivv~c~~--g~~-~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
.|||++.+- |+. ..+.+ -+++..|.+ .|+ ++.++.-||.+
T Consensus 47 vPVI~VGNltvGGtGKTP~v-i~la~~l~~----rG~-~~gvvSRGYgg 89 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVV-IWLAEALQA----RGV-RVGVVSRGYGG 89 (336)
T ss_pred CCEEEEccEEECCCCcCHHH-HHHHHHHHh----cCC-eeEEEecCcCC
Confidence 678887741 211 34444 355555544 998 88899988877
No 200
>PRK06149 hypothetical protein; Provisional
Probab=26.54 E-value=1.7e+02 Score=25.60 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=27.8
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
..-+++|++|. .+..+|-+++... .|-+++-.+++||.+|.
T Consensus 641 ~~~v~f~~SGs-EA~e~AlklAr~~------tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 641 LDTVFLVNSGS-EANDLAIRLAWAA------SGRRDVVSVLEAYHGWT 681 (972)
T ss_pred cCEEEEeCCch-HHHHHHHHHHHHh------cCCCeEEEEeCCCCCcC
Confidence 45678888874 5555554544432 57677888899999876
No 201
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=26.42 E-value=3.3e+02 Score=22.70 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=25.9
Q ss_pred hcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchh
Q 032854 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (132)
Q Consensus 60 ~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~ 108 (132)
...+..++|+|.+ ...+..++..|.. .|+ ++..+.|++.
T Consensus 443 ~~~g~~viIf~~t-----~~~ae~L~~~L~~----~gi-~~~~~h~~~~ 481 (652)
T PRK05298 443 VAKGERVLVTTLT-----KRMAEDLTDYLKE----LGI-KVRYLHSDID 481 (652)
T ss_pred HhCCCEEEEEeCC-----HHHHHHHHHHHhh----cce-eEEEEECCCC
Confidence 3567789999964 3445666666654 887 6667766654
No 202
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.20 E-value=2.5e+02 Score=22.38 Aligned_cols=46 Identities=13% Similarity=0.315 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCCCC-----cHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 63 KDTLVFHCALSQVR-----GPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 63 ~~~ivv~c~~g~~~-----~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
.+.|||+..+.... +..+|..++++++. -|. +|-.+-.+...|..+
T Consensus 218 ~rsViVvATSD~s~l~R~~aa~~At~IAEyFRD----qG~-~VLL~mDSlTRfA~A 268 (441)
T COG1157 218 KRSVVVVATSDESALMRLKAAFTATTIAEYFRD----QGK-RVLLIMDSLTRFAMA 268 (441)
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh----CCC-eEEEEeecHHHHHHH
Confidence 35566655544211 23345567777755 995 888888899999765
No 203
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=26.09 E-value=2.2e+02 Score=22.42 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
..++||++|. .+...|-+++.... ...|-.+|-.+.++|.+|..
T Consensus 135 ~~v~f~~SGs-EA~e~AlklAr~~t---~~~gr~~ii~~~~~yHG~t~ 178 (442)
T TIGR03372 135 KYSFFCNSGT-ESVEAALKLAKAYQ---SPRGKFTFIAASGAFHGKSL 178 (442)
T ss_pred CEEEEeCCch-HHHHHHHHHHHHHH---hhcCCcEEEEECCCccCCCH
Confidence 5678898774 44445544443221 01265678888898888754
No 204
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=26.02 E-value=88 Score=16.20 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=17.7
Q ss_pred cCccchhHHHHHHHHHhcCCCEEEEEcC
Q 032854 44 YPSDSFTDKIFDLIQEVRGKDTLVFHCA 71 (132)
Q Consensus 44 ip~~~~~~~~~~~~~~~~~~~~ivv~c~ 71 (132)
++..++...+.+++.....+.||++--+
T Consensus 2 v~~te~r~~~~~~l~~v~~~~pv~It~~ 29 (52)
T TIGR01552 2 VSLSEAKNKLGELLKRVRDGEPVTITKR 29 (52)
T ss_pred cCHHHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 3455677777777777655557666443
No 205
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=25.90 E-value=1.9e+02 Score=18.90 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.7
Q ss_pred cCCccEEEec
Q 032854 95 TGINSIFVLE 104 (132)
Q Consensus 95 ~G~~~v~~l~ 104 (132)
.|+ +|.+++
T Consensus 27 ~g~-~vllvD 35 (169)
T cd02037 27 LGY-KVGLLD 35 (169)
T ss_pred cCC-cEEEEe
Confidence 443 444443
No 206
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=25.80 E-value=1.6e+02 Score=23.78 Aligned_cols=39 Identities=33% Similarity=0.558 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCccEEEe-------ccc--hhhhhhcCCCccccC
Q 032854 78 PTCAKRLANYLDEVKEDTGINSIFVL-------ERG--FKGWEASGKPVCRCT 121 (132)
Q Consensus 78 ~~~a~~l~~~L~~~~~~~G~~~v~~l-------~gG--~~~w~~~g~p~~~~~ 121 (132)
..||..|+.. |.++|++ +-+| .|| +..|.+.|.|...+.
T Consensus 435 atcAdilArt----LeRcgVk-~eIlGFTT~awkGg~sre~wlk~Gkp~~pgr 482 (620)
T COG4547 435 ATCADILART----LERCGVK-VEILGFTTKAWKGGQSRETWLKRGKPAFPGR 482 (620)
T ss_pred HHHHHHHHHH----HHHcCCc-eEEeeeeeccccCCccHHHHHhcCCCCCchh
Confidence 4555555554 4569984 3343 344 468999998877654
No 207
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=25.71 E-value=2.6e+02 Score=20.16 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=26.0
Q ss_pred EEEEEcC-CCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccc----hhhhhh
Q 032854 65 TLVFHCA-LSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG----FKGWEA 112 (132)
Q Consensus 65 ~ivv~c~-~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG----~~~w~~ 112 (132)
++|.+|. .|+.--..++..|+..|.+ .| ..|.+++.. +..|.+
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~----~G-~~V~lIDaDpn~pl~~W~~ 49 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAA----RG-ARVALIDADPNQPLAKWAE 49 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHH----CC-CeEEEEeCCCCCcHHHHHH
Confidence 4566664 4443344555666666654 67 488888764 457855
No 208
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.70 E-value=1.3e+02 Score=16.80 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=15.4
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEec
Q 032854 67 VFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (132)
Q Consensus 67 vv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~ 104 (132)
+++++.++.-....+..++..|.+ .|+ ++.+++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----~g~-~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----RGK-RVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----CCC-eEEEEC
Confidence 344443332333444455555544 776 554443
No 209
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=25.57 E-value=2.1e+02 Score=18.95 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=30.3
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
.+++.+...++.|+|+-+. + .+.+++...+...+.. .....=|++|.+|.
T Consensus 17 ~l~~~L~~~g~eV~D~G~~----------~--~dypd~a~~va~~V~~-~e~~~GIliCGtGi 66 (141)
T PRK12613 17 LIKSFLQEEGYDIIDVTDI----------N--SDFIDNTLAVAKAVNE-AEGRLGIMVDAYGA 66 (141)
T ss_pred HHHHHHHHCCCEEEEcCCC----------C--CChHHHHHHHHHHHHc-CCCceEEEEcCCCH
Confidence 4455555557889998651 1 3444555555555533 23456788899985
No 210
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=25.42 E-value=1.4e+02 Score=17.11 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=25.9
Q ss_pred CCeEEEeeCCCCCc-----CCCccCCccccCccchhHHHHHHH
Q 032854 20 PNIAVIDVRDDERS-----YDGHITGSLHYPSDSFTDKIFDLI 57 (132)
Q Consensus 20 ~~~~liD~R~~~e~-----~~~hI~gai~ip~~~~~~~~~~~~ 57 (132)
.++.|||+.. -| ..|.++--+.+|-..+.+.+...+
T Consensus 4 ~eYqLidI~d--GflsLm~e~G~~k~DlklP~~elg~~I~~~f 44 (69)
T cd04468 4 TEYQLIDIDD--GFLSLMDDDGETREDLKLPEGELGKEIREKF 44 (69)
T ss_pred eeEEEEeecC--CeEEEEcCCCCcccCCcCCcHHHHHHHHHHH
Confidence 4688999966 33 358888888899776766666665
No 211
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=25.36 E-value=2.7e+02 Score=21.43 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
++-.+++||++|. .+...|-+|++-. .+.+++-.|+--|.+
T Consensus 100 PeLsvc~F~NSGS-EANDLALRLAR~f------tkhqDvItldHAYHG 140 (452)
T KOG1403|consen 100 PELSVCFFVNSGS-EANDLALRLARNF------TKHQDVITLDHAYHG 140 (452)
T ss_pred CCceEEEEecCCc-hhhHHHHHHHHhh------cccCceEEEechhcc
Confidence 3477999999885 4445555555433 456677777655544
No 212
>PTZ00063 histone deacetylase; Provisional
Probab=25.11 E-value=3.5e+02 Score=21.51 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=12.3
Q ss_pred hhcCCccEEEeccchh
Q 032854 93 EDTGINSIFVLERGFK 108 (132)
Q Consensus 93 ~~~G~~~v~~l~gG~~ 108 (132)
++.+.+-+.++.|||.
T Consensus 286 ~~~~~pil~l~gGGY~ 301 (436)
T PTZ00063 286 RSLNIPLLVLGGGGYT 301 (436)
T ss_pred HhcCCCEEEEeCccCC
Confidence 3478777888899986
No 213
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=25.07 E-value=2.1e+02 Score=22.39 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.-++||++|. .+..+|-+++... .|-++|-.+.+||.+|.
T Consensus 118 ~~v~f~~sGs-eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 118 KRSALFNSGA-EAVENAVKIARSY------TGRQAVVVFDHAYHGRT 157 (443)
T ss_pred CEEEEeCCcH-HHHHHHHHHHHHh------hCCCeEEEECCCcCcCh
Confidence 3577888773 5555555555432 46567888889998885
No 214
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=24.99 E-value=1.7e+02 Score=22.80 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
.-++||++|. .+..+|-+++... .|-++|-.+.+||.+|..
T Consensus 110 ~~v~f~~sGs-eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~ 150 (428)
T PRK12389 110 EKVRFVNSGT-EAVMTTIRVARAY------TGRTKIIKFAGCYHGHSD 150 (428)
T ss_pred cEEEEeCCHH-HHHHHHHHHHHHh------hCCCEEEEECCCcCCChH
Confidence 4577788773 4444554444322 466778888999988754
No 215
>PRK05965 hypothetical protein; Provisional
Probab=24.93 E-value=2.9e+02 Score=21.79 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcC---CccEEEeccchhhhh
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTG---INSIFVLERGFKGWE 111 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G---~~~v~~l~gG~~~w~ 111 (132)
+-.-++||++|. .+..+|-+++..... ..| -++|-.+.+||.+|.
T Consensus 106 ~~~~v~f~~sGS-EAve~AlKlAr~~~~---~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 106 SLNHVYFTLGGS-DAVDSAVRFIRHYWN---ATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred CcCEEEEeCChh-HHHHHHHHHHHHHHH---hcCCCCccEEEEecCCcCccc
Confidence 334688888774 455555444432210 124 456778889998885
No 216
>PRK09273 hypothetical protein; Provisional
Probab=24.90 E-value=1.8e+02 Score=20.68 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=34.7
Q ss_pred cHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 9 s~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
=.+++.+.+...+..|+|+-+..+ ....++..++...+...+.. ...+..|+.|.+|.
T Consensus 18 i~~~L~~~L~~~G~eV~D~G~~~~-------~~~s~dYpd~a~~vA~~V~~-g~~d~GIliCGTGi 75 (211)
T PRK09273 18 IYEALKKVADPKGHEVFNYGMYDE-------EDHQLTYVQNGIMASILLNS-KAVDFVVTGCGTGQ 75 (211)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCC-------CCCCCChHHHHHHHHHHHHc-CCCCEEEEEcCcHH
Confidence 345666666666789999987432 10013444444455555433 34567899999884
No 217
>PF15547 DUF4654: Domain of unknown function (DUF4654)
Probab=24.80 E-value=1.3e+02 Score=19.56 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=17.4
Q ss_pred cEEEeccchhhhhhcCCCccccCCC
Q 032854 99 SIFVLERGFKGWEASGKPVCRCTDV 123 (132)
Q Consensus 99 ~v~~l~gG~~~w~~~g~p~~~~~~~ 123 (132)
...-|.||--++.+.-+|-.+|...
T Consensus 63 q~~~l~gg~laqar~tlppcrg~~a 87 (138)
T PF15547_consen 63 QETPLGGGCLAQARDTLPPCRGTGA 87 (138)
T ss_pred cccCcCCcchhhccCCCCCccCccC
Confidence 4445667777888877887777554
No 218
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=24.78 E-value=3.1e+02 Score=22.93 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=31.1
Q ss_pred CCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEecc
Q 032854 35 DGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLER 105 (132)
Q Consensus 35 ~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~g 105 (132)
.|.|.-.-|-++.+..+-..... ..+..|+|.|.+...-... +..++..|++ .|.. ..+|.|
T Consensus 521 ~gG~~~~~~~~~~~~~~~~~a~~---~sga~i~viCssD~~Y~~~-a~~~~~al~~----ag~~-~v~lAG 582 (619)
T TIGR00642 521 IAGIDTIQVEGGTTAEIVVEAFK---KAGAQVAVLCSSDKVYAQQ-GLEVAKALKA----AGAK-ALYLAG 582 (619)
T ss_pred cCceeeccCCCCCCHHHHHHHHH---hcCCCEEEEeCCCcchHHH-HHHHHHHHHh----CCCC-EEEEeC
Confidence 34444333444433333333332 3567899999877533222 3344444544 8875 334544
No 219
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=24.67 E-value=2.1e+02 Score=22.84 Aligned_cols=32 Identities=16% Similarity=0.501 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCc
Q 032854 81 AKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPV 117 (132)
Q Consensus 81 a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~ 117 (132)
+..++++++. .|. +|-++-..+..|..+...+
T Consensus 246 a~aiAEyfrd----~G~-~VLl~~DslTR~A~A~REi 277 (451)
T PRK05688 246 CTRIAEYFRD----KGK-NVLLLMDSLTRFAQAQREI 277 (451)
T ss_pred HHHHHHHHHH----CCC-CEEEEecchhHHHHHHHHH
Confidence 3456666654 896 8888888899998774443
No 220
>PRK08149 ATP synthase SpaL; Validated
Probab=24.65 E-value=3.6e+02 Score=21.39 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhcCCccEEEeccchhhhhhcCCCcc
Q 032854 80 CAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVC 118 (132)
Q Consensus 80 ~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~g~p~~ 118 (132)
.+..++++++. .|. +|-++-..+..|..+...+.
T Consensus 228 ~a~tiAE~fr~----~G~-~Vll~~DslTr~A~A~rEi~ 261 (428)
T PRK08149 228 VATTVAEYFRD----QGK-RVVLFIDSMTRYARALRDVA 261 (428)
T ss_pred HHHHHHHHHHH----cCC-CEEEEccchHHHHHHHHHhH
Confidence 34456666654 895 88888889999988755543
No 221
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=24.57 E-value=2.5e+02 Score=21.18 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHhcCCCEEEEEcC-CCC
Q 032854 48 SFTDKIFDLIQEVRGKDTLVFHCA-LSQ 74 (132)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~ivv~c~-~g~ 74 (132)
++...+...+..++.+..+++.++ -|+
T Consensus 44 ~~~~~l~~~i~~~~~~d~vlILtDl~GG 71 (322)
T PRK15088 44 TLIEKYNAQLAKLDTSKGVLFLVDTWGG 71 (322)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence 455666677666655555565554 454
No 222
>PRK09004 FMN-binding protein MioC; Provisional
Probab=24.44 E-value=2.1e+02 Score=18.63 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEec
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~ 104 (132)
-.|+|....+ .+...|..++..+ .+.|+ ++.+++
T Consensus 4 i~I~ygS~tG-nae~~A~~l~~~~----~~~g~-~~~~~~ 37 (146)
T PRK09004 4 ITLISGSTLG-GAEYVADHLAEKL----EEAGF-STETLH 37 (146)
T ss_pred EEEEEEcCch-HHHHHHHHHHHHH----HHcCC-ceEEec
Confidence 3456664332 4555555555555 44887 444443
No 223
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=24.42 E-value=1.9e+02 Score=19.39 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=10.4
Q ss_pred CCCEEEEEcCCCCCCc
Q 032854 62 GKDTLVFHCALSQVRG 77 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~ 77 (132)
...||+|+|..|.-++
T Consensus 90 ~n~PvLiHC~~G~~rT 105 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRT 105 (164)
T ss_dssp GG-SEEEE-SSSSSHH
T ss_pred CCCCEEEEeCCCCcch
Confidence 4679999998886443
No 224
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=24.15 E-value=1.8e+02 Score=22.81 Aligned_cols=40 Identities=18% Similarity=0.081 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.-++||++|. .+..+|-+++... .|-+.|-.+.+||.+|.
T Consensus 102 ~~v~f~~sGs-EAve~AlklAr~~------tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 102 PKVSFGLSGS-DANDGAIKFARAY------TKRRKILSYLRSYYGST 141 (443)
T ss_pred CEEEEcCCHH-HHHHHHHHHHHHh------cCCCeEEEEeCCcCCcC
Confidence 3588888774 4555554444322 47677888888888774
No 225
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=24.09 E-value=2.5e+02 Score=19.42 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=35.8
Q ss_pred CeEEEeeCCCCCcCC-----CccCC-ccccCccchhHHHHHHHHHhc-------C----CCEEEEEcCCCCCCcHHHHHH
Q 032854 21 NIAVIDVRDDERSYD-----GHITG-SLHYPSDSFTDKIFDLIQEVR-------G----KDTLVFHCALSQVRGPTCAKR 83 (132)
Q Consensus 21 ~~~liD~R~~~e~~~-----~hI~g-ai~ip~~~~~~~~~~~~~~~~-------~----~~~ivv~c~~g~~~~~~~a~~ 83 (132)
.++|+|..+.++... ...+. .+.+....|...+........ . ..|+++.|++ .+......
T Consensus 34 ~ivV~Da~t~~DL~~ia~a~~~~~~~~l~vGsagla~aL~~~~~~~~~~~~~~~~~~~~~~~~Lvv~GS---~s~~T~~Q 110 (223)
T PF07005_consen 34 RIVVFDAETDEDLDAIAEALLELGRRVLWVGSAGLAAALARALASPPEQPSQPPLPSPSRGPVLVVVGS---VSPVTRRQ 110 (223)
T ss_dssp CEEEE-BSSCHHHHHHHHHCTT-S---EEEESCHHHHHHHHHHHTT--C---CCCCS--SSEEEEEE------SHHHHHH
T ss_pred cEEEEecCCHHHHHHHHHHHHhCCCceEEecchHHHHHHHhhhccCcccccccccccCCCCCeEEEEcC---CCHHHHHH
Confidence 799999999876531 11111 144444445555544433211 1 6789999964 45555544
Q ss_pred HHHHHHHHhhhcCCccEE
Q 032854 84 LANYLDEVKEDTGINSIF 101 (132)
Q Consensus 84 l~~~L~~~~~~~G~~~v~ 101 (132)
+... +..|+..+.
T Consensus 111 i~~l-----~~~~~~~i~ 123 (223)
T PF07005_consen 111 IAYL-----EQAGVPVIE 123 (223)
T ss_dssp HHHH------CCTS-EEE
T ss_pred HHHH-----HHCCCcEEE
Confidence 4432 336775443
No 226
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=24.03 E-value=2.1e+02 Score=18.98 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=22.1
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 68 FHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 68 v~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
++|...+..-....+++...- .++|-.|+.++-|+-.+
T Consensus 41 FVctaagaMDLEnQ~rvk~~a----Ek~g~enlvVvlG~aea 78 (150)
T PF04723_consen 41 FVCTAAGAMDLENQQRVKDLA----EKYGAENLVVVLGAAEA 78 (150)
T ss_pred EEecccccccHHHHHHHHHHH----HhcCCccEEEEecCCCh
Confidence 456544333333444444433 45898899988887654
No 227
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=23.85 E-value=1.7e+02 Score=21.49 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=46.7
Q ss_pred CeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcHH-HHHHHHHHHHH---------
Q 032854 21 NIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGPT-CAKRLANYLDE--------- 90 (132)
Q Consensus 21 ~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~~-~a~~l~~~L~~--------- 90 (132)
+.+|+|+------....||||. +.+..+. ..+.++++..+.+. ++.. .+.+|...+.-
T Consensus 9 ~~~l~DlDGvl~~G~~~ipga~--------e~l~~L~---~~g~~~iflTNn~~-~s~~~~~~~L~~~~~~~~~~~~i~T 76 (269)
T COG0647 9 DGFLFDLDGVLYRGNEAIPGAA--------EALKRLK---AAGKPVIFLTNNST-RSREVVAARLSSLGGVDVTPDDIVT 76 (269)
T ss_pred CEEEEcCcCceEeCCccCchHH--------HHHHHHH---HcCCeEEEEeCCCC-CCHHHHHHHHHhhcCCCCCHHHeec
Confidence 5678886432222234566663 2344443 35678888888664 3333 44333331100
Q ss_pred --------HhhhcCCccEEEecc-ch-hhhhhcCCCccccCC
Q 032854 91 --------VKEDTGINSIFVLER-GF-KGWEASGKPVCRCTD 122 (132)
Q Consensus 91 --------~~~~~G~~~v~~l~g-G~-~~w~~~g~p~~~~~~ 122 (132)
..+..+..+|+++-. |. ..+...|+.+.....
T Consensus 77 S~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~~~~ 118 (269)
T COG0647 77 SGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVDEEE 118 (269)
T ss_pred HHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEeccCC
Confidence 012234468888854 33 577777777765433
No 228
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=23.67 E-value=1.5e+02 Score=17.98 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=27.9
Q ss_pred cHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHH
Q 032854 9 SGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLI 57 (132)
Q Consensus 9 s~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~ 57 (132)
+++.+..++..++..+|+.|.+.. ..++ |-..|-...+..-+....
T Consensus 25 t~sAVr~Mi~~gKLP~i~~~dP~~-p~~r--gE~wI~~~ewn~~~~~a~ 70 (87)
T PF10743_consen 25 TPSAVRKMIKAGKLPVIEMRDPEK-PNGR--GEWWIYIPEWNRGVREAY 70 (87)
T ss_pred CHHHHHHHHHcCCCCeEeccCCCC-CCCc--eeEEEeHHHHHHHHHHHH
Confidence 455556666677888999997655 3344 666665555554444443
No 229
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=23.60 E-value=1.8e+02 Score=22.87 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEecc
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLER 105 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~g 105 (132)
..|+++...+ .+.-.|.| |++..++.|+ ||.+++.
T Consensus 87 ~dVvIIGGG~--~GsS~AfW----LKer~rd~gl-~VvVVEr 121 (509)
T KOG2853|consen 87 CDVVIIGGGG--SGSSTAFW----LKERARDEGL-NVVVVER 121 (509)
T ss_pred cCEEEECCCc--cchhhHHH----HHHHhhcCCc-eEEEEec
Confidence 4467777644 33334444 4444455786 7777654
No 230
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=23.60 E-value=1.9e+02 Score=23.95 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=33.4
Q ss_pred cCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchh---------hhhhcCCCcccc
Q 032854 61 RGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK---------GWEASGKPVCRC 120 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~---------~w~~~g~p~~~~ 120 (132)
.....-|+||.+ -..+..++.+|.. .|+ ++..+.+|+. .|.....++.-.
T Consensus 228 ~~~~~GIIYc~s-----Rk~~E~ia~~L~~----~g~-~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVA 286 (590)
T COG0514 228 QLSKSGIIYCLT-----RKKVEELAEWLRK----NGI-SAGAYHAGLSNEERERVQQAFLNDEIKVMVA 286 (590)
T ss_pred ccCCCeEEEEee-----HHhHHHHHHHHHH----CCC-ceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 345668999964 2335666777766 787 7788888874 566655555433
No 231
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=23.46 E-value=1e+02 Score=23.91 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=25.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
-++||++|. .+..+|-+++... .|-++|-.+++||.+|..
T Consensus 103 ~~~f~~sGs-eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~ 142 (421)
T PRK06777 103 KTAFFTTGA-EAVENAVKIARAY------TGRPGVIAFGGAFHGRTL 142 (421)
T ss_pred eEEEeCCcH-HHHHHHHHHHHHh------hCCCeEEEEcCCcCCccH
Confidence 467777763 4555554544322 466678888999988853
No 232
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=23.40 E-value=2.2e+02 Score=18.71 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=31.0
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
.+.+.++..++.|+|+-+... . ..+..++...+...+.. .....-|++|.+|.
T Consensus 16 ~i~~~L~~~g~eV~D~G~~~~-------~--~~dy~~~a~~va~~V~~-~~~d~GIliCgtGi 68 (140)
T PF02502_consen 16 AIKEYLEEKGYEVIDFGTYSE-------D--SVDYPDFAEKVAEAVAS-GEADRGILICGTGI 68 (140)
T ss_dssp HHHHHHHHTTEEEEEESESST-------S--T--HHHHHHHHHHHHHT-TSSSEEEEEESSSH
T ss_pred HHHHHHHHCCCEEEEeCCCCC-------C--CCCHHHHHHHHHHHHHc-ccCCeEEEEcCCCh
Confidence 344555555789999877543 1 33334455555555543 23457899999884
No 233
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=23.24 E-value=75 Score=22.13 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=12.9
Q ss_pred CCCEEEEEcCCCCCCcH
Q 032854 62 GKDTLVFHCALSQVRGP 78 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~ 78 (132)
...||+|+|..|..|+.
T Consensus 165 ~~~pivVHC~~G~gRsg 181 (231)
T cd00047 165 GSGPIVVHCSAGVGRTG 181 (231)
T ss_pred CCCCeEEECCCCCCccc
Confidence 46799999988865544
No 234
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.14 E-value=2.1e+02 Score=22.49 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEec
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~ 104 (132)
..++..++|+ .+.+. .-...++.+|.++|+.+|.++.
T Consensus 73 ~~vlmt~TgG--pCRfg-nYi~~~rkaLk~aG~~~V~vis 109 (420)
T COG3581 73 DAVLMTQTGG--PCRFG-NYIELLRKALKDAGFRDVPVIS 109 (420)
T ss_pred cEEEEecCCC--Ccchh-hHHHHHHHHHHHcCCCCCcEEE
Confidence 3455555554 12222 2224567778889999888763
No 235
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=23.10 E-value=4.4e+02 Score=22.13 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchh
Q 032854 54 FDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (132)
Q Consensus 54 ~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~ 108 (132)
..+......+..++|+|.+ ...+..++..|.+ .|+ ++..+.|++.
T Consensus 433 ~eI~~~~~~g~~vLIf~~t-----k~~ae~L~~~L~~----~gi-~~~~lh~~~~ 477 (655)
T TIGR00631 433 SEIRQRVARNERVLVTTLT-----KKMAEDLTDYLKE----LGI-KVRYLHSEID 477 (655)
T ss_pred HHHHHHHcCCCEEEEEECC-----HHHHHHHHHHHhh----hcc-ceeeeeCCCC
Confidence 3333334567789999964 3445666666654 787 6666766644
No 236
>PRK06062 hypothetical protein; Provisional
Probab=23.09 E-value=1.9e+02 Score=22.77 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
.-|+||++|. .+..+|-+++... .|-++|-.+.+||.+|.
T Consensus 113 ~~v~f~~SGs-EAve~AlklAr~~------tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 113 SKVFFTNGGA-DANEHAVRMARLH------TGRPKVLSAYRSYHGGT 152 (451)
T ss_pred CEEEEcCChH-HHHHHHHHHHHHh------hCCceEEEEeCCCCCCC
Confidence 4578888773 4444554444322 46667888889998885
No 237
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=22.95 E-value=3.1e+02 Score=20.02 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhh
Q 032854 53 IFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGW 110 (132)
Q Consensus 53 ~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w 110 (132)
+......+...+.|++|. .| .+-..|..+...| .++|. ++..+.+....|
T Consensus 120 l~~av~~L~~A~rI~~~G-~g--~S~~vA~~~~~~l----~~ig~-~~~~~~d~~~~~ 169 (281)
T COG1737 120 LERAVELLAKARRIYFFG-LG--SSGLVASDLAYKL----MRIGL-NVVALSDTHGQL 169 (281)
T ss_pred HHHHHHHHHcCCeEEEEE-ec--hhHHHHHHHHHHH----HHcCC-ceeEecchHHHH
Confidence 344444455777888887 34 4555565555555 45997 666666554433
No 238
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.93 E-value=3.2e+02 Score=21.52 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchh
Q 032854 62 GKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (132)
Q Consensus 62 ~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~ 108 (132)
++...+|||.+ ...+..++..|.+ .|+ .+..+.||+.
T Consensus 225 ~~~~~IIF~~s-----~~~~e~la~~L~~----~g~-~~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPS-----RKKSEQVTASLQN----LGI-AAGAYHAGLE 261 (470)
T ss_pred CCCceEEEECc-----HHHHHHHHHHHHh----cCC-CeeEeeCCCC
Confidence 45667899974 2335555666654 887 6777778864
No 239
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=22.92 E-value=1.1e+02 Score=23.83 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=25.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
-++||.+|. .+..+|-+++... .|-++|-.+.|||.+|.
T Consensus 103 ~~~f~~sGs-eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t 141 (421)
T PRK09792 103 KTAFFTTGA-EAVENAVKIARAH------TGRPGVIAFSGGFHGRT 141 (421)
T ss_pred eEEEeCChH-HHHHHHHHHHHHh------cCCCeEEEECCCcCCcc
Confidence 467777663 4555554444322 46667888899998885
No 240
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=22.82 E-value=2.4e+02 Score=18.68 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=31.2
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
.+++.++..++-|+|.-+..+ + + ++..++...+...+.. ...+.-|++|.+|.
T Consensus 16 ~l~~~L~~~g~eV~D~G~~~~-~------~--~dYpd~a~~va~~V~~-~~~~~GIliCGtGi 68 (143)
T TIGR01120 16 EIKAFLVERGVKVIDKGTWSS-E------R--TDYPHYAKQVALAVAG-GEVDGGILICGTGI 68 (143)
T ss_pred HHHHHHHHCCCEEEEeCCCCC-C------C--CCHHHHHHHHHHHHHC-CCCceEEEEcCCcH
Confidence 344555555788999876431 1 2 3444455555555433 23466788999985
No 241
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=22.74 E-value=2.8e+02 Score=19.54 Aligned_cols=52 Identities=12% Similarity=0.219 Sum_probs=27.7
Q ss_pred ccCCccccCccchhHHHHHHHHHhc--CCCEEEEEcCCCCCCcHHHHHHHHHHHHH
Q 032854 37 HITGSLHYPSDSFTDKIFDLIQEVR--GKDTLVFHCALSQVRGPTCAKRLANYLDE 90 (132)
Q Consensus 37 hI~gai~ip~~~~~~~~~~~~~~~~--~~~~ivv~c~~g~~~~~~~a~~l~~~L~~ 90 (132)
+.||+++++...+...+..+...+. .-+.||++-..|+ .......++..|++
T Consensus 72 ~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgG--N~~~l~~~~~~l~~ 125 (237)
T PF02633_consen 72 GFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGHGG--NIAALEAAARELRQ 125 (237)
T ss_dssp TSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTT--HHHHHHHHHHHHHH
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHh--HHHHHHHHHHHHHh
Confidence 4789999998887776666655542 3456666555443 22233444455543
No 242
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=22.72 E-value=1.4e+02 Score=21.06 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=30.1
Q ss_pred HHHHhhhCCCCeEEEeeCCCCCcC------CCccCCccc---cCccc----hhHHHHHHHHHhcCCCEEEEEcCCC
Q 032854 11 SQLLSLKRRPNIAVIDVRDDERSY------DGHITGSLH---YPSDS----FTDKIFDLIQEVRGKDTLVFHCALS 73 (132)
Q Consensus 11 ~~~~~~~~~~~~~liD~R~~~e~~------~~hI~gai~---ip~~~----~~~~~~~~~~~~~~~~~ivv~c~~g 73 (132)
.++.+.+...+..+||.|+...-. +..+|.+.+ ++-.. +...+..+.....+....|.+|...
T Consensus 109 ~~vl~~l~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~ 184 (213)
T PF04748_consen 109 RWVLEVLKERGLFFVDSRTTPRSVAPQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPR 184 (213)
T ss_dssp HHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-S
T ss_pred HHHHHHHHHcCCEEEeCCCCcccHHHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCC
Confidence 345555556689999999875532 244554432 22211 3335555555556677777778643
No 243
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=22.65 E-value=2.6e+02 Score=19.14 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
.+.+.+...++.|+|.-+... + + .+.+++...+...+.. .....-|++|.+|.
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~-~------~--~dYpd~a~~va~~V~~-g~~~~GIliCGTGi 69 (171)
T TIGR01119 17 EVSEFLKSKGYEVLDVGTYDF-T------R--THYPIFGKKVGEAVVS-GEADLGVCICGTGV 69 (171)
T ss_pred HHHHHHHHCCCEEEEeCCCCC-C------C--CChHHHHHHHHHHHHc-CCCCEEEEEcCCcH
Confidence 445555556788999886431 1 2 2334455555555533 23457788999985
No 244
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=22.59 E-value=81 Score=18.24 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=28.1
Q ss_pred cccccHHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCC
Q 032854 5 ISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALS 73 (132)
Q Consensus 5 ~~~is~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g 73 (132)
...++++.+..++. +.+ +|...+|.. ...+ +.+.+....+++..+.-+|+|....
T Consensus 5 ~~~L~~eTL~nLIe--efv---~ReGTdyG~------~E~s---L~~kv~qv~~qL~~G~avI~~se~~ 59 (70)
T PF06794_consen 5 YQQLPPETLNNLIE--EFV---LREGTDYGE------QELS---LEEKVEQVKQQLKSGEAVIVFSELH 59 (70)
T ss_dssp GGGS-HHHHHHHHH--HHH---H---------------------HHHHHHHHHHHHHTTSEEEEE-TTT
T ss_pred hHHCCHHHHHHHHH--HHH---HccCcccCc------cccc---HHHHHHHHHHHHHcCCEEEEECCcc
Confidence 34577777777765 222 555555432 2222 5667777777778888899988643
No 245
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=22.57 E-value=1.9e+02 Score=20.36 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
.+.++|.+..-||+.+. ..|.+ .|| +|.-+
T Consensus 3 ~~avVCasN~NRSMEAH----~~L~~----~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAH----NVLKK----AGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHH----HHHHH----TT--EEEEE
T ss_pred eEEEEccCCCCcCHHHH----HHHHH----CCC-ceEee
Confidence 47788998876787776 34433 899 66655
No 246
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.40 E-value=2.7e+02 Score=19.16 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
..+|++.|-.|. ........++..|+. .|| +|.+|
T Consensus 84 ~~~vv~~t~~gd-~H~lG~~~v~~~l~~----~G~-~vi~L 118 (197)
T TIGR02370 84 LGKVVCGVAEGD-VHDIGKNIVVTMLRA----NGF-DVIDL 118 (197)
T ss_pred CCeEEEEeCCCc-hhHHHHHHHHHHHHh----CCc-EEEEC
Confidence 357888888776 344555666666655 999 66666
No 247
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=22.35 E-value=2.1e+02 Score=22.34 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
.+++++++|. .+..+|-+++... .|-++|-.+.+||.+|..
T Consensus 103 ~~~f~~~sGs-EA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~ 143 (442)
T TIGR00709 103 KLQFPGPSGA-DAVEAAIKLAKTY------TGRTNVISFSGGFHGMTI 143 (442)
T ss_pred cEEEeCCCHH-HHHHHHHHHHHHh------cCCCeEEEEcCCcCCchH
Confidence 5667777663 4445554444322 466678888999988753
No 248
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=22.27 E-value=4.8e+02 Score=22.02 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHh-cCCCEEEEEcCCCCCCcHHHHHHHHHHH
Q 032854 10 GSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEV-RGKDTLVFHCALSQVRGPTCAKRLANYL 88 (132)
Q Consensus 10 ~~~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~-~~~~~ivv~c~~g~~~~~~~a~~l~~~L 88 (132)
.+++.+.+.- ++++|+...+.....- +.-+..+...=...+...+... ....+++|+|++ ...+..++..|
T Consensus 422 ~~El~~~y~l-~vv~IPt~kp~~r~~~--~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t-----~~~se~L~~~L 493 (656)
T PRK12898 422 AGELWSVYGL-PVVRIPTNRPSQRRHL--PDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS-----VAASERLSALL 493 (656)
T ss_pred HHHHHHHHCC-CeEEeCCCCCccceec--CCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc-----HHHHHHHHHHH
Confidence 3566666654 5778888765532211 1222222111001222233222 346789999964 34455666666
Q ss_pred HHHhhhcCCccEEEeccchh
Q 032854 89 DEVKEDTGINSIFVLERGFK 108 (132)
Q Consensus 89 ~~~~~~~G~~~v~~l~gG~~ 108 (132)
.+ .|+ .+..|.|...
T Consensus 494 ~~----~gi-~~~~Lhg~~~ 508 (656)
T PRK12898 494 RE----AGL-PHQVLNAKQD 508 (656)
T ss_pred HH----CCC-CEEEeeCCcH
Confidence 55 898 6668887643
No 249
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=22.18 E-value=2.4e+02 Score=22.23 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
.-++||++|. .+..+|-+++... .|-.++-.+.+||.+|..
T Consensus 131 ~~v~f~~sGs-eAve~AlklAr~~------tgr~~ii~~~~~yHG~t~ 171 (459)
T PRK06082 131 NRVLFAPGGT-SAIGMALKLARHI------TGNFKVVSLWDSFHGASL 171 (459)
T ss_pred CEEEECCCcH-HHHHHHHHHHHHh------cCCCEEEEEeCCCcCccH
Confidence 4678888774 4444554444322 466678888898888753
No 250
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=22.01 E-value=2.5e+02 Score=20.84 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhhcCCccEEEeccchhh
Q 032854 83 RLANYLDEVKEDTGINSIFVLERGFKG 109 (132)
Q Consensus 83 ~l~~~L~~~~~~~G~~~v~~l~gG~~~ 109 (132)
.+...+.....+.+.+-+.+++|||.-
T Consensus 270 ~~~~~~~~~a~~~~~~~v~vleGGY~~ 296 (311)
T PF00850_consen 270 ELTRRLKSLAKRHCIPVVSVLEGGYNP 296 (311)
T ss_dssp HHHHHHHTTHSHHSGCEEEEE-S-SSH
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCCh
Confidence 444444432233333567899999863
No 251
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=22.00 E-value=1.7e+02 Score=20.62 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHHHHHhhhcCCc
Q 032854 77 GPTCAKRLANYLDEVKEDTGIN 98 (132)
Q Consensus 77 ~~~~a~~l~~~L~~~~~~~G~~ 98 (132)
+...++..+....+.+.++||.
T Consensus 86 se~~ar~aark~aRilqkLgf~ 107 (200)
T KOG3302|consen 86 SEDSARLAARKYARILQKLGFP 107 (200)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 3334444344444455669984
No 252
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=21.72 E-value=1.4e+02 Score=19.83 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCccccCccchhHHHHHHHHHhc--CCCEEEEEcCCCC
Q 032854 39 TGSLHYPSDSFTDKIFDLIQEVR--GKDTLVFHCALSQ 74 (132)
Q Consensus 39 ~gai~ip~~~~~~~~~~~~~~~~--~~~~ivv~c~~g~ 74 (132)
+...|..++.|...+.+.+..+. .+.-+++|..+|.
T Consensus 4 ~~gLH~~p~~L~~~lq~~id~~~~~~d~Ill~YG~Cg~ 41 (166)
T PF07796_consen 4 DSGLHNDPDKLRKELQEEIDKASKDYDGILLFYGLCGN 41 (166)
T ss_pred ChhhcCCHHHHHHHHHHHHHHhhccCCeEEEEEeCCCC
Confidence 44556666777777777776665 4556667877664
No 253
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=21.42 E-value=39 Score=22.19 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=8.2
Q ss_pred CCccCCcccc
Q 032854 35 DGHITGSLHY 44 (132)
Q Consensus 35 ~~hI~gai~i 44 (132)
.-||||++|+
T Consensus 124 ~~H~~~~~~~ 133 (135)
T TIGR03096 124 NIHLPGSLNV 133 (135)
T ss_pred hhcCCCcccc
Confidence 4799999886
No 254
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=21.40 E-value=2.7e+02 Score=20.05 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
.|+++ +.|+.--...+..++..|.+ .|+ +|-+++..
T Consensus 3 ~i~~~-gKGGVGKTT~a~nLA~~La~----~G~-rVLliD~D 38 (279)
T PRK13230 3 KFCFY-GKGGIGKSTTVCNIAAALAE----SGK-KVLVVGCD 38 (279)
T ss_pred EEEEE-CCCCCcHHHHHHHHHHHHHh----CCC-EEEEEeeC
Confidence 34454 66665544445555555544 886 67666543
No 255
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=21.39 E-value=2.4e+02 Score=21.93 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=25.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhh
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWE 111 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~ 111 (132)
-++||++|. .+..+|-+++... .|-.+|-.+.+||.+|.
T Consensus 103 ~v~f~~SGs-eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 103 KTIFVTTGA-EAVENAVKIARAA------TGRSAVIAFGGGFHGRT 141 (425)
T ss_pred EEEECCchH-HHHHHHHHHHHHh------hCCCeEEEECCCcCCcc
Confidence 578888774 4444554444322 46667888889998885
No 256
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=21.34 E-value=2.8e+02 Score=18.99 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=31.5
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
.+++.+...++.|+|.-+... + + .+.+++...+...+.. ...+.-|++|.+|.
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~-~------~--~dYpd~a~~va~~V~~-g~~d~GIliCGTGi 69 (171)
T PRK12615 17 AVSDFLKSKGYDVIDCGTYDH-T------R--THYPIFGKKVGEAVVN-GQADLGVCICGTGV 69 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCC-C------C--CChHHHHHHHHHHHHc-CCCCEEEEEcCCcH
Confidence 455556666789999876432 1 2 2334455555555433 23467888999985
No 257
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=21.28 E-value=1.7e+02 Score=20.05 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=15.5
Q ss_pred cCCCEEEEEcCCCCCCcHHH
Q 032854 61 RGKDTLVFHCALSQVRGPTC 80 (132)
Q Consensus 61 ~~~~~ivv~c~~g~~~~~~~ 80 (132)
.-++.++|+|..|-.||...
T Consensus 107 sLGktvYVHCKAGRtRSaTv 126 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATV 126 (183)
T ss_pred ccCCeEEEEecCCCccchhh
Confidence 56789999999887776544
No 258
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=21.14 E-value=2.5e+02 Score=19.81 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=19.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
|.|+ +.|+.-....+..++..|.+ .|+ +|.+++..
T Consensus 4 iav~-~KGGvGKTT~~~nLA~~La~----~G~-kVlliD~D 38 (270)
T cd02040 4 IAIY-GKGGIGKSTTTQNLSAALAE----MGK-KVMIVGCD 38 (270)
T ss_pred EEEE-eCCcCCHHHHHHHHHHHHHh----CCC-eEEEEEcC
Confidence 4454 56664444444455555544 775 67666654
No 259
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=21.10 E-value=3e+02 Score=20.86 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
..|++||+.|+.--...+-.++.+|.+ .| .++-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~----~g-~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE----SG-KKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH----cC-CcEEEE
Confidence 468999988875543333334555544 78 456655
No 260
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=21.07 E-value=4.1e+02 Score=22.79 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=26.1
Q ss_pred hcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccc
Q 032854 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERG 106 (132)
Q Consensus 60 ~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG 106 (132)
...+.|++|+|.+ ...+..++..|.+ .|+ ...+|.+.
T Consensus 402 ~~~grpvLV~t~s-----i~~se~ls~~L~~----~gi-~~~~Lna~ 438 (745)
T TIGR00963 402 HAKGQPVLVGTTS-----VEKSELLSNLLKE----RGI-PHNVLNAK 438 (745)
T ss_pred HhcCCCEEEEeCc-----HHHHHHHHHHHHH----cCC-CeEEeeCC
Confidence 4678999999964 3445666676755 898 45577776
No 261
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=21.01 E-value=2.6e+02 Score=18.47 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=30.3
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCC
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQ 74 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~ 74 (132)
.+++.+...++.|+|+-+ .+ + .+.+++...+...+.. .....=|++|.+|.
T Consensus 17 ~i~~~L~~~G~eV~D~G~-~~--------~--~dYpd~a~~va~~V~~-~e~~~GIliCGtGi 67 (141)
T TIGR01118 17 VIKNFLVDNGFEVIDVTE-GD--------G--QDFVDVTLAVASEVQK-DEQNLGIVIDAYGA 67 (141)
T ss_pred HHHHHHHHCCCEEEEcCC-CC--------C--CCcHHHHHHHHHHHHc-CCCceEEEEcCCCH
Confidence 345555556788999865 11 2 3444455555555443 23456788899985
No 262
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=20.97 E-value=1.8e+02 Score=22.93 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
.+++++++|. .+..+|-+++... .|-++|-.+.+||.+|...
T Consensus 122 ~~~f~~~SGs-EAve~AlklAr~~------tgr~~Ii~~~~~yHG~t~~ 163 (459)
T PRK06931 122 CLQFTGPSGA-DAVEAAIKLAKTY------TGRSNVISFSGGYHGMTHG 163 (459)
T ss_pred eEEEeCCCcH-HHHHHHHHHHHHh------cCCCeEEEECCCcCCccHH
Confidence 3455556663 4555554444322 5767888889999888543
No 263
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=20.91 E-value=1.8e+02 Score=19.32 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=15.3
Q ss_pred HHHHHHHhc-CCCEEEEEcCCCCCCcHHHH
Q 032854 53 IFDLIQEVR-GKDTLVFHCALSQVRGPTCA 81 (132)
Q Consensus 53 ~~~~~~~~~-~~~~ivv~c~~g~~~~~~~a 81 (132)
+..++...+ .++.|+.||.+|+.....+.
T Consensus 92 v~tFL~~~~~~gK~v~~F~T~ggs~~~~~~ 121 (156)
T PF12682_consen 92 VRTFLEQYDFSGKTVIPFCTSGGSGFGNSL 121 (156)
T ss_dssp HHHHHHCTTTTTSEEEEEEE-SS--CHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEeeCCCChhHHH
Confidence 444444433 56789999987753333333
No 264
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.88 E-value=3.5e+02 Score=19.92 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=47.3
Q ss_pred cccHHHHH-hhhCC--CCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHH-----hcCCCEEEEEcCCCCCCcH
Q 032854 7 YISGSQLL-SLKRR--PNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQE-----VRGKDTLVFHCALSQVRGP 78 (132)
Q Consensus 7 ~is~~~~~-~~~~~--~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~-----~~~~~~ivv~c~~g~~~~~ 78 (132)
..|+-+.. +..+. .-.+++|++... .+++.++-.+.+-+.-.. +.+++.+|+.|..|.-...
T Consensus 144 p~s~yd~Ik~N~~~GLHTl~lLDi~~~~----------r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs~~~~ 213 (260)
T COG1798 144 PTSPYDVIKENLERGLHTLVLLDIKEDE----------RYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEV 213 (260)
T ss_pred CCcHHHHHHHhhhcCccceEEEEecccc----------cccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCCCCce
Confidence 34554433 34442 257899999976 455544433322222222 3578889999987753333
Q ss_pred HHHHHHHHHHHHHhhhcCCc-cEEEeccchh
Q 032854 79 TCAKRLANYLDEVKEDTGIN-SIFVLERGFK 108 (132)
Q Consensus 79 ~~a~~l~~~L~~~~~~~G~~-~v~~l~gG~~ 108 (132)
..+-.+.. |.. .+.|-+ ++.++.|...
T Consensus 214 v~ag~l~~-l~~--~Dfg~Plh~lvvp~~Lh 241 (260)
T COG1798 214 VRAGTLEE-LAD--EDFGEPLHSLVVPGRLH 241 (260)
T ss_pred EEechHHH-Hhh--cccCCCceEEEEecccc
Confidence 33323322 322 345644 6677777643
No 265
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=20.85 E-value=3.8e+02 Score=23.23 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=27.5
Q ss_pred hcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchh
Q 032854 60 VRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFK 108 (132)
Q Consensus 60 ~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~ 108 (132)
...+.|++|+|.+ ...+..++..|.+ .|+ ...+|.+...
T Consensus 437 ~~~g~pvLI~t~s-----i~~se~ls~~L~~----~gi-~~~~Lna~~~ 475 (796)
T PRK12906 437 HAKGQPVLVGTVA-----IESSERLSHLLDE----AGI-PHAVLNAKNH 475 (796)
T ss_pred HhCCCCEEEEeCc-----HHHHHHHHHHHHH----CCC-CeeEecCCcH
Confidence 3578999999964 3445667777755 887 5568887754
No 266
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.76 E-value=3.1e+02 Score=19.24 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEe
Q 032854 63 KDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVL 103 (132)
Q Consensus 63 ~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l 103 (132)
..+|++.|-.|. ........++..|+. .|| +|.+|
T Consensus 88 ~~~vvl~t~~gd-~HdiG~~iv~~~l~~----~G~-~Vi~L 122 (213)
T cd02069 88 KGKIVLATVKGD-VHDIGKNLVGVILSN----NGY-EVIDL 122 (213)
T ss_pred CCeEEEEeCCCc-hhHHHHHHHHHHHHh----CCC-EEEEC
Confidence 357889898776 444555666666655 999 66666
No 267
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=20.31 E-value=2.8e+02 Score=18.51 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhhc
Q 032854 52 KIFDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEAS 113 (132)
Q Consensus 52 ~~~~~~~~~~~~~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~~ 113 (132)
.-..+...++ +..+|+.+..|..-+ ...++..|.+ ....| .++..+-||-.++..+
T Consensus 55 E~~~il~~~~-~~~~i~LDe~Gk~~s---S~~fA~~l~~-~~~~g-~~i~FvIGGa~G~~~~ 110 (153)
T TIGR00246 55 EGDRILAAIG-KAHVVTLDIPGKPWT---TPQLADTLEK-WKTDG-RDVTLLIGGPEGLSPT 110 (153)
T ss_pred HHHHHHHhCC-CCeEEEEcCCCCcCC---HHHHHHHHHH-HhccC-CeEEEEEcCCCcCCHH
Confidence 4445555555 467787787775332 3344455543 12356 5799999997766443
No 268
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.28 E-value=2.1e+02 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=19.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEec
Q 032854 66 LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLE 104 (132)
Q Consensus 66 ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~ 104 (132)
|++.|..|...+... .++++|.. .||..+-++.
T Consensus 269 V~Ilcgpgnnggdg~--v~gRHL~~----~G~~~vi~~p 301 (453)
T KOG2585|consen 269 VAILCGPGNNGGDGL--VCGRHLAQ----HGYTPVIYYP 301 (453)
T ss_pred EEEEeCCCCccchhH--HHHHHHHH----cCceeEEEee
Confidence 888887665333322 24556644 9997665554
No 269
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.19 E-value=2.2e+02 Score=17.79 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=16.5
Q ss_pred CEEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCC
Q 032854 64 DTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGI 97 (132)
Q Consensus 64 ~~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~ 97 (132)
..|.++|..|-+.|..+ ..+++...+.|.
T Consensus 2 k~IlLvC~aGmSTSlLV-----~Km~~aA~~kg~ 30 (102)
T COG1440 2 KKILLVCAAGMSTSLLV-----TKMKKAAESKGK 30 (102)
T ss_pred ceEEEEecCCCcHHHHH-----HHHHHHHHhCCC
Confidence 46889999886433333 344444444564
No 270
>PRK07678 aminotransferase; Validated
Probab=20.18 E-value=3.3e+02 Score=21.41 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhhcCCccEEEeccchhhhhh
Q 032854 65 TLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 65 ~ivv~c~~g~~~~~~~a~~l~~~L~~~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
.-++||++|. .+..+|-+++.......-..|-++|-.+.+||.+|..
T Consensus 106 ~~v~f~~sGs-eA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~ 152 (451)
T PRK07678 106 YVIFFSNSGS-EANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSM 152 (451)
T ss_pred CEEEEeCCcH-HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccH
Confidence 3578898874 4555554555432110000134567788899988854
No 271
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=3.5e+02 Score=20.73 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=38.2
Q ss_pred HHHhhhCCCCeEEEeeCCCCCcCCCccCCccccCccchhHHHHHHHHHhcCCCEEEEEcCCCCCCcH-HHHHHHHHHHHH
Q 032854 12 QLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKIFDLIQEVRGKDTLVFHCALSQVRGP-TCAKRLANYLDE 90 (132)
Q Consensus 12 ~~~~~~~~~~~~liD~R~~~e~~~~hI~gai~ip~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~~~~-~~a~~l~~~L~~ 90 (132)
++..+.+..+..|.|+|.+..+..--.-|. .. +.+.++|+...++..-+. ..+. .|.+
T Consensus 113 ~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~-----------~~------k~~a~~V~vvGTd~~vGKrTTa~----~L~~ 171 (339)
T COG3367 113 EFVKLAERTGVRLDDVRKPPLDLEYLCTGM-----------AR------KVDAKVVLVVGTDCAVGKRTTAL----ELRE 171 (339)
T ss_pred HHHHHHHHcCCeeEeeccCccchhhhccCc-----------cc------ccCCcEEEEeccccccchhHHHH----HHHH
Confidence 444555555678999998644321111111 11 122445665555433333 2233 3444
Q ss_pred HhhhcCCccEEEeccchhhhhh
Q 032854 91 VKEDTGINSIFVLERGFKGWEA 112 (132)
Q Consensus 91 ~~~~~G~~~v~~l~gG~~~w~~ 112 (132)
.++..|+ ++..+.-|-.+|..
T Consensus 172 ~~~e~G~-~a~fvaTgqtgil~ 192 (339)
T COG3367 172 AAREEGI-KAGFVATGQTGILI 192 (339)
T ss_pred HHHHhCC-ccceEecCceeeEE
Confidence 4555898 55555555555544
Done!