Query 032855
Match_columns 132
No_of_seqs 120 out of 1079
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_L RP41, S18, YS12, 40S ri 100.0 4.4E-52 1.5E-56 319.5 13.4 119 12-132 34-156 (156)
2 2xzm_Q Ribosomal protein S17 c 100.0 2.9E-51 9.9E-56 315.2 13.4 114 19-132 44-157 (157)
3 2zkq_q 40S ribosomal protein S 100.0 3.1E-50 1E-54 309.8 8.7 116 14-132 38-158 (158)
4 3j20_R 30S ribosomal protein S 100.0 8.2E-49 2.8E-53 288.1 13.0 109 14-122 3-111 (113)
5 3iz6_P 40S ribosomal protein S 100.0 2E-50 6.9E-55 311.5 -5.2 120 12-131 35-160 (161)
6 3bbn_Q Ribosomal protein S17; 100.0 3.1E-42 1.1E-46 261.4 9.3 96 25-121 42-138 (142)
7 1qd7_I S17 ribosomal protein; 100.0 1.3E-36 4.6E-41 215.1 11.8 79 42-121 2-80 (89)
8 3r8n_Q 30S ribosomal protein S 100.0 1.5E-36 5.2E-41 211.0 5.4 78 42-120 2-79 (80)
9 2vqe_Q 30S ribosomal protein S 100.0 7.6E-35 2.6E-39 211.5 9.9 79 42-121 3-81 (105)
10 2vl6_A SSO MCM N-TER, minichro 29.0 37 0.0013 26.3 2.9 27 75-101 209-235 (268)
11 2kku_A Uncharacterized protein 28.8 37 0.0013 25.8 2.7 63 53-118 22-87 (161)
12 2ftc_K 39S ribosomal protein L 25.9 1.1E+02 0.0039 21.1 4.7 21 41-61 22-45 (98)
13 2v1q_A SLA1, cytoskeleton asse 25.6 44 0.0015 19.3 2.2 22 80-101 10-31 (60)
14 3ulb_A Target of rapamycin com 25.5 1.6E+02 0.0053 21.3 5.5 41 73-121 23-69 (121)
15 1ltl_A DNA replication initiat 25.5 46 0.0016 26.1 2.9 28 75-102 196-223 (279)
16 3iuw_A Activating signal coint 25.2 45 0.0016 22.5 2.4 48 71-119 19-66 (83)
17 3bmb_A Regulator of nucleoside 22.6 1.3E+02 0.0044 21.1 4.6 33 90-124 100-132 (136)
18 1d7q_A Translation initiation 22.5 2.3E+02 0.0079 20.7 6.6 55 43-111 31-89 (143)
19 1i07_A Epidermal growth factor 22.2 40 0.0014 19.7 1.5 23 80-102 9-31 (60)
20 2lj0_A Sorbin and SH3 domain-c 21.7 38 0.0013 21.0 1.4 22 81-102 15-36 (65)
21 1yn8_A NBP2, NAP1-binding prot 21.7 66 0.0022 18.5 2.5 22 81-102 10-31 (59)
22 1k4u_S Phagocyte NADPH oxidase 21.6 57 0.0019 19.1 2.2 24 79-102 12-35 (62)
23 2a28_A BZZ1 protein; SH3 domai 21.5 43 0.0015 19.1 1.6 22 82-103 10-31 (54)
24 1zlm_A Osteoclast stimulating 21.4 60 0.0021 18.7 2.2 23 80-102 11-33 (58)
25 1uti_A GRB2-related adaptor pr 21.3 58 0.002 18.8 2.1 23 80-102 9-31 (58)
26 1jo8_A ABP1P, actin binding pr 21.3 44 0.0015 19.4 1.6 21 82-102 10-30 (58)
27 1a62_A RHO; transcription term 21.0 1.3E+02 0.0044 21.3 4.3 29 90-118 90-118 (130)
28 2bz8_A SH3-domain kinase bindi 20.8 45 0.0015 19.3 1.6 20 83-102 12-31 (58)
29 2pn0_A Prokaryotic transcripti 20.8 1.2E+02 0.004 21.6 4.1 30 90-121 103-132 (141)
30 2fpe_A C-JUN-amino-terminal ki 20.7 42 0.0014 19.7 1.4 21 82-102 13-33 (62)
31 2oaw_A Spectrin alpha chain, b 20.5 66 0.0022 18.8 2.3 22 81-102 10-31 (65)
32 1zuu_A BZZ1 protein; SH3 domai 20.2 36 0.0012 19.7 1.0 23 81-103 10-32 (58)
No 1
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=4.4e-52 Score=319.46 Aligned_cols=119 Identities=60% Similarity=1.053 Sum_probs=113.0
Q ss_pred Eeeeccc----hhhhcccccccCCCCCcceeeeecEEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCC
Q 032855 12 WERTRVL----MSLCFSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISP 87 (132)
Q Consensus 12 ~~~~~~~----~~~~~~~~~~d~~cp~~g~~~vr~k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e 87 (132)
|-|..|| |+||++|+|+|++|||||||+|||++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+|||||
T Consensus 34 ~~~~iGl~~k~P~~a~~g~y~D~kCPf~G~lsvRgr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~ 113 (156)
T 3u5c_L 34 WYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSP 113 (156)
T ss_dssp CCCCCSTTCCCCHHHHHCCCCCTTCTTTSSCCEEEEEEEEEEEECCSTTEEEEEEEEEEEEGGGTEEEEEEEEEEEECCT
T ss_pred eeeecCcCccCChhhccceeccccCCcccceeEeeEEEEEEEEeecCCCeEEEEEEEEeecCccceEEECceEEEEECCC
Confidence 4466677 999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred CCCCCCCCEEEEeecccCCCeeeEEEEEeeecCCCCCcccccccC
Q 032855 88 CFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 132 (132)
Q Consensus 88 ~n~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~k~~~~~~~~~f~~~ 132 (132)
||+|++||+|+|+|||||||+|+|+|++|++++. ++++||++|
T Consensus 114 ~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ka~--~~~k~f~~f 156 (156)
T 3u5c_L 114 AFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAG--KANKQFAKF 156 (156)
T ss_dssp TSCCCTTCEEEEEEEEEEETTEEEEEEEECCCCS--SSGGGCCCC
T ss_pred cCcCCCCCEEEEEecccCCCcEeEEEEEEEecCC--CcccccccC
Confidence 8999999999999999999999999999999943 589999998
No 2
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=100.00 E-value=2.9e-51 Score=315.25 Aligned_cols=114 Identities=61% Similarity=1.098 Sum_probs=110.2
Q ss_pred hhhhcccccccCCCCCcceeeeecEEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEE
Q 032855 19 MSLCFSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVI 98 (132)
Q Consensus 19 ~~~~~~~~~~d~~cp~~g~~~vr~k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e~n~~kvGD~V~ 98 (132)
|+||++|+|+|++||||||++|||++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+|||||||+|++||+|+
T Consensus 44 P~~~~~~~~~D~kCPf~G~lsvRgr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~ 123 (157)
T 2xzm_Q 44 PKEAIEGTYVDKKCPFTSNLSIRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILV 123 (157)
T ss_dssp CHHHHTCCCCCTTCSSSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEE
T ss_pred ChHHhcccccCCCCCCccceeeeeEEEEEEEEEecCCccEEEEEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999997799999999999
Q ss_pred EeecccCCCeeeEEEEEeeecCCCCCcccccccC
Q 032855 99 IGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 132 (132)
Q Consensus 99 I~ecRPiSKtK~~~V~~Ii~k~~~~~~~~~f~~~ 132 (132)
|+|||||||+|+|+|++|++++..+.+++||++|
T Consensus 124 I~EcRPLSKtKrw~Vv~I~~ka~~g~~~k~f~~f 157 (157)
T 2xzm_Q 124 AGQCRPISKTVRFNALQVVPNEIIGSVRKQFLLF 157 (157)
T ss_dssp EEECCCCSSSCCEEEEEECCCCCCSCTTTCCCCC
T ss_pred EEEcCCCCCcEEEEEEEEEeccccCccchhhhcC
Confidence 9999999999999999999997755578999987
No 3
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=3.1e-50 Score=309.81 Aligned_cols=116 Identities=60% Similarity=1.068 Sum_probs=72.8
Q ss_pred eeccc----hhhhcccccccCCCCCcceeeeecEEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCC
Q 032855 14 RTRVL----MSLCFSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF 89 (132)
Q Consensus 14 ~~~~~----~~~~~~~~~~d~~cp~~g~~~vr~k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e~n 89 (132)
|..|| |+||++|+|+|++||||||++|||++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+|||||||
T Consensus 38 k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsvRGr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n 117 (158)
T 2zkq_q 38 KNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCF 117 (158)
T ss_dssp ---------------------------------CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSC
T ss_pred EecccCccCChHHhcccccCCCCCCccccceeeEEEEEEEEEccCCccEEEEEEEEEecCccceeeecceeEEEECCccc
Confidence 55555 89999999999999999999999999999999999999999999999999999999999999999996677
Q ss_pred -CCCCCCEEEEeecccCCCeeeEEEEEeeecCCCCCcccccccC
Q 032855 90 -RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 132 (132)
Q Consensus 90 -~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~k~~~~~~~~~f~~~ 132 (132)
+|++||+|+|+|||||||+|+|+|++|++++ |+++||++|
T Consensus 118 ~~~kvGD~V~I~E~RPLSKtKrw~Vv~I~~~~---~~~k~f~~f 158 (158)
T 2zkq_q 118 RDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA---GTKKQFQKF 158 (158)
T ss_dssp CCC-CCCEEEEECCSCSSSCC-CEEEEEEEC-------------
T ss_pred CcCCCCCEEEEEEccccCCcEEEEEEEEecCC---CcchhhhcC
Confidence 8999999999999999999999999999763 478999987
No 4
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.2e-49 Score=288.07 Aligned_cols=109 Identities=39% Similarity=0.658 Sum_probs=103.2
Q ss_pred eeccchhhhcccccccCCCCCcceeeeecEEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCC
Q 032855 14 RTRVLMSLCFSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 93 (132)
Q Consensus 14 ~~~~~~~~~~~~~~~d~~cp~~g~~~vr~k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e~n~~kv 93 (132)
|..||.-.+-+++|+|++||||||++|||++|+|+|+|+||+|||+|+++++++||+|+|+++++++|+|||||+|+|++
T Consensus 3 ~~igl~~~~p~~~~~d~~cPf~G~~~vrgr~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~n~~~v 82 (113)
T 3j20_R 3 RDIGLRVQPPAEKCDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKV 82 (113)
T ss_dssp CCCCTTCCCCSSCCCCSSSTTSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCT
T ss_pred hhcCCCCCCCcccccCCCCCCcceeeEeeEEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEEEEECCCCCCCCC
Confidence 45677777778999999999999999999999999999999999999999999999999999999999999944999999
Q ss_pred CCEEEEeecccCCCeeeEEEEEeeecCCC
Q 032855 94 GDHVIIGQCRPLSKTVRFNVLKVIPAGSS 122 (132)
Q Consensus 94 GD~V~I~ecRPiSKtK~~~V~~Ii~k~~~ 122 (132)
||+|+|+|||||||+|+|+|++|+++|.|
T Consensus 83 GD~V~I~E~RPlSKtKr~~vv~i~~~a~~ 111 (113)
T 3j20_R 83 GDKVLIAETRPLSKTKHFVVVAVLERAEE 111 (113)
T ss_dssp TSEEEEEECSCSSSSEEEEEEEECCCCCC
T ss_pred CCEEEEEecccCCCcEeEEEEEEEecccc
Confidence 99999999999999999999999999764
No 5
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-50 Score=311.53 Aligned_cols=120 Identities=87% Similarity=1.358 Sum_probs=79.2
Q ss_pred Eeeeccc----hhhhcccccccCCCCCcceeeeecEEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCC
Q 032855 12 WERTRVL----MSLCFSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISP 87 (132)
Q Consensus 12 ~~~~~~~----~~~~~~~~~~d~~cp~~g~~~vr~k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e 87 (132)
|-|..|| |+||++|+|+|++||||||++|||++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+|||||
T Consensus 35 ~~k~iGl~~k~P~~a~~g~y~D~kCPf~G~lsiRgril~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~ 114 (161)
T 3iz6_P 35 FWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSP 114 (161)
T ss_dssp -----CCCCCCEEEECCCCSSSSCCSEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCSSCEEEEEECCCSSSSCCE
T ss_pred EEEecCcCCCCChHHhcCcccccCCCccceeEEeeEEEEEEEEeccCCCeEEEEEEEEEecCccceEEECceeEEEECCC
Confidence 5566777 999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred CCCCCCCCEEEEeecccCCCeeeEEEEEeeecCCCC--Cccccccc
Q 032855 88 CFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSG--GAKKAFTA 131 (132)
Q Consensus 88 ~n~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~k~~~~--~~~~~f~~ 131 (132)
||+|++||+|+|+|||||||+|+|+|++|++++..+ +.++||.+
T Consensus 115 ~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~~~~~~~~~~~k~f~~ 160 (161)
T 3iz6_P 115 CFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSTGGSGGKKAFTA 160 (161)
T ss_dssp EEEECCCCCC------------------------------------
T ss_pred CCcCCCCCEEEEEeccCCCCcEeEEEEEEEecCcccccccchhccc
Confidence 899999999999999999999999999999998765 67899965
No 6
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.1e-42 Score=261.37 Aligned_cols=96 Identities=27% Similarity=0.291 Sum_probs=76.4
Q ss_pred cccccCCCCCcceeeeec-EEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeecc
Q 032855 25 GTYIDKKCPFTGTVSIRG-RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCR 103 (132)
Q Consensus 25 ~~~~d~~cp~~g~~~vr~-k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e~n~~kvGD~V~I~ecR 103 (132)
.++.|++|||||+++|+| ++++|+|+|+||+|||+|+|+++++||+|+|+++++++|+||| |+|+|++||+|+|+|||
T Consensus 42 p~~~~~~cP~~G~lsvrg~k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHD-e~n~~kvGD~V~I~E~R 120 (142)
T 3bbn_Q 42 PNSFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHD-PDNQFKVGDVVRLEKSR 120 (142)
T ss_dssp ------------------CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEEC-TTCCCCTTEEEEEEECC
T ss_pred CCCCCCcCCCCccccccceEEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEEC-CCCCCCCCCEEEEEEcc
Confidence 358999999999999999 9999999999999999999999999999999999999999999 78999999999999999
Q ss_pred cCCCeeeEEEEEeeecCC
Q 032855 104 PLSKTVRFNVLKVIPAGS 121 (132)
Q Consensus 104 PiSKtK~~~V~~Ii~k~~ 121 (132)
||||+|+|+|++|++++.
T Consensus 121 PLSKtKrw~VveIveka~ 138 (142)
T 3bbn_Q 121 PISKTKSFVALPVIARAA 138 (142)
T ss_dssp CSSSSCCEEECCCSEEEC
T ss_pred CCCCcEEEEEEEEEeccc
Confidence 999999999999999865
No 7
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=100.00 E-value=1.3e-36 Score=215.07 Aligned_cols=79 Identities=29% Similarity=0.343 Sum_probs=76.8
Q ss_pred cEEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeecccCCCeeeEEEEEeeecCC
Q 032855 42 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS 121 (132)
Q Consensus 42 ~k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e~n~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~k~~ 121 (132)
+++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+||| |+|+|++||+|+|+|||||||+|+|+|.+|++++.
T Consensus 2 ~k~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHD-e~n~~k~GD~V~I~E~RPlSKtK~~~vv~iv~~a~ 80 (89)
T 1qd7_I 2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHD-EHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAV 80 (89)
T ss_pred cEEEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeC-CccCCCCCCEEEEEEcccCCCCEEEEEEEEEeece
Confidence 58999999999999999999999999999999999999999999 78899999999999999999999999999999876
No 8
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=100.00 E-value=1.5e-36 Score=210.96 Aligned_cols=78 Identities=31% Similarity=0.441 Sum_probs=75.7
Q ss_pred cEEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeecccCCCeeeEEEEEeeecC
Q 032855 42 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG 120 (132)
Q Consensus 42 ~k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e~n~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~k~ 120 (132)
.++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+||| |+|+|++||+|+|+|||||||+|+|.|.+|+++|
T Consensus 2 ~r~l~G~VvS~km~KTvvV~v~~~~~hp~Y~K~~kr~kk~~aHD-e~n~~~~GD~V~I~e~RPlSKtk~~~v~~i~~~~ 79 (80)
T 3r8n_Q 2 IRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHD-ENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 79 (80)
T ss_dssp CSCBCCEEEECCSTTCCEEECCEEEEETTTEEEEEECCEEECBC-GGGCCCTTCEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred CeEEEEEEEecCCCCeEEEEEEEEEEcccccccEEecceEEEEC-CCCCCCCCCEEEEEEeccCCCcEeEEEEEEEEec
Confidence 36899999999999999999999999999999999999999999 8999999999999999999999999999999986
No 9
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=100.00 E-value=7.6e-35 Score=211.47 Aligned_cols=79 Identities=34% Similarity=0.433 Sum_probs=76.5
Q ss_pred cEEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCCCCCCCCEEEEeecccCCCeeeEEEEEeeecCC
Q 032855 42 GRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS 121 (132)
Q Consensus 42 ~k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e~n~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~k~~ 121 (132)
+++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+||| |+|+|++||+|+|+|||||||+|+|.|++|++++.
T Consensus 3 ~k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHD-e~n~~k~GD~V~I~E~RPlSKtKr~~vv~iv~~a~ 81 (105)
T 2vqe_Q 3 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHD-PEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGR 81 (105)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEEC-TTCCCCTTCEEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred ceEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEEC-CCCCCCCCCEEEEEEcccCCCCEEEEEEEEeeccc
Confidence 58999999999999999999999999999999999999999999 77999999999999999999999999999999875
No 10
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=29.02 E-value=37 Score=26.28 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=20.8
Q ss_pred EeeeeeEEEEcCCCCCCCCCCEEEEee
Q 032855 75 EKRHSNIPAHISPCFRVKEGDHVIIGQ 101 (132)
Q Consensus 75 ikr~kky~vHD~e~n~~kvGD~V~I~e 101 (132)
+.|+-...++|+=.+.|++||.|.|.-
T Consensus 209 ~Prsi~v~l~~dLvd~~~PGDrV~vtG 235 (268)
T 2vl6_A 209 LPRQLEIILEDDLVDSARPGDRVKVTG 235 (268)
T ss_dssp CCCEEEEEEEGGGTTSSCTTCEEEEEE
T ss_pred CCcEEEEEEccCccCcccCCCEEEEEE
Confidence 456777777775566899999999765
No 11
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=28.79 E-value=37 Score=25.81 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=37.7
Q ss_pred CCCCeEEEEEeEEEeeeeeee-EE-eeeeeEEEEcCCCCCCCCCCEEEEeecccCCCeee-EEEEEeee
Q 032855 53 KMNRTIIVRRNYLHFVKKYQR-YE-KRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVR-FNVLKVIP 118 (132)
Q Consensus 53 Km~KTivV~v~~~~~hpkY~K-~i-kr~kky~vHD~e~n~~kvGD~V~I~ecRPiSKtK~-~~V~~Ii~ 118 (132)
.|++.+.|.... .|.|-. ++ ..+|.|+.-...--.++.||+|.|-+++|.-+-.- +.+.+|+.
T Consensus 22 ~m~~i~~VllSI---kpey~~rIf~~GkK~flrr~~v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~ 87 (161)
T 2kku_A 22 HMSKIVGVTYPI---PKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVVL 87 (161)
T ss_dssp -CTTCEEEEECC---SSSTTHHHHHHSCEEEEESSCSCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEE
T ss_pred ccceeEEEEEec---CHHHHHHHHhcCceEEEeccCcccccCCCCEEEEEEcCCCcEEEEEEEEEEEEe
Confidence 466655444322 245443 33 34455532110122799999999999999988775 45677776
No 12
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=25.94 E-value=1.1e+02 Score=21.13 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=16.7
Q ss_pred ecEEEEEEEEec---CCCCeEEEE
Q 032855 41 RGRILAGTCHSA---KMNRTIIVR 61 (132)
Q Consensus 41 r~k~l~G~VVS~---Km~KTivV~ 61 (132)
|-|.++|+|++. ..+.|.+|+
T Consensus 22 R~q~F~GvvI~~~~~G~~~tftvR 45 (98)
T 2ftc_K 22 KISQFLGICIQRSGRGLGATFILR 45 (98)
T ss_pred EeeeEEEEEEEEECCCCCcEEEEE
Confidence 568899999975 467888876
No 13
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=25.58 E-value=44 Score=19.35 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=15.5
Q ss_pred eEEEEcCCCCCCCCCCEEEEee
Q 032855 80 NIPAHISPCFRVKEGDHVIIGQ 101 (132)
Q Consensus 80 ky~vHD~e~n~~kvGD~V~I~e 101 (132)
.|.+.++....++.||+|.|.+
T Consensus 10 dy~~~~~~eLs~~~Gd~i~v~~ 31 (60)
T 2v1q_A 10 DFMAESQDELTIKSGDKVYILD 31 (60)
T ss_dssp CBCCCSTTBCCBCTTCEEEEEE
T ss_pred eECCCCCCCccCCCCCEEEEEe
Confidence 3444444455789999999987
No 14
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=25.53 E-value=1.6e+02 Score=21.27 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=28.6
Q ss_pred eEEeeeeeEEEEcCCCCCCCCCCEEEEeecc------cCCCeeeEEEEEeeecCC
Q 032855 73 RYEKRHSNIPAHISPCFRVKEGDHVIIGQCR------PLSKTVRFNVLKVIPAGS 121 (132)
Q Consensus 73 K~ikr~kky~vHD~e~n~~kvGD~V~I~ecR------PiSKtK~~~V~~Ii~k~~ 121 (132)
.++.++.+.++=| ||.|-|.+.- .-+||.+|.+..|+....
T Consensus 23 ~~~~~~ER~L~ID--------GdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K~ 69 (121)
T 3ulb_A 23 SFINKHERTLAID--------GDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVKK 69 (121)
T ss_dssp EEEEEEEEEEEEE--------TTEEEEECCC-------CCCCEEEEGGGEEEEEE
T ss_pred cccccccEEEEEc--------CceEEEecCCCCcccccCCcEEEEEEeeEEEEEe
Confidence 3566777777777 8999888642 236888888877776543
No 15
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=25.47 E-value=46 Score=26.07 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=20.9
Q ss_pred EeeeeeEEEEcCCCCCCCCCCEEEEeec
Q 032855 75 EKRHSNIPAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 75 ikr~kky~vHD~e~n~~kvGD~V~I~ec 102 (132)
+.|+-...++|+=.+.|++||.|.|.-.
T Consensus 196 ~Prsi~V~l~~dLvd~~~PGDrV~vtGI 223 (279)
T 1ltl_A 196 QPRQITVVLEDDLVDTLTPGDIVRVTGT 223 (279)
T ss_dssp CCCEEEEEEEGGGTTCCCTTCEEEEEEE
T ss_pred CCeEEEEEEcccccCccCCCCEEEEEEE
Confidence 3566677777755568999999997663
No 16
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=25.15 E-value=45 Score=22.49 Aligned_cols=48 Identities=13% Similarity=0.024 Sum_probs=28.0
Q ss_pred eeeEEeeeeeEEEEcCCCCCCCCCCEEEEeecccCCCeeeEEEEEeeec
Q 032855 71 YQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPA 119 (132)
Q Consensus 71 Y~K~ikr~kky~vHD~e~n~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~k 119 (132)
|.-.....|++.+-- .....++||++.+.|..+=.-|-+-...+|+.-
T Consensus 19 F~~V~~G~Kt~EiR~-nDr~~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i 66 (83)
T 3iuw_A 19 FKAVKERRKTFEIRK-NDRNFQVGDILILEEYMNGMYLDDECEAEVIYI 66 (83)
T ss_dssp HHHHHTTSCCEEEEE-CCSCCCTTCEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred HHHHHcCCcEEEEEe-cccCCCCCCEEEEEEccCCCccCcEEEEEEEEE
Confidence 333444556666654 234599999999999853212334444555554
No 17
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=22.60 E-value=1.3e+02 Score=21.10 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCCCCCEEEEeecccCCCeeeEEEEEeeecCCCCC
Q 032855 90 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG 124 (132)
Q Consensus 90 ~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~k~~~~~ 124 (132)
-.++||.|.+.- |-.+...|.|.+|......||
T Consensus 100 Gk~~GD~v~v~~--p~G~~~~~~I~~I~~~~e~~g 132 (136)
T 3bmb_A 100 GLRVGDSIHWEL--PGGVATHLEVLELEYQPEAAG 132 (136)
T ss_dssp TCBTTCEEEEEE--TTTEEEEEEEEEEEECTTTTT
T ss_pred CCCCCCEEEEEc--CCCCEEEEEEEEEEecCcCcc
Confidence 468999999873 655578999999987644333
No 18
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.46 E-value=2.3e+02 Score=20.73 Aligned_cols=55 Identities=11% Similarity=-0.020 Sum_probs=37.4
Q ss_pred EEEEEEEEecCCCCeEEEEEeEEEeeeeeeeEEeeeeeEEEEcCCCC----CCCCCCEEEEeecccCCCeeeE
Q 032855 43 RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCF----RVKEGDHVIIGQCRPLSKTVRF 111 (132)
Q Consensus 43 k~l~G~VVS~Km~KTivV~v~~~~~hpkY~K~ikr~kky~vHD~e~n----~~kvGD~V~I~ecRPiSKtK~~ 111 (132)
....|+|+....+....|..+- -..++||-+... -...||.|++.. +|...+|-=
T Consensus 31 ge~~g~V~e~lgn~~f~V~l~n-------------G~~~La~I~GKmRk~IwI~~GD~VlVe~-~~yd~~KG~ 89 (143)
T 1d7q_A 31 GQEYAQVIKMLGNGRLEAMCFD-------------GVKRLCHIRGKLRKKVWINTSDIILVGL-RDYQDNKAD 89 (143)
T ss_dssp TEEEEEEEEECSSSEEEEEETT-------------TEEEEEECCSGGGGSCCCCTTCEEEEEC-SSSSSSCCE
T ss_pred CEEEEEEEEEcCCCEEEEEeCC-------------CCEEEEEecccceeeEEecCCCEEEEee-ccCCCCeEE
Confidence 4688999998888888777531 234556663211 367899999775 688877743
No 19
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=22.21 E-value=40 Score=19.72 Aligned_cols=23 Identities=22% Similarity=0.080 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCCCCCCEEEEeec
Q 032855 80 NIPAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 80 ky~vHD~e~n~~kvGD~V~I~ec 102 (132)
.|.+.++....++.||+|.|.+.
T Consensus 9 dy~~~~~~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 9 DFVARNSSELSVMKDDVLEILDD 31 (60)
T ss_dssp CBCCSSTTBCCBCTTCEEEECGG
T ss_pred cCCCCCCCcccCCCCCEEEEEEc
Confidence 34444434557899999999875
No 20
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=21.73 E-value=38 Score=20.98 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=15.9
Q ss_pred EEEEcCCCCCCCCCCEEEEeec
Q 032855 81 IPAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 81 y~vHD~e~n~~kvGD~V~I~ec 102 (132)
|.+.++.+..++.||+|.|.+.
T Consensus 15 y~a~~~~ELs~~~Gd~i~v~~~ 36 (65)
T 2lj0_A 15 YIPQNDDELELRDGDIVDVMEK 36 (65)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEE
T ss_pred ECCCCcCCcCCCCCCEEEEeEe
Confidence 4444445568999999998764
No 21
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=21.71 E-value=66 Score=18.46 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=15.2
Q ss_pred EEEEcCCCCCCCCCCEEEEeec
Q 032855 81 IPAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 81 y~vHD~e~n~~kvGD~V~I~ec 102 (132)
|.+.++....++.||+|.|.+.
T Consensus 10 ~~~~~~~eLs~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 10 FEPENDNELRLAEGDIVFISYK 31 (59)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEE
T ss_pred CCCCCCCCcCCCCCCEEEEEEc
Confidence 3444434557899999999764
No 22
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=21.60 E-value=57 Score=19.14 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=16.7
Q ss_pred eeEEEEcCCCCCCCCCCEEEEeec
Q 032855 79 SNIPAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 79 kky~vHD~e~n~~kvGD~V~I~ec 102 (132)
-.|.+.++.....+.||+|.|.+.
T Consensus 12 ~dy~~~~~~eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 12 FSYEATQPEDLEFQEGDIILVLSK 35 (62)
T ss_dssp SCBCCCSSSBCCBCSSCEEEEEEE
T ss_pred CCCCcCCCCCccCCCCCEEEEEEe
Confidence 344455544567899999999875
No 23
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=21.48 E-value=43 Score=19.11 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=14.9
Q ss_pred EEEcCCCCCCCCCCEEEEeecc
Q 032855 82 PAHISPCFRVKEGDHVIIGQCR 103 (132)
Q Consensus 82 ~vHD~e~n~~kvGD~V~I~ecR 103 (132)
.+.++.....+.||+|.|.+..
T Consensus 10 ~~~~~~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 10 EAQGDDEISIDPGDIITVIRGD 31 (54)
T ss_dssp CCCSTTBCCBCTTCEEEEEECC
T ss_pred CcCCCCCccCCCCCEEEEEEec
Confidence 3334344578999999988743
No 24
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=21.41 E-value=60 Score=18.75 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCCCCCCEEEEeec
Q 032855 80 NIPAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 80 ky~vHD~e~n~~kvGD~V~I~ec 102 (132)
.|.+.++....++.||+|.|.+.
T Consensus 11 dy~~~~~~eLs~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 11 TFEPRTPDELYFEEGDIIYITDM 33 (58)
T ss_dssp CBCCSSTTBCCBCTTCEEEEEEC
T ss_pred cCCCCCCCCccCCCCCEEEEEEe
Confidence 34444434557899999999875
No 25
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=21.32 E-value=58 Score=18.78 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=16.0
Q ss_pred eEEEEcCCCCCCCCCCEEEEeec
Q 032855 80 NIPAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 80 ky~vHD~e~n~~kvGD~V~I~ec 102 (132)
.|.+.++.....+.||+|.|.+.
T Consensus 9 dy~~~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 1uti_A 9 DFEALEEDELGFRSGEVVEVLDS 31 (58)
T ss_dssp CBCCCSTTBCCBCTTCEEEEEEC
T ss_pred cCCCCCcCCCCCCCCCEEEEEEE
Confidence 34444434557899999999875
No 26
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=21.27 E-value=44 Score=19.39 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=14.8
Q ss_pred EEEcCCCCCCCCCCEEEEeec
Q 032855 82 PAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 82 ~vHD~e~n~~kvGD~V~I~ec 102 (132)
.+.++.....+.||+|.|.+.
T Consensus 10 ~~~~~~eLs~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 10 DAAEDNELTFVENDKIINIEF 30 (58)
T ss_dssp CCCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCCcccCCCCEEEEEEe
Confidence 344434557899999999874
No 27
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=20.99 E-value=1.3e+02 Score=21.34 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.3
Q ss_pred CCCCCCEEEEeecccCCCeeeEEEEEeee
Q 032855 90 RVKEGDHVIIGQCRPLSKTVRFNVLKVIP 118 (132)
Q Consensus 90 ~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~ 118 (132)
.++-||+|...-..|...-|.|.|.+|..
T Consensus 90 ~lr~GD~V~g~vr~~~~~ek~~~l~~v~~ 118 (130)
T 1a62_A 90 NLRTGDTISGKIRPPKEGERYFALLKVNE 118 (130)
T ss_dssp TCCTTCEEEEEEECCCTTCCSEEEEEEEE
T ss_pred CCCCCCEEEEEEeCCCCCCcccceeEEEe
Confidence 68999999988888888889999999865
No 28
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=20.84 E-value=45 Score=19.33 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=14.5
Q ss_pred EEcCCCCCCCCCCEEEEeec
Q 032855 83 AHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 83 vHD~e~n~~kvGD~V~I~ec 102 (132)
+.++.....+.||+|.|.+.
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 2bz8_A 12 AQHDDELTISVGEIITNIRK 31 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEEC
T ss_pred CCCcCEeeECCCCEEEEEEe
Confidence 33434567899999998875
No 29
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=20.79 E-value=1.2e+02 Score=21.56 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=22.3
Q ss_pred CCCCCCEEEEeecccCCCeeeEEEEEeeecCC
Q 032855 90 RVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS 121 (132)
Q Consensus 90 ~~kvGD~V~I~ecRPiSKtK~~~V~~Ii~k~~ 121 (132)
-.++||.|.+.- |-.+...|.|.+|.....
T Consensus 103 Gk~vGD~v~v~~--P~G~~~~~~I~~I~~~~e 132 (141)
T 2pn0_A 103 GLAQGDEIEWPK--PGGGVLRVRIVEVTYQPE 132 (141)
T ss_dssp TCBTTCEEEEEC--TTSSEEEEEEEEEEC---
T ss_pred CCCCCCEEEEEc--CCCCEEEEEEEEEEeCCc
Confidence 478999999874 666678999999986543
No 30
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=20.71 E-value=42 Score=19.75 Aligned_cols=21 Identities=5% Similarity=0.058 Sum_probs=14.2
Q ss_pred EEEcCCCCCCCCCCEEEEeec
Q 032855 82 PAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 82 ~vHD~e~n~~kvGD~V~I~ec 102 (132)
.+.++....++.||+|.|.+.
T Consensus 13 ~~~~~~eLs~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 13 VPRHEDELELEVDDPLLVELQ 33 (62)
T ss_dssp CCSSTTBCCBCTTCEEEEEEE
T ss_pred CccCcCcCcCCCCCEEEEEEe
Confidence 343434457899999999653
No 31
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=20.53 E-value=66 Score=18.79 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=15.3
Q ss_pred EEEEcCCCCCCCCCCEEEEeec
Q 032855 81 IPAHISPCFRVKEGDHVIIGQC 102 (132)
Q Consensus 81 y~vHD~e~n~~kvGD~V~I~ec 102 (132)
|.+-++....++.||+|.|.+.
T Consensus 10 y~~~~~~eLs~~~Gd~i~v~~~ 31 (65)
T 2oaw_A 10 YQEKSPREVTMKKGDILTLLNS 31 (65)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEC
T ss_pred CCccCCCCCCCCCCCEEEEEEc
Confidence 3344434457899999999874
No 32
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=20.18 E-value=36 Score=19.68 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=15.8
Q ss_pred EEEEcCCCCCCCCCCEEEEeecc
Q 032855 81 IPAHISPCFRVKEGDHVIIGQCR 103 (132)
Q Consensus 81 y~vHD~e~n~~kvGD~V~I~ecR 103 (132)
|.+.++....++.||+|.|.+..
T Consensus 10 y~~~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuu_A 10 YVQKDDDEITITPGDKISLVARD 32 (58)
T ss_dssp BCCCSTTBCCBCTTCCEEEEECC
T ss_pred ECCcCCCcccCCCCCEEEEeEcC
Confidence 33444345578999999998754
Done!