RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032855
         (132 letters)



>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 100

 Score = 85.9 bits (213), Expect = 1e-23
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 43  RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 102
           ++L G   S KM +T+ V          Y +  KR     AH  P  + K GD V I + 
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAH-DPEEKYKLGDVVEIIES 61

Query: 103 RPLSKTVRFNVLKVI 117
           RP+SK  RF VL+++
Sbjct: 62  RPISKRKRFRVLRLV 76


>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli
           [TaxId: 562]}
          Length = 78

 Score = 78.2 bits (193), Expect = 7e-21
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 43  RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 102
           R L G   S KM ++I+V          Y ++ KR + +  H         GD V I +C
Sbjct: 1   RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENN-ECGIGDVVEIREC 59

Query: 103 RPLSKTVRFNVLKVI 117
           RPLSKT  + +++V+
Sbjct: 60  RPLSKTKSWTLVRVV 74


>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 81

 Score = 77.0 bits (190), Expect = 2e-20
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 41  RGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIG 100
           + ++  G   S KM++TI V          Y +  K      AH       K GD V I 
Sbjct: 1   QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHN-EAKVGDIVKIM 59

Query: 101 QCRPLSKTVRFNVLKVI 117
           + RPLS T RF +++++
Sbjct: 60  ETRPLSATKRFRLVEIV 76


>d1kbaa_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus
          multicinctus), kappa-bungarotoxin [TaxId: 8616]}
          Length = 66

 Score = 25.6 bits (56), Expect = 0.85
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 21 LCFSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTII 59
          +CF     DK C   G V  +G     TC   + N   +
Sbjct: 20 ICFLKAQCDKFCSIRGPVIEQG--CVATCPQFRSNYRSL 56


>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 132

 Score = 26.2 bits (57), Expect = 1.1
 Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 43 RILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSN--IPAHISPCF 89
           I+  T   +   R   VRR Y  F    +   K  S    P  + P  
Sbjct: 32 EIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHL 80


>d1cz5a2 d.31.1.1 (A:92-185) C-terminal domain of VAT-N, VAT-Nc
           {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 94

 Score = 25.6 bits (56), Expect = 1.2
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 91  VKEGDHVII-GQCRPLSKTVRFNVLKVIPAG 120
           + E D++ + G        + F V+K +P+ 
Sbjct: 38  MLEQDNISVPGLTLAGQTGLLFKVVKTLPSK 68


>d1lsia_ g.7.1.1 (A:) Long neurotoxin 1 (component LSIII) {Sea
          snake (Laticauda semifasciata) [TaxId: 8631]}
          Length = 66

 Score = 24.4 bits (53), Expect = 2.0
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 21 LCFSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTI 58
          +C+  ++ +  C   G V   G   A TC S      I
Sbjct: 19 ICYVKSWCNAWCSSRGKVLEFG--CAATCPSVNTGTEI 54


>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus
           faecium, VAT(D) [TaxId: 1352]}
          Length = 203

 Score = 24.4 bits (52), Expect = 5.0
 Identities = 12/98 (12%), Positives = 26/98 (26%)

Query: 23  FSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIP 82
           F    +         + I      G   +  MN          +    +    ++H    
Sbjct: 46  FDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKL 105

Query: 83  AHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG 120
             +        G+ V IG+   +   V+     ++ A 
Sbjct: 106 DQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAAN 143


>d1hc9a_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus
          multicinctus), Alpha-bungarotoxin [TaxId: 8616]}
          Length = 74

 Score = 22.9 bits (49), Expect = 7.0
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 21 LCFSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTI 58
          LC+   + D  C   G V   G   A TC S K    +
Sbjct: 22 LCYRKMWCDVFCSSRGKVVELG--CAATCPSKKPYEEV 57


>d1ntna_ g.7.1.1 (A:) Neurotoxin I {Snake (Naja naja oxiana)
          [TaxId: 8657]}
          Length = 72

 Score = 22.9 bits (49), Expect = 7.6
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 21 LCFSGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTI 58
          LC++ T+ D  C   G V   G   A TC + +  + I
Sbjct: 20 LCYTKTWCDAWCGSRGKVIELG--CAATCPTVESYQDI 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 515,496
Number of extensions: 23142
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 20
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.4 bits)