Query 032856
Match_columns 132
No_of_seqs 121 out of 1650
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 06:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11478 putative lyase; Provi 99.9 6.9E-24 1.5E-28 127.0 16.2 122 7-129 2-128 (129)
2 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 5.9E-24 1.3E-28 129.3 15.8 121 9-130 1-141 (142)
3 PLN02367 lactoylglutathione ly 99.9 3.1E-23 6.7E-28 133.3 16.1 123 9-131 73-223 (233)
4 PLN03042 Lactoylglutathione ly 99.9 5.1E-23 1.1E-27 129.6 16.0 125 7-131 23-175 (185)
5 TIGR03645 glyox_marine lactoyl 99.9 7.8E-23 1.7E-27 127.0 15.5 122 10-131 3-152 (162)
6 cd08352 Glo_EDI_BRP_like_1 Thi 99.9 8E-23 1.7E-27 121.3 14.8 120 9-129 1-125 (125)
7 cd07241 Glo_EDI_BRP_like_3 Thi 99.9 7.6E-23 1.6E-27 121.6 13.8 117 11-128 1-125 (125)
8 cd08342 HPPD_N_like N-terminal 99.9 6.8E-23 1.5E-27 123.9 13.5 119 12-132 1-125 (136)
9 TIGR00068 glyox_I lactoylgluta 99.9 9.2E-23 2E-27 125.3 13.9 124 7-131 13-142 (150)
10 cd07243 2_3_CTD_C C-terminal d 99.9 1E-22 2.2E-27 124.1 13.8 113 8-129 3-124 (143)
11 PRK04101 fosfomycin resistance 99.9 1.8E-22 4E-27 122.5 14.6 113 8-130 1-119 (139)
12 cd08364 FosX FosX, a fosfomyci 99.9 2.1E-22 4.6E-27 121.1 14.3 115 8-130 1-122 (131)
13 cd07233 Glyoxalase_I Glyoxalas 99.9 5.2E-22 1.1E-26 117.5 14.4 114 12-128 1-121 (121)
14 cd08361 PpCmtC_N N-terminal do 99.9 8.3E-22 1.8E-26 117.4 15.2 110 6-131 1-120 (124)
15 cd07253 Glo_EDI_BRP_like_2 Thi 99.9 8.9E-22 1.9E-26 116.8 15.0 117 9-130 1-125 (125)
16 cd07245 Glo_EDI_BRP_like_9 Thi 99.9 4E-22 8.6E-27 116.3 13.2 110 12-127 1-114 (114)
17 TIGR03081 metmalonyl_epim meth 99.9 2.1E-22 4.6E-27 120.2 12.2 119 11-129 1-128 (128)
18 PLN02300 lactoylglutathione ly 99.9 4.9E-22 1.1E-26 133.5 14.8 121 7-131 20-149 (286)
19 cd08347 PcpA_C_like C-terminal 99.9 6.8E-22 1.5E-26 122.1 14.2 113 11-131 1-121 (157)
20 cd07267 THT_Oxygenase_N N-term 99.9 1.3E-21 2.8E-26 114.8 14.1 107 9-130 1-110 (113)
21 cd08363 FosB FosB, a fosfomyci 99.9 7.5E-22 1.6E-26 118.7 13.3 110 12-131 1-116 (131)
22 cd09014 BphC-JF8_C_like C-term 99.9 1.2E-21 2.6E-26 122.1 14.5 118 7-130 2-127 (166)
23 cd07252 BphC1-RGP6_N_like N-te 99.9 1.7E-21 3.6E-26 115.5 14.2 108 10-131 1-118 (120)
24 PRK10291 glyoxalase I; Provisi 99.9 7.1E-22 1.5E-26 118.4 12.6 112 16-131 1-121 (129)
25 cd07255 Glo_EDI_BRP_like_12 Th 99.9 4E-21 8.6E-26 114.4 15.7 113 10-131 1-120 (125)
26 cd07257 THT_oxygenase_C The C- 99.9 4.9E-22 1.1E-26 122.4 11.5 112 11-130 1-125 (153)
27 cd07265 2_3_CTD_N N-terminal d 99.9 3.3E-21 7.2E-26 114.4 14.1 109 9-131 2-120 (122)
28 cd09013 BphC-JF8_N_like N-term 99.9 2.7E-21 5.9E-26 114.6 13.6 110 7-130 2-118 (121)
29 cd08351 ChaP_like ChaP, an enz 99.9 4.3E-21 9.3E-26 114.1 14.3 107 9-131 2-122 (123)
30 cd07242 Glo_EDI_BRP_like_6 Thi 99.9 6.6E-21 1.4E-25 113.9 14.7 113 11-129 1-127 (128)
31 cd07263 Glo_EDI_BRP_like_16 Th 99.9 6.3E-21 1.4E-25 112.2 14.4 113 14-129 1-119 (119)
32 cd07237 BphC1-RGP6_C_like C-te 99.9 2.7E-21 5.9E-26 119.2 13.2 115 8-130 6-131 (154)
33 cd07240 ED_TypeI_classII_N N-t 99.9 6.6E-21 1.4E-25 112.1 13.5 106 10-130 1-114 (117)
34 cd07247 SgaA_N_like N-terminal 99.9 1.5E-20 3.2E-25 110.2 14.6 109 12-129 1-114 (114)
35 cd07244 FosA FosA, a Fosfomyci 99.9 7.4E-21 1.6E-25 112.8 12.9 107 11-130 1-110 (121)
36 cd07256 HPCD_C_class_II C-term 99.9 1.2E-20 2.5E-25 117.2 14.3 112 10-130 2-123 (161)
37 cd09011 Glo_EDI_BRP_like_23 Th 99.9 1.3E-20 2.9E-25 111.5 13.8 114 10-130 1-119 (120)
38 cd08355 Glo_EDI_BRP_like_14 Th 99.9 3.2E-20 7E-25 110.1 15.4 116 15-130 3-122 (122)
39 cd08360 MhqB_like_C C-terminal 99.9 1.4E-20 2.9E-25 113.6 13.9 109 10-130 2-120 (134)
40 cd08362 BphC5-RrK37_N_like N-t 99.9 1.3E-20 2.8E-25 111.4 13.3 109 9-131 1-118 (120)
41 cd08346 PcpA_N_like N-terminal 99.9 8.4E-21 1.8E-25 112.8 12.3 116 11-128 1-126 (126)
42 cd07249 MMCE Methylmalonyl-CoA 99.9 1.3E-20 2.8E-25 112.4 13.1 118 12-129 1-128 (128)
43 cd08348 BphC2-C3-RGP6_C_like T 99.9 4E-20 8.6E-25 111.4 15.2 113 11-131 1-121 (134)
44 cd08358 Glo_EDI_BRP_like_21 Th 99.9 3.8E-20 8.2E-25 110.1 13.9 110 11-129 2-126 (127)
45 PF00903 Glyoxalase: Glyoxalas 99.9 8.7E-22 1.9E-26 117.2 6.4 117 11-127 1-128 (128)
46 cd07266 HPCD_N_class_II N-term 99.9 3.8E-20 8.1E-25 109.6 13.2 108 8-130 1-118 (121)
47 cd08359 Glo_EDI_BRP_like_22 Th 99.9 7E-20 1.5E-24 108.1 14.2 110 14-129 4-119 (119)
48 cd07246 Glo_EDI_BRP_like_8 Thi 99.9 1.4E-19 3E-24 107.1 15.5 113 15-129 5-121 (122)
49 cd08345 Fosfomycin_RP Fosfomyc 99.9 3.5E-20 7.6E-25 108.5 12.5 105 14-130 1-111 (113)
50 cd07239 BphC5-RK37_C_like C-te 99.9 6.6E-20 1.4E-24 111.9 13.6 108 10-131 3-118 (144)
51 cd07264 Glo_EDI_BRP_like_15 Th 99.9 1.3E-19 2.9E-24 107.7 14.6 115 12-130 1-125 (125)
52 cd08343 ED_TypeI_classII_C C-t 99.9 1E-19 2.2E-24 109.4 13.9 110 13-131 1-118 (131)
53 PRK06724 hypothetical protein; 99.8 8.4E-20 1.8E-24 109.3 13.1 108 8-131 4-124 (128)
54 cd07254 Glo_EDI_BRP_like_20 Th 99.8 3.1E-19 6.6E-24 105.6 15.1 108 13-132 3-119 (120)
55 cd08354 Glo_EDI_BRP_like_13 Th 99.8 1.8E-19 4E-24 106.6 14.1 114 12-130 1-122 (122)
56 cd08357 Glo_EDI_BRP_like_18 Th 99.8 1.4E-19 3.1E-24 107.5 13.4 111 14-130 2-125 (125)
57 TIGR03211 catechol_2_3 catecho 99.8 1E-19 2.2E-24 123.2 14.1 114 7-128 141-263 (303)
58 cd08350 BLMT_like BLMT, a bleo 99.8 3.1E-19 6.8E-24 105.6 13.4 104 14-130 5-119 (120)
59 cd08344 MhqB_like_N N-terminal 99.8 4.4E-19 9.5E-24 103.9 13.3 104 10-130 1-109 (112)
60 cd07258 PpCmtC_C C-terminal do 99.8 2.4E-19 5.2E-24 109.0 12.4 105 13-130 1-114 (141)
61 cd08349 BLMA_like Bleomycin bi 99.8 8.5E-19 1.8E-23 102.2 14.0 105 16-129 3-112 (112)
62 cd06587 Glo_EDI_BRP_like This 99.8 4.6E-19 1E-23 102.5 12.6 108 14-127 1-112 (112)
63 cd08356 Glo_EDI_BRP_like_17 Th 99.8 5.1E-19 1.1E-23 103.8 12.2 100 15-129 5-113 (113)
64 TIGR02295 HpaD 3,4-dihydroxyph 99.8 6.5E-19 1.4E-23 118.8 14.3 116 6-130 131-256 (294)
65 cd07261 Glo_EDI_BRP_like_11 Th 99.8 2.2E-18 4.8E-23 101.0 14.4 106 15-129 2-114 (114)
66 TIGR03213 23dbph12diox 2,3-dih 99.8 7.2E-19 1.6E-23 118.2 13.9 108 9-130 1-118 (286)
67 cd07238 Glo_EDI_BRP_like_5 Thi 99.8 1.9E-18 4.1E-23 101.0 13.9 102 14-130 3-111 (112)
68 cd09012 Glo_EDI_BRP_like_24 Th 99.8 1.2E-18 2.7E-23 103.6 13.1 113 12-129 1-123 (124)
69 cd07235 MRD Mitomycin C resist 99.8 2.3E-18 5.1E-23 102.0 13.7 112 12-128 1-121 (122)
70 cd07262 Glo_EDI_BRP_like_19 Th 99.8 1.8E-18 4E-23 102.6 13.2 107 12-128 1-122 (123)
71 TIGR03213 23dbph12diox 2,3-dih 99.8 1.4E-18 3.1E-23 116.8 14.0 113 9-129 140-262 (286)
72 PF12681 Glyoxalase_2: Glyoxal 99.8 1.7E-18 3.7E-23 100.4 12.5 100 17-128 1-108 (108)
73 TIGR02295 HpaD 3,4-dihydroxyph 99.8 3.7E-18 8.1E-23 115.1 13.7 108 8-130 1-115 (294)
74 TIGR03211 catechol_2_3 catecho 99.8 4.6E-18 9.9E-23 115.1 13.9 108 9-131 2-119 (303)
75 cd07251 Glo_EDI_BRP_like_10 Th 99.8 1.8E-17 3.9E-22 97.9 13.0 110 15-129 2-120 (121)
76 PF13669 Glyoxalase_4: Glyoxal 99.8 2.7E-18 5.8E-23 100.1 8.1 93 13-107 1-95 (109)
77 PLN02300 lactoylglutathione ly 99.8 2.9E-17 6.3E-22 110.5 13.7 120 8-131 151-279 (286)
78 KOG2944 Glyoxalase [Carbohydra 99.7 1.6E-16 3.5E-21 95.0 12.3 122 9-131 40-169 (170)
79 COG2514 Predicted ring-cleavag 99.7 2.8E-16 6E-21 101.9 13.1 115 8-131 7-127 (265)
80 COG3565 Predicted dioxygenase 99.7 1.4E-15 3.1E-20 86.4 10.5 112 11-130 4-129 (138)
81 COG3324 Predicted enzyme relat 99.7 1.1E-14 2.5E-19 85.6 13.7 116 8-131 6-126 (127)
82 cd07250 HPPD_C_like C-terminal 99.6 3E-14 6.5E-19 90.7 10.5 100 9-108 1-111 (191)
83 COG3607 Predicted lactoylgluta 99.6 8.1E-14 1.7E-18 80.5 10.7 119 10-132 2-129 (133)
84 TIGR01263 4HPPD 4-hydroxypheny 99.5 1.4E-12 3.1E-17 90.2 12.6 103 6-108 153-266 (353)
85 cd06588 PhnB_like Escherichia 99.5 9.7E-12 2.1E-16 74.4 13.9 108 15-128 3-128 (128)
86 KOG2943 Predicted glyoxalase [ 99.5 6.6E-13 1.4E-17 84.8 8.6 119 9-131 15-144 (299)
87 TIGR01263 4HPPD 4-hydroxypheny 99.5 4.9E-12 1.1E-16 87.5 13.6 97 10-107 1-99 (353)
88 COG0346 GloA Lactoylglutathion 99.4 1E-12 2.3E-17 77.9 7.1 120 10-129 1-138 (138)
89 COG2764 PhnB Uncharacterized p 99.4 1.5E-10 3.3E-15 69.3 13.9 113 15-130 4-131 (136)
90 PLN02875 4-hydroxyphenylpyruva 99.3 2.1E-11 4.5E-16 84.8 9.6 100 8-107 177-293 (398)
91 PRK01037 trmD tRNA (guanine-N( 99.3 1.4E-10 3E-15 78.6 10.7 105 10-130 246-354 (357)
92 COG2514 Predicted ring-cleavag 99.2 2.7E-10 5.9E-15 74.4 10.0 100 7-128 164-264 (265)
93 PF13468 Glyoxalase_3: Glyoxal 99.1 3.9E-10 8.5E-15 70.9 6.9 93 12-104 1-101 (175)
94 KOG0638 4-hydroxyphenylpyruvat 99.0 2E-09 4.3E-14 71.8 8.0 103 7-109 13-120 (381)
95 PF14506 CppA_N: CppA N-termin 99.0 1.5E-07 3.3E-12 54.5 12.7 110 13-131 2-115 (125)
96 KOG2943 Predicted glyoxalase [ 98.9 1.3E-08 2.9E-13 65.5 8.4 112 10-129 148-269 (299)
97 PRK10148 hypothetical protein; 98.9 6.8E-07 1.5E-11 54.7 14.5 109 15-130 5-141 (147)
98 PLN02875 4-hydroxyphenylpyruva 98.8 2.9E-07 6.2E-12 64.5 12.4 119 12-130 1-151 (398)
99 PF14696 Glyoxalase_5: Hydroxy 98.8 5.8E-08 1.3E-12 58.5 7.7 119 5-130 3-126 (139)
100 COG3185 4-hydroxyphenylpyruvat 98.7 1E-07 2.3E-12 64.6 8.1 101 7-107 163-272 (363)
101 PF06983 3-dmu-9_3-mt: 3-demet 98.1 0.00043 9.3E-09 40.7 11.7 96 20-128 11-116 (116)
102 COG3185 4-hydroxyphenylpyruvat 98.1 0.00019 4E-09 49.3 11.0 110 6-122 17-142 (363)
103 PF15067 FAM124: FAM124 family 98.0 0.00021 4.6E-09 46.3 9.5 103 11-127 128-235 (236)
104 KOG0638 4-hydroxyphenylpyruvat 97.9 1.5E-05 3.2E-10 53.7 3.3 103 7-109 174-291 (381)
105 PF13669 Glyoxalase_4: Glyoxal 97.3 0.0014 3.1E-08 37.8 6.1 50 82-131 1-56 (109)
106 PF14507 CppA_C: CppA C-termin 97.0 0.0012 2.7E-08 37.5 3.3 91 11-125 5-98 (101)
107 KOG2944 Glyoxalase [Carbohydra 96.6 0.018 3.8E-07 35.5 6.3 53 10-64 114-167 (170)
108 cd08353 Glo_EDI_BRP_like_7 Thi 96.4 0.024 5.3E-07 34.0 6.6 54 10-64 86-140 (142)
109 cd07249 MMCE Methylmalonyl-CoA 95.7 0.096 2.1E-06 30.4 6.8 46 10-56 71-117 (128)
110 PLN02367 lactoylglutathione ly 95.7 0.11 2.3E-06 34.4 7.3 56 10-67 168-224 (233)
111 cd08352 Glo_EDI_BRP_like_1 Thi 95.7 0.14 3E-06 29.5 7.3 50 80-129 3-57 (125)
112 PRK11478 putative lyase; Provi 95.6 0.17 3.6E-06 29.6 7.5 53 10-63 74-127 (129)
113 cd08342 HPPD_N_like N-terminal 95.6 0.16 3.5E-06 30.3 7.4 58 10-68 68-126 (136)
114 TIGR03645 glyox_marine lactoyl 95.6 0.12 2.6E-06 32.0 7.0 53 79-131 3-78 (162)
115 cd08347 PcpA_C_like C-terminal 95.5 0.12 2.7E-06 31.9 6.7 50 80-130 1-53 (157)
116 cd07242 Glo_EDI_BRP_like_6 Thi 95.0 0.21 4.5E-06 29.2 6.5 50 80-130 1-54 (128)
117 cd07235 MRD Mitomycin C resist 95.0 0.19 4E-06 29.1 6.3 46 81-126 1-46 (122)
118 cd07245 Glo_EDI_BRP_like_9 Thi 94.9 0.2 4.3E-06 28.1 6.2 50 81-130 1-52 (114)
119 PF13468 Glyoxalase_3: Glyoxal 94.9 0.072 1.6E-06 33.4 4.5 50 81-131 1-55 (175)
120 cd08346 PcpA_N_like N-terminal 94.8 0.24 5.3E-06 28.6 6.5 51 80-130 1-60 (126)
121 PF13670 PepSY_2: Peptidase pr 94.8 0.17 3.7E-06 27.7 5.3 40 90-129 30-72 (83)
122 PRK10291 glyoxalase I; Provisi 94.6 0.5 1.1E-05 27.8 7.8 57 10-67 64-122 (129)
123 PF06185 YecM: YecM protein; 94.6 0.69 1.5E-05 29.5 8.2 76 10-89 33-114 (185)
124 cd08348 BphC2-C3-RGP6_C_like T 94.4 0.52 1.1E-05 27.8 7.3 50 81-130 2-54 (134)
125 PLN03042 Lactoylglutathione ly 94.4 0.35 7.6E-06 30.9 6.7 56 10-67 120-176 (185)
126 cd07241 Glo_EDI_BRP_like_3 Thi 94.1 0.62 1.3E-05 26.8 7.1 50 81-130 2-56 (125)
127 COG3865 Uncharacterized protei 94.0 0.83 1.8E-05 27.9 11.9 98 20-128 14-122 (151)
128 cd07252 BphC1-RGP6_N_like N-te 93.8 0.71 1.5E-05 26.8 6.9 48 80-128 2-51 (120)
129 PRK11700 hypothetical protein; 93.7 1.1 2.5E-05 28.5 9.2 77 9-89 37-119 (187)
130 cd06587 Glo_EDI_BRP_like This 93.6 0.45 9.7E-06 26.3 5.7 48 83-131 1-51 (112)
131 cd07255 Glo_EDI_BRP_like_12 Th 93.6 0.8 1.7E-05 26.5 6.9 48 80-129 2-51 (125)
132 cd08344 MhqB_like_N N-terminal 93.3 0.59 1.3E-05 26.7 5.9 28 80-107 2-29 (112)
133 cd07262 Glo_EDI_BRP_like_19 Th 93.1 0.84 1.8E-05 26.4 6.5 48 81-129 1-53 (123)
134 cd07250 HPPD_C_like C-terminal 93.0 0.52 1.1E-05 30.1 5.8 51 80-130 3-63 (191)
135 TIGR03081 metmalonyl_epim meth 92.8 0.83 1.8E-05 26.5 6.2 30 10-40 71-100 (128)
136 cd07263 Glo_EDI_BRP_like_16 Th 92.7 0.83 1.8E-05 25.9 6.1 32 9-41 65-96 (119)
137 cd07233 Glyoxalase_I Glyoxalas 92.5 1.1 2.5E-05 25.6 6.5 31 10-41 69-99 (121)
138 cd07253 Glo_EDI_BRP_like_2 Thi 92.5 1.1 2.3E-05 25.7 6.4 31 79-109 2-33 (125)
139 PF00903 Glyoxalase: Glyoxalas 92.5 0.66 1.4E-05 26.6 5.5 28 80-107 1-29 (128)
140 PF12681 Glyoxalase_2: Glyoxal 91.8 0.83 1.8E-05 25.6 5.2 31 9-40 54-84 (108)
141 TIGR00068 glyox_I lactoylgluta 91.0 2.3 4.9E-05 25.8 7.1 56 10-66 85-142 (150)
142 cd07267 THT_Oxygenase_N N-term 91.0 1.8 4E-05 24.7 7.0 54 10-65 56-110 (113)
143 cd09012 Glo_EDI_BRP_like_24 Th 91.0 2 4.2E-05 24.9 6.6 26 82-107 2-27 (124)
144 cd08360 MhqB_like_C C-terminal 90.9 2.2 4.7E-05 25.3 6.8 50 79-129 2-55 (134)
145 cd07240 ED_TypeI_classII_N N-t 90.8 1.9 4.1E-05 24.4 6.3 39 80-120 2-41 (117)
146 cd08359 Glo_EDI_BRP_like_22 Th 90.0 2.3 5.1E-05 24.3 6.6 25 14-39 69-93 (119)
147 PF02208 Sorb: Sorbin homologo 89.9 0.11 2.5E-06 24.8 0.3 28 7-34 7-34 (47)
148 cd07237 BphC1-RGP6_C_like C-te 89.7 3.2 6.9E-05 25.4 7.2 28 79-106 8-36 (154)
149 cd07257 THT_oxygenase_C The C- 89.7 3.2 7E-05 25.3 7.2 56 10-65 66-125 (153)
150 cd08364 FosX FosX, a fosfomyci 89.7 2.8 6.2E-05 24.7 6.4 28 11-39 66-95 (131)
151 cd08363 FosB FosB, a fosfomyci 89.6 2.9 6.2E-05 24.7 6.5 27 81-107 1-28 (131)
152 cd07238 Glo_EDI_BRP_like_5 Thi 89.5 2.5 5.5E-05 23.9 7.4 28 12-40 58-85 (112)
153 cd07265 2_3_CTD_N N-terminal d 89.4 2.8 6E-05 24.2 6.4 30 79-108 3-33 (122)
154 cd08361 PpCmtC_N N-terminal do 88.7 3.3 7.1E-05 24.1 6.2 47 80-128 6-54 (124)
155 cd07239 BphC5-RK37_C_like C-te 88.5 3.9 8.4E-05 24.7 6.4 28 79-106 3-31 (144)
156 PRK04101 fosfomycin resistance 88.0 4 8.7E-05 24.3 6.9 29 10-39 62-92 (139)
157 cd07247 SgaA_N_like N-terminal 87.9 3.4 7.4E-05 23.3 7.1 31 10-41 60-90 (114)
158 cd08345 Fosfomycin_RP Fosfomyc 87.7 3.3 7.2E-05 23.3 5.6 53 10-63 54-109 (113)
159 cd07268 Glo_EDI_BRP_like_4 Thi 87.5 4.9 0.00011 24.8 10.8 74 12-89 2-81 (149)
160 cd08358 Glo_EDI_BRP_like_21 Th 86.3 5.2 0.00011 23.9 7.4 27 80-106 2-29 (127)
161 cd08351 ChaP_like ChaP, an enz 85.9 5 0.00011 23.2 6.5 48 80-129 4-52 (123)
162 cd07264 Glo_EDI_BRP_like_15 Th 85.6 5 0.00011 23.0 6.9 27 13-40 73-99 (125)
163 cd08362 BphC5-RrK37_N_like N-t 85.3 5 0.00011 22.8 5.8 30 79-108 2-32 (120)
164 cd04882 ACT_Bt0572_2 C-termina 85.2 3.1 6.7E-05 21.0 4.1 25 81-105 40-64 (65)
165 cd07266 HPCD_N_class_II N-term 84.9 5.4 0.00012 22.8 6.3 30 80-109 4-34 (121)
166 cd09013 BphC-JF8_N_like N-term 84.3 5.9 0.00013 22.7 6.1 28 10-37 61-90 (121)
167 cd07246 Glo_EDI_BRP_like_8 Thi 82.2 7.1 0.00015 22.1 7.2 31 10-41 67-97 (122)
168 cd07243 2_3_CTD_C C-terminal d 81.6 9.2 0.0002 23.0 7.0 55 10-64 66-124 (143)
169 cd07244 FosA FosA, a Fosfomyci 80.9 8.4 0.00018 22.1 6.4 28 80-107 1-29 (121)
170 COG0346 GloA Lactoylglutathion 80.8 3.4 7.5E-05 23.4 3.6 28 80-107 2-30 (138)
171 cd08343 ED_TypeI_classII_C C-t 80.8 9 0.0002 22.4 5.7 25 82-106 1-26 (131)
172 PF07063 DUF1338: Domain of un 80.7 2.3 5E-05 29.4 3.1 29 78-106 182-216 (302)
173 cd04883 ACT_AcuB C-terminal AC 80.2 6.4 0.00014 20.3 4.5 27 82-108 43-71 (72)
174 cd04895 ACT_ACR_1 ACT domain-c 80.0 4.6 0.0001 21.6 3.5 35 91-125 15-55 (72)
175 cd07251 Glo_EDI_BRP_like_10 Th 79.9 8.8 0.00019 21.7 5.9 44 84-129 2-46 (121)
176 cd08349 BLMA_like Bleomycin bi 79.8 8.4 0.00018 21.4 6.5 26 10-36 57-82 (112)
177 cd07256 HPCD_C_class_II C-term 79.6 4.1 8.9E-05 25.1 3.8 28 79-106 2-30 (161)
178 PRK06724 hypothetical protein; 77.6 12 0.00027 22.1 6.8 55 10-65 62-123 (128)
179 cd04906 ACT_ThrD-I_1 First of 77.0 7.7 0.00017 21.2 4.0 27 81-107 41-71 (85)
180 cd09011 Glo_EDI_BRP_like_23 Th 76.5 12 0.00026 21.4 7.3 53 10-63 63-117 (120)
181 cd09014 BphC-JF8_C_like C-term 75.8 6.5 0.00014 24.4 3.9 28 79-106 5-33 (166)
182 cd07258 PpCmtC_C C-terminal do 75.5 15 0.00033 22.1 6.9 58 9-66 54-115 (141)
183 COG3254 Uncharacterized conser 69.6 19 0.00042 20.8 4.6 32 93-131 28-59 (105)
184 cd08354 Glo_EDI_BRP_like_13 Th 69.4 18 0.0004 20.4 7.3 46 82-128 2-48 (122)
185 cd07261 Glo_EDI_BRP_like_11 Th 69.1 18 0.00039 20.3 6.3 30 10-40 58-90 (114)
186 cd04908 ACT_Bt0572_1 N-termina 69.0 14 0.0003 18.9 3.7 24 83-106 42-65 (66)
187 cd07254 Glo_EDI_BRP_like_20 Th 66.6 22 0.00047 20.2 7.0 55 10-64 57-116 (120)
188 cd04885 ACT_ThrD-I Tandem C-te 66.3 12 0.00026 19.4 3.1 25 81-105 39-66 (68)
189 cd08355 Glo_EDI_BRP_like_14 Th 65.7 23 0.0005 20.2 7.1 29 11-40 68-96 (122)
190 COG4747 ACT domain-containing 62.8 11 0.00023 22.5 2.6 88 11-107 41-135 (142)
191 cd04897 ACT_ACR_3 ACT domain-c 61.7 22 0.00048 19.1 3.6 35 91-125 15-55 (75)
192 cd08350 BLMT_like BLMT, a bleo 60.6 29 0.00064 19.7 6.4 24 13-37 60-83 (120)
193 PF11080 DUF2622: Protein of u 60.4 21 0.00045 20.4 3.4 28 90-127 22-49 (96)
194 PF11823 DUF3343: Protein of u 57.8 27 0.00059 18.4 4.5 23 84-106 43-67 (73)
195 COG3102 Uncharacterized protei 57.1 48 0.001 21.1 7.3 80 9-94 37-125 (185)
196 COG5397 Uncharacterized conser 57.0 13 0.00027 25.6 2.5 48 84-131 161-212 (349)
197 PF00585 Thr_dehydrat_C: C-ter 56.6 23 0.0005 19.7 3.2 29 79-107 49-80 (91)
198 KOG4657 Uncharacterized conser 55.4 11 0.00023 25.1 1.9 22 20-41 145-166 (246)
199 COG3603 Uncharacterized conser 55.0 17 0.00037 21.6 2.6 24 82-105 103-126 (128)
200 COG1437 CyaB Adenylate cyclase 54.9 54 0.0012 21.0 9.1 77 12-104 78-161 (178)
201 PF14907 NTP_transf_5: Unchara 54.8 59 0.0013 21.4 6.2 46 84-130 97-144 (249)
202 COG3349 Uncharacterized conser 54.6 29 0.00062 26.0 4.2 32 95-126 16-51 (485)
203 PF05336 DUF718: Domain of unk 54.1 41 0.00088 19.4 4.4 33 93-132 27-59 (106)
204 PF13176 TPR_7: Tetratricopept 53.1 13 0.00028 16.4 1.6 20 17-36 10-29 (36)
205 PRK09437 bcp thioredoxin-depen 52.7 50 0.0011 19.9 5.6 51 79-129 63-137 (154)
206 PRK13490 chemoreceptor glutami 52.4 46 0.001 20.9 4.4 39 86-124 109-150 (162)
207 PRK13498 chemoreceptor glutami 52.4 37 0.00081 21.4 4.0 40 85-124 111-153 (167)
208 PRK13494 chemoreceptor glutami 51.6 49 0.0011 20.8 4.4 39 86-124 111-152 (163)
209 PF03975 CheD: CheD chemotacti 51.5 41 0.00088 19.6 3.9 38 88-125 63-103 (114)
210 PRK13495 chemoreceptor glutami 51.5 50 0.0011 20.7 4.4 40 86-125 102-144 (159)
211 PF14696 Glyoxalase_5: Hydroxy 51.1 55 0.0012 20.0 5.9 55 10-65 72-126 (139)
212 TIGR00318 cyaB adenylyl cyclas 50.2 39 0.00085 21.3 3.9 22 84-105 6-27 (174)
213 cd04909 ACT_PDH-BS C-terminal 49.9 22 0.00048 18.1 2.4 22 84-105 45-69 (69)
214 PF13986 DUF4224: Domain of un 49.9 31 0.00067 16.7 3.0 17 94-110 20-36 (47)
215 PF06923 GutM: Glucitol operon 49.2 52 0.0011 19.1 5.0 43 88-131 23-71 (109)
216 PRK13497 chemoreceptor glutami 48.7 58 0.0013 21.0 4.5 39 87-125 110-151 (184)
217 PF10706 Aminoglyc_resit: Amin 48.5 63 0.0014 20.5 4.4 40 84-126 47-86 (174)
218 cd04886 ACT_ThrD-II-like C-ter 48.4 36 0.00078 17.0 3.8 25 82-106 45-72 (73)
219 PF14250 AbrB-like: AbrB-like 47.5 15 0.00032 19.6 1.4 16 27-42 45-60 (71)
220 PRK13491 chemoreceptor glutami 47.2 62 0.0013 21.2 4.4 39 87-125 113-154 (199)
221 PF00379 Chitin_bind_4: Insect 47.1 33 0.00071 16.7 2.6 16 113-128 29-44 (52)
222 PF07494 Reg_prop: Two compone 47.1 22 0.00048 14.2 2.4 13 113-125 7-19 (24)
223 PRK13493 chemoreceptor glutami 46.7 60 0.0013 21.5 4.4 39 86-124 136-177 (213)
224 PF03698 UPF0180: Uncharacteri 46.4 40 0.00086 18.5 3.0 40 86-125 4-49 (80)
225 PF14091 DUF4269: Domain of un 46.4 35 0.00076 21.2 3.1 86 15-106 37-132 (152)
226 PRK13488 chemoreceptor glutami 46.3 66 0.0014 20.1 4.4 39 86-124 104-145 (157)
227 PRK03094 hypothetical protein; 46.2 40 0.00086 18.5 3.0 39 87-125 5-49 (80)
228 PRK06704 RNA polymerase factor 45.9 15 0.00032 24.4 1.6 37 89-127 187-225 (228)
229 TIGR02625 YiiL_rotase L-rhamno 45.2 60 0.0013 18.7 4.7 31 94-131 27-57 (102)
230 PRK10234 DNA-binding transcrip 44.1 42 0.00092 19.9 3.1 43 88-131 24-72 (118)
231 PF00578 AhpC-TSA: AhpC/TSA fa 43.4 62 0.0013 18.4 4.1 47 79-125 58-122 (124)
232 PRK13487 chemoreceptor glutami 42.9 77 0.0017 20.8 4.4 39 86-124 124-165 (201)
233 PF14133 DUF4300: Domain of un 41.6 95 0.0021 21.1 4.8 37 91-127 150-186 (250)
234 PF03432 Relaxase: Relaxase/Mo 40.9 72 0.0016 20.9 4.3 36 87-122 183-218 (242)
235 PRK10562 putative acetyltransf 40.5 79 0.0017 18.7 4.2 29 15-44 100-129 (145)
236 KOG1494 NAD-dependent malate d 39.5 58 0.0013 22.8 3.6 73 16-108 172-245 (345)
237 PRK13489 chemoreceptor glutami 39.5 92 0.002 21.0 4.4 39 86-124 122-163 (233)
238 TIGR00288 conserved hypothetic 39.0 96 0.0021 19.5 4.3 28 79-106 104-133 (160)
239 PF12512 DUF3717: Protein of u 38.7 12 0.00025 20.1 0.2 15 17-31 4-18 (71)
240 PF00583 Acetyltransf_1: Acety 38.5 58 0.0012 16.8 3.0 25 11-36 58-83 (83)
241 PF13508 Acetyltransf_7: Acety 38.4 29 0.00063 18.1 1.8 21 14-37 59-79 (79)
242 COG0456 RimI Acetyltransferase 36.6 55 0.0012 19.9 3.1 28 13-42 127-156 (177)
243 PF13905 Thioredoxin_8: Thiore 36.5 73 0.0016 17.2 5.0 45 80-124 35-95 (95)
244 smart00671 SEL1 Sel1-like repe 35.4 41 0.00088 14.2 1.8 13 20-32 19-31 (36)
245 cd04907 ACT_ThrD-I_2 Second of 35.3 78 0.0017 17.2 3.9 27 81-107 42-70 (81)
246 smart00459 Sorb Sorbin homolog 35.0 22 0.00048 17.5 0.8 21 14-34 14-37 (50)
247 PF09142 TruB_C: tRNA Pseudour 34.9 65 0.0014 16.2 3.5 40 91-131 6-45 (56)
248 PF14883 GHL13: Hypothetical g 33.7 57 0.0012 22.7 2.9 17 90-106 18-34 (294)
249 KOG2792 Putative cytochrome C 33.5 24 0.00053 24.0 1.1 18 111-128 241-258 (280)
250 cd03017 PRX_BCP Peroxiredoxin 33.5 1E+02 0.0022 18.0 5.7 49 80-128 57-126 (140)
251 PRK10629 EnvZ/OmpR regulon mod 33.0 62 0.0013 19.4 2.7 33 89-121 50-84 (127)
252 PF04659 Arch_fla_DE: Archaeal 32.9 41 0.00089 19.3 1.8 20 18-38 33-52 (99)
253 COG1654 BirA Biotin operon rep 32.9 75 0.0016 17.3 2.8 25 86-110 31-55 (79)
254 PF12142 PPO1_DWL: Polyphenol 32.9 68 0.0015 16.2 2.4 16 113-128 10-25 (54)
255 PRK10314 putative acyltransfer 32.8 64 0.0014 19.7 2.9 17 23-40 118-134 (153)
256 PF12687 DUF3801: Protein of u 32.7 1.4E+02 0.0031 19.5 4.6 44 78-121 31-79 (204)
257 COG1871 CheD Chemotaxis protei 32.1 1.4E+02 0.0029 19.0 4.7 39 86-124 111-152 (164)
258 PHA02754 hypothetical protein; 31.9 78 0.0017 16.2 4.1 38 93-130 22-62 (67)
259 PF10023 DUF2265: Predicted am 31.8 1.2E+02 0.0027 21.6 4.3 92 21-120 54-152 (337)
260 KOG2741 Dimeric dihydrodiol de 31.7 24 0.00051 25.1 0.9 85 14-107 35-128 (351)
261 PF13721 SecD-TM1: SecD export 30.4 69 0.0015 18.3 2.5 35 87-121 44-80 (101)
262 PF08379 Bact_transglu_N: Bact 30.3 95 0.0021 16.6 4.2 20 111-130 46-65 (82)
263 PRK10140 putative acetyltransf 29.8 99 0.0021 18.4 3.4 31 11-42 112-143 (162)
264 PF00515 TPR_1: Tetratricopept 29.8 18 0.00039 15.3 0.0 18 19-36 14-31 (34)
265 PLN00139 hypothetical protein; 29.6 48 0.001 23.3 2.1 27 85-111 194-220 (320)
266 PF08445 FR47: FR47-like prote 29.5 1E+02 0.0022 16.7 3.5 19 20-39 63-81 (86)
267 PRK14707 hypothetical protein; 29.4 1E+02 0.0022 28.1 4.0 39 90-128 2357-2404(2710)
268 PRK10146 aminoalkylphosphonic 29.3 58 0.0013 19.0 2.3 28 11-39 109-137 (144)
269 PF07063 DUF1338: Domain of un 29.2 78 0.0017 22.2 3.0 28 10-38 183-216 (302)
270 cd01205 WASP WASP-type EVH1 do 29.0 1E+02 0.0023 17.9 3.1 21 13-33 82-102 (105)
271 PF09299 Mu-transpos_C: Mu tra 28.9 78 0.0017 15.9 2.4 40 82-126 21-60 (62)
272 PF11193 DUF2812: Protein of u 28.7 1.2E+02 0.0026 17.4 4.4 48 82-129 40-91 (115)
273 PF04759 DUF617: Protein of un 28.6 49 0.0011 20.9 1.8 14 111-124 142-155 (166)
274 PF04800 ETC_C1_NDUFA4: ETC co 28.3 1.3E+02 0.0027 17.4 5.4 30 78-107 44-74 (101)
275 PF07411 DUF1508: Domain of un 28.3 72 0.0016 15.5 2.1 17 110-126 3-19 (49)
276 PF12280 BSMAP: Brain specific 28.3 82 0.0018 20.8 2.8 20 111-130 93-112 (207)
277 TIGR01570 A_thal_3588 uncharac 27.8 50 0.0011 20.7 1.7 13 111-123 137-149 (161)
278 PRK14581 hmsF outer membrane N 27.7 76 0.0016 25.0 3.0 16 90-105 335-350 (672)
279 PF15590 Imm15: Immunity prote 27.6 32 0.00069 18.2 0.7 19 111-129 23-42 (69)
280 PF02630 SCO1-SenC: SCO1/SenC; 27.3 64 0.0014 20.3 2.2 19 112-130 155-173 (174)
281 PF15121 TMEM71: TMEM71 protei 27.2 76 0.0016 19.3 2.3 23 97-124 63-85 (149)
282 PF01316 Arg_repressor: Argini 27.1 62 0.0013 17.2 1.8 19 88-106 19-37 (70)
283 PRK10514 putative acetyltransf 27.0 1.4E+02 0.003 17.5 3.9 19 23-42 110-128 (145)
284 PHA02087 hypothetical protein 26.9 1E+02 0.0022 16.3 2.5 18 113-130 45-62 (83)
285 PF09383 NIL: NIL domain; Int 26.6 85 0.0018 16.5 2.4 25 82-106 46-74 (76)
286 cd03008 TryX_like_RdCVF Trypar 26.1 1.7E+02 0.0036 18.0 6.6 47 80-126 65-127 (146)
287 PF00594 Gla: Vitamin K-depend 26.0 70 0.0015 15.0 1.7 14 21-34 29-42 (42)
288 PHA02097 hypothetical protein 25.6 91 0.002 15.5 2.1 13 116-128 45-57 (59)
289 KOG2465 Uncharacterized conser 25.5 68 0.0015 22.6 2.2 20 80-99 168-187 (390)
290 TIGR00545 lipoyltrans lipoyltr 25.5 2.1E+02 0.0046 20.2 4.7 34 95-129 57-90 (324)
291 PF12221 HflK_N: Bacterial mem 25.4 63 0.0014 15.3 1.5 13 88-100 20-32 (42)
292 PF14527 LAGLIDADG_WhiA: WhiA 25.4 1.4E+02 0.0029 16.8 3.7 40 82-121 22-65 (93)
293 PRK10907 intramembrane serine 25.4 94 0.002 21.4 2.9 31 90-120 12-42 (276)
294 PF12021 DUF3509: Protein of u 25.1 1.4E+02 0.003 17.0 3.0 18 107-124 21-38 (94)
295 PF05881 CNPase: 2',3'-cyclic 25.1 58 0.0013 21.6 1.7 69 23-93 84-154 (235)
296 cd03012 TlpA_like_DipZ_like Tl 24.8 1.5E+02 0.0033 17.1 6.4 49 80-128 56-122 (126)
297 COG4832 Uncharacterized conser 24.8 1.1E+02 0.0024 19.7 2.8 34 89-122 159-192 (207)
298 PF13420 Acetyltransf_4: Acety 24.7 1.3E+02 0.0028 17.8 3.2 31 11-42 110-141 (155)
299 PF08238 Sel1: Sel1 repeat; I 24.6 49 0.0011 14.3 1.0 13 20-32 22-34 (39)
300 PTZ00330 acetyltransferase; Pr 24.5 77 0.0017 18.6 2.2 22 17-39 119-140 (147)
301 TIGR02382 wecD_rffC TDP-D-fuco 24.4 1E+02 0.0022 19.4 2.8 27 11-39 156-184 (191)
302 PRK03822 lplA lipoate-protein 24.3 2.5E+02 0.0055 20.0 4.9 34 95-129 58-91 (338)
303 PRK10975 TDP-fucosamine acetyl 24.1 1.3E+02 0.0027 19.0 3.2 30 10-40 158-188 (194)
304 TIGR01575 rimI ribosomal-prote 24.0 1E+02 0.0022 17.4 2.6 30 12-42 88-118 (131)
305 cd00034 ChSh Chromo Shadow Dom 23.8 58 0.0013 16.2 1.3 17 19-35 37-53 (54)
306 PF11520 Cren7: Chromatin prot 23.7 95 0.0021 15.9 2.0 17 110-126 35-52 (60)
307 KOG2003 TPR repeat-containing 23.7 80 0.0017 23.8 2.3 31 9-39 493-523 (840)
308 COG1225 Bcp Peroxiredoxin [Pos 23.5 2E+02 0.0043 18.1 6.0 49 80-128 64-136 (157)
309 PF05593 RHS_repeat: RHS Repea 23.4 89 0.0019 14.0 3.4 24 108-131 12-35 (38)
310 COG1389 DNA topoisomerase VI, 23.3 78 0.0017 23.8 2.2 16 113-128 206-221 (538)
311 smart00300 ChSh Chromo Shadow 23.1 65 0.0014 16.5 1.4 18 19-36 43-60 (61)
312 PF07901 DUF1672: Protein of u 23.1 1.7E+02 0.0038 20.3 3.7 39 23-61 40-78 (277)
313 COG5470 Uncharacterized conser 23.1 1E+02 0.0023 17.5 2.3 20 12-31 53-72 (96)
314 PF07719 TPR_2: Tetratricopept 22.5 78 0.0017 13.0 1.6 19 18-36 13-31 (34)
315 COG4009 Uncharacterized protei 22.4 1.5E+02 0.0033 16.3 3.5 26 81-106 50-77 (88)
316 COG0264 Tsf Translation elonga 22.2 1.4E+02 0.003 20.9 3.1 40 90-129 33-80 (296)
317 PF03367 zf-ZPR1: ZPR1 zinc-fi 22.1 1.3E+02 0.0029 18.8 2.9 15 111-125 144-158 (161)
318 cd02966 TlpA_like_family TlpA- 22.0 1.5E+02 0.0032 16.0 6.5 49 79-127 51-113 (116)
319 PHA01735 hypothetical protein 21.8 84 0.0018 16.7 1.6 20 88-107 32-51 (76)
320 COG0504 PyrG CTP synthase (UTP 21.7 2.7E+02 0.0058 21.3 4.6 30 14-43 375-404 (533)
321 PRK14707 hypothetical protein; 21.3 1.5E+02 0.0031 27.3 3.6 39 90-128 2588-2635(2710)
322 KOG0178 20S proteasome, regula 20.8 1E+02 0.0022 20.5 2.2 15 110-124 142-156 (249)
323 TIGR02540 gpx7 putative glutat 20.8 1.3E+02 0.0029 18.1 2.7 16 115-130 123-138 (153)
324 PRK12332 tsf elongation factor 20.8 1.7E+02 0.0036 19.1 3.2 39 90-128 32-75 (198)
325 COG2896 MoaA Molybdenum cofact 20.7 2.8E+02 0.006 19.8 4.4 43 88-130 202-245 (322)
326 PF07485 DUF1529: Domain of Un 20.7 2E+02 0.0044 17.2 3.3 25 84-108 63-87 (123)
327 PF03793 PASTA: PASTA domain; 20.7 1.3E+02 0.0028 14.9 2.4 17 90-106 10-26 (63)
328 PRK09491 rimI ribosomal-protei 20.7 1.8E+02 0.0038 17.1 3.2 29 11-40 96-125 (146)
329 smart00028 TPR Tetratricopepti 20.5 72 0.0016 11.9 1.2 17 19-35 14-30 (34)
330 PRK15130 spermidine N1-acetylt 20.5 1.7E+02 0.0038 18.1 3.3 31 11-42 116-147 (186)
331 PF12122 DUF3582: Protein of u 20.4 1.6E+02 0.0034 16.9 2.7 29 92-120 14-44 (101)
332 PF11098 Chlorosome_CsmC: Chlo 20.3 1.3E+02 0.0029 17.8 2.4 23 11-33 77-100 (139)
333 PRK09831 putative acyltransfer 20.2 1.3E+02 0.0027 17.9 2.5 19 23-42 110-128 (147)
334 PF13225 DUF4033: Domain of un 20.1 1.5E+02 0.0033 16.5 2.5 18 25-42 49-66 (86)
335 TIGR02652 conserved hypothetic 20.1 30 0.00065 21.2 -0.2 13 117-129 65-77 (163)
336 PF01393 Chromo_shadow: Chromo 20.0 79 0.0017 16.0 1.3 17 20-36 41-57 (58)
No 1
>PRK11478 putative lyase; Provisional
Probab=99.93 E-value=6.9e-24 Score=126.97 Aligned_cols=122 Identities=23% Similarity=0.358 Sum_probs=87.2
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
+.+.+++||+|.|+|++++.+||+++||+++......+........+.. ++..++++....+...... ....++.|++
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~-~~~~g~~hi~ 80 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSR-PEACGLRHLA 80 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCC-CCCCceeEEE
Confidence 5678999999999999999999999999998653221111111112333 4456777654332221111 1234678999
Q ss_pred EEECCHHHHHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEe
Q 032856 86 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~ 129 (132)
|.|+|+++++++|+++|+++... ..+.+.+||.||+||.|||+|
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999997642 246788999999999999987
No 2
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.93 E-value=5.9e-24 Score=129.31 Aligned_cols=121 Identities=21% Similarity=0.343 Sum_probs=89.9
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCC-----------CCceeEEEEe--CCeEEEEEecCCCCCCCC--
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWV--GAEMIHLMELPNPDPLSG-- 73 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~l~~~~~~~~~~~-- 73 (132)
+++++||+|.|+|++++.+||++ |||+...+..... .....+++.. ++..++|+....+.....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999998 9998765433111 1123344443 345788887654432211
Q ss_pred -CCCCCCCceEEEEEECCHHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEEee
Q 032856 74 -RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 74 -~~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
....+.+..|+||.|+|+++++++|+++|+++..++ .+.+.+|++||+|+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 123346788999999999999999999999986532 467889999999999999984
No 3
>PLN02367 lactoylglutathione lyase
Probab=99.92 E-value=3.1e-23 Score=133.32 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=94.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeC-------------------CeEEEEEecCCCC
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-------------------AEMIHLMELPNPD 69 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~ 69 (132)
--.+.|+.|.|+|++++++||+++||++...+.+.+..++..+|+..+ +..++|....+..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 347999999999999999999999999998877766666777777431 2367776544432
Q ss_pred C--CCCCCC----CCCCceEEEEEECCHHHHHHHHHhCCCeEEccCC---CccEEEEeCCCCCeEEEEeeC
Q 032856 70 P--LSGRPE----HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 70 ~--~~~~~~----~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~---~~~~~~~~Dp~G~~iel~~~~ 131 (132)
. ....+. ...+..|+||.|+|+++++++|+++|+++...+. ..+.+|++|||||.|||+|..
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 1 111121 1257899999999999999999999999875442 245789999999999999875
No 4
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.92 E-value=5.1e-23 Score=129.55 Aligned_cols=125 Identities=17% Similarity=0.205 Sum_probs=92.5
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-------------------CCeEEEEEecCC
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-------------------GAEMIHLMELPN 67 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~ 67 (132)
..-.++.|+.|.|.|+++|++||+++|||+...+...+...+..+++.. ++..++|+....
T Consensus 23 ~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~ 102 (185)
T PLN03042 23 TKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWG 102 (185)
T ss_pred CCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCC
Confidence 3456899999999999999999999999999877554454455555542 234677776443
Q ss_pred CCCCC--C----CCCCCCCceEEEEEECCHHHHHHHHHhCCCeEEccCC---CccEEEEeCCCCCeEEEEeeC
Q 032856 68 PDPLS--G----RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 68 ~~~~~--~----~~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~---~~~~~~~~Dp~G~~iel~~~~ 131 (132)
....+ . ......++.|++|.|+|+++++++|+++|+++...+. +.+.+|++||||+.|||++..
T Consensus 103 ~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 103 TESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred CcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 22110 0 1112257899999999999999999999999875432 345678899999999999865
No 5
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.91 E-value=7.8e-23 Score=127.00 Aligned_cols=122 Identities=22% Similarity=0.264 Sum_probs=88.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccC----CC--------------CCCCceeEEEEeCC-eEEEEEecCCCCC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEAR----PH--------------DKLPYRGAWLWVGA-EMIHLMELPNPDP 70 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~----~~--------------~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 70 (132)
.+++||+|.|+|+++|++||+++||++...+. +. .......+++..++ ..++++....+..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57999999999999999999999999875321 10 01113455566543 4688888765433
Q ss_pred CCCCC-CCCCCceEEEEEECCHHHHHHHHHhCCCeEEccC-----C---CccEEEEeCCCCCeEEEEeeC
Q 032856 71 LSGRP-EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----S---GRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 71 ~~~~~-~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~-----~---~~~~~~~~Dp~G~~iel~~~~ 131 (132)
+.... ..+.+..|+||.|+|+++++++|+++|++....+ . +.+.+|++|||||.|||++.+
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 22221 1246789999999999999999999998653221 1 237899999999999999875
No 6
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.91 E-value=8e-23 Score=121.33 Aligned_cols=120 Identities=26% Similarity=0.415 Sum_probs=86.2
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 87 (132)
+.+++||+|.|.|++++++||+++||++................+.. ++..++++........... ....+..|++|.
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~g~~h~~~~ 79 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSY-PEACGLRHLAFS 79 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCC-CcCCCceEEEEE
Confidence 36899999999999999999999999998764322221111122333 4456666654433221111 123567899999
Q ss_pred ECCHHHHHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEe
Q 032856 88 IRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~ 129 (132)
|+|+++++++++++|+++... ..+.+.+|++||+||.|||+|
T Consensus 80 v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 80 VEDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred eCCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 999999999999999987643 235678999999999999986
No 7
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.91 E-value=7.6e-23 Score=121.56 Aligned_cols=117 Identities=23% Similarity=0.318 Sum_probs=84.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeC-CeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 89 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~ 89 (132)
+++||+|.|+|++++++||+++||+++......+..+....|+..+ +..++++......... ......+..|+||.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVG 79 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECC
Confidence 4789999999999999999999999976543222333345666664 4567777543222111 1123356789999996
Q ss_pred ---CHHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEE
Q 032856 90 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 90 ---d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~ 128 (132)
++++++++|+++|+++...+ .+.+.++++|||||.|||.
T Consensus 80 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 80 SKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 58899999999999886533 3445678999999999983
No 8
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.91 E-value=6.8e-23 Score=123.93 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=87.6
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCceEEEEEEC
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIR 89 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~~~v~ 89 (132)
++|++|.|+|++++++||+++|||+.......+ .....++..++..+.+........... ....+.+..|++|.|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~ 78 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVD 78 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeC
Confidence 589999999999999999999999988754422 123344555555565554332221101 0123456789999999
Q ss_pred CHHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEEeeCC
Q 032856 90 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVDG 132 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~~~~~ 132 (132)
|+++++++|+++|+++...+ .+.+.++++||+|+.|||++.++
T Consensus 79 Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 79 DAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred CHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 99999999999999986433 45689999999999999999753
No 9
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.91 E-value=9.2e-23 Score=125.26 Aligned_cols=124 Identities=23% Similarity=0.306 Sum_probs=85.7
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
...++++||.|.|+|++++++||+++|||+.......+......+++..++. ....+........ .....+.++.|++
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~~hi~ 91 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGT-EKYDLGNGFGHIA 91 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCC-CcccCCCceeEEE
Confidence 4578999999999999999999999999998765433332233445544322 1111111111000 1112234678999
Q ss_pred EEECCHHHHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEeeC
Q 032856 86 IAIRDVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|.|+|+++++++|.++|+++...+ .+.+.+||+||+||.|||++..
T Consensus 92 f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 92 IGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred EecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 999999999999999999875433 2346789999999999999864
No 10
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.91 E-value=1e-22 Score=124.11 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=81.5
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCC-ceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 86 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 86 (132)
.+++++||+|.|+|++++.+||+++|||++..+...+... ...+|+..+... +....... ..+++.|+||
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~-h~~~~~~~--------~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKP-HDIAFVGG--------PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCc-ceEEEecC--------CCCCceEEEE
Confidence 4679999999999999999999999999976653222211 134566554332 22222111 1256889999
Q ss_pred EECCHHH---HHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEe
Q 032856 87 AIRDVSK---LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 87 ~v~d~~~---~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~ 129 (132)
.|+|+++ +.++|+++|+++..++ .+.+++||.|||||.|||++
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 9999888 5689999999876433 23578999999999999975
No 11
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.91 E-value=1.8e-22 Score=122.46 Aligned_cols=113 Identities=23% Similarity=0.361 Sum_probs=87.3
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 87 (132)
|+.+++|+.|.|+|++++++||+++||+++..+.. ..+++..++..+.+....... ......+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g~~l~l~~~~~~~----~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNGLWIALNEEKDIP----RNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCCeEEEeeccCCCC----CccCCCCeeEEEEE
Confidence 56789999999999999999999999999876422 346677777666554321111 11123456899999
Q ss_pred EC--CHHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEEee
Q 032856 88 IR--DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 88 v~--d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
++ |+++++++++++|+++...+ .+.+++||+|||||.|||.+.
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 98 99999999999999875432 367999999999999999864
No 12
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.90 E-value=2.1e-22 Score=121.06 Aligned_cols=115 Identities=17% Similarity=0.277 Sum_probs=83.9
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCC-ceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 86 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 86 (132)
|+.+++||+|.|+|++++++||+++||++...+....... ....++..++..+.+.....+ ...++.|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--------~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSL--------QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCC--------CCCCceEEEE
Confidence 4678999999999999999999999999876543321110 111233445555555432111 1135789999
Q ss_pred EEC--CHHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEEee
Q 032856 87 AIR--DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 87 ~v~--d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
.|+ +++++.++|+++|+++.... ..++++||+|||||.|||.+.
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 998 79999999999999876532 246899999999999999864
No 13
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.90 E-value=5.2e-22 Score=117.47 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=84.4
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC----eEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 87 (132)
+.|++|.|+|++++.+||+++||+++.............+++..++ ..+++........ ....+.+..|++|.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~i~~~ 77 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE---PYDNGNGFGHLAFA 77 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC---CcCCCCCeEEEEEE
Confidence 5799999999999999999999999877544333234456666643 3455544322211 11223467899999
Q ss_pred ECCHHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEEE
Q 032856 88 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel~ 128 (132)
|+|+++++++++++|+++...+ .+.+.+||+||+||++||+
T Consensus 78 v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 78 VDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred eCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 9999999999999999987654 3567889999999999984
No 14
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.90 E-value=8.3e-22 Score=117.45 Aligned_cols=110 Identities=18% Similarity=0.269 Sum_probs=83.3
Q ss_pred CceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 6 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 6 ~~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
+.++.++.||.|.|+|++++.+||+++|||++..+.. ..+|+..++....+...... .+..|++
T Consensus 1 ~~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~~~i~l~~~~----------~~~~~ia 64 (124)
T cd08361 1 MIELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARDHTLVYIEGD----------PAEQASG 64 (124)
T ss_pred CceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCccEEEEEEeCC----------CceEEEE
Confidence 3578999999999999999999999999999875432 24667765433333322111 2347899
Q ss_pred EEECC---HHHHHHHHHhCCCeEEccC-------CCccEEEEeCCCCCeEEEEeeC
Q 032856 86 IAIRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 86 ~~v~d---~~~~~~~l~~~g~~~~~~~-------~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|+|+| +++++++++++|+++..++ .+.+.+||+|||||.||++..+
T Consensus 65 f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 65 FELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred EEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 99985 9999999999999876532 3356789999999999998764
No 15
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.90 E-value=8.9e-22 Score=116.82 Aligned_cols=117 Identities=21% Similarity=0.373 Sum_probs=87.4
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 88 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 88 (132)
+.+++|+.|.|+|++++++||+++||++.....+.. ...++..++..+++......... .......+..|++|.+
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~hi~~~~ 75 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGSQKINLHPVGGEFEP-AAGSPGPGSDDLCLIT 75 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCCEEEEEecCCCccCc-CccCCCCCCceEEEEe
Confidence 468999999999999999999999999988754321 23456666666666554332211 1222345678999999
Q ss_pred CC-HHHHHHHHHhCCCeEEccC-------CCccEEEEeCCCCCeEEEEee
Q 032856 89 RD-VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 89 ~d-~~~~~~~l~~~g~~~~~~~-------~~~~~~~~~Dp~G~~iel~~~ 130 (132)
++ +++++++|+++|+++...+ .+++.+||.||+||.||+.++
T Consensus 76 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 76 EPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 84 9999999999999875432 235789999999999999875
No 16
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.90 E-value=4e-22 Score=116.27 Aligned_cols=110 Identities=40% Similarity=0.745 Sum_probs=85.0
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 90 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 90 (132)
++|++|.|+|++++++||+++||++........ ...+|+..++. .+++......... +....+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCC
Confidence 589999999999999999999999987654322 23466777655 6777655443221 2233557899999999
Q ss_pred HHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEE
Q 032856 91 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 127 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel 127 (132)
+++++++++++|+++...+ .+.+++++.||+||.+||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 9999999999999986543 466889999999999996
No 17
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.90 E-value=2.1e-22 Score=120.21 Aligned_cols=119 Identities=20% Similarity=0.414 Sum_probs=86.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCC--CCCCCCceEEEEEE
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR--PEHGGRDRHTCIAI 88 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~hi~~~v 88 (132)
+++|++|.|+|++++++||+++||++..............+++..++..++|............ .....+..|+||.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 5799999999999999999999999987643322334456667777777787654222211100 11235678999999
Q ss_pred CCHHHHHHHHHhCCCeEEcc-C----CCccEEEE--eCCCCCeEEEEe
Q 032856 89 RDVSKLKMILDKAGISYTLS-K----SGRPAIFT--RDPDANALEFTQ 129 (132)
Q Consensus 89 ~d~~~~~~~l~~~g~~~~~~-~----~~~~~~~~--~Dp~G~~iel~~ 129 (132)
+|+++++++|+++|+++... + .+.+.+|+ +||||+.||+.|
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 99999999999999987642 2 23455566 799999999975
No 18
>PLN02300 lactoylglutathione lyase
Probab=99.90 E-value=4.9e-22 Score=133.52 Aligned_cols=121 Identities=25% Similarity=0.325 Sum_probs=88.7
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCce
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDR 82 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~ 82 (132)
+.+.+++|++|.|+|++++++||+++|||+...+...+......+|+..++. .+.+...... .....+.+..
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~----~~~~~~~g~~ 95 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV----DKYDIGTGFG 95 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC----CccccCCCcc
Confidence 5689999999999999999999999999998765433333344566665432 2233221111 1122345678
Q ss_pred EEEEEECCHHHHHHHHHhCCCeEEccC----C-CccEEEEeCCCCCeEEEEeeC
Q 032856 83 HTCIAIRDVSKLKMILDKAGISYTLSK----S-GRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 83 hi~~~v~d~~~~~~~l~~~g~~~~~~~----~-~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|++|.|+|+++++++++++|+++...+ . +.+.+||+||+||.|||++..
T Consensus 96 hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 96 HFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred EEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence 999999999999999999999876432 2 345789999999999999874
No 19
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.89 E-value=6.8e-22 Score=122.13 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=83.9
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeC---CeEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 87 (132)
+++||+|.|+|++++++||+++|||++..... ....++..+ +..+.++...... ......+++.|++|.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~l~Hiaf~ 72 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-----DRVRLEEGGGGPGAVVDVLEEPDQP---RGRPGAGTVHHVAFR 72 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----CEEEEEecCCCCCCEEEEEeCCCCC---CCcccCCceEEEEEE
Confidence 57999999999999999999999999876543 133344433 4466666542211 111223567899999
Q ss_pred ECC---HHHHHHHHHhCCCeEEccC--CCccEEEEeCCCCCeEEEEeeC
Q 032856 88 IRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 88 v~d---~~~~~~~l~~~g~~~~~~~--~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|+| +++++++|+++|+.+.... ...+++||+||+||.|||.+..
T Consensus 73 v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 73 VPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 998 8999999999999764432 3457899999999999999864
No 20
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.89 E-value=1.3e-21 Score=114.82 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=80.7
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 88 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 88 (132)
+++++|+.|.|+|+++|++||++ |||+...+.. ..+|+..++....+....... ..++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTDPFVYVARKGE--------KARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCccEEEEcccCC--------cCcccEEEEEE
Confidence 47899999999999999999999 9998865422 235666543322332221111 14578999999
Q ss_pred CCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCeEEEEee
Q 032856 89 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 89 ~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+|.+++.+.++++|...... +.+.+.+||.||+||.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEec
Confidence 99999999999999976543 4567899999999999999753
No 21
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.89 E-value=7.5e-22 Score=118.68 Aligned_cols=110 Identities=23% Similarity=0.399 Sum_probs=84.2
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC--
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 89 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~-- 89 (132)
|+||.|.|+|++++++||+++||+++....+ ..+++..++..+.+....... .....+++.|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGGTWLALNEEPDIP----RNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCceEEEEEccCCCC----cCCcCccceEEEEEecHH
Confidence 5899999999999999999999999875422 234566776666654432211 1122356789999998
Q ss_pred CHHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEEeeC
Q 032856 90 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|+++++++|+++|+++..++ .+++.+||.|||||.|||.+.+
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 49999999999999876432 3678999999999999998764
No 22
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.89 E-value=1.2e-21 Score=122.12 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=83.9
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 86 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 86 (132)
+.+.+++|++|.|+|++++++||+++|||++.............+|+...+....+....... ...+++.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~------~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPA------GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCC------CCCCCceEEEE
Confidence 568899999999999999999999999999876533222222346666644333332222111 11245789999
Q ss_pred EECCHH---HHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEee
Q 032856 87 AIRDVS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 87 ~v~d~~---~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
.|+|.+ +++++|+++|+++...+ .....+|++||+||.|||.+.
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 998555 77899999999875332 233468999999999999886
No 23
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.89 E-value=1.7e-21 Score=115.48 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=81.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 89 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~ 89 (132)
+++.||+|.|+|+++|++||+++|||++..+... ..+|+..++..+.+.....+ ..+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-----GALYLRMDDRAWRIAVHPGE---------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCCC-----CeEEEEccCCceEEEEEeCC---------CCceeEEEEEEC
Confidence 3689999999999999999999999998654221 34666665544444432221 135679999997
Q ss_pred ---CHHHHHHHHHhCCCeEEccC-------CCccEEEEeCCCCCeEEEEeeC
Q 032856 90 ---DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 90 ---d~~~~~~~l~~~g~~~~~~~-------~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|+++++++|+++|+++...+ .+.+.+||+|||||.|||+..+
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58888999999999987432 3357899999999999998754
No 24
>PRK10291 glyoxalase I; Provisional
Probab=99.89 E-value=7.1e-22 Score=118.41 Aligned_cols=112 Identities=22% Similarity=0.359 Sum_probs=79.9
Q ss_pred EEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCceEEEEEECCH
Q 032856 16 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 91 (132)
Q Consensus 16 ~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 91 (132)
.|.|+|++++++||+++|||+.......+......+++..++. .+++... .. ......+.+..|+||.|+|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~--~~~~~~g~~~~hlaf~V~d~ 76 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYN--WG--VDKYELGTAYGHIALSVDNA 76 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeec--CC--CCCCcCCCCeeEEEEEeCCH
Confidence 3789999999999999999998765544444456666655432 2333211 11 11222345678999999999
Q ss_pred HHHHHHHHhCCCeEEccC----CC-ccEEEEeCCCCCeEEEEeeC
Q 032856 92 SKLKMILDKAGISYTLSK----SG-RPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~----~~-~~~~~~~Dp~G~~iel~~~~ 131 (132)
++++++|+++|+++...+ .+ .+.+|+.|||||.|||++..
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 77 AEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 999999999999876432 23 35678899999999999864
No 25
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.89 E-value=4e-21 Score=114.36 Aligned_cols=113 Identities=28% Similarity=0.369 Sum_probs=83.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 87 (132)
++++||+|.|+|++++++||+++|||++....+ ..+++..++. .+.+...... . .......+..|++|.
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~~~~~l~l~~~~~~--~-~~~~~~~~~~hi~f~ 71 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGGKRPLLVLEEDPDA--P-PAPPGATGLYHFAIL 71 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCCCeEEEEEEeCCCC--C-cccCCCCcEEEEEEE
Confidence 579999999999999999999999999987632 3456666552 3444333221 1 122233567899999
Q ss_pred EC---CHHHHHHHHHhCCCeEEccC--CCccEEEEeCCCCCeEEEEeeC
Q 032856 88 IR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 88 v~---d~~~~~~~l~~~g~~~~~~~--~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|+ ++++++++++++|+++.... ...+++|+.||+||.+||.+..
T Consensus 72 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 72 LPSRADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CCCHHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEec
Confidence 97 58889999999999875432 2347899999999999998754
No 26
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.89 E-value=4.9e-22 Score=122.37 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=80.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCC-CCCceeEEEEeCCe--EEEE--EecCCCCCCCCCCCCCCCceEEE
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAE--MIHL--MELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~--~~~l--~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
+++||+|.|+|+++|++||+++||+++......+ ......+|+..++. .... +.... ...+++.|+|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--------~~~~g~~Hia 72 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ--------GPESGVHHAA 72 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc--------CCCCceeEEE
Confidence 5799999999999999999999999987643322 12235677766431 1100 00000 1136789999
Q ss_pred EEECCHHHHH---HHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEee
Q 032856 86 IAIRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 86 ~~v~d~~~~~---~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
|.|+|++++. ++|+++|+++..++ .....+|++||+||.|||+..
T Consensus 73 f~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 73 FEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred EEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 9999999986 99999999987543 123467999999999999864
No 27
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.88 E-value=3.3e-21 Score=114.40 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=80.2
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CC-eEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GA-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 86 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 86 (132)
+++++|++|.|+|++++++||+++|||+.....+. ..+++.. ++ ....+..... ...+..|++|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~---------~~~~~~hiaf 67 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ-----GRVYLKAWDEFDHHSIVLREA---------DTAGLDFMGF 67 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC-----ceEEEEccCCCcccEEEeccC---------CCCCeeEEEE
Confidence 67999999999999999999999999998764321 1244544 21 1222222111 1245789999
Q ss_pred EEC---CHHHHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEeeC
Q 032856 87 AIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 87 ~v~---d~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
.|+ |+++++++|+++|+++...+ ..++.+||+|||||.|||++..
T Consensus 68 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 68 KVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred EeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 997 88899999999999876432 2357899999999999998753
No 28
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.88 E-value=2.7e-21 Score=114.63 Aligned_cols=110 Identities=20% Similarity=0.287 Sum_probs=81.7
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
+.+.+++|+.|.|+|++++++||+++||+++..+.+ ..+|+...+ ...+.+..... ...++.|++
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~--------~~~~~~h~a 67 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES--------PEAGLGHIA 67 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC--------CCCceEEEE
Confidence 467899999999999999999999999999887533 245665532 11111111111 114678999
Q ss_pred EEEC---CHHHHHHHHHhCCCeEEc---cCCCccEEEEeCCCCCeEEEEee
Q 032856 86 IAIR---DVSKLKMILDKAGISYTL---SKSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 86 ~~v~---d~~~~~~~l~~~g~~~~~---~~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
|.|+ +++++.++++++|+++.. .+..+.++||+|||||.+|++..
T Consensus 68 f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 68 WRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred EEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEe
Confidence 9997 677889999999998743 23457789999999999999864
No 29
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.88 E-value=4.3e-21 Score=114.15 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=80.4
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 87 (132)
-++++|+.|.|+|+++|++||+++||++...... ..+++..++ ..+.+... .. .....|++|.
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~l~~~~~--~~--------~~~~~h~a~~ 65 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG------PFAVVKLDNGVSLDFAQP--DG--------EIPPQHYAFL 65 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC------CEEEEEcCCCcEEEEecC--CC--------CCCcceEEEE
Confidence 3689999999999999999999999999876321 123344433 34444332 10 1335799999
Q ss_pred EC--CHHHHHHHHHhCCCeEEcc-----------CCCccEEEEeCCCCCeEEEEeeC
Q 032856 88 IR--DVSKLKMILDKAGISYTLS-----------KSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 88 v~--d~~~~~~~l~~~g~~~~~~-----------~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
++ |+++++++|+++|+++... ..+.+.+||+|||||.|||++.+
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 97 6999999999999987432 24679999999999999999875
No 30
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.88 E-value=6.6e-21 Score=113.88 Aligned_cols=113 Identities=26% Similarity=0.354 Sum_probs=85.3
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhc---CCeeeccCCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 032856 11 SVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 86 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~l---g~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 86 (132)
+++||.|.|+|++++++||+++| ||+.....+. ...|... ++..+.++........ .......++.|++|
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-----~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-----GRSWRAGDGGTYLVLQQADGESAG-RHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-----CceEEecCCceEEEEEecccCCCc-ccccCCcCeeEEEE
Confidence 57999999999999999999999 9998775421 2234443 5567777765543322 11223456789999
Q ss_pred EEC---CHHHHHHHHHhCCCeEEccC-------CCccEEEEeCCCCCeEEEEe
Q 032856 87 AIR---DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 87 ~v~---d~~~~~~~l~~~g~~~~~~~-------~~~~~~~~~Dp~G~~iel~~ 129 (132)
.|+ |+++++++|+++|+++...+ .+.+.+|++||+||.+||+.
T Consensus 75 ~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 75 RAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 997 58899999999999986532 25689999999999999986
No 31
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.88 E-value=6.3e-21 Score=112.16 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=80.8
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC---eEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 032856 14 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA---EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 90 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 90 (132)
||+|.|.|++++++||+++||+++........ ....+.+..++ ..+++........ ......++..|++|.|+|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~v~d 77 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPAA--MSGLQPGGTPGLVLATDD 77 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCccc--cccccCCCceEEEEEehH
Confidence 89999999999999999999999987644211 22223333322 2344433222211 112234567799999999
Q ss_pred HHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEEEe
Q 032856 91 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel~~ 129 (132)
+++++++++++|+++...+ .+++.+|++||+||.|||+|
T Consensus 78 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 78 IDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 9999999999999887543 35689999999999999975
No 32
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.88 E-value=2.7e-21 Score=119.18 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=82.5
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCC---CCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHD---KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 84 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi 84 (132)
.-++++||+|.|+|++++++||+++||+++....... ......+|+..++....+...... ...++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--------~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGP--------GPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCC--------CCceeEEE
Confidence 3478999999999999999999999999986542211 112355667664432222111111 12568899
Q ss_pred EEEECCHH---HHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEee
Q 032856 85 CIAIRDVS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 85 ~~~v~d~~---~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+|.|+|++ +++++|+++|+++...+ .+.+++|++||+||.|||...
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 99998765 57999999999986532 356889999999999999754
No 33
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.88 E-value=6.6e-21 Score=112.09 Aligned_cols=106 Identities=21% Similarity=0.294 Sum_probs=83.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeC-CeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 88 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 88 (132)
++++|+.|.|+|++++++||+++||+++....+ ..+|+..+ +..+.+.....+ ..+..|++|.|
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~~v 65 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSEDDHHSLVLTEGD---------EPGVDALGFEV 65 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCCCcEEEEEEeCC---------CCCceeEEEEc
Confidence 579999999999999999999999999887543 34677776 344444332221 13578999999
Q ss_pred C---CHHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEEee
Q 032856 89 R---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 89 ~---d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+ ++++++++++++|+++...+ .+.+.+|+.||+||.+|+...
T Consensus 66 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 66 ASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 8 68889999999999986543 456899999999999999864
No 34
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.87 E-value=1.5e-20 Score=110.23 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=82.0
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 90 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 90 (132)
+.|++|.|+|++++++||+++||++...... . ....+++..++ ....++...... ...+...|++|.|+|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~f~v~d 71 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-G--GGDYAVFSTGGGAVGGLMKAPEPA------AGSPPGWLVYFAVDD 71 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-C--CCceEEEEeCCccEEEEecCCCCC------CCCCCeEEEEEEeCC
Confidence 4799999999999999999999999876543 1 12345566654 344444443321 112445789999999
Q ss_pred HHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEEe
Q 032856 91 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~~ 129 (132)
+++++++|+++|+++..++ .+++.++++|||||.|+|+|
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 9999999999999876443 36689999999999999975
No 35
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.87 E-value=7.4e-21 Score=112.82 Aligned_cols=107 Identities=26% Similarity=0.412 Sum_probs=81.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE--
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI-- 88 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v-- 88 (132)
+++|+.|.|+|++++++||+++||+++....+ ..+++..++..+.+...... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~-------~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGDLWLCLSVDANV-------GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCCEEEEEecCCCC-------CCCCCeeeEEEEeCH
Confidence 57899999999999999999999999876433 23556666655444322211 1124568999999
Q ss_pred CCHHHHHHHHHhCCCeEEccC-CCccEEEEeCCCCCeEEEEee
Q 032856 89 RDVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 89 ~d~~~~~~~l~~~g~~~~~~~-~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+|+++++++++++|+++...+ ..+..+||.|||||.|||+.-
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeC
Confidence 489999999999999875533 346799999999999999864
No 36
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.87 E-value=1.2e-20 Score=117.19 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=77.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 89 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~ 89 (132)
++++||+|.|+|++++++||+++|||++......+.......|+..++....+..... .+.++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~---------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGG---------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecC---------CCCceeEEEEEcC
Confidence 6899999999999999999999999998654322222223455554433222221111 1245789999998
Q ss_pred C---HHHHHHHHHhCCCeE--EccC-----CCccEEEEeCCCCCeEEEEee
Q 032856 90 D---VSKLKMILDKAGISY--TLSK-----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 90 d---~~~~~~~l~~~g~~~--~~~~-----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
| +++++++|+++|+.. ...+ .+...+||+||+||.||+++.
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 6 677788999999863 2222 234679999999999999864
No 37
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.87 E-value=1.3e-20 Score=111.52 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=76.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 89 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~ 89 (132)
+++.|+.|.|+|+++|++||+++||+++....+ . .+.+. ++..+++.................+..|++|.|+
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 73 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTFE-GGFALQEGYSWLEGISKADIIEKSNNFELYFEEE 73 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEEe-ccceeccchhhhccCCcccccccCCceEEEEEeh
Confidence 478999999999999999999999999865322 1 11121 2222222110000000011112234579999999
Q ss_pred CHHHHHHHHHhCCC-eEEcc----CCCccEEEEeCCCCCeEEEEee
Q 032856 90 DVSKLKMILDKAGI-SYTLS----KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 90 d~~~~~~~l~~~g~-~~~~~----~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
|+++++++|+++|. ++..+ +.|.+.++|+|||||.|||.+.
T Consensus 74 dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 74 DFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred hhHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 99999999999985 55432 3466899999999999999874
No 38
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.87 E-value=3.2e-20 Score=110.09 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=83.2
Q ss_pred EEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHHH
Q 032856 15 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 94 (132)
Q Consensus 15 v~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~ 94 (132)
-.|.|+|++++++||+++||+++....+.+......+.+..++..+.+.................+..|++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 46899999999999999999999875432222223445666766666654433221110112224457899999999999
Q ss_pred HHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEee
Q 032856 95 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 95 ~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+++++++|+++..+ +.|.+.++++|||||.|+|.++
T Consensus 83 ~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 99999999988643 2467889999999999999864
No 39
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.87 E-value=1.4e-20 Score=113.58 Aligned_cols=109 Identities=19% Similarity=0.319 Sum_probs=79.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 87 (132)
.+++||+|.|+|++++++||+++||++...... ...+|+..++ ....+....... ...++.|++|.
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~-----~~~~~~~~~~~~~~~~i~l~~~~~-------~~~g~~hiaf~ 69 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK-----GRGAFLRAAGGGDHHNLFLIKTPA-------PMAGFHHAAFE 69 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec-----CcEEEEECCCCCCCcEEEEecCCC-------CCCcceEEEEE
Confidence 579999999999999999999999999876432 1346666642 222222211111 12578999999
Q ss_pred ECCHHHHH---HHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEee
Q 032856 88 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 88 v~d~~~~~---~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
|+|++++. ++|+++|+++...+ .+.+.+||+||+||.|||...
T Consensus 70 v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~ 120 (134)
T cd08360 70 VGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGAD 120 (134)
T ss_pred eCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcc
Confidence 99888876 59999999876432 234568999999999999853
No 40
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.87 E-value=1.3e-20 Score=111.37 Aligned_cols=109 Identities=21% Similarity=0.300 Sum_probs=81.1
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 88 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 88 (132)
+.+++|+.|.|+|++++++||+++||++.....+ ..+|+..++...+++...... ..+..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGSEHHILRLRRSD--------RNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCCccEEEEeccCC--------CCCCceEEEEe
Confidence 4689999999999999999999999999875432 235565544333333222111 13467999999
Q ss_pred C---CHHHHHHHHHhCCCeEEccC------CCccEEEEeCCCCCeEEEEeeC
Q 032856 89 R---DVSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 89 ~---d~~~~~~~l~~~g~~~~~~~------~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
+ ++++++++++++|+++..++ .+++.++|.||+||.|||++..
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 4 78999999999999876432 3567899999999999998753
No 41
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.87 E-value=8.4e-21 Score=112.80 Aligned_cols=116 Identities=21% Similarity=0.406 Sum_probs=82.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCC-CceeEEEEe----CCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWV----GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~-~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
+++||+|.|.|++++++||+++||++...+...... .....++.. ++..++++........ ......++.|++
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~hi~ 78 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK--GRRGPGQIHHIA 78 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC--CCCCCCcEEEEE
Confidence 578999999999999999999999998766442221 112233332 2345666654332211 122335578999
Q ss_pred EEEC---CHHHHHHHHHhCCCeEEcc--CCCccEEEEeCCCCCeEEEE
Q 032856 86 IAIR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 86 ~~v~---d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~Dp~G~~iel~ 128 (132)
|.|+ ++++++++++++|+++... ..+.+.+||+||+||.|||+
T Consensus 79 f~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 79 FSVPSEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEcCCHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 9998 5699999999999987543 24678999999999999984
No 42
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.87 E-value=1.3e-20 Score=112.37 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=88.0
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCC-CCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCceEEEEEE
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 88 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~~~v 88 (132)
++||+|.|+|++++++||+++||+++....... ......+++..++..+.++.......... ....+.+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 579999999999999999999999998755432 23345677777777888876544322111 012346788999999
Q ss_pred CCHHHHHHHHHhCCCeEEccC----CCccEEEEeCCC---CCeEEEEe
Q 032856 89 RDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPD---ANALEFTQ 129 (132)
Q Consensus 89 ~d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~---G~~iel~~ 129 (132)
+|+++++++++++|+++...+ .+++.+++.||+ |+.|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999986543 245566666665 99999975
No 43
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.87 E-value=4e-20 Score=111.37 Aligned_cols=113 Identities=25% Similarity=0.371 Sum_probs=82.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeC-C--eEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-A--EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 87 (132)
+++|++|.|+|++++++||+++||+++....+. ...+|+..+ . ..+.++....... .....+..|++|.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~ 72 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFE 72 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEE
Confidence 589999999999999999999999998765431 134566554 2 2455544332211 1223567899999
Q ss_pred ECCHH---HHHHHHHhCCCeEEcc--CCCccEEEEeCCCCCeEEEEeeC
Q 032856 88 IRDVS---KLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 88 v~d~~---~~~~~l~~~g~~~~~~--~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|+|.+ +++++|.++|+++... ..+.+.+|++||+||.|||++..
T Consensus 73 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 73 VDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcC
Confidence 99766 4789999999987643 23468999999999999998754
No 44
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.86 E-value=3.8e-20 Score=110.07 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=76.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCC-----------CCceeEEEEeC----CeEEEEEecCCCCCCCCCC
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVG----AEMIHLMELPNPDPLSGRP 75 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~-----------~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~ 75 (132)
++.|++|.|+|+++|++||+++|||+...+.+.+. ..+..+++..+ +..++|....+.. .+
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~----~~ 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIG----DY 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCC----CC
Confidence 68999999999999999999999999876554333 11122334332 2245554422211 12
Q ss_pred CCCCCceEEEEEECCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEe
Q 032856 76 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 76 ~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~ 129 (132)
..++ .|++|.|++. ++.++|+++|+++...+.+ .+|++||||+.|||+.
T Consensus 78 ~~g~--~~~hlav~~~-d~~~~l~~~Gv~~~~~~~~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 ELGN--DFLGITIHSK-QAVSNAKKHNWPVTEVEDG--VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCC--CEEEEEEECH-HHHHHHHHCCCceecCCCC--EEEEECCCCCEEEEec
Confidence 2222 3677777777 5669999999998876653 7899999999999974
No 45
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.86 E-value=8.7e-22 Score=117.16 Aligned_cols=117 Identities=25% Similarity=0.438 Sum_probs=82.7
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCC--CCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCC-CCCCceEEEEE
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARP--HDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPE-HGGRDRHTCIA 87 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~hi~~~ 87 (132)
+++||+|.|+|++++.+||+++||+++..... .........++..++..+.++............. ......|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 68999999999999999999999999988655 1222234455666666777766655433221110 00134567777
Q ss_pred EC---CHHHHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEE
Q 032856 88 IR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEF 127 (132)
Q Consensus 88 v~---d~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel 127 (132)
+. |+++++++|+++|+++...+ .....+|++||+||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 75 77778999999999886543 234456799999999997
No 46
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.86 E-value=3.8e-20 Score=109.63 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=80.2
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeC--CeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
+++++.|+.|.|+|++++++||+++||+++..... ..+|+... .....+...... ..+..|++
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~hi~ 65 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKAP---------VAGLGHIA 65 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeCC---------CCceeEEE
Confidence 36799999999999999999999999999876432 23455432 122333322111 14578999
Q ss_pred EEEC---CHHHHHHHHHhCCCeEEcc-----CCCccEEEEeCCCCCeEEEEee
Q 032856 86 IAIR---DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 86 ~~v~---d~~~~~~~l~~~g~~~~~~-----~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
|.|. |+++++++++++|+++... +..++++|+.||+||.||++..
T Consensus 66 ~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 66 FRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred EECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 9994 8888999999999987543 2345899999999999999864
No 47
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.86 E-value=7e-20 Score=108.14 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=77.8
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCceEEEEEECCH
Q 032856 14 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 91 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 91 (132)
+..|.|+|++++++||+++|||+.....+ ..+.+..++. .+.+................+...|++|.|+|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 77 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDDV 77 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECCH
Confidence 67899999999999999999999886522 2344555443 344443322211101112223335999999999
Q ss_pred HHHHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEe
Q 032856 92 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 92 ~~~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~ 129 (132)
++++++++++|+++..+ +.+.+.++++||+||.|||+|
T Consensus 78 d~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 78 DAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 99999999999987543 245689999999999999986
No 48
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.86 E-value=1.4e-19 Score=107.09 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=83.3
Q ss_pred EEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHHH
Q 032856 15 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 94 (132)
Q Consensus 15 v~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~ 94 (132)
+.|.|+|++++.+||+++||+++.............+.+..++..+.+........ .......+..|++|.|+|++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~v~d~~~~ 82 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG--SPASWGGTPVSLHLYVEDVDAT 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC--CCCCCCCceEEEEEEeCCHHHH
Confidence 45889999999999999999998875543333334455667777666654332211 0112234467999999999999
Q ss_pred HHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEe
Q 032856 95 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 95 ~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~ 129 (132)
++++.++|+++..+ +.+.+.++++||+||.|+|.+
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 83 FARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 99999999987543 356789999999999999986
No 49
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.86 E-value=3.5e-20 Score=108.46 Aligned_cols=105 Identities=23% Similarity=0.396 Sum_probs=79.1
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC--CH
Q 032856 14 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DV 91 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~--d~ 91 (132)
||.|.|+|++++++||+++||++.....+ ..+++..++..+.+....... ....+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~------~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAGLWICLMEEDSLQ------GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecCeEEEeccCCCcC------CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999876543 235566665554443322111 12245689999995 79
Q ss_pred HHHHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEee
Q 032856 92 SKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 92 ~~~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
++++++++++|+++... ..+++.+|++||+||.|||..-
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 99999999999997642 1257899999999999999864
No 50
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.85 E-value=6.6e-20 Score=111.86 Aligned_cols=108 Identities=16% Similarity=0.292 Sum_probs=79.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 89 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~ 89 (132)
.+++||.|.|+|++++++||+++|||+...... ...+|+..++....+...... ..++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~l~~~~~~~~~~l~~~~---------~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG-----DQMAFLRCNSDHHSIAIARGP---------HPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC-----CeEEEEECCCCcceEEEccCC---------CCceEEEEEECC
Confidence 489999999999999999999999999864321 134566666433333221111 245789999999
Q ss_pred CHHHHH---HHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEeeC
Q 032856 90 DVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 90 d~~~~~---~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|++++. ++|+++|+++...+ .+.+.+||+||+||.|||++..
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 888875 89999999886432 2346689999999999998753
No 51
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=1.3e-19 Score=107.70 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=79.1
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCC--CC----CCCCCCCCCceEEE
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD--PL----SGRPEHGGRDRHTC 85 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~----~~~~~~~~~~~hi~ 85 (132)
+.|+.|.|+|++++++||+++||++........ ....+..++..+.+....... .. +.......+..|++
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESG----DYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIA 76 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCC----cEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEE
Confidence 479999999999999999999999986533211 112233344444444322110 00 01111223346899
Q ss_pred EEECCHHHHHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEee
Q 032856 86 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
|.|+|+++++++++++|+++..+ +.|.+.++++|||||.|||.++
T Consensus 77 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 77 FVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 99999999999999999987543 3456789999999999999874
No 52
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.85 E-value=1e-19 Score=109.36 Aligned_cols=110 Identities=19% Similarity=0.342 Sum_probs=80.5
Q ss_pred eeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHH
Q 032856 13 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 92 (132)
Q Consensus 13 ~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~ 92 (132)
+||.|.|+|++++++||+++||++.......+ .....+|+..++....+....... ..++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHHDLALFPGPE--------RPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcceEEEEcCCC--------CCCeeEEEEEcCCHH
Confidence 59999999999999999999999987654322 223556777655333332222111 256889999999875
Q ss_pred ---HHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEeeC
Q 032856 93 ---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 93 ---~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
+++++++++|+++...+ .+.+.++++||+||.|||.+..
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 67899999999886432 2357889999999999998753
No 53
>PRK06724 hypothetical protein; Provisional
Probab=99.85 E-value=8.4e-20 Score=109.25 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=74.5
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhc---CCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 84 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi 84 (132)
+..+++||.|.|+|+++|++||+++| |++.... .. +..+...+.+....... ....+..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~---------~~-~~~g~~~l~l~~~~~~~------~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE---------VA-YSTGESEIYFKEVDEEI------VRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee---------Ee-eeCCCeeEEEecCCccc------cCCCCceeE
Confidence 46689999999999999999999976 5554321 01 11122233332211110 112457899
Q ss_pred EEEE---CCHHHHHHHHHhCCCeEEccC-------CCccEEEEeCCCCCeEEEEeeC
Q 032856 85 CIAI---RDVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 85 ~~~v---~d~~~~~~~l~~~g~~~~~~~-------~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
||.| +++++++++|+++|+++..++ .+.+++||+|||||.|||..-+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 689999999999999875432 2347889999999999997643
No 54
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.85 E-value=3.1e-19 Score=105.60 Aligned_cols=108 Identities=24% Similarity=0.428 Sum_probs=78.3
Q ss_pred eeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECC--
Q 032856 13 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-- 90 (132)
Q Consensus 13 ~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d-- 90 (132)
.|+.|.|+|++++++||+++||++.....+ . ... +..++..+.+........ . .++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~-~~~~~~~~~~~~~~~~~~----~--~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAK-FLLEDPRLNFVLNERPGA----P--GGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeE-EEecCCceEEEEecCCCC----C--CCCeeEEEEEeCCHH
Confidence 599999999999999999999998866532 1 223 333333444433322211 0 1467899999987
Q ss_pred -HHHHHHHHHhCCCeEEccCC------CccEEEEeCCCCCeEEEEeeCC
Q 032856 91 -VSKLKMILDKAGISYTLSKS------GRPAIFTRDPDANALEFTQVDG 132 (132)
Q Consensus 91 -~~~~~~~l~~~g~~~~~~~~------~~~~~~~~Dp~G~~iel~~~~~ 132 (132)
++++++++.++|+++...+. ..+.+|++||+||.|||++..+
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 119 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTLG 119 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEeec
Confidence 78889999999999865431 2467999999999999998653
No 55
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=1.8e-19 Score=106.63 Aligned_cols=114 Identities=26% Similarity=0.497 Sum_probs=82.9
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCC--CCCCCCCCceEEEEEE
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLS--GRPEHGGRDRHTCIAI 88 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~--~~~~~~~~~~hi~~~v 88 (132)
+.|+.|.|+|++++++||+++|||++..... + ..+++..++ ..+.++......... .......+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED-R----RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC-C----ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 4689999999999999999999999887411 1 346677765 344454433221000 0111235678999999
Q ss_pred C--CHHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEEEee
Q 032856 89 R--DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 89 ~--d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+ |++++++++.++|+++.... .+.+.+|++||+||.|||++.
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 4 89999999999999876543 467899999999999999863
No 56
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.85 E-value=1.4e-19 Score=107.53 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=74.8
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCC---CCCCCCCCCCceEEEE--EE
Q 032856 14 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDP---LSGRPEHGGRDRHTCI--AI 88 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~hi~~--~v 88 (132)
||+|.|+|++++++||+++||+++..... ..+.+..++..+.+........ .........+..|+++ .+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 99999999999999999999999865422 1122333444444433222110 0011112233567654 55
Q ss_pred CCHHHHHHHHHhCCCeEEccC--------CCccEEEEeCCCCCeEEEEee
Q 032856 89 RDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 89 ~d~~~~~~~l~~~g~~~~~~~--------~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+|+++++++|+++|+++..++ .+.+.+|++|||||.|||..+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 799999999999999886432 235889999999999999864
No 57
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.84 E-value=1e-19 Score=123.15 Aligned_cols=114 Identities=18% Similarity=0.310 Sum_probs=79.5
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCc-eeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY-RGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
+.+++++||+|.|+|++++++||+++|||+.......+.... ...|+..+.....+..... + ..+.+.|+|
T Consensus 141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~g~~~Hia 212 (303)
T TIGR03211 141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAFVGD-------P-EPGKLHHVS 212 (303)
T ss_pred cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccceecC-------C-CCCceEEEE
Confidence 457899999999999999999999999999865433222211 3445554332111111100 0 123478999
Q ss_pred EEECCHHH---HHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEE
Q 032856 86 IAIRDVSK---LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 86 ~~v~d~~~---~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~ 128 (132)
|.|+|+++ ++++|+++|+++..++ ...+++||+||+||.|||.
T Consensus 213 f~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 213 FFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred EEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 99996544 6789999999986543 1357899999999999997
No 58
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.84 E-value=3.1e-19 Score=105.65 Aligned_cols=104 Identities=25% Similarity=0.371 Sum_probs=78.4
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHH
Q 032856 14 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 93 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~ 93 (132)
...|.|+|++++++||++ |||+.....+. ..+++..++..+++.......+ .....|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~~~-------~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGDLELHFFAHPDLDP-------ATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCCEEEEEEecCcCCC-------CCCcceEEEEeCCHHH
Confidence 467999999999999999 99998765431 2455666777777765432111 1223579999999999
Q ss_pred HHHHHHhCCCeEE--------cc---CCCccEEEEeCCCCCeEEEEee
Q 032856 94 LKMILDKAGISYT--------LS---KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 94 ~~~~l~~~g~~~~--------~~---~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
++++|+++|+++. .. +.+.+.++++|||||.|||.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 9999999999742 11 2577899999999999999874
No 59
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.83 E-value=4.4e-19 Score=103.85 Aligned_cols=104 Identities=23% Similarity=0.321 Sum_probs=71.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCceEE--EE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHT--CI 86 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hi--~~ 86 (132)
++++||+|.|+|++++++||+ .|||++....+ . .++.. +.....+...... ...+.|+ .+
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 63 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD------G-LELRTAGNDHRWARLLEGA---------RKRLAYLSFGI 63 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------c-eEEEecCCCceEEEeecCC---------CCceeeEEEEe
Confidence 368999999999999999997 69999875421 1 22333 3222222111111 1224444 44
Q ss_pred EECCHHHHHHHHHhCCCeEEccC--CCccEEEEeCCCCCeEEEEee
Q 032856 87 AIRDVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 87 ~v~d~~~~~~~l~~~g~~~~~~~--~~~~~~~~~Dp~G~~iel~~~ 130 (132)
.++|+++++++++++|+++...+ .+.+.+||.||+||.|||..-
T Consensus 64 ~~~d~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 64 FEDDFAAFARHLEAAGVALAAAPPGADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred EhhhHHHHHHHHHHcCCceecCCCcCCCCEEEEECCCCCEEEEecC
Confidence 55799999999999999876543 345789999999999999853
No 60
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.83 E-value=2.4e-19 Score=108.97 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=77.5
Q ss_pred eeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCceEEEEEECCH
Q 032856 13 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 91 (132)
Q Consensus 13 ~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 91 (132)
+||+|.|+|++++.+||+++|||+...+.. ...+|+...+. ..+.+.... ...+++.|++|.|+|.
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~-----~~~~~l~~~~~~~~h~~~~~~--------~~~~gl~Hiaf~v~~~ 67 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE-----DRIVFMRCHPNPFHHTFAVGP--------ASSSHFHHVNFMVTDI 67 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC-----CEEEEEEcCCCCCcceeeecc--------CCCCceEEEEEECCCH
Confidence 599999999999999999999999876532 14566665432 223322111 1236789999999865
Q ss_pred ---HHHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEee
Q 032856 92 ---SKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 92 ---~~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
++++++|+++|+++..++ .+.+.+||+||+|+.|||...
T Consensus 68 ~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~ 114 (141)
T cd07258 68 DDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFG 114 (141)
T ss_pred HHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeC
Confidence 456999999999876432 356789999999999998753
No 61
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.83 E-value=8.5e-19 Score=102.25 Aligned_cols=105 Identities=30% Similarity=0.470 Sum_probs=79.4
Q ss_pred EEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHHHH
Q 032856 16 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 95 (132)
Q Consensus 16 ~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~~ 95 (132)
.|.|+|++++++||+++|||+....... ...+++..++..+++......... ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPE----PGYAFLSRGGAQLMLSEHDGDEPV-----PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCC----CcEEEEEeCCEEEEEeccCCCCCC-----CCCCcEEEEEEeCCHHHHH
Confidence 6899999999999999999998775431 134556667767777654332211 2234568999999999999
Q ss_pred HHHHhCCCe-EEcc----CCCccEEEEeCCCCCeEEEEe
Q 032856 96 MILDKAGIS-YTLS----KSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 96 ~~l~~~g~~-~~~~----~~~~~~~~~~Dp~G~~iel~~ 129 (132)
++++++|++ +..+ +.+.+.++++||+|+.|||.|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 999999998 4332 245689999999999999976
No 62
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.83 E-value=4.6e-19 Score=102.48 Aligned_cols=108 Identities=30% Similarity=0.442 Sum_probs=85.0
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHH
Q 032856 14 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 93 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~ 93 (132)
|++|.|+|++++.+||+++||++....... .....+++..++..+++....+.... ....+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHH
Confidence 899999999999999999999998876542 22355666666667777766543221 233567899999999999
Q ss_pred HHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEE
Q 032856 94 LKMILDKAGISYTLSK----SGRPAIFTRDPDANALEF 127 (132)
Q Consensus 94 ~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel 127 (132)
++++|.++|+.+...+ .+.+.+++.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 9999999999876543 467999999999999986
No 63
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=5.1e-19 Score=103.79 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=75.5
Q ss_pred EEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHHH
Q 032856 15 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 94 (132)
Q Consensus 15 v~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~ 94 (132)
..|.|+|++++++||++ |||+.....+ ..+++..++..+.+........ ....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~~~l~l~~~~~~~~--------~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGNCAFYLQDYYVKDW--------AENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCCEEEEeecCCCccc--------ccCCEEEEEECCHHHH
Confidence 45889999999999988 9999987532 3467777776665543221111 1235799999999999
Q ss_pred HHHHHhCCCeEE---------ccCCCccEEEEeCCCCCeEEEEe
Q 032856 95 KMILDKAGISYT---------LSKSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 95 ~~~l~~~g~~~~---------~~~~~~~~~~~~Dp~G~~iel~~ 129 (132)
+++|+++|+++. ..+.+.+.++|+|||||.|+|.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998642 12357799999999999999865
No 64
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.82 E-value=6.5e-19 Score=118.79 Aligned_cols=116 Identities=26% Similarity=0.398 Sum_probs=80.4
Q ss_pred CceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 6 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 6 ~~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
.+.+++++||+|.|+|+++|++||+++||++...............|+..++....+.. .. ..+.++.|+|
T Consensus 131 ~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~Hia 201 (294)
T TIGR02295 131 GVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIAL-TN--------GNGPRLHHIA 201 (294)
T ss_pred CccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEe-ec--------CCCCceeeEE
Confidence 35678999999999999999999999999998765432222223445544322111111 11 1125689999
Q ss_pred EEECCHH---HHHHHHHhCCCe--EEccC-----CCccEEEEeCCCCCeEEEEee
Q 032856 86 IAIRDVS---KLKMILDKAGIS--YTLSK-----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 86 ~~v~d~~---~~~~~l~~~g~~--~~~~~-----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
|.|+|.+ ++.++|+++|++ +...+ .+...+|++||+||.|||++.
T Consensus 202 f~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 202 YWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred EEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 9999854 568999999987 43332 134578999999999999864
No 65
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=2.2e-18 Score=101.00 Aligned_cols=106 Identities=22% Similarity=0.264 Sum_probs=77.5
Q ss_pred EEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECC---
Q 032856 15 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 90 (132)
Q Consensus 15 v~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d--- 90 (132)
+.|.|+|+++|++||+++||+++....+ ..+.+.. ++..+.++....... ......+..|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP------TFALFVLGSGVKLGLWSRHTVEP---ASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC------ceEEEEeCCCcEEEEeeccccCC---CCCCCCCceEEEEEcCCHHH
Confidence 5789999999999999999999776432 2234454 455666665433221 11123456899999985
Q ss_pred HHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEEEe
Q 032856 91 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel~~ 129 (132)
++++++++.++|+++..++ ..++.++|+|||||.|||+.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 8888999999999887543 34578999999999999963
No 66
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.82 E-value=7.2e-19 Score=118.22 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=81.3
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 88 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v 88 (132)
+.+++|++|.|+|+++|++||+++|||+...+.. . ...|+..+...+.+.....+. .++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSRAHRIAVHPGES---------DDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCCceEEEEEECCc---------CCeeeEeeee
Confidence 4689999999999999999999999998765322 1 234567754333343322221 3467899999
Q ss_pred CC---HHHHHHHHHhCCCeEEccC-------CCccEEEEeCCCCCeEEEEee
Q 032856 89 RD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 89 ~d---~~~~~~~l~~~g~~~~~~~-------~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+| ++++.++|+++|+++...+ ...+.++|.|||||.+||+..
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence 98 8888999999999876432 346789999999999999863
No 67
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.82 E-value=1.9e-18 Score=101.01 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=73.9
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC---eEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 032856 14 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA---EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 90 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 90 (132)
+..|.|+|++++++||+++|||+...... ..+++..++ ..+.+...... +....|++|.|+|
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~v~d 67 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDHG------WIATFASPQNMTVQVSLATEGGT---------ATVVPDLSIEVDD 67 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcCC------ceEEEeecCCCCcEEEEecCCCC---------CCCCCEEEEEeCC
Confidence 34689999999999999999999864311 233344422 23333322111 1224689999999
Q ss_pred HHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEEee
Q 032856 91 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+++++++|+++|+++...+ .+.+.+|+.||+||.|+|.+.
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 9999999999999976533 355789999999999999875
No 68
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=1.2e-18 Score=103.60 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=76.4
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeC-CeEEEEEecCCCC---CCCCCCCCCCCceEEEEE
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPD---PLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~~~~~~~~~~hi~~~ 87 (132)
+.+++|.|+|+++|++||++ |||+.......+. .+++..+ +..+.+....... ..........+..|++|.
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~ 75 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLS 75 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEe
Confidence 46899999999999999987 8998765333221 2344444 3455555432110 000000122345699999
Q ss_pred EC---CHHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEEEe
Q 032856 88 IR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 88 v~---d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel~~ 129 (132)
|+ ++++++++++++|+++..++ .+.+.+||+|||||.|||+.
T Consensus 76 v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 76 ADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 98 57788999999999886543 24468899999999999975
No 69
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.81 E-value=2.3e-18 Score=102.04 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=75.2
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeC-CeEEEEEecCCCCC-CCCCCCCCCCceEEEEEEC
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDP-LSGRPEHGGRDRHTCIAIR 89 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~~~~~~~~~hi~~~v~ 89 (132)
++||+|.|+|+++|++||+. |||+....... ...+.+..+ +..+.+........ ....+....+..|++|.++
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 57999999999999999975 99987653321 123445554 44444432211100 0011112234468888875
Q ss_pred ---CHHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEE
Q 032856 90 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 90 ---d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~ 128 (132)
|+++++++|+++|+++...+ .+.+.++++|||||.|||+
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 89999999999999865432 4567899999999999997
No 70
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.81 E-value=1.8e-18 Score=102.63 Aligned_cols=107 Identities=23% Similarity=0.319 Sum_probs=74.5
Q ss_pred eeeEEEEeCCHHHHHHHHHhh---cCCeeeccCCCCCCCceeEEEEeC--CeEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 032856 12 VHHVGILCENLERSLEFYQNI---LGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 86 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~---lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 86 (132)
++|+.|.|+|++++++||+++ ||++...... . ..+++..+ +..+.+....... .....+..|++|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~hi~f 70 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGGGPDFWVTKPFDGE-----PATAGNGTHVAF 70 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCCCceEEEeccccCC-----CCCCCCceEEEE
Confidence 579999999999999999998 6888765431 1 12333333 3455554432211 111233579999
Q ss_pred EECC---HHHHHHHHHhCCCeEEccC-------CCccEEEEeCCCCCeEEEE
Q 032856 87 AIRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 87 ~v~d---~~~~~~~l~~~g~~~~~~~-------~~~~~~~~~Dp~G~~iel~ 128 (132)
.|+| ++++++++.++|+.+...+ .+.+.+||+||+||.|||+
T Consensus 71 ~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 71 AAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred ECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 9996 7888999999999876432 1235789999999999986
No 71
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.81 E-value=1.4e-18 Score=116.77 Aligned_cols=113 Identities=15% Similarity=0.246 Sum_probs=80.7
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCC-C--ceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-P--YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
..+++||+|.|+|++++.+||+++|||+.......... + ...+|+..++....+.....+ ...++.|++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~--------~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGP--------SEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCC--------CCCceEEEE
Confidence 56899999999999999999999999998764321111 1 135677665443323221111 125688999
Q ss_pred EEECCHHH---HHHHHHhCCCeEEc-cC---CCccEEEEeCCCCCeEEEEe
Q 032856 86 IAIRDVSK---LKMILDKAGISYTL-SK---SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 86 ~~v~d~~~---~~~~l~~~g~~~~~-~~---~~~~~~~~~Dp~G~~iel~~ 129 (132)
|+|+|.++ +.++|+++|+.... +. .+..++|++||+|+.||+.+
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 99998777 79999999993322 11 35678999999999999975
No 72
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.81 E-value=1.7e-18 Score=100.42 Aligned_cols=100 Identities=28% Similarity=0.536 Sum_probs=72.3
Q ss_pred EEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCceEEEEEECCHH
Q 032856 17 ILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 92 (132)
Q Consensus 17 i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~ 92 (132)
|.|+|++++++||+++||+++....+ ..+.+..+.. ...+...... .....+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPDP------PGPPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEESS------SSSSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCcc------ccCCCceeEEEEEEcCHH
Confidence 68999999999999999999998433 2344454321 1223322211 112356789999999999
Q ss_pred HHHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEE
Q 032856 93 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 93 ~~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~ 128 (132)
+++++++++|+++..+ +.+.+.+++.||+||.|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 9999999999987543 34679999999999999985
No 73
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.80 E-value=3.7e-18 Score=115.10 Aligned_cols=108 Identities=21% Similarity=0.272 Sum_probs=80.7
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeC-C-eEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-A-EMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
++.+++||.|.|+|++++++||+++|||++..... ..+++... . ....+.....+ ..++.|++
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~---------~~~~~hia 65 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKAP---------SAALSYIG 65 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeCC---------CcCccEEE
Confidence 36799999999999999999999999999876532 23445432 1 12222221111 13578999
Q ss_pred EEEC---CHHHHHHHHHhCCCeEEcc--CCCccEEEEeCCCCCeEEEEee
Q 032856 86 IAIR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 86 ~~v~---d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
|.|+ |+++++++|+++|+++... +.+.+.+||+|||||.|||++.
T Consensus 66 f~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 66 FRVSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred EEeCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEc
Confidence 9997 7888999999999987653 3456899999999999999863
No 74
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.80 E-value=4.6e-18 Score=115.14 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=79.9
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CC-eEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GA-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 86 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 86 (132)
+++++|+.|.|+|++++++||+++||+++..+.. ..+++.. ++ ....+..... ...++.|++|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~---------~~~g~~hiaf 66 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG------QRVYLKAWDEWDHYSVILTEA---------DTAGLDHMAF 66 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC------ceEEEEeccccccceEeeccC---------CCCceeEEEE
Confidence 6789999999999999999999999999876533 1234443 21 1122221111 1245789999
Q ss_pred EEC---CHHHHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeEEEEeeC
Q 032856 87 AIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 87 ~v~---d~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
.|+ |+++++++|+++|+++...+ ..++.+||.||+||.|||.+..
T Consensus 67 ~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~ 119 (303)
T TIGR03211 67 KVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEK 119 (303)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEcc
Confidence 998 78889999999999876432 3468899999999999999753
No 75
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=1.8e-17 Score=97.87 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=77.3
Q ss_pred EEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCceEEEEEE---C
Q 032856 15 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI---R 89 (132)
Q Consensus 15 v~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~~~v---~ 89 (132)
|.|.|+|++++.+||+++||+++..... ...+++..++..++++.......... ....+.+..|+++.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-----DGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-----CceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 6899999999999999999999876511 13456666776777765432111000 111222334566665 5
Q ss_pred CHHHHHHHHHhCCCeEEccC----CCccEEEEeCCCCCeEEEEe
Q 032856 90 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~~~----~~~~~~~~~Dp~G~~iel~~ 129 (132)
|++++++++++.|+++...+ .+++.++++||+||+|||..
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 89999999999999886432 35789999999999999975
No 76
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.77 E-value=2.7e-18 Score=100.14 Aligned_cols=93 Identities=26% Similarity=0.400 Sum_probs=76.6
Q ss_pred eeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 032856 13 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 90 (132)
Q Consensus 13 ~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 90 (132)
+||+|.|+|+++|++||+++||+.+......+....+.+++..++ ..++|++..++..... ..+.+++|+||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~--~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLD--RGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHH--HTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccc--cCCCCEEEEEEEeCC
Confidence 699999999999999999999999877666556667788888877 4889998777652211 256889999999999
Q ss_pred HHHHHHHHHhCCCeEEc
Q 032856 91 VSKLKMILDKAGISYTL 107 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~ 107 (132)
++++.++|+++|+++..
T Consensus 79 ~d~~~~~l~~~G~~~~~ 95 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLD 95 (109)
T ss_dssp HHHHHHHHHHTTECEEE
T ss_pred HHHHHHHHHHCCCEEcc
Confidence 99999999999998754
No 77
>PLN02300 lactoylglutathione lyase
Probab=99.77 E-value=2.9e-17 Score=110.46 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=86.1
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe----EEEEEecCCCCCCCCCCCCCCCceE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRH 83 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~h 83 (132)
...++.|+.|.|+|++++.+||+++|||+.......+...+..+++..++. .+++..... ...+..+.+..|
T Consensus 151 ~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~----~~~~~~g~~~~~ 226 (286)
T PLN02300 151 TPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYG----VTEYTKGNAYAQ 226 (286)
T ss_pred CCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCC----CCccccCCceeE
Confidence 345789999999999999999999999998764433333444555544221 233322111 112223456779
Q ss_pred EEEEECCHHHHHHHHHhCCCeEEccC---CC--ccEEEEeCCCCCeEEEEeeC
Q 032856 84 TCIAIRDVSKLKMILDKAGISYTLSK---SG--RPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 84 i~~~v~d~~~~~~~l~~~g~~~~~~~---~~--~~~~~~~Dp~G~~iel~~~~ 131 (132)
++|.|+|+++++++++++|+++..++ ++ .+.++|.||+|+.++|++..
T Consensus 227 i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 227 IAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred EEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 99999999999999999999887543 22 47889999999999999864
No 78
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.6e-16 Score=95.04 Aligned_cols=122 Identities=18% Similarity=0.288 Sum_probs=84.1
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCC----CCCCCC-CCceE
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS----GRPEHG-GRDRH 83 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~-~~~~h 83 (132)
+.++.|+.+.+++.-+...||..+||.+.....+.+..+.. +|+......+++...-+..+.+ ...+.. .+..|
T Consensus 40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgH 118 (170)
T KOG2944|consen 40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGH 118 (170)
T ss_pred hhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecccCceeeecCCCCCCCcchhhcCCCCCCCccce
Confidence 34566666666666666777777677765555444433333 6667766667775544433322 122333 48899
Q ss_pred EEEEECCHHHHHHHHHhCCCeEEccCC-C--ccEEEEeCCCCCeEEEEeeC
Q 032856 84 TCIAIRDVSKLKMILDKAGISYTLSKS-G--RPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 84 i~~~v~d~~~~~~~l~~~g~~~~~~~~-~--~~~~~~~Dp~G~~iel~~~~ 131 (132)
|||.|+|++++.++|+++|+++...+. | ...+|+.||||+.||+....
T Consensus 119 Ici~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 119 ICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred EEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeecC
Confidence 999999999999999999999876543 2 35789999999999998654
No 79
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.73 E-value=2.8e-16 Score=101.90 Aligned_cols=115 Identities=24% Similarity=0.376 Sum_probs=88.4
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCceEEEE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCI 86 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 86 (132)
.-+.+..+.|.|+|++.++.||++++|+++..+.. ..+-+..++. .+.|.+..+... .+....++.|++|
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~~LL~L~q~~~a~~---~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGTPLLTLEQFPDARR---PPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCEEEEEEEeCCCCCC---CCccccceeeeee
Confidence 34678999999999999999999999999998766 3455777776 333333333221 1234477899999
Q ss_pred EEC---CHHHHHHHHHhCCCeEE--ccCCCccEEEEeCCCCCeEEEEeeC
Q 032856 87 AIR---DVSKLKMILDKAGISYT--LSKSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 87 ~v~---d~~~~~~~l~~~g~~~~--~~~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
.++ |+..+..++.+.|+.+. .++..+.++||.||+||-||++...
T Consensus 78 LlP~r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 78 LLPTREDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred ecCCHHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEecC
Confidence 999 67777889999999985 2445789999999999999998753
No 80
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=86.38 Aligned_cols=112 Identities=26% Similarity=0.436 Sum_probs=76.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCC---CCC-CCCCCceEEE-
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS---GRP-EHGGRDRHTC- 85 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~~~~hi~- 85 (132)
.+-|++|.|+|++++++||.++||++...+.+ .|+..+-.-++++....+.... ++- +..--+.|++
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 46799999999999999999999999887655 3444433323333333222111 111 1122234555
Q ss_pred -EEECCHHHHHHHHHhCCCeEEccC--------CCccEEEEeCCCCCeEEEEee
Q 032856 86 -IAIRDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 86 -~~v~d~~~~~~~l~~~g~~~~~~~--------~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+.++|.-++.+||+++|+.+..+| ...+.+|+.||.||.+|+...
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 455699999999999999875433 457899999999999998754
No 81
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.67 E-value=1.1e-14 Score=85.62 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=81.4
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC-eEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 86 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~~ 86 (132)
+...+.|..|.|.|++++++||.++|||........ .....+.+..++ ...-.+..... ... +.....+.|
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~--~~~~y~~f~~~~~~~gG~l~~~~~-----~~p-~~~~~~iy~ 77 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDM--GEMRYAVFPADGAGAGGGLMARPG-----SPP-GGGGWVIYF 77 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccC--CCceEEEEECCCccccceeccCCc-----CCC-CCCCEEEEE
Confidence 345688999999999999999999999998875332 112333333332 11111111111 111 133457889
Q ss_pred EECCHHHHHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEeeC
Q 032856 87 AIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 87 ~v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
.|+|+++..+|..++|.++..+ +++++.+.+.||+||+|.|.+..
T Consensus 78 ~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 78 AVDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred ecCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 9999999999999999988754 34789999999999999998754
No 82
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.59 E-value=3e-14 Score=90.67 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=71.0
Q ss_pred eeeeeeEEEEeC--CHHHHHHHHHhhcCCeeeccCCCCC--CCceeEEEEeCC--eEEEEEecCCCCCC--CC---CCCC
Q 032856 9 VVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWVGA--EMIHLMELPNPDPL--SG---RPEH 77 (132)
Q Consensus 9 ~~~~~hv~i~v~--d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~---~~~~ 77 (132)
+.+++||++.|+ |++++.+||+++|||+......... .+.....+..++ ..+.|.....+... .. ....
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 368999999999 9999999999999999877544322 333445555533 45556554432111 00 1123
Q ss_pred CCCceEEEEEECCHHHHHHHHHhCCCeEEcc
Q 032856 78 GGRDRHTCIAIRDVSKLKMILDKAGISYTLS 108 (132)
Q Consensus 78 ~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~ 108 (132)
+.|+.|+||.|+|+++++++|+++|+++...
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~ 111 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPI 111 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccC
Confidence 5788999999999999999999999988543
No 83
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.58 E-value=8.1e-14 Score=80.46 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=80.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCC---CCCCCCceEEEE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR---PEHGGRDRHTCI 86 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~hi~~ 86 (132)
+.+..|+|+|+|++++++||.. ||++.......+. ..+.+..++.-..|...........+ ......-.-+|+
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~l 77 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISL 77 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEe
Confidence 3567899999999999999998 8999877654333 33444445545555543333222111 122334456888
Q ss_pred EEC---CHHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEEEeeCC
Q 032856 87 AIR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVDG 132 (132)
Q Consensus 87 ~v~---d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel~~~~~ 132 (132)
.+. +++++.++..++|.+...++ ......-|.|||||.||+..+++
T Consensus 78 s~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 78 SAGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred ccCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeCH
Confidence 887 56777899999999874433 34567789999999999988763
No 84
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.48 E-value=1.4e-12 Score=90.16 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=71.4
Q ss_pred CceeeeeeeEEEEeC--CHHHHHHHHHhhcCCeeeccCCCC--CCCceeEEEEe--CCeEEEEEecCCCCCCC--C---C
Q 032856 6 DYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHD--KLPYRGAWLWV--GAEMIHLMELPNPDPLS--G---R 74 (132)
Q Consensus 6 ~~~~~~~~hv~i~v~--d~~~~~~fy~~~lg~~~~~~~~~~--~~~~~~~~~~~--~~~~~~l~~~~~~~~~~--~---~ 74 (132)
.+.+.+++||++.|. |++++..||+++|||+.....+.. ..+.....+.. ++..+.|.+........ . .
T Consensus 153 ~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~ 232 (353)
T TIGR01263 153 GVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLE 232 (353)
T ss_pred CCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHH
Confidence 356889999999999 999999999999999887543321 12222223332 33466665532221111 1 1
Q ss_pred CCCCCCceEEEEEECCHHHHHHHHHhCCCeEEcc
Q 032856 75 PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 108 (132)
Q Consensus 75 ~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~ 108 (132)
...+.|+.||||.|+|+++++++|+++|+++...
T Consensus 233 ~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~ 266 (353)
T TIGR01263 233 FYNGAGVQHIALNTDDIVRTVRALRARGVEFLDT 266 (353)
T ss_pred HcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcC
Confidence 1235788999999999999999999999987643
No 85
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.47 E-value=9.7e-12 Score=74.37 Aligned_cols=108 Identities=18% Similarity=0.133 Sum_probs=74.7
Q ss_pred EEEEe-CCHHHHHHHHHhhcCCeeeccCCC----------CCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceE
Q 032856 15 VGILC-ENLERSLEFYQNILGLEINEARPH----------DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 83 (132)
Q Consensus 15 v~i~v-~d~~~~~~fy~~~lg~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~h 83 (132)
..|.+ .|.++|.+||+++||+++...... .......+.+.+++..+.+......... ..+...+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~-----~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF-----TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC-----CCCCCEE
Confidence 35667 899999999999999998765431 1122345667778877766654332211 1233457
Q ss_pred EEEEECC---HHHHHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEE
Q 032856 84 TCIAIRD---VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 84 i~~~v~d---~~~~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~ 128 (132)
+++.|+| +++++++|.+.| ++..+ +.+.+..+++||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 8999986 667788987777 54432 35778999999999999873
No 86
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=6.6e-13 Score=84.85 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=94.3
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCC-----------CCceeEEEEeCCeEEEEEecCCCCCCCCCCCC
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEH 77 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 77 (132)
-.++-|+++.|.|.++++.||+++||+++....+.+. ..+.-+++..|...-|++.....+.....+..
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 3578899999999999999999999999987555443 44556667778777777777777777778888
Q ss_pred CCCceEEEEEECCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEeeC
Q 032856 78 GGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 78 ~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
+++..|+++.++|+-...+.++..|.+ ..+.-.++++||||+.|+|.+..
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v~~p~~~----~~g~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKVNAPGGK----GSGCGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHhcCcCCc----ccceEEEEEECCCCcEEEEeccC
Confidence 888999999999988888877776542 22445678999999999998643
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.46 E-value=4.9e-12 Score=87.54 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=71.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCC--CCCCCCceEEEEE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR--PEHGGRDRHTCIA 87 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~hi~~~ 87 (132)
++++||.|.|+|++++.+||.+.||++.......... ...+.++.|+..+.+............ ..++.++.|+||.
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~-~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~ 79 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHRE-KASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFR 79 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCc-eeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEE
Confidence 4689999999999999999999999998875221111 133345667777777765443321111 1346778999999
Q ss_pred ECCHHHHHHHHHhCCCeEEc
Q 032856 88 IRDVSKLKMILDKAGISYTL 107 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~~ 107 (132)
|+|++++++++.++|+++..
T Consensus 80 V~Dv~~a~~~l~~~Ga~~v~ 99 (353)
T TIGR01263 80 VDDAAAAFEAAVERGAEPVQ 99 (353)
T ss_pred ECCHHHHHHHHHHCCCEecc
Confidence 99999999999999998754
No 88
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.41 E-value=1e-12 Score=77.92 Aligned_cols=120 Identities=22% Similarity=0.351 Sum_probs=72.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCce-eEEEEeCCe--EEEEEecCC------CCCCCCC--CCC-
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYR-GAWLWVGAE--MIHLMELPN------PDPLSGR--PEH- 77 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~-~~~~~~~~~--~~~l~~~~~------~~~~~~~--~~~- 77 (132)
++++||+|.|+|++++++||+++||++............. ...+..... ......... ....... ...
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 4789999999999999999999999999886553322110 111111110 001100000 0000000 011
Q ss_pred C-CCceEEEEEECC---HHHHHHHHHhCCCeEEccC--CCccEEEEeCCCCCeEEEEe
Q 032856 78 G-GRDRHTCIAIRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 78 ~-~~~~hi~~~v~d---~~~~~~~l~~~g~~~~~~~--~~~~~~~~~Dp~G~~iel~~ 129 (132)
. .+..|+++.+++ ...........|..+.... .....+|+.||||+.||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 1 246789999998 6666677777788765432 12228999999999999974
No 89
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.36 E-value=1.5e-10 Score=69.28 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=83.0
Q ss_pred EEEEeC-CHHHHHHHHHhhcCCeeeccCCCCC----------CCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceE
Q 032856 15 VGILCE-NLERSLEFYQNILGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 83 (132)
Q Consensus 15 v~i~v~-d~~~~~~fy~~~lg~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~h 83 (132)
-.|..+ |.++|.+||+++||.+......... .....+-+.+++..+.+........ ....++....
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~---~~~~~~~s~~ 80 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMG---ATEGGGTSLS 80 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccC---cccCCCeeEE
Confidence 356778 9999999999999999887666444 3455666788877666654333221 1111223346
Q ss_pred EEEEECCHHHHHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEee
Q 032856 84 TCIAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 84 i~~~v~d~~~~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+.+.++|++.+++++.+.|+++..+ ..+.+...++||.|+.|-|...
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~ 131 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTP 131 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecC
Confidence 7788889999999999999887654 3588999999999999998764
No 90
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.32 E-value=2.1e-11 Score=84.81 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=73.2
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCC-----CCceeEEEEeCC--eEEEEEecCCC---CCCCCC---
Q 032856 8 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----LPYRGAWLWVGA--EMIHLMELPNP---DPLSGR--- 74 (132)
Q Consensus 8 ~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~l~~~~~~---~~~~~~--- 74 (132)
.+.+++||++.|.+++.+..||+++|||+.....+.+. .+..+..+..++ ..+.|.++... .+....
T Consensus 177 gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~ 256 (398)
T PLN02875 177 GLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLE 256 (398)
T ss_pred CcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHH
Confidence 47799999999999999999999999998876444322 223555566644 45666665432 111111
Q ss_pred CCCCCCceEEEEEECCHHHHHHHHHhC----CCeEEc
Q 032856 75 PEHGGRDRHTCIAIRDVSKLKMILDKA----GISYTL 107 (132)
Q Consensus 75 ~~~~~~~~hi~~~v~d~~~~~~~l~~~----g~~~~~ 107 (132)
...+.|+.||||.|+|+.++.++|+++ |+++..
T Consensus 257 ~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~ 293 (398)
T PLN02875 257 HNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMP 293 (398)
T ss_pred hcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCC
Confidence 133578999999999999999999999 998765
No 91
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.26 E-value=1.4e-10 Score=78.64 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=68.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 89 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~ 89 (132)
-+..||+|.|+|+++|++||+++|++.. ...+ . ..+ + ++. +..+....++. ....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde--~---a~c-m--~dt-I~vMllt~~D~------~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD--K---LFL-L--GKT-SLYLQQTKAEK------KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC--c---ccc-c--cCc-EEEEEecCCCC------CCcceEEEEeccC
Confidence 3567999999999999999999988885 3322 1 111 1 333 22222222211 1123345899998
Q ss_pred ---CHHHHHHHHHhCCCeEEccC-CCccEEEEeCCCCCeEEEEee
Q 032856 90 ---DVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 90 ---d~~~~~~~l~~~g~~~~~~~-~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+++++.++..++|.+....+ +.+..--|.||||+.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFPLRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccCcceeECCCCCEEEEEEE
Confidence 46666888889998654332 333477899999999999864
No 92
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.21 E-value=2.7e-10 Score=74.38 Aligned_cols=100 Identities=21% Similarity=0.228 Sum_probs=72.8
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCC-CCCCCceEEE
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP-EHGGRDRHTC 85 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~hi~ 85 (132)
+.-+.|+||.|.|.|+++|.+||++.|||+...+.+ ...|+..|++++|+..-.......... ....++..+.
T Consensus 164 p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~ 237 (265)
T COG2514 164 PAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLE 237 (265)
T ss_pred CCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEE
Confidence 446789999999999999999999999999998733 457788899988887655544333332 3456778888
Q ss_pred EEECCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEE
Q 032856 86 IAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~ 128 (132)
+.+++-.......... +||.|+.+.+.
T Consensus 238 i~~~~~~~l~~~~~~~----------------~Dp~G~~i~~~ 264 (265)
T COG2514 238 IHTPDPEKLDATGTRL----------------TDPWGIVIRVV 264 (265)
T ss_pred EEcCCcccccccccce----------------ecCCCceEEEe
Confidence 8888744432211111 89999988874
No 93
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.11 E-value=3.9e-10 Score=70.92 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=59.1
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCC--CCC------CCCCCceE
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS--GRP------EHGGRDRH 83 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~------~~~~~~~h 83 (132)
|+|+.+.|+|++++.++|.+.|||.+.........+...+.+.+++..++++......... ... ..+.++..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999998889999988777666677777778877799998864332211 111 24678889
Q ss_pred EEEEECCHHHHHHHHHhCCCe
Q 032856 84 TCIAIRDVSKLKMILDKAGIS 104 (132)
Q Consensus 84 i~~~v~d~~~~~~~l~~~g~~ 104 (132)
+|+.++|+++..++|++.|+.
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-E
T ss_pred EEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999985
No 94
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.03 E-value=2e-09 Score=71.77 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=71.6
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCc--eeEEEEeCCeEEEEEecCCCCCCC---CCCCCCCCc
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY--RGAWLWVGAEMIHLMELPNPDPLS---GRPEHGGRD 81 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~ 81 (132)
-.+.+++||.+.|.|...+..||+..|||++........... ....++.|.....+...-++.... ....++.++
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccch
Confidence 568899999999999999999999999999987553222111 112234444333333333332211 122456677
Q ss_pred eEEEEEECCHHHHHHHHHhCCCeEEccC
Q 032856 82 RHTCIAIRDVSKLKMILDKAGISYTLSK 109 (132)
Q Consensus 82 ~hi~~~v~d~~~~~~~l~~~g~~~~~~~ 109 (132)
.-+||+|+|++++.+.+.++|+++..++
T Consensus 93 kdvafeVeD~da~~~~~va~Ga~v~~~p 120 (381)
T KOG0638|consen 93 KDVAFEVEDADAIFQEAVANGAKVVRPP 120 (381)
T ss_pred hceEEEecchHHHHHHHHHcCCcccCCc
Confidence 8899999999999999999999886554
No 95
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.95 E-value=1.5e-07 Score=54.49 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=62.2
Q ss_pred eeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCC--eEEEEEecCCCCCCCCCCCCCCCceEEEEEECC
Q 032856 13 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 90 (132)
Q Consensus 13 ~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d 90 (132)
.+-+|.|+|-+...+||++.|||+...+.. ..+++.... .++.|-+.+.. ....-.....+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~--rtr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSM--RTRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TT--T-B--SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCcc--ccccccCcceeeEEEEEcCC
Confidence 466899999999999999999999987643 334444432 24444443332 21122333557889999998
Q ss_pred HHHHHHHHHhCCCeEE--ccCCCccEEEEeCCCCCeEEEEeeC
Q 032856 91 VSKLKMILDKAGISYT--LSKSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~--~~~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
..++.+ |.++|.++. -....++.|-..+|+|+.|.+...+
T Consensus 74 ~~EIe~-LLar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 74 PKEIEA-LLARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHHHHH-HHHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HHHHHH-HHhcccccceeEEcCCceEEEEECCCCCEEEEEEcC
Confidence 766544 344454432 2233567888899999999987654
No 96
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=1.3e-08 Score=65.48 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=72.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 87 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~~~ 87 (132)
-.+..|.+.|.|+++++.||+++||+++...... ...+.+..++. .++|....+.. ....+.+-..+++-
T Consensus 148 ~pv~~V~l~VgdL~ks~kyw~~~lgM~ilekeek----~t~~~mgYgd~q~~LElt~~~~~i----d~~kg~griafaip 219 (299)
T KOG2943|consen 148 DPVLQVMLNVGDLQKSIKYWEKLLGMKILEKEEK----YTRARMGYGDEQCVLELTYNYDVI----DRAKGFGRIAFAIP 219 (299)
T ss_pred CCeEEEEEEehhHHHHHHHHHHHhCcchhhhhhh----hhhhhhccCCcceEEEEEeccCcc----cccccceeEEEecc
Confidence 4578899999999999999999999999874221 12334555554 44444433322 12222223334444
Q ss_pred ECCHHHHHHHHHhCCCeEE----c--cC--CCccEEEEeCCCCCeEEEEe
Q 032856 88 IRDVSKLKMILDKAGISYT----L--SK--SGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~----~--~~--~~~~~~~~~Dp~G~~iel~~ 129 (132)
.+++..+.+.+++.+-++. . .| -..+.+.+.||||+.+.|+-
T Consensus 220 ~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVd 269 (299)
T KOG2943|consen 220 TDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVD 269 (299)
T ss_pred ccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEec
Confidence 5588888888888754442 1 22 24578899999999999874
No 97
>PRK10148 hypothetical protein; Provisional
Probab=98.87 E-value=6.8e-07 Score=54.70 Aligned_cols=109 Identities=13% Similarity=0.002 Sum_probs=69.9
Q ss_pred EEEEeC-CHHHHHHHHHhhcCCeeeccCC---C-----------------CCCCceeEEEEeCCeEEEEEecCCCCCCCC
Q 032856 15 VGILCE-NLERSLEFYQNILGLEINEARP---H-----------------DKLPYRGAWLWVGAEMIHLMELPNPDPLSG 73 (132)
Q Consensus 15 v~i~v~-d~~~~~~fy~~~lg~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (132)
..|..+ |.++|.+||+++||.+...... . .......+.+.+++..+.+.......
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~---- 80 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG---- 80 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc----
Confidence 345564 8999999999999988754321 0 11233456677887655543321111
Q ss_pred CCCCCCCceEEEEEECCHHH---HHHHHHhCCCeEEcc----CCCccEEEEeCCCCCeEEEEee
Q 032856 74 RPEHGGRDRHTCIAIRDVSK---LKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 74 ~~~~~~~~~hi~~~v~d~~~---~~~~l~~~g~~~~~~----~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
.. .....++++.++|.++ ++++| +.|.++..+ ..+.+...++||.|+.|.|...
T Consensus 81 -~~-~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 -KA-HYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred -CC-CCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 11 1124578888888877 45555 467766543 3567888999999999998754
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.80 E-value=2.9e-07 Score=64.48 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=77.8
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCC--CceeEEEEeCCeEEEEEecCCCCC------------CC---CC
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKL--PYRGAWLWVGAEMIHLMELPNPDP------------LS---GR 74 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~------------~~---~~ 74 (132)
++||.+.|.|..++..||+..|||........... ......++.|+..+.+.....+.. .+ ..
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999988765442111 122334555665655555432210 00 00
Q ss_pred ------CCCCCCceEEEEEECCHHHHHHHHHhCCCeEEccCCC---------ccEEEEeCCCCCeEEEEee
Q 032856 75 ------PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSG---------RPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 75 ------~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~---------~~~~~~~Dp~G~~iel~~~ 130 (132)
..++.++.-++|+|+|.+++++++.++|.+....+.+ ....-+.-++|..+-|++.
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr 151 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY 151 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc
Confidence 1346778899999999999999999999886543211 1233355566666666553
No 99
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.79 E-value=5.8e-08 Score=58.49 Aligned_cols=119 Identities=12% Similarity=0.084 Sum_probs=74.2
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCce
Q 032856 5 GDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDR 82 (132)
Q Consensus 5 ~~~~~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~ 82 (132)
+++.+.++.||.+.|.|.+++..+++ .|||+...+.... .+..++-|+..+.|-.. +..... ...++.++.
T Consensus 3 nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~rQG~I~~vln~e--p~s~a~~~~~~HG~sv~ 75 (139)
T PF14696_consen 3 NPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYRQGDINFVLNSE--PDSFAAEFAAQHGPSVC 75 (139)
T ss_dssp -TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEEETTEEEEEEEE--STSCHHHHHHHHSSEEE
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEEeCCEEEEEeCC--CcchHHHHHHhcCCEEE
Confidence 46788999999999999888888875 5999998865422 23445667766666432 221111 113467788
Q ss_pred EEEEEECCHHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEEEee
Q 032856 83 HTCIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 83 hi~~~v~d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel~~~ 130 (132)
-++|.|+|.++++++..++|.+....+ .....--++.++|.++-|++.
T Consensus 76 aiafrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 76 AIAFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp EEEEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE-
T ss_pred EEEEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEec
Confidence 999999999999999999999865432 222333555566666655553
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.72 E-value=1e-07 Score=64.60 Aligned_cols=101 Identities=15% Similarity=0.217 Sum_probs=68.8
Q ss_pred ceeeeeeeEEEEe--CCHHHHHHHHHhhcCCeeeccCCC--CCCCceeEEEEeCCeEEEE--EecCCCCCCCC---CCCC
Q 032856 7 YGVVSVHHVGILC--ENLERSLEFYQNILGLEINEARPH--DKLPYRGAWLWVGAEMIHL--MELPNPDPLSG---RPEH 77 (132)
Q Consensus 7 ~~~~~~~hv~i~v--~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~---~~~~ 77 (132)
..+..++|++..| ..++.+..||+++|+|+.....+- +..+..+-.+......+.| -...+..+... ....
T Consensus 163 ~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~ 242 (363)
T COG3185 163 VGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYR 242 (363)
T ss_pred cCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhC
Confidence 3457899999887 599999999999999998765443 3333333334333333333 22222222111 1135
Q ss_pred CCCceEEEEEECCHHHHHHHHHhCCCeEEc
Q 032856 78 GGRDRHTCIAIRDVSKLKMILDKAGISYTL 107 (132)
Q Consensus 78 ~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~ 107 (132)
+.|+.||+|.++|+-++.++++++|+++..
T Consensus 243 G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ 272 (363)
T COG3185 243 GEGIQHIAFGTDDIYATVAALRERGVKFLP 272 (363)
T ss_pred CCcceEEEecccHHHHHHHHHHHcCCccCC
Confidence 788999999999999999999999998754
No 101
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=98.07 E-value=0.00043 Score=40.69 Aligned_cols=96 Identities=19% Similarity=0.099 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHhhcCCee-eccCCC------CCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCHH
Q 032856 20 ENLERSLEFYQNILGLEI-NEARPH------DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 92 (132)
Q Consensus 20 ~d~~~~~~fy~~~lg~~~-~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~ 92 (132)
.+.+.|.+||.++||-.. ...... .......+.+.+++..+......... .. +.-.++++.++|.+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~~----~~---~~~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPDF----PF---GNNISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS-----------TTEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCCC----CC---CCcEEEEEEcCCHH
Confidence 689999999999998432 221111 12233456678888777665544111 11 22367888888776
Q ss_pred HH---HHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEE
Q 032856 93 KL---KMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 93 ~~---~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~ 128 (132)
++ .++|.+.|- + ......++|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~-----~-~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ-----W-FSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE-----T-CCEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC-----c-cceeEEEEeCCCCEEEeC
Confidence 65 667766665 3 336779999999999875
No 102
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.05 E-value=0.00019 Score=49.25 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=73.5
Q ss_pred CceeeeeeeEEEEeCCH-HHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCC--CCCCCCCce
Q 032856 6 DYGVVSVHHVGILCENL-ERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDR 82 (132)
Q Consensus 6 ~~~~~~~~hv~i~v~d~-~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~ 82 (132)
++...++.+|.+.|.|. ++...++.. |||......... ....++-|+.. ++....+.+... ...++.+..
T Consensus 17 P~~~~GfeFvEf~~~d~~~~l~~l~~~-lGF~~~~~Hrsk----~v~l~rQGdin--lvvn~~~~s~a~~f~~~Hgps~~ 89 (363)
T COG3185 17 PEGTDGFEFVEFAVPDPQEALGALLGQ-LGFTAVAKHRSK----AVTLYRQGDIN--LVVNAEPDSFAAEFLDKHGPSAC 89 (363)
T ss_pred CCCCCceeEEEEecCCHHHHHHHHHHH-hCcccccccccc----ceeEEEeCCEE--EEEcCCCcchhhHHHHhcCCchh
Confidence 45578999999999999 566666655 999887654422 12223446544 443333332211 224567778
Q ss_pred EEEEEECCHHHHHHHHHhCCCeEEccC-------------CCccEEEEeCCCC
Q 032856 83 HTCIAIRDVSKLKMILDKAGISYTLSK-------------SGRPAIFTRDPDA 122 (132)
Q Consensus 83 hi~~~v~d~~~~~~~l~~~g~~~~~~~-------------~~~~~~~~~Dp~G 122 (132)
-++|.|+|.+.++++.+++|.+....+ .++..+||-|..|
T Consensus 90 a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 90 AMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred eeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 899999999999999999998542211 2577889988883
No 103
>PF15067 FAM124: FAM124 family
Probab=97.96 E-value=0.00021 Score=46.32 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=61.5
Q ss_pred eeeeEEEEeC--CHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe---CCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 11 SVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV---GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 11 ~~~hv~i~v~--d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
.+-.++|.|+ |.+.+++||+-+|+-++..... ..+++.+ .+..+.+....-+... .+. ...-.-+.
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~------~FC~F~lys~~~~~iQlsLK~lp~~~--~p~-p~esavLq 198 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE------DFCFFTLYSQPGLDIQLSLKQLPPGM--SPE-PTESAVLQ 198 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC------CcEEEEEecCCCeEEEEEeccCCCCC--Ccc-cccceEEE
Confidence 4667888998 9999999999999999877654 2233333 2334444442221111 111 11224489
Q ss_pred EEECCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEE
Q 032856 86 IAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 127 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel 127 (132)
|.|.|+.++..-|-.--.++.... --.+|||||.|=|
T Consensus 199 F~V~~igqLvpLLPnpc~PIS~~r-----WqT~D~DGNkILL 235 (236)
T PF15067_consen 199 FRVEDIGQLVPLLPNPCSPISETR-----WQTEDYDGNKILL 235 (236)
T ss_pred EEecchhhhcccCCCCcccccCCc-----ceeeCCCCCEecc
Confidence 999999887654332222222222 2458999998743
No 104
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.87 E-value=1.5e-05 Score=53.74 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=69.6
Q ss_pred ceeeeeeeEEEEeC--CHHHHHHHHHhhcCCeeeccCCCCCCCc-----eeEEEEeCCeEEEEEecCCCCCCCC------
Q 032856 7 YGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPY-----RGAWLWVGAEMIHLMELPNPDPLSG------ 73 (132)
Q Consensus 7 ~~~~~~~hv~i~v~--d~~~~~~fy~~~lg~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~------ 73 (132)
+.+..++|++..++ .++.+.+||.+.|||...+..+...... +.+.+...+..+.+......+....
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqe 253 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQE 253 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHH
Confidence 56789999999998 7889999999999999888766433221 1111222233333222111111111
Q ss_pred --CCCCCCCceEEEEEECCHHHHHHHHHhCCCeEEccC
Q 032856 74 --RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK 109 (132)
Q Consensus 74 --~~~~~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~ 109 (132)
.+..+.|+.|+++.++|+-++.+.++++|.++..+|
T Consensus 254 yv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~P 291 (381)
T KOG0638|consen 254 YVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPP 291 (381)
T ss_pred HHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCC
Confidence 124578899999999999999999999999986443
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=97.31 E-value=0.0014 Score=37.79 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=38.9
Q ss_pred eEEEEEECCHHHHHHHHHh-CCCeEEc----cCCCccEEEEeCCCC-CeEEEEeeC
Q 032856 82 RHTCIAIRDVSKLKMILDK-AGISYTL----SKSGRPAIFTRDPDA-NALEFTQVD 131 (132)
Q Consensus 82 ~hi~~~v~d~~~~~~~l~~-~g~~~~~----~~~~~~~~~~~Dp~G-~~iel~~~~ 131 (132)
+|++|.|+|++++.+.+.+ .|+.... .+.+.+..++..++| ..|||+++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 8986542 233456677888888 689999864
No 106
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.97 E-value=0.0012 Score=37.51 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=42.3
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEEC-
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 89 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~- 89 (132)
.+..+.|.|.| +++++||+++|+-... ..+.+.+..+++... .+...=.+..+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~~-------------------~~l~f~ea~G~DL~~-~~~~twDLe~Lkf~V~~ 63 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQLP-------------------FFLTFQEAQGPDLTI-ENNETWDLEMLKFQVPK 63 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHHT-------------------TTEEEEE---CCGSS--TTSBSSEEEEEEEES-
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCCC-------------------ceEEEeeccCCcccc-CCCcEEeeEEEEEEecC
Confidence 45678999999 8899999998862221 123333333332211 1111233567888998
Q ss_pred --CHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeE
Q 032856 90 --DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 125 (132)
Q Consensus 90 --d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~i 125 (132)
|+.++.++|.+.++ - .+...+.+...||.|..+
T Consensus 64 ~~Dl~~L~~~le~~~~--f-idKk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 64 DFDLAALKSHLEEQEF--F-IDKKEKFLVTSDPSQIEL 98 (101)
T ss_dssp S--HHHHHHHTTTS-E--E---TT-SEEEEE-TTS-EE
T ss_pred cccHHHHHHHhcccce--E-ecCCceEEEEECCcceEE
Confidence 78888889888333 2 223456788899998754
No 107
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.018 Score=35.47 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=37.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEe
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 64 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 64 (132)
++++||.|.|+|+.++..-+++ .|.+.....+.... -..+|+.. +++.+++..
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk~-K~iaF~~dpDgywiei~~ 167 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGKM-KPIAFLHDPDGYWIEIEL 167 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCccc-cceeEEECCCCCeEEEee
Confidence 6899999999999999999988 79996665443332 23444444 445666543
No 108
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=96.43 E-value=0.024 Score=33.98 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=36.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEe
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 64 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 64 (132)
.++.|+++.|.|++++.+...+ .|.+..........+.+.+++.- ++..++|++
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 4688999999999999999988 69887764322222334455554 344566654
No 109
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=95.75 E-value=0.096 Score=30.44 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=31.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCC-CCCCCceeEEEEeC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARP-HDKLPYRGAWLWVG 56 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~-~~~~~~~~~~~~~~ 56 (132)
.++.|+++.|.|++++.+..++ .|.++..... ....+....++..+
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~d~~ 117 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKA-QGVRLLQEGPRIGAGGKRVAFLHPK 117 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeeeccCCCccCCCCEEEEEecC
Confidence 5678999999999999999988 6888766433 22333344444444
No 110
>PLN02367 lactoylglutathione lyase
Probab=95.72 E-value=0.11 Score=34.43 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=39.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEecCC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 67 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 67 (132)
.+++||+|.|.|++++.+-.++ .|.+....... ......+|+.- ++..++|++...
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~-g~~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPND-GKMKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCcc-CCceEEEEEECCCCCEEEEEeccc
Confidence 4799999999999999999987 89988753321 11124455544 566888877544
No 111
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.69 E-value=0.14 Score=29.52 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=35.6
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEccC---C-CccEEEEeCCCCCeEEEEe
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK---S-GRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~---~-~~~~~~~~Dp~G~~iel~~ 129 (132)
++.|+++.|+|++++.+.+++ .|+.+.... . ..+.+.+..+++..+++..
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 578999999999999999985 899875431 1 2233445555667777764
No 112
>PRK11478 putative lyase; Provisional
Probab=95.60 E-value=0.17 Score=29.64 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=33.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 63 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 63 (132)
.++.|+++.|.|++++.+-..+ .|.+..........+...+|+.- ++..++++
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~ 127 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEAIRVDPYTQKRFTFFNDPDGLPLELY 127 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeeccccCCCCCCEEEEEECCCCCEEEEE
Confidence 4578999999999999998877 79887543222222334444443 34455554
No 113
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=95.59 E-value=0.16 Score=30.34 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=42.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEecCCC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNP 68 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 68 (132)
.++.|+++.|.|++++.+-.++ .|.++.........+.+.++++- ++..+++++....
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCC
Confidence 4688999999999999999888 79998765443234445666555 4568888876554
No 114
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=95.59 E-value=0.12 Score=32.03 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=37.7
Q ss_pred CCceEEEEEECCHHHHHHHHHh-CCCeEEcc-----C----C--------C-----ccEEEEeCCCCCeEEEEeeC
Q 032856 79 GRDRHTCIAIRDVSKLKMILDK-AGISYTLS-----K----S--------G-----RPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~-----~----~--------~-----~~~~~~~Dp~G~~iel~~~~ 131 (132)
.++.|+++.|.|++...+..++ .|.+.... . . + ....++..++|..+|+++..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 4579999999999999999977 79865310 0 0 0 23345565677889998864
No 115
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=95.47 E-value=0.12 Score=31.87 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=34.4
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEccCCCccEEEEeC--CCCCeEEEEee
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD--PDANALEFTQV 130 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~D--p~G~~iel~~~ 130 (132)
|+.|+++.|.|+++..+.+.+ .|.+......+. ..++.. ..+..++|.+.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~-~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGDR-VRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCE-EEEEecCCCCCCEEEEEeC
Confidence 478999999999999999976 698875433322 222232 24677887664
No 116
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.99 E-value=0.21 Score=29.17 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=33.4
Q ss_pred CceEEEEEECCHHHHHHHHHhC----CCeEEccCCCccEEEEeCCCCCeEEEEee
Q 032856 80 RDRHTCIAIRDVSKLKMILDKA----GISYTLSKSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~~----g~~~~~~~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
++.|+.+.|+|++++.+.+.+. |.+......+ ...|+...++..+++.+.
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~i~l~~~ 54 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-GRSWRAGDGGTYLVLQQA 54 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-CceEEecCCceEEEEEec
Confidence 3689999999999999988875 8887554322 223333234566666643
No 117
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=94.99 E-value=0.19 Score=29.15 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=29.8
Q ss_pred ceEEEEEECCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEE
Q 032856 81 DRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 126 (132)
Q Consensus 81 ~~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~ie 126 (132)
+.|+++.|+|+++..+..+..|.+..........+.+.-++|..+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~~~~~~~~~~~~~l~ 46 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEADDEPHVEAVLPGGVRLA 46 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCcCCCCcEEEEeCCCEEEE
Confidence 4689999999999999998889876433221123334444444443
No 118
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=94.93 E-value=0.2 Score=28.14 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=33.8
Q ss_pred ceEEEEEECCHHHHHHHHH-hCCCeEEccCC-CccEEEEeCCCCCeEEEEee
Q 032856 81 DRHTCIAIRDVSKLKMILD-KAGISYTLSKS-GRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 81 ~~hi~~~v~d~~~~~~~l~-~~g~~~~~~~~-~~~~~~~~Dp~G~~iel~~~ 130 (132)
+.|+++.|+|++++.+.+. -.|.+....+. .....++..+++..++|...
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEec
Confidence 4699999999999999887 57887654322 12334555555556777654
No 119
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=94.89 E-value=0.072 Score=33.44 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=27.2
Q ss_pred ceEEEEEECCHHHHHHHH-HhCCCeEEcc---CC-CccEEEEeCCCCCeEEEEeeC
Q 032856 81 DRHTCIAIRDVSKLKMIL-DKAGISYTLS---KS-GRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 81 ~~hi~~~v~d~~~~~~~l-~~~g~~~~~~---~~-~~~~~~~~Dp~G~~iel~~~~ 131 (132)
+.|+.+.|+|++++.+++ ++.|.++..+ +. |.....+.=++| .+||+...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS-EEEEEEES
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc-eEEEEEeC
Confidence 479999999999999999 8889987653 22 333333333667 99998754
No 120
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.81 E-value=0.24 Score=28.56 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=35.6
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEccC---C--CccEEEEeCC---CCCeEEEEee
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK---S--GRPAIFTRDP---DANALEFTQV 130 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~---~--~~~~~~~~Dp---~G~~iel~~~ 130 (132)
++.|+++.|+|++++.+.+++ .|.+..... . .....++... .|..++|.+.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEec
Confidence 368999999999999999986 798765321 1 1234455554 5667887754
No 121
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=94.78 E-value=0.17 Score=27.73 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=33.5
Q ss_pred CHHHHHHHHHhCCCeEEc---cCCCccEEEEeCCCCCeEEEEe
Q 032856 90 DVSKLKMILDKAGISYTL---SKSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~---~~~~~~~~~~~Dp~G~~iel~~ 129 (132)
+.+++.+.+++.|+++.. ..++.+.+...|.+|+.+|+.=
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYV 72 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEE
Confidence 789999999999997643 2456789999999999999864
No 122
>PRK10291 glyoxalase I; Provisional
Probab=94.57 E-value=0.5 Score=27.76 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=38.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccC-CCCCCCceeEEEEe-CCeEEEEEecCC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEAR-PHDKLPYRGAWLWV-GAEMIHLMELPN 67 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~~~ 67 (132)
.++.|+++.|.|++++.+-.++ .|.++.... +........+|+.- ++..++|++...
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 3688999999999999888877 788776432 22222223344444 566888887654
No 123
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=94.57 E-value=0.69 Score=29.51 Aligned_cols=76 Identities=18% Similarity=0.106 Sum_probs=41.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEE------EEeCCeEEEEEecCCCCCCCCCCCCCCCceE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAW------LWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 83 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~h 83 (132)
-.++||+++|++.+.|.+|-+..+..-..-..- .--+-..+. +..++..+.+++-+-+.. +.+. ..|.-|
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen-~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~--K~Yp-~eGWEH 108 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSEN-MINGRPICLFKLNQPLQFGGWSIDCVELPYPKD--KRYP-QEGWEH 108 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEE-EETTEEEEEEEEEEEEEETTEEEEEEEEE---S--S--S-S-EEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhc-eeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC--CCCC-CCCceE
Confidence 468999999999999999999988764332111 001111122 344566777777655433 2222 267899
Q ss_pred EEEEEC
Q 032856 84 TCIAIR 89 (132)
Q Consensus 84 i~~~v~ 89 (132)
|.+.++
T Consensus 109 IE~Vip 114 (185)
T PF06185_consen 109 IEFVIP 114 (185)
T ss_dssp EEEE--
T ss_pred EEEEec
Confidence 999998
No 124
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=94.38 E-value=0.52 Score=27.76 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.6
Q ss_pred ceEEEEEECCHHHHHHHHHh-CCCeEEccCCCccEEEEeCC--CCCeEEEEee
Q 032856 81 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFTQV 130 (132)
Q Consensus 81 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~Dp--~G~~iel~~~ 130 (132)
+.|+.+.|+|+++..+.+.+ .|.+......+....|+..+ .+..+.+.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEec
Confidence 68999999999999999987 89987654332234455443 2345666543
No 125
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=94.38 E-value=0.35 Score=30.88 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=37.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEecCC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 67 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 67 (132)
.++.|++|.|.|++++.+.+.+ .|.+...... .......+|+.- ++..++|++..+
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~-~~~~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKPD-DGKMKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCCc-cCCceeEEEEECCCCCEEEEEECCC
Confidence 3799999999999999999988 7988764322 111223344433 456777776544
No 126
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.08 E-value=0.62 Score=26.81 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=34.0
Q ss_pred ceEEEEEECCHHHHHHHHHh-CCCeEEc----cCCCccEEEEeCCCCCeEEEEee
Q 032856 81 DRHTCIAIRDVSKLKMILDK-AGISYTL----SKSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 81 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~----~~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+.|+++.|+|+++..+.+.+ .|.+... ...+....|+.-.+|..+++++.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 56 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTR 56 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcC
Confidence 57999999999999998887 6887532 11222333444345677888753
No 127
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.97 E-value=0.83 Score=27.89 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHhhcCCe-ee--ccCCCC-----CCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCH
Q 032856 20 ENLERSLEFYQNILGLE-IN--EARPHD-----KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 91 (132)
Q Consensus 20 ~d~~~~~~fy~~~lg~~-~~--~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 91 (132)
.+.+.|.+||.++|.=. +. .+.+.+ ....-.+.+++++..+..+........ ..+.. ..+-+.++|.
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~f----~fneA-~S~~v~~~~q 88 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTSF----KFNEA-FSFQVACDDQ 88 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcCC----CcCcc-EEEEEEcCCH
Confidence 89999999999998542 22 111111 222344556777765444432221111 11111 2344455554
Q ss_pred ---HHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEE
Q 032856 92 ---SKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 92 ---~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~ 128 (132)
|.+.+.|.+.|.+ ...-.+++|-.|..|.|.
T Consensus 89 ~E~Drlwnal~~~g~e------~~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 89 EEIDRLWNALSDNGGE------AEACGWLKDKFGVSWQIV 122 (151)
T ss_pred HHHHHHHHHHhccCcc------hhcceeEecccCcEEEEc
Confidence 4456777777762 334468999999988875
No 128
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=93.79 E-value=0.71 Score=26.77 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=31.9
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEccCCCccEEEEeCCC-CCeEEEE
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFT 128 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~Dp~-G~~iel~ 128 (132)
++.|+++.|+|++++.+.+.+ .|.+....+.. ...++..++ +..+.+.
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-GALYLRMDDRAWRIAVH 51 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC-CeEEEEccCCceEEEEE
Confidence 468999999999999999977 79987554222 234454432 3344443
No 129
>PRK11700 hypothetical protein; Provisional
Probab=93.70 E-value=1.1 Score=28.54 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=47.1
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEE------EeCCeEEEEEecCCCCCCCCCCCCCCCce
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWL------WVGAEMIHLMELPNPDPLSGRPEHGGRDR 82 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (132)
--..+||.++|++.+.|.+|-+..+..-..-... .-.+-..+.+ ..++..+.+++.+-+.. +.+. ..|.-
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen-~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp-~eGWE 112 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLSEN-IINGRPICLFELDQPLQVGHWSIDCVELPYPGE--KRYP-HEGWE 112 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhhcc-ccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCC-CCCce
Confidence 3468999999999999999988877553322111 1111122223 33455666766554432 2222 25689
Q ss_pred EEEEEEC
Q 032856 83 HTCIAIR 89 (132)
Q Consensus 83 hi~~~v~ 89 (132)
||.+.++
T Consensus 113 HIElVlp 119 (187)
T PRK11700 113 HIELVLP 119 (187)
T ss_pred EEEEEec
Confidence 9999998
No 130
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=93.58 E-value=0.45 Score=26.31 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=35.1
Q ss_pred EEEEEECCHHHHHHHHHh-CCCeEEccCC--CccEEEEeCCCCCeEEEEeeC
Q 032856 83 HTCIAIRDVSKLKMILDK-AGISYTLSKS--GRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 83 hi~~~v~d~~~~~~~l~~-~g~~~~~~~~--~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|+.+.|.|+++..+.+.+ .|.+...... .....++.++ +..++|.+.+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~ 51 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEGD 51 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecCC
Confidence 789999999999999998 8998765442 2345555554 6777776643
No 131
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=93.56 E-value=0.8 Score=26.48 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=33.0
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEccCCCccEEEEeCCC-CCeEEEEe
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFTQ 129 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~Dp~-G~~iel~~ 129 (132)
.+.|+.+.|+|+++..+.+.+ .|.++..... ..+++...+ +..+.|.+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~ 51 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEE 51 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEe
Confidence 368999999999999999986 7988765432 234444433 34555544
No 132
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=93.30 E-value=0.59 Score=26.71 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=24.5
Q ss_pred CceEEEEEECCHHHHHHHHHhCCCeEEc
Q 032856 80 RDRHTCIAIRDVSKLKMILDKAGISYTL 107 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~~g~~~~~ 107 (132)
++.|+++.|+|++++.+.+...|.+...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 4789999999999999999888988754
No 133
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=93.09 E-value=0.84 Score=26.38 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=31.4
Q ss_pred ceEEEEEECCHHHHHHHHHh----CCCeEEccCCCccEEEEeCC-CCCeEEEEe
Q 032856 81 DRHTCIAIRDVSKLKMILDK----AGISYTLSKSGRPAIFTRDP-DANALEFTQ 129 (132)
Q Consensus 81 ~~hi~~~v~d~~~~~~~l~~----~g~~~~~~~~~~~~~~~~Dp-~G~~iel~~ 129 (132)
+.|+++.|.|++++.+.+++ .|.+......+. .+.+..+ .+..+.+..
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 53 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPG-AVGYGKGGGGPDFWVTK 53 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCc-eeEeccCCCCceEEEec
Confidence 46999999999999988887 588765443222 2334444 245555544
No 134
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=93.02 E-value=0.52 Score=30.13 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=38.0
Q ss_pred CceEEEEEEC--CHHHHHHHHHh-CCCeEEcc---C---CCccEEEEeCCCC-CeEEEEee
Q 032856 80 RDRHTCIAIR--DVSKLKMILDK-AGISYTLS---K---SGRPAIFTRDPDA-NALEFTQV 130 (132)
Q Consensus 80 ~~~hi~~~v~--d~~~~~~~l~~-~g~~~~~~---~---~~~~~~~~~Dp~G-~~iel~~~ 130 (132)
++.|+++.|+ |++++.+.+++ .|.+.... + .+.++.++..|+| ..++|.+.
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~ 63 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEP 63 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecC
Confidence 4789999999 99999999876 89876432 1 2455677788765 56788764
No 135
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=92.83 E-value=0.83 Score=26.46 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=24.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeecc
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEA 40 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~ 40 (132)
.++.|+++.|.|++++.+...+ .|.+...+
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~~ 100 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLIDE 100 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccCC
Confidence 3677999999999999998877 68877653
No 136
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=92.72 E-value=0.83 Score=25.86 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=26.7
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeeccC
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEAR 41 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~ 41 (132)
..+..|+.+.|.|++++.+...+ .|..+....
T Consensus 65 ~~~~~~~~~~v~di~~~~~~l~~-~g~~~~~~~ 96 (119)
T cd07263 65 PGGTPGLVLATDDIDATYEELKA-RGVEFSEEP 96 (119)
T ss_pred CCCceEEEEEehHHHHHHHHHHh-CCCEEeecc
Confidence 35688999999999999999887 798877644
No 137
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=92.53 E-value=1.1 Score=25.56 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=25.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEAR 41 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~ 41 (132)
.++.|+.+.|.|++++.+-..+ .|..+....
T Consensus 69 ~~~~~i~~~v~did~~~~~l~~-~G~~~~~~~ 99 (121)
T cd07233 69 NGFGHLAFAVDDVYAACERLEE-MGVEVTKPP 99 (121)
T ss_pred CCeEEEEEEeCCHHHHHHHHHH-CCCEEeeCC
Confidence 3678999999999999888877 788887643
No 138
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.52 E-value=1.1 Score=25.69 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCceEEEEEECCHHHHHHHHHh-CCCeEEccC
Q 032856 79 GRDRHTCIAIRDVSKLKMILDK-AGISYTLSK 109 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~ 109 (132)
.++.|+.+.|+|+++..+.+++ .|.+.....
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 3578999999999999999988 798876543
No 139
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=92.49 E-value=0.66 Score=26.65 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.3
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEc
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTL 107 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~ 107 (132)
++.|+++.|.|++++.+.+.+ .|.+...
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~ 29 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVE 29 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEe
Confidence 368999999999999999987 7988754
No 140
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=91.77 E-value=0.83 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.1
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeecc
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINEA 40 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~ 40 (132)
-.+..|+.+.|.|++++.+.+.+ +|.+....
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~ 84 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERLKE-LGAEIVTE 84 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHHHH-TTSEEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHHHH-CCCeEeeC
Confidence 44678999999999999999988 79887653
No 141
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=91.03 E-value=2.3 Score=25.76 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=37.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCC-CCCCCceeEEEEe-CCeEEEEEecC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARP-HDKLPYRGAWLWV-GAEMIHLMELP 66 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~~ 66 (132)
.++.|+.+.|.|++++.+...+ .|.++..... .+......+|+.- .+..++++...
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 3688999999999999999988 7887664322 1222223444444 45677777644
No 142
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=91.03 E-value=1.8 Score=24.68 Aligned_cols=54 Identities=6% Similarity=-0.181 Sum_probs=32.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEEec
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMEL 65 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 65 (132)
.++.|+++.|.|.++..+..+. +|.........+. +...+++.- ++..++++..
T Consensus 56 ~~~~~~af~v~~~~~~~~~~~~-~g~~~~~~~~~~~-~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAAAL-PGASVIDDLEAPG-GGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CcccEEEEEECCHHHHHHHHHc-CCCeeecCCCCCC-CceEEEEECCCCCEEEEEec
Confidence 4688999999999988887554 7887654322111 122344433 4456666543
No 143
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=90.99 E-value=2 Score=24.93 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.4
Q ss_pred eEEEEEECCHHHHHHHHHhCCCeEEc
Q 032856 82 RHTCIAIRDVSKLKMILDKAGISYTL 107 (132)
Q Consensus 82 ~hi~~~v~d~~~~~~~l~~~g~~~~~ 107 (132)
.++.+.|+|+++..+.+++.|.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcc
Confidence 56899999999999999888987653
No 144
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=90.90 E-value=2.2 Score=25.28 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=33.2
Q ss_pred CCceEEEEEECCHHHHHHHHHh-CCCeEEccCCCccEEEEeCCC---CCeEEEEe
Q 032856 79 GRDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD---ANALEFTQ 129 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~Dp~---G~~iel~~ 129 (132)
..+.|+++.|+|+++..+.+++ .|.+...... ....|+...+ ...+.+..
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~-~~~~~~~~~~~~~~~~i~l~~ 55 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK-GRGAFLRAAGGGDHHNLFLIK 55 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec-CcEEEEECCCCCCCcEEEEec
Confidence 4578999999999999999876 7988654322 2234554432 24555543
No 145
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=90.79 E-value=1.9 Score=24.44 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=29.7
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEccCCCccEEEEeCC
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP 120 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~Dp 120 (132)
.+.|+.+.|+|+++..+.+.+ .|.+...... ...++..+
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~ 41 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCS 41 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC--CeEEEecC
Confidence 368999999999999999998 8998765432 24555554
No 146
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=90.01 E-value=2.3 Score=24.25 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.4
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeec
Q 032856 14 HVGILCENLERSLEFYQNILGLEINE 39 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~ 39 (132)
|+.+.|.|+++..+...+ .|.+...
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~ 93 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVL 93 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeee
Confidence 899999999999999888 6876654
No 147
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=89.91 E-value=0.11 Score=24.80 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=22.1
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHhhcC
Q 032856 7 YGVVSVHHVGILCENLERSLEFYQNILG 34 (132)
Q Consensus 7 ~~~~~~~hv~i~v~d~~~~~~fy~~~lg 34 (132)
..+.-++-.++.+++.++.++||+..|.
T Consensus 7 ~gigp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 7 EGIGPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CCcCccccCCCccccccchhHHHHHHHH
Confidence 4445566778888999999999999764
No 148
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=89.75 E-value=3.2 Score=25.38 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.6
Q ss_pred CCceEEEEEECCHHHHHHHHHh-CCCeEE
Q 032856 79 GRDRHTCIAIRDVSKLKMILDK-AGISYT 106 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~ 106 (132)
.++.|+++.|+|++++.+.+.+ .|.++.
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~ 36 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLS 36 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEE
Confidence 5689999999999999999987 898764
No 149
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=89.67 E-value=3.2 Score=25.33 Aligned_cols=56 Identities=11% Similarity=-0.072 Sum_probs=32.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhh--cCCeeeccCC-CCCCCceeEEEEe-CCeEEEEEec
Q 032856 10 VSVHHVGILCENLERSLEFYQNI--LGLEINEARP-HDKLPYRGAWLWV-GAEMIHLMEL 65 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~--lg~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~ 65 (132)
.+++|++|.|.|++++.+.+..+ .|.++..... ........+|+.- ++..+++...
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 57999999999999998443332 5777653211 1111112234433 4557777643
No 150
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=89.65 E-value=2.8 Score=24.71 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=20.1
Q ss_pred eeeeEEEEeC--CHHHHHHHHHhhcCCeeec
Q 032856 11 SVHHVGILCE--NLERSLEFYQNILGLEINE 39 (132)
Q Consensus 11 ~~~hv~i~v~--d~~~~~~fy~~~lg~~~~~ 39 (132)
+++|+++.|. |+++..+-.++ .|.....
T Consensus 66 ~~~Hiaf~v~~~~ld~~~~~l~~-~gv~~~~ 95 (131)
T cd08364 66 TYNHIAFKISDSDVDEYTERIKA-LGVEMKP 95 (131)
T ss_pred CceEEEEEcCHHHHHHHHHHHHH-CCCEEec
Confidence 5899999998 56666666655 6776554
No 151
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=89.62 E-value=2.9 Score=24.72 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=23.1
Q ss_pred ceEEEEEECCHHHHHHHHHh-CCCeEEc
Q 032856 81 DRHTCIAIRDVSKLKMILDK-AGISYTL 107 (132)
Q Consensus 81 ~~hi~~~v~d~~~~~~~l~~-~g~~~~~ 107 (132)
+.|+++.|+|++++.+.+.+ .|.++..
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~ 28 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLV 28 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEec
Confidence 47999999999999999987 6887653
No 152
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=89.50 E-value=2.5 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=23.3
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeecc
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEA 40 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~ 40 (132)
..|+.+.|.|++++.+-+.+ .|.+....
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 46999999999999988877 68887653
No 153
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=89.37 E-value=2.8 Score=24.17 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=25.4
Q ss_pred CCceEEEEEECCHHHHHHHHHh-CCCeEEcc
Q 032856 79 GRDRHTCIAIRDVSKLKMILDK-AGISYTLS 108 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~ 108 (132)
.++.|+++.|+|++++.+.+.+ .|.+....
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 3578999999999999999986 89987544
No 154
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=88.68 E-value=3.3 Score=24.14 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=31.4
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEccCCCccEEEEe-CCCCCeEEEE
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTR-DPDANALEFT 128 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~-Dp~G~~iel~ 128 (132)
.+.|+++.|+|++++.+.+.+ .|.+...... ...|+. +.++..+.+.
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~--~~~~l~~~~~~~~i~l~ 54 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTA--KATYFRSDARDHTLVYI 54 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCC--CeEEEEcCCccEEEEEE
Confidence 468999999999999999987 6988654322 234443 3334444443
No 155
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=88.51 E-value=3.9 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.7
Q ss_pred CCceEEEEEECCHHHHHHHHHh-CCCeEE
Q 032856 79 GRDRHTCIAIRDVSKLKMILDK-AGISYT 106 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~ 106 (132)
..+.|+.+.|+|++++.+.+++ .|.+..
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~ 31 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVS 31 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEE
Confidence 3578999999999999999966 788764
No 156
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=88.00 E-value=4 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=22.3
Q ss_pred eeeeeEEEEeC--CHHHHHHHHHhhcCCeeec
Q 032856 10 VSVHHVGILCE--NLERSLEFYQNILGLEINE 39 (132)
Q Consensus 10 ~~~~hv~i~v~--d~~~~~~fy~~~lg~~~~~ 39 (132)
.+++|+++.+. |++++.+...+ .|.++..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~ 92 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILP 92 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcC
Confidence 35789999987 88888888777 6887654
No 157
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=87.86 E-value=3.4 Score=23.35 Aligned_cols=31 Identities=6% Similarity=-0.025 Sum_probs=25.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEAR 41 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~ 41 (132)
....|+.+.|.|++++.+-..+ .|.++....
T Consensus 60 ~~~~~~~f~v~di~~~~~~l~~-~g~~~~~~~ 90 (114)
T cd07247 60 PPGWLVYFAVDDVDAAAARVEA-AGGKVLVPP 90 (114)
T ss_pred CCeEEEEEEeCCHHHHHHHHHH-CCCEEEeCC
Confidence 4567899999999999998877 698877543
No 158
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=87.68 E-value=3.3 Score=23.31 Aligned_cols=53 Identities=17% Similarity=0.346 Sum_probs=30.1
Q ss_pred eeeeeEEEEeC--CHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEe-CCeEEEEE
Q 032856 10 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 63 (132)
Q Consensus 10 ~~~~hv~i~v~--d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 63 (132)
.++.|+++.|. |++++.+-..+ .|.++..............++.- ++..++++
T Consensus 54 ~~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~ 109 (113)
T cd08345 54 RTYTHIAFQIQSEEFDEYTERLKA-LGVEMKPERPRVQGEGRSIYFYDPDGHLLELH 109 (113)
T ss_pred CCccEEEEEcCHHHHHHHHHHHHH-cCCccCCCccccCCCceEEEEECCCCCEEEEE
Confidence 45789999994 66766676666 57776543222111223344443 45566665
No 159
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=87.52 E-value=4.9 Score=24.76 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=45.7
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEE------EeCCeEEEEEecCCCCCCCCCCCCCCCceEEE
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWL------WVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 85 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 85 (132)
++||.++|++.+.|.+|-+.++..-..-... .-.+-..+.+ ..++..+.+++.+-+.. +.+ ...|.-||.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen-~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~--k~Y-p~eGWEHIE 77 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSEN-EINGRPIALIKLEKPLQFAGWSISIVELPFPKD--KKY-PQEGWEHIE 77 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhcc-ccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCC-CCCCceEEE
Confidence 5899999999999999998877654322111 1111122223 33455666666554432 222 236789999
Q ss_pred EEEC
Q 032856 86 IAIR 89 (132)
Q Consensus 86 ~~v~ 89 (132)
+.++
T Consensus 78 ~Vlp 81 (149)
T cd07268 78 IVIP 81 (149)
T ss_pred EEec
Confidence 9998
No 160
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=86.28 E-value=5.2 Score=23.87 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=23.2
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEE
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYT 106 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~ 106 (132)
.+.|+++.|.|++...+-..+ .|.+..
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~ 29 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVL 29 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEE
Confidence 368999999999999999965 899864
No 161
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=85.85 E-value=5 Score=23.21 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=31.1
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEccCCCccEEEEeCCCCCeEEEEe
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~Dp~G~~iel~~ 129 (132)
.+.|+++.|+|+++..+.+.+ .|++...... ...++...+|..+++..
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPFG--PFAVVKLDNGVSLDFAQ 52 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC--CEEEEEcCCCcEEEEec
Confidence 468999999999999999976 6987654321 12333333455555443
No 162
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=85.61 E-value=5 Score=23.01 Aligned_cols=27 Identities=4% Similarity=0.156 Sum_probs=22.1
Q ss_pred eeEEEEeCCHHHHHHHHHhhcCCeeecc
Q 032856 13 HHVGILCENLERSLEFYQNILGLEINEA 40 (132)
Q Consensus 13 ~hv~i~v~d~~~~~~fy~~~lg~~~~~~ 40 (132)
.|+.|.|.|++++.+...+ .|.+....
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~ 99 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSE 99 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccC
Confidence 4889999999999888877 68877554
No 163
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=85.31 E-value=5 Score=22.82 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=24.8
Q ss_pred CCceEEEEEECCHHHHHHHHHh-CCCeEEcc
Q 032856 79 GRDRHTCIAIRDVSKLKMILDK-AGISYTLS 108 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~ 108 (132)
.++.|+.+.|+|+++..+.+.+ .|.+....
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 3578999999999999998887 78876543
No 164
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.16 E-value=3.1 Score=20.97 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.8
Q ss_pred ceEEEEEECCHHHHHHHHHhCCCeE
Q 032856 81 DRHTCIAIRDVSKLKMILDKAGISY 105 (132)
Q Consensus 81 ~~hi~~~v~d~~~~~~~l~~~g~~~ 105 (132)
...+.+.+++.+.+.+.|+++|+++
T Consensus 40 ~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 40 KALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred eEEEEEEeCCHHHHHHHHHHCCceE
Confidence 4568999999999999999999864
No 165
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=84.94 E-value=5.4 Score=22.81 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.4
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEccC
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 109 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~~~ 109 (132)
++.|+.+.|+|++++.+.+.+ .|.++....
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeccC
Confidence 578999999999999999987 898876443
No 166
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=84.29 E-value=5.9 Score=22.75 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=18.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhh--cCCee
Q 032856 10 VSVHHVGILCENLERSLEFYQNI--LGLEI 37 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~--lg~~~ 37 (132)
.+++|+++.|.+.+.-.++++.+ .|.+.
T Consensus 61 ~~~~h~af~v~~~~~v~~~~~~l~~~G~~~ 90 (121)
T cd09013 61 AGLGHIAWRASSPEALERRVAALEASGLGI 90 (121)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCcc
Confidence 46889999998655555555443 46654
No 167
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=82.20 E-value=7.1 Score=22.14 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=23.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccC
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEAR 41 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~ 41 (132)
.+..|+.+.|.|++++.+-..+ .|.+.....
T Consensus 67 ~~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~~ 97 (122)
T cd07246 67 GTPVSLHLYVEDVDATFARAVA-AGATSVMPP 97 (122)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeEecCc
Confidence 3567999999999988776665 588766543
No 168
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=81.58 E-value=9.2 Score=23.02 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=30.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhh--cCCeeeccC-CCCCCCceeEEEEe-CCeEEEEEe
Q 032856 10 VSVHHVGILCENLERSLEFYQNI--LGLEINEAR-PHDKLPYRGAWLWV-GAEMIHLME 64 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~--lg~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~ 64 (132)
.+++|+++.|.|++...+.+..+ .|.++.... ..........|+.- ++..+++..
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 46789999999988855444332 577654321 11111112344443 556787765
No 169
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=80.88 E-value=8.4 Score=22.14 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.0
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEc
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTL 107 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~ 107 (132)
++.|+.+.|+|++++.+.+.+ .|.+...
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~ 29 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHV 29 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEE
Confidence 468999999999999999986 8987654
No 170
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=80.78 E-value=3.4 Score=23.39 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=24.3
Q ss_pred CceEEEEEECCHHHHHHHHHh-CCCeEEc
Q 032856 80 RDRHTCIAIRDVSKLKMILDK-AGISYTL 107 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~-~g~~~~~ 107 (132)
.+.|+++.|+|+++..+.+++ .|.+...
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~ 30 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVK 30 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeee
Confidence 368999999999999999987 8888754
No 171
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=80.76 E-value=9 Score=22.41 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.8
Q ss_pred eEEEEEECCHHHHHHHHHh-CCCeEE
Q 032856 82 RHTCIAIRDVSKLKMILDK-AGISYT 106 (132)
Q Consensus 82 ~hi~~~v~d~~~~~~~l~~-~g~~~~ 106 (132)
.|+++.|.|++++.+.+.+ .|.+..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~ 26 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVS 26 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEE
Confidence 4899999999999998876 798864
No 172
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=80.70 E-value=2.3 Score=29.45 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=22.4
Q ss_pred CCCceEEEEEE------CCHHHHHHHHHhCCCeEE
Q 032856 78 GGRDRHTCIAI------RDVSKLKMILDKAGISYT 106 (132)
Q Consensus 78 ~~~~~hi~~~v------~d~~~~~~~l~~~g~~~~ 106 (132)
+..++|++..| .|++++.+.|+++|++..
T Consensus 182 G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 182 GYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp TCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 56789999999 999999999999999876
No 173
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.24 E-value=6.4 Score=20.34 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=20.5
Q ss_pred eEEEEEE--CCHHHHHHHHHhCCCeEEcc
Q 032856 82 RHTCIAI--RDVSKLKMILDKAGISYTLS 108 (132)
Q Consensus 82 ~hi~~~v--~d~~~~~~~l~~~g~~~~~~ 108 (132)
..+.+.+ ++.+.+.+.|+++|+++.++
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 3355555 48889999999999987654
No 174
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.98 E-value=4.6 Score=21.58 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCeEEc------cCCCccEEEEeCCCCCeE
Q 032856 91 VSKLKMILDKAGISYTL------SKSGRPAIFTRDPDANAL 125 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~------~~~~~~~~~~~Dp~G~~i 125 (132)
+..+.+.|.+.|+.+.. +..-.-.||++|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 45567888999998754 223356899999999876
No 175
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=79.86 E-value=8.8 Score=21.71 Aligned_cols=44 Identities=9% Similarity=0.162 Sum_probs=29.2
Q ss_pred EEEEECCHHHHHHHHHhC-CCeEEccCCCccEEEEeCCCCCeEEEEe
Q 032856 84 TCIAIRDVSKLKMILDKA-GISYTLSKSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 84 i~~~v~d~~~~~~~l~~~-g~~~~~~~~~~~~~~~~Dp~G~~iel~~ 129 (132)
|.+.|+|++++.+.+.+. |.+..... .....++.. +|..+++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~-~~~~~~~~~-~~~~~~l~~ 46 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS-NDGVAFFQL-GGLVLALFP 46 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC-CCceEEEEc-CCeEEEEec
Confidence 688999999999998875 88875442 122334443 555666654
No 176
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=79.78 E-value=8.4 Score=21.44 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=21.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCe
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLE 36 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~ 36 (132)
.+-.|+.+.|.|++++.+-..+ .|..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 57 GRGGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred CCcEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 3455899999999999988877 7887
No 177
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=79.59 E-value=4.1 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=24.1
Q ss_pred CCceEEEEEECCHHHHHHHHHh-CCCeEE
Q 032856 79 GRDRHTCIAIRDVSKLKMILDK-AGISYT 106 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~ 106 (132)
.++.|+++.|+|+++..+.+.+ .|.+..
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVS 30 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEE
Confidence 3578999999999999999987 898764
No 178
>PRK06724 hypothetical protein; Provisional
Probab=77.56 E-value=12 Score=22.10 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=29.5
Q ss_pred eeeeeEEEEe---CCHHHHHHHHHhhcCCeeeccCCC-C--CCCceeEEEEe-CCeEEEEEec
Q 032856 10 VSVHHVGILC---ENLERSLEFYQNILGLEINEARPH-D--KLPYRGAWLWV-GAEMIHLMEL 65 (132)
Q Consensus 10 ~~~~hv~i~v---~d~~~~~~fy~~~lg~~~~~~~~~-~--~~~~~~~~~~~-~~~~~~l~~~ 65 (132)
.+..|+++.| .|+++..+...+ .|.+....... . ..+...+++.- ++..+++...
T Consensus 62 ~g~~h~af~v~~~~dvd~~~~~l~~-~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 62 LGPRHICYQAINRKVVDEVAEFLSS-TKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CCceeEEEecCChHHHHHHHHHHHH-CCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 3678999998 455555555544 68776432211 1 12223333333 4556776544
No 179
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.95 E-value=7.7 Score=21.20 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=22.5
Q ss_pred ceEEEEEECC----HHHHHHHHHhCCCeEEc
Q 032856 81 DRHTCIAIRD----VSKLKMILDKAGISYTL 107 (132)
Q Consensus 81 ~~hi~~~v~d----~~~~~~~l~~~g~~~~~ 107 (132)
...+.++|+| ++.+.+.|+++|+++..
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 3558889888 88999999999998754
No 180
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=76.51 E-value=12 Score=21.40 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=31.4
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCC-eeeccCCCCCCCceeEEEEe-CCeEEEEE
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGL-EINEARPHDKLPYRGAWLWV-GAEMIHLM 63 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 63 (132)
.+..|+.+.|.|+++..+-.++ .|. +..........+.+.+++.- ++..+++.
T Consensus 63 ~~~~~l~~~v~dvd~~~~~l~~-~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 63 SNNFELYFEEEDFDAFLDKLKR-YDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVG 117 (120)
T ss_pred CCceEEEEEehhhHHHHHHHHh-cCCcEEecCcccCCCccEEEEEECCCCCEEEEe
Confidence 3456999999999999999888 553 44433222222334444444 34455554
No 181
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=75.83 E-value=6.5 Score=24.39 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.1
Q ss_pred CCceEEEEEECCHHHHHHHHHh-CCCeEE
Q 032856 79 GRDRHTCIAIRDVSKLKMILDK-AGISYT 106 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~-~g~~~~ 106 (132)
.++.|+++.|+|+++..+.+.+ .|++..
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~ 33 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLR 33 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEE
Confidence 4578999999999999999975 898764
No 182
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=75.49 E-value=15 Score=22.10 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=31.7
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhh--cCCeeeccCC-CCCCCceeEEEEe-CCeEEEEEecC
Q 032856 9 VVSVHHVGILCENLERSLEFYQNI--LGLEINEARP-HDKLPYRGAWLWV-GAEMIHLMELP 66 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~--lg~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~~ 66 (132)
-.+++|+++.|.|.+...+++..+ .|.+...... .........|+.. ++..+++....
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 358999999999877655555543 4666543211 1111222334444 44566665433
No 183
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=69.55 E-value=19 Score=20.78 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEeeC
Q 032856 93 KLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 93 ~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
++.+-|+++|++ ..++|+.+|.+++|...++.
T Consensus 28 E~~a~lk~agi~-------nYSIfLde~~n~lFgy~E~~ 59 (105)
T COG3254 28 ELLALLKEAGIR-------NYSIFLDEEENLLFGYWEYE 59 (105)
T ss_pred HHHHHHHHcCCc-------eeEEEecCCcccEEEEEEEc
Confidence 455667777774 56889999999999888875
No 184
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=69.40 E-value=18 Score=20.42 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=30.1
Q ss_pred eEEEEEECCHHHHHHHHHh-CCCeEEccCCCccEEEEeCCCCCeEEEE
Q 032856 82 RHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 82 ~hi~~~v~d~~~~~~~l~~-~g~~~~~~~~~~~~~~~~Dp~G~~iel~ 128 (132)
.++++.|.|+++..+.+++ .|.+....+.+ ...++.-.++..+.+.
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~~-~~~~l~~~~~~~~~l~ 48 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKEDR-RLAFFWVGGRGMLLLF 48 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCCC-ceEEEEcCCCcEEEEE
Confidence 4799999999999999975 79887653222 2344444343444443
No 185
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=69.07 E-value=18 Score=20.27 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=19.2
Q ss_pred eeeeeEEEEeCCHH---HHHHHHHhhcCCeeecc
Q 032856 10 VSVHHVGILCENLE---RSLEFYQNILGLEINEA 40 (132)
Q Consensus 10 ~~~~hv~i~v~d~~---~~~~fy~~~lg~~~~~~ 40 (132)
.+..|+.+.|.|.+ ++.+...+ .|.++...
T Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~~~~-~g~~v~~~ 90 (114)
T cd07261 58 GGGSELAFMVDDGAAVDALYAEWQA-KGVKIIQE 90 (114)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHH-CCCeEecC
Confidence 35789999998744 44444444 56666543
No 186
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=68.96 E-value=14 Score=18.88 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=19.8
Q ss_pred EEEEEECCHHHHHHHHHhCCCeEE
Q 032856 83 HTCIAIRDVSKLKMILDKAGISYT 106 (132)
Q Consensus 83 hi~~~v~d~~~~~~~l~~~g~~~~ 106 (132)
.+-+.++|.+.+.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 366677899899999999998763
No 187
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=66.65 E-value=22 Score=20.22 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=30.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhh--cCCeeeccCCCCC--CCceeEEEEe-CCeEEEEEe
Q 032856 10 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK--LPYRGAWLWV-GAEMIHLME 64 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~--lg~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~ 64 (132)
.++.|+++.|.|.+...++++.+ .|.++........ ......|+.. ++..++++.
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEE
Confidence 47899999999966655555554 3766654322111 1112234433 445666665
No 188
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.28 E-value=12 Score=19.36 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=19.6
Q ss_pred ceEEEEEEC---CHHHHHHHHHhCCCeE
Q 032856 81 DRHTCIAIR---DVSKLKMILDKAGISY 105 (132)
Q Consensus 81 ~~hi~~~v~---d~~~~~~~l~~~g~~~ 105 (132)
..++.++++ +++++.+.|+++|+++
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 456788886 5777789999999875
No 189
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=65.67 E-value=23 Score=20.17 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.0
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeecc
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEA 40 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~ 40 (132)
.-.|+.+.|.|++++.+-..+ .|.++...
T Consensus 68 ~~~~~~~~v~d~d~~~~~l~~-~G~~v~~~ 96 (122)
T cd08355 68 GTQGVYVVVDDVDAHYERARA-AGAEILRE 96 (122)
T ss_pred ceEEEEEEECCHHHHHHHHHH-CCCEEeeC
Confidence 456899999999888776666 57777654
No 190
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=62.75 E-value=11 Score=22.48 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=47.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe---EEEEEecCCC-CCCCCC---CCCCCCceE
Q 032856 11 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE---MIHLMELPNP-DPLSGR---PEHGGRDRH 83 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~-~~~~~~---~~~~~~~~h 83 (132)
.++-+-+.|++.+.|..-..+ -||.+..... ..+...+. ...+...... +-.... ......-.-
T Consensus 41 dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dV--------laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAl 111 (142)
T COG4747 41 DFGIIRMVVDRPDEAHSVLEE-AGFTVRETDV--------LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKAL 111 (142)
T ss_pred CcceEEEEcCChHHHHHHHHH-CCcEEEeeeE--------EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEE
Confidence 355667789999999988888 5887654211 11111110 0000000000 000000 000112234
Q ss_pred EEEEECCHHHHHHHHHhCCCeEEc
Q 032856 84 TCIAIRDVSKLKMILDKAGISYTL 107 (132)
Q Consensus 84 i~~~v~d~~~~~~~l~~~g~~~~~ 107 (132)
+-++|+|++.+.+.|+++|+++..
T Consensus 112 li~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 112 LIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEhhHHHHHHHHHHHcCCeecC
Confidence 888999999999999999998754
No 191
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.73 E-value=22 Score=19.14 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCeEEcc------CCCccEEEEeCCCCCeE
Q 032856 91 VSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANAL 125 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~~------~~~~~~~~~~Dp~G~~i 125 (132)
+-.+...|.+.|+.+... ..-...||++|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 344567888899987532 22357899999999876
No 192
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=60.63 E-value=29 Score=19.73 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=19.8
Q ss_pred eeEEEEeCCHHHHHHHHHhhcCCee
Q 032856 13 HHVGILCENLERSLEFYQNILGLEI 37 (132)
Q Consensus 13 ~hv~i~v~d~~~~~~fy~~~lg~~~ 37 (132)
.|+.+.|.|+++..+-..+ .|...
T Consensus 60 ~~~~~~v~dvd~~~~~l~~-~G~~~ 83 (120)
T cd08350 60 FGCCLRLPDVAALHAEFRA-AGLPE 83 (120)
T ss_pred ceEEEEeCCHHHHHHHHHH-hCccc
Confidence 4788999999999998877 67763
No 193
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=60.43 E-value=21 Score=20.35 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=20.9
Q ss_pred CHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEE
Q 032856 90 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 127 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel 127 (132)
++.++..+|.+.|.. ..+.|++|++-||
T Consensus 22 d~~~L~~~lt~~GF~----------~tl~D~~G~~HeL 49 (96)
T PF11080_consen 22 DINELNNHLTRAGFS----------TTLTDEDGNPHEL 49 (96)
T ss_pred HHHHHHHHHHhcCce----------eEEecCCCCEeec
Confidence 778888999998875 4566677766665
No 194
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=57.80 E-value=27 Score=18.41 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=18.9
Q ss_pred EEEEE--CCHHHHHHHHHhCCCeEE
Q 032856 84 TCIAI--RDVSKLKMILDKAGISYT 106 (132)
Q Consensus 84 i~~~v--~d~~~~~~~l~~~g~~~~ 106 (132)
+++.+ +|.+.+.+.|+++|+.+.
T Consensus 43 ~al~~~~~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 43 LALRFEPEDLEKIKEILEENGIEYE 67 (73)
T ss_pred EEEEEChhhHHHHHHHHHHCCCCee
Confidence 66666 489999999999998754
No 195
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.07 E-value=48 Score=21.08 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=45.1
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCee--eccCCCCCCCceeEEEEeC------CeEEEEEecCCCCCCCCCCCCCCC
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEI--NEARPHDKLPYRGAWLWVG------AEMIHLMELPNPDPLSGRPEHGGR 80 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~--~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~ 80 (132)
-..++|+.|+|.+.+.|+.|-...+.+-. +...-+ +...+.+.+. +..+.+++.+-+.. +.+. ..|
T Consensus 37 ~~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~iN---GRpI~li~l~~Pl~v~~w~id~iELP~P~~--K~YP-~eg 110 (185)
T COG3102 37 QYTADHIALRVHQEQTAKRWRRGLLQCGELLSENLIN---GRPICLIKLHQPLQVAHWQIDIIELPYPKN--KRYP-HEG 110 (185)
T ss_pred ccccceeEEEeCcHHHHHHHHHHHHHHHHHhhhhhcC---CceEEEEEcCCcceecceEEEEEEccCCcC--CCCC-CcC
Confidence 45689999999998888888766554422 221111 1122333332 33455554433322 2222 356
Q ss_pred ceEEEEEEC-CHHHH
Q 032856 81 DRHTCIAIR-DVSKL 94 (132)
Q Consensus 81 ~~hi~~~v~-d~~~~ 94 (132)
.-|+.+..+ +-+++
T Consensus 111 WEHIEiVlP~~peel 125 (185)
T COG3102 111 WEHIEIVLPGDPEEL 125 (185)
T ss_pred ceeEEEEcCCChHHH
Confidence 899999998 44444
No 196
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=57.03 E-value=13 Score=25.64 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=34.0
Q ss_pred EEEEEC-CHHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEEEeeC
Q 032856 84 TCIAIR-DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 84 i~~~v~-d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
|+.+|+ ++..+.+-|++....+...| +..++..|..++|+.+||.+.+
T Consensus 161 iS~evdDsl~~il~lLr~~D~sFrpvPh~~d~ak~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 161 ISREVDDSLPPILDLLRSVDPSFRPVPHRSDPAKSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred hhHHhcccccHHHHHHhccCcccccCCccCCCccceeeecCCCeEEEEeccC
Confidence 555555 57777888887777666544 2355666699999999998753
No 197
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=56.64 E-value=23 Score=19.75 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=20.9
Q ss_pred CCceEEEEEEC---CHHHHHHHHHhCCCeEEc
Q 032856 79 GRDRHTCIAIR---DVSKLKMILDKAGISYTL 107 (132)
Q Consensus 79 ~~~~hi~~~v~---d~~~~~~~l~~~g~~~~~ 107 (132)
.+...++++|+ +++++.++|++.|+++..
T Consensus 49 ~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 49 FARVLVGIEVPDAEDLEELIERLKALGYPYED 80 (91)
T ss_dssp CSEEEEEEE-SSTHHHHHHHHHHTSSS-EEEC
T ss_pred eeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 34567889997 457789999999998764
No 198
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.35 E-value=11 Score=25.06 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhhcCCeeeccC
Q 032856 20 ENLERSLEFYQNILGLEINEAR 41 (132)
Q Consensus 20 ~d~~~~~~fy~~~lg~~~~~~~ 41 (132)
.|+.++..||.+.||++...-.
T Consensus 145 a~~~e~a~wy~dyLGleie~~h 166 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH 166 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc
Confidence 4678889999999999987643
No 199
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=55.03 E-value=17 Score=21.56 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=19.2
Q ss_pred eEEEEEECCHHHHHHHHHhCCCeE
Q 032856 82 RHTCIAIRDVSKLKMILDKAGISY 105 (132)
Q Consensus 82 ~hi~~~v~d~~~~~~~l~~~g~~~ 105 (132)
.|+-..-.|++.+.+.|+++|.++
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev 126 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEV 126 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCcc
Confidence 355555569999999999999865
No 200
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=54.94 E-value=54 Score=21.01 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=49.1
Q ss_pred eeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEECCH
Q 032856 12 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 91 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~ 91 (132)
..-+.+.+.|.+++.+-+.. |||.......- .-.....++..+++=...+- +-...+...++|-
T Consensus 78 r~E~E~~v~D~~~~~~il~~-LGF~~~~~VkK-----~R~iY~~~~~~i~lD~VegL----------G~F~EIE~~~~d~ 141 (178)
T COG1437 78 REEIEIEVSDVEKALEILKR-LGFKEVAVVKK-----TREIYKVGNVTIELDAVEGL----------GDFLEIEVMVDDE 141 (178)
T ss_pred eeeEEEEeCCHHHHHHHHHH-cCCceeeEEEE-----EEEEEeeCCEEEEEecccCC----------cccEEEEEecCCc
Confidence 55678889999999999988 99988765431 11224456655555433332 2244455556654
Q ss_pred HH-------HHHHHHhCCCe
Q 032856 92 SK-------LKMILDKAGIS 104 (132)
Q Consensus 92 ~~-------~~~~l~~~g~~ 104 (132)
++ +.+.+++.|+.
T Consensus 142 ~e~~~~~~~~~~i~~~lGl~ 161 (178)
T COG1437 142 NEIDGAKEEIEEIARQLGLK 161 (178)
T ss_pred hhhHHHHHHHHHHHHHhCCC
Confidence 44 57788888985
No 201
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=54.77 E-value=59 Score=21.38 Aligned_cols=46 Identities=9% Similarity=0.263 Sum_probs=33.5
Q ss_pred EEEEE--CCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEee
Q 032856 84 TCIAI--RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 84 i~~~v--~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
+-+-| +|++.+.+.|.++|+...... +....|...+.|..||+...
T Consensus 97 iDlLV~~~d~~~a~~~L~~~Gy~~~~~~-~~~~~~~~~~~~~~idlH~~ 144 (249)
T PF14907_consen 97 IDLLVPPEDLERAVELLEELGYRIESPS-EHHWVYSHEPKGISIDLHWR 144 (249)
T ss_pred eEEEEeCCcHHHHHHHHHHcCCEeccCC-CcceEEEecCCCEEEEEEec
Confidence 66777 599999999999999876653 33444444478888888653
No 202
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=54.63 E-value=29 Score=25.96 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=25.4
Q ss_pred HHHHHhCCCeEEc----cCCCccEEEEeCCCCCeEE
Q 032856 95 KMILDKAGISYTL----SKSGRPAIFTRDPDANALE 126 (132)
Q Consensus 95 ~~~l~~~g~~~~~----~~~~~~~~~~~Dp~G~~ie 126 (132)
...|.++|+.+.. ..-|++..-.+|+||+..|
T Consensus 16 a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 16 AYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred HHHHHhCCCceEEEeccCccCceeeeeecCCCCeee
Confidence 4568899987753 2358899999999999887
No 203
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=54.15 E-value=41 Score=19.35 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEeeCC
Q 032856 93 KLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVDG 132 (132)
Q Consensus 93 ~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 132 (132)
++.+.|++.|+. ..++|.....|.+|-++++.+
T Consensus 27 Ev~~~l~~~Gi~-------~ysIf~~g~~~~LF~~~E~~~ 59 (106)
T PF05336_consen 27 EVLAALREAGIR-------NYSIFRDGDTGRLFMYMETDD 59 (106)
T ss_dssp HHHHHHHHCTEE-------EEEEEEETTTTEEEEEEEECT
T ss_pred HHHHHHHHCCCe-------EEEEEEeCCCCEEEEEEEecC
Confidence 345667777774 456777766778888777653
No 204
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=53.11 E-value=13 Score=16.40 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=14.7
Q ss_pred EEeCCHHHHHHHHHhhcCCe
Q 032856 17 ILCENLERSLEFYQNILGLE 36 (132)
Q Consensus 17 i~v~d~~~~~~fy~~~lg~~ 36 (132)
....|.++|.++|++.|.+.
T Consensus 10 ~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 10 RQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHCT-HHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 34578999999999977543
No 205
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=52.73 E-value=50 Score=19.92 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=34.5
Q ss_pred CCceEEEEEECCHHHHHHHHHhCCCeEE--ccCC-------C---------------ccEEEEeCCCCCeEEEEe
Q 032856 79 GRDRHTCIAIRDVSKLKMILDKAGISYT--LSKS-------G---------------RPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~~g~~~~--~~~~-------~---------------~~~~~~~Dp~G~~iel~~ 129 (132)
.+..-+++.+++.+++.+.+++.|+++. .++. + .+..|+.||+|.++..+.
T Consensus 63 ~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 63 AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 3456688888888888888888877542 1110 0 135689999998887653
No 206
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=52.40 E-value=46 Score=20.89 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=28.4
Q ss_pred EEECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCe
Q 032856 86 IAIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 124 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~ 124 (132)
+.-.|++.+.+.|++.|+++... ...++.++|.-.+|..
T Consensus 109 IG~rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 109 IGNRNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred hhHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 34459999999999999998653 3446777776656654
No 207
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=52.35 E-value=37 Score=21.43 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=28.9
Q ss_pred EEEECCHHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCe
Q 032856 85 CIAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 124 (132)
Q Consensus 85 ~~~v~d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~ 124 (132)
.+.-.|++.+.+.|++.|+++.... ..++.++|.--+|..
T Consensus 111 ~IG~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 111 NVADKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 3444699999999999999986533 345777776656654
No 208
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=51.64 E-value=49 Score=20.84 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=28.5
Q ss_pred EEECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCe
Q 032856 86 IAIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 124 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~ 124 (132)
+.-.|++.+.+.|++.|+++... ...++.++|.--.|..
T Consensus 111 IG~rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 111 VGLENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKV 152 (163)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 34459999999999999998653 3456777776666654
No 209
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=51.52 E-value=41 Score=19.61 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=25.7
Q ss_pred ECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCeE
Q 032856 88 IRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 125 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~i 125 (132)
-.|++.+.+.|++.|+++... ...++.++|.-.+|..+
T Consensus 63 ~rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 63 ERNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence 348999999999999998653 34567777776666543
No 210
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=51.48 E-value=50 Score=20.71 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=28.9
Q ss_pred EEECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCeE
Q 032856 86 IAIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 125 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~i 125 (132)
+.-.|++.+.+.|++.|+++... ...++.++|.--+|..+
T Consensus 102 IG~rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 102 IGARNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 34459999999999999998653 34567777766666543
No 211
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=51.11 E-value=55 Score=19.99 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=30.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEec
Q 032856 10 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMEL 65 (132)
Q Consensus 10 ~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (132)
.+++=++|.|.|.+++.+-=.. +|.+.............-+.-.+|+..+.++..
T Consensus 72 ~sv~aiafrV~Da~~A~~rA~~-~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr 126 (139)
T PF14696_consen 72 PSVCAIAFRVDDAAAAYERAVA-LGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDR 126 (139)
T ss_dssp SEEEEEEEEES-HHHHHHHHHH-TT--EEEEEEETT-BEEEEEE-CCC-EEEEEE-
T ss_pred CEEEEEEEEeCCHHHHHHHHHH-cCCcCcccCCCCCcEeeeeEEccCCCEEEEEec
Confidence 4678899999999999888666 788877653222111112223346666666654
No 212
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=50.20 E-value=39 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=17.8
Q ss_pred EEEEECCHHHHHHHHHhCCCeE
Q 032856 84 TCIAIRDVSKLKMILDKAGISY 105 (132)
Q Consensus 84 i~~~v~d~~~~~~~l~~~g~~~ 105 (132)
+=+.+.|++.+.++|+++|...
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~ 27 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKF 27 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCccc
Confidence 4456779999999999998654
No 213
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.94 E-value=22 Score=18.10 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=16.3
Q ss_pred EEEEE---CCHHHHHHHHHhCCCeE
Q 032856 84 TCIAI---RDVSKLKMILDKAGISY 105 (132)
Q Consensus 84 i~~~v---~d~~~~~~~l~~~g~~~ 105 (132)
+.+.+ +|.+.+.+.|+++|+++
T Consensus 45 ~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 45 LRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCcC
Confidence 34444 36788999999999863
No 214
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=49.90 E-value=31 Score=16.70 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=11.5
Q ss_pred HHHHHHhCCCeEEccCC
Q 032856 94 LKMILDKAGISYTLSKS 110 (132)
Q Consensus 94 ~~~~l~~~g~~~~~~~~ 110 (132)
-.+.|+++|+.+...++
T Consensus 20 Q~~~L~~~Gi~~~~~~~ 36 (47)
T PF13986_consen 20 QIRWLRRNGIPFVVRAD 36 (47)
T ss_pred HHHHHHHCCCeeEECCC
Confidence 36788889997554443
No 215
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=49.19 E-value=52 Score=19.14 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=30.1
Q ss_pred ECCHHHHHHHHHhCCCeEEcc------CCCccEEEEeCCCCCeEEEEeeC
Q 032856 88 IRDVSKLKMILDKAGISYTLS------KSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~~~------~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
..++...+++|++.| .+..+ ..|.-.+...|++|.+.+-....
T Consensus 23 ik~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 23 IKNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 346677889999988 44322 13566778899999998876543
No 216
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=48.73 E-value=58 Score=20.97 Aligned_cols=39 Identities=13% Similarity=-0.010 Sum_probs=28.5
Q ss_pred EECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCeE
Q 032856 87 AIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 125 (132)
Q Consensus 87 ~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~i 125 (132)
.-.|++.+.+.|++.|+++... ...++.++|.--.|..+
T Consensus 110 G~rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 110 GEQNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence 3459999999999999998653 33467777766667653
No 217
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=48.51 E-value=63 Score=20.53 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=25.6
Q ss_pred EEEEECCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEE
Q 032856 84 TCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 126 (132)
Q Consensus 84 i~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~ie 126 (132)
+.+..++.+++.+.|++.|+.+..... .-++.+++|..+.
T Consensus 47 i~~~~~~~~~l~~~L~~~G~~ite~~~---~~~l~~~~g~llD 86 (174)
T PF10706_consen 47 IFVPREDQAELRALLKELGYRITETTD---YGFLADDDGRLLD 86 (174)
T ss_dssp EEEEGGGHHHHHHHHHHTT-EEEEEET---EEEEEETTTEEEE
T ss_pred EEEEcchhHHHHHHHHHCCCEEEEecc---ccEEEcCCCCEEE
Confidence 555556899999999999998765322 2235555554443
No 218
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.37 E-value=36 Score=17.03 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=17.8
Q ss_pred eEEEEEECC---HHHHHHHHHhCCCeEE
Q 032856 82 RHTCIAIRD---VSKLKMILDKAGISYT 106 (132)
Q Consensus 82 ~hi~~~v~d---~~~~~~~l~~~g~~~~ 106 (132)
.++.+.+.+ ++.+.+.|++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 455666655 4578999999998753
No 219
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=47.52 E-value=15 Score=19.56 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=11.4
Q ss_pred HHHHhhcCCeeeccCC
Q 032856 27 EFYQNILGLEINEARP 42 (132)
Q Consensus 27 ~fy~~~lg~~~~~~~~ 42 (132)
.-|++.||+++..+.+
T Consensus 45 ~AYT~~m~L~PGdEFe 60 (71)
T PF14250_consen 45 SAYTKQMGLKPGDEFE 60 (71)
T ss_pred HHHHHHhCCCCCCEEE
Confidence 3578888888877644
No 220
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=47.20 E-value=62 Score=21.17 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=28.3
Q ss_pred EECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCeE
Q 032856 87 AIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANAL 125 (132)
Q Consensus 87 ~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~i 125 (132)
.-.|++.+.+.|++.|+++... ...++.++|.--.|..+
T Consensus 113 G~rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 113 GQANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 3459999999999999998643 34467777766666543
No 221
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=47.14 E-value=33 Score=16.74 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=12.3
Q ss_pred cEEEEeCCCCCeEEEE
Q 032856 113 PAIFTRDPDANALEFT 128 (132)
Q Consensus 113 ~~~~~~Dp~G~~iel~ 128 (132)
-+..+.||||....+.
T Consensus 29 GsY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 29 GSYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEEECCCCCEEEEE
Confidence 4567899999877764
No 222
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=47.07 E-value=22 Score=14.24 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=9.0
Q ss_pred cEEEEeCCCCCeE
Q 032856 113 PAIFTRDPDANAL 125 (132)
Q Consensus 113 ~~~~~~Dp~G~~i 125 (132)
-...+.|++|++|
T Consensus 7 I~~i~~D~~G~lW 19 (24)
T PF07494_consen 7 IYSIYEDSDGNLW 19 (24)
T ss_dssp EEEEEE-TTSCEE
T ss_pred EEEEEEcCCcCEE
Confidence 3457789999876
No 223
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=46.68 E-value=60 Score=21.46 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=27.8
Q ss_pred EEECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCe
Q 032856 86 IAIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 124 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~ 124 (132)
+.-.|++.+.+.|++.|+++... ...++.++|.-.+|..
T Consensus 136 IG~rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~v 177 (213)
T PRK13493 136 VGEKNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQA 177 (213)
T ss_pred HhHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 33459999999999999998653 3346777666556643
No 224
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=46.42 E-value=40 Score=18.51 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=26.2
Q ss_pred EEEC-CHHHHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeE
Q 032856 86 IAIR-DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANAL 125 (132)
Q Consensus 86 ~~v~-d~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~i 125 (132)
+.|+ +|..+.+.|+++|+++.... .+-..+.++.-+.|..
T Consensus 4 IAVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~m 49 (80)
T PF03698_consen 4 IAVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMM 49 (80)
T ss_pred EEecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccc
Confidence 3454 78999999999999986532 1334555555555443
No 225
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=46.38 E-value=35 Score=21.24 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=49.9
Q ss_pred EEEEeCCHHHHHHHHHhhcCCeeeccCCC---CCCCceeEEEEeCCeEEEEEecCCCCCCCCCCCCCCCceEEEEEE---
Q 032856 15 VGILCENLERSLEFYQNILGLEINEARPH---DKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI--- 88 (132)
Q Consensus 15 v~i~v~d~~~~~~fy~~~lg~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v--- 88 (132)
|...|+|.+.-.+-..+.++-........ .......+-+...+..++++.-..+.. ...+..|+-++-
T Consensus 37 Iic~~~d~~~F~~~l~~~f~~~~~f~~~~~~i~~~~~~~~~F~~~~~~~EiF~Q~~Pv~------~QnayrHm~iE~rLL 110 (152)
T PF14091_consen 37 IICEVPDPEAFEQLLQSLFGQFEGFTIKEKTIRGEPSIVANFRYEGFPFEIFGQPIPVE------EQNAYRHMLIEHRLL 110 (152)
T ss_pred EEEEeCCHHHHHHHHHHHhccCCCceeeeceeCCceeEEEEEEECCceEEEeecCCChh------hHHHHHHHHHHHHHH
Confidence 44667888887777777665544322221 112224445666777888876544322 124455655443
Q ss_pred ----CCHHHHHHHHHhCCCeEE
Q 032856 89 ----RDVSKLKMILDKAGISYT 106 (132)
Q Consensus 89 ----~d~~~~~~~l~~~g~~~~ 106 (132)
+++.+-.-+|++.|++-.
T Consensus 111 ~~~g~~~r~~Ii~LK~~GlKTE 132 (152)
T PF14091_consen 111 ELHGPSFREEIIELKESGLKTE 132 (152)
T ss_pred HhcCHHHHHHHHHHHHcCCcch
Confidence 356666778888888754
No 226
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=46.33 E-value=66 Score=20.09 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=28.1
Q ss_pred EEECCHHHHHHHHHhCCCeEEccC---CCccEEEEeCCCCCe
Q 032856 86 IAIRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 124 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~ 124 (132)
+.-.|++.+.+.|++.|+++.... ..++.++|.--+|..
T Consensus 104 IG~rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 104 IGERNIESAKETLKKLGIRIVAEDVGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEEECCCCEE
Confidence 344699999999999999986532 346677766556644
No 227
>PRK03094 hypothetical protein; Provisional
Probab=46.18 E-value=40 Score=18.54 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=25.3
Q ss_pred EEC-CHHHHHHHHHhCCCeEEccC-----CCccEEEEeCCCCCeE
Q 032856 87 AIR-DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANAL 125 (132)
Q Consensus 87 ~v~-d~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G~~i 125 (132)
.|+ +|..+.+.|+++|+++..-. .+--.+.++.-+.|..
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~m 49 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVM 49 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCccee
Confidence 454 78899999999999985322 2234455555555443
No 228
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=45.92 E-value=15 Score=24.41 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHhCCCeEEccC--CCccEEEEeCCCCCeEEE
Q 032856 89 RDVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEF 127 (132)
Q Consensus 89 ~d~~~~~~~l~~~g~~~~~~~--~~~~~~~~~Dp~G~~iel 127 (132)
.|-+.+.+.| .|+.+...+ .+...|...||+|+..-+
T Consensus 187 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (228)
T PRK06704 187 ERPELLTKLL--PTIDFTKLPSKQPVLLFNVKQPSSYSCML 225 (228)
T ss_pred cCHHHHHHHh--ccceeeecccccceEEEEeeCCCccchhh
Confidence 3444444533 455555433 456788889999987654
No 229
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=45.17 E-value=60 Score=18.67 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=17.5
Q ss_pred HHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEeeC
Q 032856 94 LKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 94 ~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
+.+.|++.|+. ..++|+...++.+|-+++++
T Consensus 27 v~~~L~~~Gi~-------~ysIfl~~~~~~LF~~~E~~ 57 (102)
T TIGR02625 27 LKEVLKSHGAH-------NYSIFLDKQRNLLFAYVEIE 57 (102)
T ss_pred HHHHHHHCCCe-------EEEEEEECCCCeEEEEEEEC
Confidence 45566666764 34555554455666666553
No 230
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=44.05 E-value=42 Score=19.90 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=30.1
Q ss_pred ECCHHHHHHHHHhCCCeEEccC------CCccEEEEeCCCCCeEEEEeeC
Q 032856 88 IRDVSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~~~~------~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
+.++...++.|++.|- +..+. .+.-.+...|++|.+.+-....
T Consensus 24 ik~Fn~~~~~L~~~G~-V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~ 72 (118)
T PRK10234 24 ISRFNRAFDTLCQQGR-VGVGRSSGRFKPRVVVALALDEQQRVVDTLFMK 72 (118)
T ss_pred HHHHHHHHHHHHhcCc-eEEecccCccCCCeEEEEEECCCCcEEeeEEEc
Confidence 3467778889999885 33222 3556678899999998866543
No 231
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=43.44 E-value=62 Score=18.37 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCceEEEEEECCHHHHHHHHHhCCCe--EEccC----------C------CccEEEEeCCCCCeE
Q 032856 79 GRDRHTCIAIRDVSKLKMILDKAGIS--YTLSK----------S------GRPAIFTRDPDANAL 125 (132)
Q Consensus 79 ~~~~hi~~~v~d~~~~~~~l~~~g~~--~~~~~----------~------~~~~~~~~Dp~G~~i 125 (132)
.+..-+++.+++.++..+.+++.++. +...+ . .....|+.||+|++.
T Consensus 58 ~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 58 KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 34667888889988888888877654 32211 1 457889999999864
No 232
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=42.85 E-value=77 Score=20.76 Aligned_cols=39 Identities=8% Similarity=0.074 Sum_probs=28.2
Q ss_pred EEECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCe
Q 032856 86 IAIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 124 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~ 124 (132)
+.-.|++.+.+.|++.|+++... ...++.++|.--+|..
T Consensus 124 IG~rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~v 165 (201)
T PRK13487 124 VGERNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGKV 165 (201)
T ss_pred chHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 44459999999999999998653 3346677666556654
No 233
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=41.57 E-value=95 Score=21.13 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEE
Q 032856 91 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 127 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel 127 (132)
.+++.+..+++|+++...+-..-++|+.||+++.+-+
T Consensus 150 ~~~i~k~wk~rgi~F~~~k~slISV~~h~~d~~~lFv 186 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNNDKASLISVFLHDPDDNSLFV 186 (250)
T ss_pred HHHHHHHHHHcCceeCCCceEEEEEEEEcCCCCeEEe
Confidence 4456778888999994444456778888888876543
No 234
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=40.86 E-value=72 Score=20.89 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=23.2
Q ss_pred EECCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCC
Q 032856 87 AIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDA 122 (132)
Q Consensus 87 ~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G 122 (132)
.+.+++++.+.|++.|+.+.....+...+.+.|..+
T Consensus 183 ~~~s~~~f~~~L~~~g~~v~~~~~~~~~~~~~~~~~ 218 (242)
T PF03432_consen 183 KSSSFEDFIERLEEKGIEVRRKRGKYISYKLKDKNK 218 (242)
T ss_pred hCCCHHHHHHHHHHCCCEEEEcCCCeEEEecCCCCc
Confidence 346888899999999999883333333334444443
No 235
>PRK10562 putative acetyltransferase; Provisional
Probab=40.48 E-value=79 Score=18.70 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEe-CCHHHHHHHHHhhcCCeeeccCCCC
Q 032856 15 VGILC-ENLERSLEFYQNILGLEINEARPHD 44 (132)
Q Consensus 15 v~i~v-~d~~~~~~fy~~~lg~~~~~~~~~~ 44 (132)
+.+.| .+=..+..||++ +|+........+
T Consensus 100 ~~~~v~~~N~~s~~~y~k-~Gf~~~~~~~~~ 129 (145)
T PRK10562 100 LSLEVYQKNQRAVNFYHA-QGFRIVDSAWQE 129 (145)
T ss_pred EEEEEEcCChHHHHHHHH-CCCEEccccccC
Confidence 44444 333689999999 899998754433
No 236
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=39.54 E-value=58 Score=22.79 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=41.6
Q ss_pred EEEeCCHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe-EEEEEecCCCCCCCCCCCCCCCceEEEEEECCHHHH
Q 032856 16 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 94 (132)
Q Consensus 16 ~i~v~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~~~v~d~~~~ 94 (132)
+..+-|+-+|..|+.++++.++..... ..+ +|+. -..++...+...+. +.+.-+.++.+
T Consensus 172 GVTtLDvVRA~tFv~~~~~~~p~~~v~-----VPV----IGGHaG~TIlPLlSQ~~p~-----------~~~~~~~~~~L 231 (345)
T KOG1494|consen 172 GVTTLDVVRANTFVAEVLNLDPAEDVD-----VPV----IGGHAGITIIPLLSQCKPP-----------FRFTDDEIEAL 231 (345)
T ss_pred ceehhhhhhHHHHHHHHhCCCchhcCC-----cce----ecCcCCceEeeecccCCCc-----------ccCCHHHHHHH
Confidence 445568889999999999999733221 111 1222 22222222221110 22333468888
Q ss_pred HHHHHhCCCeEEcc
Q 032856 95 KMILDKAGISYTLS 108 (132)
Q Consensus 95 ~~~l~~~g~~~~~~ 108 (132)
..|.+..|-++...
T Consensus 232 t~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 232 THRIQNGGTEVVKA 245 (345)
T ss_pred HHHHHhCCceEEEe
Confidence 89999999887653
No 237
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=39.46 E-value=92 Score=20.96 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=28.0
Q ss_pred EEECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCe
Q 032856 86 IAIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 124 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~ 124 (132)
+.-.|++.+.+.|++.|+++... ...++.++|.--+|..
T Consensus 122 IG~RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f~~~TG~v 163 (233)
T PRK13489 122 IGDRNADFVRRYLALERIRITAEDLQGVHPRKVAFMPRTGRA 163 (233)
T ss_pred hhHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 34459999999999999998643 3346677666556654
No 238
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=38.99 E-value=96 Score=19.52 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=23.9
Q ss_pred CCceEEEEEEC--CHHHHHHHHHhCCCeEE
Q 032856 79 GRDRHTCIAIR--DVSKLKMILDKAGISYT 106 (132)
Q Consensus 79 ~~~~hi~~~v~--d~~~~~~~l~~~g~~~~ 106 (132)
..+.++++... |+..+.+++++.|.++.
T Consensus 104 ~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~ 133 (160)
T TIGR00288 104 PNIDAVALVTRDADFLPVINKAKENGKETI 133 (160)
T ss_pred CCCCEEEEEeccHhHHHHHHHHHHCCCEEE
Confidence 45678999886 89999999999999874
No 239
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=38.69 E-value=12 Score=20.05 Aligned_cols=15 Identities=13% Similarity=0.532 Sum_probs=13.2
Q ss_pred EEeCCHHHHHHHHHh
Q 032856 17 ILCENLERSLEFYQN 31 (132)
Q Consensus 17 i~v~d~~~~~~fy~~ 31 (132)
|.+.|+|+++.||+.
T Consensus 4 i~I~dIE~AIN~WR~ 18 (71)
T PF12512_consen 4 ISITDIEAAINYWRA 18 (71)
T ss_pred cCHHHHHHHHHHHHh
Confidence 567899999999987
No 240
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=38.52 E-value=58 Score=16.79 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=16.7
Q ss_pred eeeeEEEEe-CCHHHHHHHHHhhcCCe
Q 032856 11 SVHHVGILC-ENLERSLEFYQNILGLE 36 (132)
Q Consensus 11 ~~~hv~i~v-~d~~~~~~fy~~~lg~~ 36 (132)
++.++.+.| .+=..+..||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 455666666 344558899987 7874
No 241
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=38.43 E-value=29 Score=18.13 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=14.8
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCee
Q 032856 14 HVGILCENLERSLEFYQNILGLEI 37 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~ 37 (132)
++.+.+ -+.+..||.+ +||++
T Consensus 59 ~i~l~~--~~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 59 KIFLFT--NPAAIKFYEK-LGFEE 79 (79)
T ss_dssp EEEEEE--EHHHHHHHHH-TTEEE
T ss_pred cEEEEE--cHHHHHHHHH-CcCCC
Confidence 344444 2689999998 89874
No 242
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=36.58 E-value=55 Score=19.93 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=21.1
Q ss_pred eeEEEEe--CCHHHHHHHHHhhcCCeeeccCC
Q 032856 13 HHVGILC--ENLERSLEFYQNILGLEINEARP 42 (132)
Q Consensus 13 ~hv~i~v--~d~~~~~~fy~~~lg~~~~~~~~ 42 (132)
..+.+.| +| ..|..||++ +||.......
T Consensus 127 ~~~~L~V~~~N-~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 127 DKIVLEVRESN-EAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred ceEEEEEecCC-hHHHHHHHH-cCCEEEeeeh
Confidence 4555665 45 599999999 9999887655
No 243
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=36.48 E-value=73 Score=17.17 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=27.1
Q ss_pred CceEEEEEEC-CHHHHHHHHHhCCCeEE--c-c------------CCCccEEEEeCCCCCe
Q 032856 80 RDRHTCIAIR-DVSKLKMILDKAGISYT--L-S------------KSGRPAIFTRDPDANA 124 (132)
Q Consensus 80 ~~~hi~~~v~-d~~~~~~~l~~~g~~~~--~-~------------~~~~~~~~~~Dp~G~~ 124 (132)
.+.-+++.++ +.+++.+.+++.+.... . . -.+.-.+++.||+|.+
T Consensus 35 ~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 35 DVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp TEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred CEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 4455666665 56777777777733321 1 1 1245788999999974
No 244
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=35.43 E-value=41 Score=14.21 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHhh
Q 032856 20 ENLERSLEFYQNI 32 (132)
Q Consensus 20 ~d~~~~~~fy~~~ 32 (132)
.|.+++..||++.
T Consensus 19 ~d~~~A~~~~~~A 31 (36)
T smart00671 19 KDLEKALEYYKKA 31 (36)
T ss_pred cCHHHHHHHHHHH
Confidence 6999999999874
No 245
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.31 E-value=78 Score=17.16 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=21.3
Q ss_pred ceEEEEEEC--CHHHHHHHHHhCCCeEEc
Q 032856 81 DRHTCIAIR--DVSKLKMILDKAGISYTL 107 (132)
Q Consensus 81 ~~hi~~~v~--d~~~~~~~l~~~g~~~~~ 107 (132)
...++++++ +++++.++|++.|+.+..
T Consensus 42 ~vlvGi~~~~~~~~~l~~~l~~~g~~~~d 70 (81)
T cd04907 42 RVLVGIQVPDADLDELKERLDALGYPYQE 70 (81)
T ss_pred eEEEEEEeChHHHHHHHHHHHHcCCCeEE
Confidence 356788876 678889999999998754
No 246
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=35.02 E-value=22 Score=17.50 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=15.1
Q ss_pred eEEEEeC---CHHHHHHHHHhhcC
Q 032856 14 HVGILCE---NLERSLEFYQNILG 34 (132)
Q Consensus 14 hv~i~v~---d~~~~~~fy~~~lg 34 (132)
.-++.+. ++++..+||+..|.
T Consensus 14 ~~giPi~~rs~v~~~~dWYk~Mfk 37 (50)
T smart00459 14 ESGIPQAPRSSVERPKDWYRTMFK 37 (50)
T ss_pred CCCCccccccCcccHHHHHHHHHH
Confidence 3344444 78999999999774
No 247
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=34.93 E-value=65 Score=16.15 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEeeC
Q 032856 91 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 91 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
+.+...+-.+.|-.+...... ...-..+|||..+-|.+..
T Consensus 6 ls~~ea~~l~~Gr~l~~~~~~-g~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 6 LSAEEARDLRHGRRLPAAGPP-GPVAAFAPDGRLVALLEER 45 (56)
T ss_dssp --HHHHHHHHTT---B------S-EEEE-TTS-EEEEEEEE
T ss_pred CCHHHHHHHhCCCccCCCCCC-ceEEEECCCCcEEEEEEcc
Confidence 344444555666655443222 2355789999999988764
No 248
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=33.65 E-value=57 Score=22.69 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.8
Q ss_pred CHHHHHHHHHhCCCeEE
Q 032856 90 DVSKLKMILDKAGISYT 106 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~ 106 (132)
|++.+.+|+.+.|+...
T Consensus 18 nl~~l~~ri~~~~~~tV 34 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTV 34 (294)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 78999999999999743
No 249
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=33.54 E-value=24 Score=24.04 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=14.9
Q ss_pred CccEEEEeCCCCCeEEEE
Q 032856 111 GRPAIFTRDPDANALEFT 128 (132)
Q Consensus 111 ~~~~~~~~Dp~G~~iel~ 128 (132)
....+|+.||+|..++.+
T Consensus 241 HSi~mYLidPeg~Fvd~~ 258 (280)
T KOG2792|consen 241 HSIFMYLIDPEGEFVDYY 258 (280)
T ss_pred eeEEEEEECCCcceehhh
Confidence 367899999999988754
No 250
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=33.47 E-value=1e+02 Score=17.97 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=33.2
Q ss_pred CceEEEEEECCHHHHHHHHHhCCCeEE--ccC----------CCc---------cEEEEeCCCCCeEEEE
Q 032856 80 RDRHTCIAIRDVSKLKMILDKAGISYT--LSK----------SGR---------PAIFTRDPDANALEFT 128 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~~g~~~~--~~~----------~~~---------~~~~~~Dp~G~~iel~ 128 (132)
++.-+++.+++.+.+.+.+++.++.+. .++ ... ...|+.|++|.+....
T Consensus 57 ~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 57 GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 456688888888888888877776542 111 011 4779999999876654
No 251
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=33.00 E-value=62 Score=19.43 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHhCCCeEEcc--CCCccEEEEeCCC
Q 032856 89 RDVSKLKMILDKAGISYTLS--KSGRPAIFTRDPD 121 (132)
Q Consensus 89 ~d~~~~~~~l~~~g~~~~~~--~~~~~~~~~~Dp~ 121 (132)
++...+.+.|+++|+.+... .++.-.+.|.+++
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~ 84 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPE 84 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHH
Confidence 89999999999999987432 2344445555543
No 252
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=32.89 E-value=41 Score=19.27 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.2
Q ss_pred EeCCHHHHHHHHHhhcCCeee
Q 032856 18 LCENLERSLEFYQNILGLEIN 38 (132)
Q Consensus 18 ~v~d~~~~~~fy~~~lg~~~~ 38 (132)
..+++..+.+||.+ +||-..
T Consensus 33 G~~~~~~~L~YY~~-igWISe 52 (99)
T PF04659_consen 33 GHNNAADALDYYES-IGWISE 52 (99)
T ss_pred ccccHHHHHHHHHH-cCCcCH
Confidence 46789999999999 788543
No 253
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=32.87 E-value=75 Score=17.35 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=19.0
Q ss_pred EEECCHHHHHHHHHhCCCeEEccCC
Q 032856 86 IAIRDVSKLKMILDKAGISYTLSKS 110 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~~~ 110 (132)
+.=..+....++|++.|+++...+.
T Consensus 31 iSRtaVwK~Iq~Lr~~G~~I~s~~~ 55 (79)
T COG1654 31 ISRTAVWKHIQQLREEGVDIESVRG 55 (79)
T ss_pred ccHHHHHHHHHHHHHhCCceEecCC
Confidence 3334677778999999999987654
No 254
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=32.86 E-value=68 Score=16.16 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=10.5
Q ss_pred cEEEEeCCCCCeEEEE
Q 032856 113 PAIFTRDPDANALEFT 128 (132)
Q Consensus 113 ~~~~~~Dp~G~~iel~ 128 (132)
..|.|.|.+|+.+.+.
T Consensus 10 s~F~FYDen~~lVrv~ 25 (54)
T PF12142_consen 10 SSFLFYDENGQLVRVK 25 (54)
T ss_dssp -EEEEE-TTS-EEEEE
T ss_pred CeeEEECCCCCEEEEE
Confidence 3678889999988764
No 255
>PRK10314 putative acyltransferase; Provisional
Probab=32.82 E-value=64 Score=19.69 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcCCeeecc
Q 032856 23 ERSLEFYQNILGLEINEA 40 (132)
Q Consensus 23 ~~~~~fy~~~lg~~~~~~ 40 (132)
..+..||++ +||.....
T Consensus 118 ~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 118 AHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred HHHHHHHHH-CCCEECCC
Confidence 567899999 99998774
No 256
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=32.71 E-value=1.4e+02 Score=19.47 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=31.2
Q ss_pred CCCceEEEEEECCHHHHHHHHHhCCCeEEccC-----CCccEEEEeCCC
Q 032856 78 GGRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPD 121 (132)
Q Consensus 78 ~~~~~hi~~~v~d~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~ 121 (132)
+.++.+|.+.-.|+..+...++.-|+.+.... ++...++|.-.|
T Consensus 31 g~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 31 GKGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CCCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 34566777777799999999999999876432 234566665544
No 257
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=32.10 E-value=1.4e+02 Score=18.96 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=28.8
Q ss_pred EEECCHHHHHHHHHhCCCeEEcc---CCCccEEEEeCCCCCe
Q 032856 86 IAIRDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANA 124 (132)
Q Consensus 86 ~~v~d~~~~~~~l~~~g~~~~~~---~~~~~~~~~~Dp~G~~ 124 (132)
+.-.|.+.+.+.|++.|+++... ...++.++|.--+|..
T Consensus 111 IG~rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~v 152 (164)
T COG1871 111 IGERNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGRV 152 (164)
T ss_pred hhhHHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCcE
Confidence 44458999999999999998653 3456777776666653
No 258
>PHA02754 hypothetical protein; Provisional
Probab=31.95 E-value=78 Score=16.17 Aligned_cols=38 Identities=32% Similarity=0.370 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCeEEccC---CCccEEEEeCCCCCeEEEEee
Q 032856 93 KLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 93 ~~~~~l~~~g~~~~~~~---~~~~~~~~~Dp~G~~iel~~~ 130 (132)
++.++|.++|+-+.... ..+--+.+...||..+|+.+.
T Consensus 22 elkD~LSe~GiYi~RIkai~~SGdkIVVi~aD~I~i~ls~T 62 (67)
T PHA02754 22 ELKDILSEAGIYIDRIKAITTSGDKIVVITADAIKIELSET 62 (67)
T ss_pred HHHHHHhhCceEEEEEEEEEecCCEEEEEEcceEEEEEEee
Confidence 44677888898664322 222334555568999998775
No 259
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=31.84 E-value=1.2e+02 Score=21.60 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCe--EEEEEecCCCCCCCCC---CCCCCCceEEEEEECCHHHHH
Q 032856 21 NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGR---PEHGGRDRHTCIAIRDVSKLK 95 (132)
Q Consensus 21 d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~---~~~~~~~~hi~~~v~d~~~~~ 95 (132)
-++++++|=.+-||+....... .|..++.. -..++..+...-.+.. |..++...-=.|.-.+-.+..
T Consensus 54 ~~~~iR~FA~~~L~Lpdn~sY~--------~YadL~Rp~vvWnV~Aap~~sl~~~~WcFPi~Gcv~YrGyF~~~~A~~~a 125 (337)
T PF10023_consen 54 LAQQIRRFASEELGLPDNGSYR--------SYADLDRPYVVWNVFAAPEFSLEPKTWCFPIVGCVPYRGYFDEADARAEA 125 (337)
T ss_pred HHHHHHHHHHHhcCCCCCCChh--------hhhhcCCCcEEEEEEecCcccCCcceeeccccccccccCcCCHHHHHHHH
Confidence 3577889999999998766433 12222221 1122222222111100 011111111123334667778
Q ss_pred HHHHhCCCeEEcc--CCCccEEEEeCC
Q 032856 96 MILDKAGISYTLS--KSGRPAIFTRDP 120 (132)
Q Consensus 96 ~~l~~~g~~~~~~--~~~~~~~~~~Dp 120 (132)
+.|++.|..+... +-.+.--||.||
T Consensus 126 ~~L~~~GlDv~v~gV~AYSTLGwF~DP 152 (337)
T PF10023_consen 126 AELRAQGLDVYVGGVPAYSTLGWFDDP 152 (337)
T ss_pred HHHHHcCCceeEecccccccccccCCc
Confidence 9999999976543 334444566776
No 260
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.74 E-value=24 Score=25.14 Aligned_cols=85 Identities=12% Similarity=0.102 Sum_probs=45.2
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeeccCC-----CCCCCceeEEEEeCCeEE-EE---EecCCCCCCCCCCCCCCCceEE
Q 032856 14 HVGILCENLERSLEFYQNILGLEINEARP-----HDKLPYRGAWLWVGAEMI-HL---MELPNPDPLSGRPEHGGRDRHT 84 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~l---~~~~~~~~~~~~~~~~~~~~hi 84 (132)
=+++..+++++|++|=+. .++.-..-.. ..+.....+|+.....++ ++ +...+......+ -+
T Consensus 35 Ivava~~s~~~A~~fAq~-~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EK--------Pl 105 (351)
T KOG2741|consen 35 IVAVADPSLERAKEFAQR-HNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEK--------PL 105 (351)
T ss_pred EEEEecccHHHHHHHHHh-cCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecc--------cc
Confidence 355666899999999777 7884111111 011222444444433211 11 000011000011 26
Q ss_pred EEEECCHHHHHHHHHhCCCeEEc
Q 032856 85 CIAIRDVSKLKMILDKAGISYTL 107 (132)
Q Consensus 85 ~~~v~d~~~~~~~l~~~g~~~~~ 107 (132)
|..+++.+++++..+++|+.+..
T Consensus 106 a~n~~e~~~iveaA~~rgv~~me 128 (351)
T KOG2741|consen 106 AMNVAEAEEIVEAAEARGVFFME 128 (351)
T ss_pred cCCHHHHHHHHHHHHHcCcEEEe
Confidence 77778999999999999987753
No 261
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=30.45 E-value=69 Score=18.31 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=23.3
Q ss_pred EECCHHHHHHHHHhCCCeEEc--cCCCccEEEEeCCC
Q 032856 87 AIRDVSKLKMILDKAGISYTL--SKSGRPAIFTRDPD 121 (132)
Q Consensus 87 ~v~d~~~~~~~l~~~g~~~~~--~~~~~~~~~~~Dp~ 121 (132)
.+++...+.+.|+++|+.+.. ..++.-.+.|.+++
T Consensus 44 ~~~~~~~v~~~L~~~~I~~k~i~~~~~~llirf~~~~ 80 (101)
T PF13721_consen 44 QLPDAFQVEQALKAAGIAVKSIEQEGDSLLIRFDSTD 80 (101)
T ss_pred cCChHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHH
Confidence 346677899999999998743 23445555555553
No 262
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=30.26 E-value=95 Score=16.60 Aligned_cols=20 Identities=10% Similarity=-0.233 Sum_probs=15.0
Q ss_pred CccEEEEeCCCCCeEEEEee
Q 032856 111 GRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 111 ~~~~~~~~Dp~G~~iel~~~ 130 (132)
........|..||.+..+..
T Consensus 46 ~~~~~~~~D~fGN~v~~~~~ 65 (82)
T PF08379_consen 46 PARVREYTDFFGNRVHRFSF 65 (82)
T ss_pred CCEEEEEECCCCCEEEEEEE
Confidence 33567889999998877654
No 263
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=29.85 E-value=99 Score=18.40 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=21.8
Q ss_pred eeeeEEEEe-CCHHHHHHHHHhhcCCeeeccCC
Q 032856 11 SVHHVGILC-ENLERSLEFYQNILGLEINEARP 42 (132)
Q Consensus 11 ~~~hv~i~v-~d~~~~~~fy~~~lg~~~~~~~~ 42 (132)
++..+.+.| .+=.+++.||++ +||.......
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTGK 143 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeecc
Confidence 456666666 333678999987 8999877544
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=29.80 E-value=18 Score=15.33 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=13.3
Q ss_pred eCCHHHHHHHHHhhcCCe
Q 032856 19 CENLERSLEFYQNILGLE 36 (132)
Q Consensus 19 v~d~~~~~~fy~~~lg~~ 36 (132)
-.+.++|.+.|++.+.+.
T Consensus 14 ~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 14 LGDYEEALEYYQRALELD 31 (34)
T ss_dssp TT-HHHHHHHHHHHHHHS
T ss_pred hCCchHHHHHHHHHHHHC
Confidence 467889999999877554
No 265
>PLN00139 hypothetical protein; Provisional
Probab=29.64 E-value=48 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=22.7
Q ss_pred EEEECCHHHHHHHHHhCCCeEEccCCC
Q 032856 85 CIAIRDVSKLKMILDKAGISYTLSKSG 111 (132)
Q Consensus 85 ~~~v~d~~~~~~~l~~~g~~~~~~~~~ 111 (132)
+|.++|.+++-++++++|+++.+..++
T Consensus 194 ~F~t~d~~eve~~~~~~g~~~eW~~dg 220 (320)
T PLN00139 194 AFGTSDKAEAERRAKALGMDMEWLPNG 220 (320)
T ss_pred HhCCCCHHHHHHHHHHcCCeEEEcCCC
Confidence 466789999999999999999876655
No 266
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=29.49 E-value=1e+02 Score=16.72 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHhhcCCeeec
Q 032856 20 ENLERSLEFYQNILGLEINE 39 (132)
Q Consensus 20 ~d~~~~~~fy~~~lg~~~~~ 39 (132)
.+=..|..+|++ |||+...
T Consensus 63 ~~N~~s~~ly~k-lGf~~~~ 81 (86)
T PF08445_consen 63 ADNEASIRLYEK-LGFREIE 81 (86)
T ss_dssp TT-HHHHHHHHH-CT-EEEE
T ss_pred CCCHHHHHHHHH-cCCEEEE
Confidence 444789999998 8999875
No 267
>PRK14707 hypothetical protein; Provisional
Probab=29.40 E-value=1e+02 Score=28.10 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhCCCeEEcc---------CCCccEEEEeCCCCCeEEEE
Q 032856 90 DVSKLKMILDKAGISYTLS---------KSGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~~---------~~~~~~~~~~Dp~G~~iel~ 128 (132)
.+..+...|.++|+....- ...+-.+.+++|+|..|||-
T Consensus 2357 ~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQ 2404 (2710)
T PRK14707 2357 GLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQ 2404 (2710)
T ss_pred HHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEE
Confidence 3455678889999976531 12356668899999999974
No 268
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=29.32 E-value=58 Score=19.02 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=18.6
Q ss_pred eeeeEEEEeC-CHHHHHHHHHhhcCCeeec
Q 032856 11 SVHHVGILCE-NLERSLEFYQNILGLEINE 39 (132)
Q Consensus 11 ~~~hv~i~v~-d~~~~~~fy~~~lg~~~~~ 39 (132)
+...+.+.+. +-..|..||++ +||....
T Consensus 109 ~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~~ 137 (144)
T PRK10146 109 GAEMTELSTNVKRHDAHRFYLR-EGYEQSH 137 (144)
T ss_pred CCcEEEEecCCCchHHHHHHHH-cCCchhh
Confidence 4445655542 33479999998 8997654
No 269
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=29.19 E-value=78 Score=22.16 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=21.2
Q ss_pred eeeeeEEEEe------CCHHHHHHHHHhhcCCeee
Q 032856 10 VSVHHVGILC------ENLERSLEFYQNILGLEIN 38 (132)
Q Consensus 10 ~~~~hv~i~v------~d~~~~~~fy~~~lg~~~~ 38 (132)
-.++|++..| .|+++..++.++ .|+...
T Consensus 183 ~~~NH~T~~v~~l~~~~dI~~v~~~l~~-~G~~~n 216 (302)
T PF07063_consen 183 YHINHFTPRVNRLKKFLDIDAVNAFLKE-RGIPMN 216 (302)
T ss_dssp CS-SEEEEETTT-TT-S-HHHHHHHHHH-TT--B-
T ss_pred cccceeeceeecccccccHHHHHHHHHH-cCCCcc
Confidence 3689999999 999999999998 899988
No 270
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=28.98 E-value=1e+02 Score=17.86 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.7
Q ss_pred eeEEEEeCCHHHHHHHHHhhc
Q 032856 13 HHVGILCENLERSLEFYQNIL 33 (132)
Q Consensus 13 ~hv~i~v~d~~~~~~fy~~~l 33 (132)
..++|.-.|.++|..||.++.
T Consensus 82 c~~GL~Fade~EA~~F~k~v~ 102 (105)
T cd01205 82 CVVGLNFADETEAAEFRKKVL 102 (105)
T ss_pred cEEEEEECCHHHHHHHHHHHH
Confidence 467888899999999998863
No 271
>PF09299 Mu-transpos_C: Mu transposase, C-terminal; InterPro: IPR015378 This domain is found in various prokaryotic integrases and transposases. It adopts a beta-barrel structure with Greek-key topology []. ; PDB: 1BCO_A 1BCM_B.
Probab=28.90 E-value=78 Score=15.93 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=23.9
Q ss_pred eEEEEEECCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEE
Q 032856 82 RHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 126 (132)
Q Consensus 82 ~hi~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~ie 126 (132)
.-..+..+.+.+. ....+.+...|.+...+|+.+++| .++
T Consensus 21 ~~~~Y~~~~L~~~----~g~~V~vryDp~dl~~i~V~~~~g-~ic 60 (62)
T PF09299_consen 21 NGLRYWSPELAEY----IGQKVRVRYDPDDLSRIYVYDEDG-FIC 60 (62)
T ss_dssp EEEEEE-CHHHHS----S-SEEEEEE-GGGTTEEEEEETTS-EEE
T ss_pred CCeEEECHHHHhh----cCCEEEEEECcccCCEEEEEECCc-EEE
Confidence 3466666654443 333455556777778999999999 443
No 272
>PF11193 DUF2812: Protein of unknown function (DUF2812); InterPro: IPR021359 This is a bacterial family of uncharacterised proteins, however some members of this family are annotated as membrane proteins.
Probab=28.68 E-value=1.2e+02 Score=17.36 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=28.8
Q ss_pred eEEEEE----ECCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEe
Q 032856 82 RHTCIA----IRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 82 ~hi~~~----v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~ 129 (132)
.++.+. ..+.++..+.+++.|++......+.+.++-.+.++...++.+
T Consensus 40 Y~vd~~~~~~~~~~~~y~~~~e~~GW~~v~~~~~~~~if~~~~~~~~~~i~t 91 (115)
T PF11193_consen 40 YRVDFNDPKSKEEQKEYLEFFEEAGWEYVYSNFGGWQIFRKEEDDGPPEIYT 91 (115)
T ss_pred EEEEEccccchhhhHHHHHHHHHCCCEEEeccCcEEEEEEEcCCCCCCCCcC
Confidence 445555 346677788999999998842234455555554444335543
No 273
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=28.58 E-value=49 Score=20.85 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.9
Q ss_pred CccEEEEeCCCCCe
Q 032856 111 GRPAIFTRDPDANA 124 (132)
Q Consensus 111 ~~~~~~~~Dp~G~~ 124 (132)
+..++|+.+|||+.
T Consensus 142 DSEsfyminPdg~~ 155 (166)
T PF04759_consen 142 DSESFYMINPDGNG 155 (166)
T ss_pred CcceeEEECCCCCC
Confidence 57899999999873
No 274
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=28.31 E-value=1.3e+02 Score=17.39 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=23.0
Q ss_pred CCCceE-EEEEECCHHHHHHHHHhCCCeEEc
Q 032856 78 GGRDRH-TCIAIRDVSKLKMILDKAGISYTL 107 (132)
Q Consensus 78 ~~~~~h-i~~~v~d~~~~~~~l~~~g~~~~~ 107 (132)
+.-+.. +.+..++.|++.+.++++|+.+..
T Consensus 44 ~D~~~q~v~l~F~skE~Ai~yaer~G~~Y~V 74 (101)
T PF04800_consen 44 GDPLSQSVRLKFDSKEDAIAYAERNGWDYEV 74 (101)
T ss_dssp --SEEE-CEEEESSHHHHHHHHHHCT-EEEE
T ss_pred CChhhCeeEeeeCCHHHHHHHHHHcCCeEEE
Confidence 344454 899999999999999999998754
No 275
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=28.31 E-value=72 Score=15.46 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=11.9
Q ss_pred CCccEEEEeCCCCCeEE
Q 032856 110 SGRPAIFTRDPDANALE 126 (132)
Q Consensus 110 ~~~~~~~~~Dp~G~~ie 126 (132)
.|.+.+.+++.+|.+|-
T Consensus 3 ~g~~~f~L~a~ng~via 19 (49)
T PF07411_consen 3 DGQFRFRLKAGNGEVIA 19 (49)
T ss_dssp TSEEEEEEE-TTS-EEE
T ss_pred CCCEEEEEEcCCCCEEE
Confidence 46678888999998876
No 276
>PF12280 BSMAP: Brain specific membrane anchored protein; InterPro: IPR022065 This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.
Probab=28.29 E-value=82 Score=20.76 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=16.7
Q ss_pred CccEEEEeCCCCCeEEEEee
Q 032856 111 GRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 111 ~~~~~~~~Dp~G~~iel~~~ 130 (132)
..|++|+.+.||..+-|...
T Consensus 93 StWTfYLQaDdGKvVVfQsq 112 (207)
T PF12280_consen 93 STWTFYLQADDGKVVVFQSQ 112 (207)
T ss_pred ceeEEEEEcCCCCEEEEecc
Confidence 57999999999998877654
No 277
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=27.84 E-value=50 Score=20.67 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=11.4
Q ss_pred CccEEEEeCCCCC
Q 032856 111 GRPAIFTRDPDAN 123 (132)
Q Consensus 111 ~~~~~~~~Dp~G~ 123 (132)
++.++|+.+|||+
T Consensus 137 DSEsfyminPdg~ 149 (161)
T TIGR01570 137 DSESFYMINPEGN 149 (161)
T ss_pred CceeEEeECCCCC
Confidence 5789999999987
No 278
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=27.73 E-value=76 Score=24.97 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=13.0
Q ss_pred CHHHHHHHHHhCCCeE
Q 032856 90 DVSKLKMILDKAGISY 105 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~ 105 (132)
|++.+.+|+++.|+..
T Consensus 335 nl~~l~~ri~~~~~~~ 350 (672)
T PRK14581 335 NLDKLVQRISDLRVTH 350 (672)
T ss_pred hHHHHHHHHHhcCCCE
Confidence 7788888888888864
No 279
>PF15590 Imm15: Immunity protein 15
Probab=27.62 E-value=32 Score=18.20 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=13.2
Q ss_pred CccEEEEeCC-CCCeEEEEe
Q 032856 111 GRPAIFTRDP-DANALEFTQ 129 (132)
Q Consensus 111 ~~~~~~~~Dp-~G~~iel~~ 129 (132)
.+|..+|.|| ||-.++...
T Consensus 23 d~We~~y~DP~D~r~W~~~~ 42 (69)
T PF15590_consen 23 DGWETLYQDPRDGRYWEKSY 42 (69)
T ss_pred cchhhhccCCCCCceeEEec
Confidence 4677888898 466666553
No 280
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.26 E-value=64 Score=20.26 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.7
Q ss_pred ccEEEEeCCCCCeEEEEee
Q 032856 112 RPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 112 ~~~~~~~Dp~G~~iel~~~ 130 (132)
.-.+|+.||+|.+...+..
T Consensus 155 s~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 155 SAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp SSEEEEE-TTSEEEEEECS
T ss_pred ccEEEEEcCCCcEEEEEcc
Confidence 4689999999999887753
No 281
>PF15121 TMEM71: TMEM71 protein family
Probab=27.19 E-value=76 Score=19.32 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=14.6
Q ss_pred HHHhCCCeEEccCCCccEEEEeCCCCCe
Q 032856 97 ILDKAGISYTLSKSGRPAIFTRDPDANA 124 (132)
Q Consensus 97 ~l~~~g~~~~~~~~~~~~~~~~Dp~G~~ 124 (132)
||..+|+-+-.+. -|+-|.|||+
T Consensus 63 RLLtNGYYi~TED-----SFl~D~dGNI 85 (149)
T PF15121_consen 63 RLLTNGYYIWTED-----SFLCDEDGNI 85 (149)
T ss_pred hhhcCccEEEecc-----ceeecCCCCE
Confidence 5666776543333 3788888885
No 282
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=27.06 E-value=62 Score=17.20 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=12.8
Q ss_pred ECCHHHHHHHHHhCCCeEE
Q 032856 88 IRDVSKLKMILDKAGISYT 106 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~ 106 (132)
+.+.+++.+.|++.|+.+.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vT 37 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVT 37 (70)
T ss_dssp --SHHHHHHHHHHTT-T--
T ss_pred cCCHHHHHHHHHHcCCCcc
Confidence 4578899999999999874
No 283
>PRK10514 putative acetyltransferase; Provisional
Probab=27.05 E-value=1.4e+02 Score=17.45 Aligned_cols=19 Identities=21% Similarity=0.674 Sum_probs=15.6
Q ss_pred HHHHHHHHhhcCCeeeccCC
Q 032856 23 ERSLEFYQNILGLEINEARP 42 (132)
Q Consensus 23 ~~~~~fy~~~lg~~~~~~~~ 42 (132)
.++..||++ +||+......
T Consensus 110 ~~a~~~yek-~Gf~~~~~~~ 128 (145)
T PRK10514 110 EQAVGFYKK-MGFKVTGRSE 128 (145)
T ss_pred HHHHHHHHH-CCCEEecccc
Confidence 689999988 8999876544
No 284
>PHA02087 hypothetical protein
Probab=26.87 E-value=1e+02 Score=16.33 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=10.8
Q ss_pred cEEEEeCCCCCeEEEEee
Q 032856 113 PAIFTRDPDANALEFTQV 130 (132)
Q Consensus 113 ~~~~~~Dp~G~~iel~~~ 130 (132)
-..-+.|.||..|||-+.
T Consensus 45 v~y~lvdsdg~~ielpe~ 62 (83)
T PHA02087 45 VQYMLVDSDGVKIELPES 62 (83)
T ss_pred eeEEEEcCCCcEEECCcc
Confidence 334556777777776554
No 285
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=26.60 E-value=85 Score=16.46 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=18.2
Q ss_pred eEEEEEEC----CHHHHHHHHHhCCCeEE
Q 032856 82 RHTCIAIR----DVSKLKMILDKAGISYT 106 (132)
Q Consensus 82 ~hi~~~v~----d~~~~~~~l~~~g~~~~ 106 (132)
.++.++++ +++++.++|+++|+.+.
T Consensus 46 G~l~l~l~g~~~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 46 GILILELPGDDEEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHCCCeEE
Confidence 34555553 57888999999998764
No 286
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=26.05 E-value=1.7e+02 Score=18.02 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=30.9
Q ss_pred CceEEEEEEC-CHHHHHHHHHhCCCeE-----Ec----------cCCCccEEEEeCCCCCeEE
Q 032856 80 RDRHTCIAIR-DVSKLKMILDKAGISY-----TL----------SKSGRPAIFTRDPDANALE 126 (132)
Q Consensus 80 ~~~hi~~~v~-d~~~~~~~l~~~g~~~-----~~----------~~~~~~~~~~~Dp~G~~ie 126 (132)
++.-+++.++ +.+++.+.+++.++.. .. +..+.-..++.||+|+++.
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 3555677776 5556777777887542 11 1135678899999998874
No 287
>PF00594 Gla: Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; InterPro: IPR000294 The GLA (gamma-carboxyglutamic acid-rich) domain contains glutamate residues that have been post-translationally modified by vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla) [, , ]. All glutamic acid (Glu) residues present in the GLA domain are potential carboxylation sites; in coagulation proteins, all Gu residues are modified to Gla, while in osteocalcin and matrix Gla proteins only some Glu residues are modified to Gla. The GLA domain is responsible for the high-affinity binding of calcium ions. It starts at the N-terminal extremity of the mature form of proteins and ends with a conserved aromatic residue; a conserved Gla-x(3)-Gla-x-Cys motif [] is found in the middle of the domain which seems to be important for substrate recognition by the carboxylase. The 3D structure of the GLA domain has been solved [, ]. Calcium ions induce conformational changes in the GLA domain that and are necessary for the proper folding of the GLA domain. A common structural feature of functional GLA domains is the clustering of N-terminal hydrophobic residues into a hydrophobic patch that mediates interaction with the cell surface membrane []. Proteins known to contain a GLA domain include []: Coagulation factor X [] Coagulation factor VII [] Coagulation factor IX [] Coagulation factor XIV (vitamin K-dependent protein C) [] Vitamin K-dependent protein S [] Vitamin K-dependent protein Z [] Prothrombin Transthyretin Osteocalcin (also known as bone-Gla protein, BGP) Matrix Gla protein (MGP) [] Inter-alpha-trypsin inhibitor heavy chain H2 Growth arrest-specific protein 6 (Gas-6) [] ; GO: 0005509 calcium ion binding, 0005576 extracellular region; PDB: 1Q3M_A 1VZM_C 2PF1_A 1NL2_A 1NL1_A 2SPT_A 2PF2_A 2ZP0_L 1W0Y_L 2AEI_L ....
Probab=26.03 E-value=70 Score=15.04 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=9.4
Q ss_pred CHHHHHHHHHhhcC
Q 032856 21 NLERSLEFYQNILG 34 (132)
Q Consensus 21 d~~~~~~fy~~~lg 34 (132)
|...+.+||...+|
T Consensus 29 ~~~~t~~fw~~Y~g 42 (42)
T PF00594_consen 29 DTEGTNAFWKKYFG 42 (42)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred ChHhHHHHHHHhcC
Confidence 55677778877654
No 288
>PHA02097 hypothetical protein
Probab=25.60 E-value=91 Score=15.45 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=10.0
Q ss_pred EEeCCCCCeEEEE
Q 032856 116 FTRDPDANALEFT 128 (132)
Q Consensus 116 ~~~Dp~G~~iel~ 128 (132)
.+.||.||-++|+
T Consensus 45 vv~~~n~ng~~~~ 57 (59)
T PHA02097 45 VVKDANYNGFELV 57 (59)
T ss_pred EEecCCCCcEEEe
Confidence 5678888888775
No 289
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.55 E-value=68 Score=22.57 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.2
Q ss_pred CceEEEEEECCHHHHHHHHH
Q 032856 80 RDRHTCIAIRDVSKLKMILD 99 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~ 99 (132)
...||||.|+|++++.+-+.
T Consensus 168 tYP~icFavD~FdevF~dvv 187 (390)
T KOG2465|consen 168 TYPEICFAVDDFDEVFDDVV 187 (390)
T ss_pred ccceEEEEecCHHHhhhhhE
Confidence 44699999999999876544
No 290
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=25.48 E-value=2.1e+02 Score=20.19 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=24.6
Q ss_pred HHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEe
Q 032856 95 KMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 95 ~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~ 129 (132)
.+.+++.|+++...+.|+..+|. |+...-+.++.
T Consensus 57 ~~~~~~~gi~vvRR~sGGGaVyh-D~g~l~~s~i~ 90 (324)
T TIGR00545 57 LKELEEDNVNLFRRFSGGGAVFH-DLGNICFSFIT 90 (324)
T ss_pred HHHHHHcCCeEEEECCCCceEEE-cCCceEEEEEE
Confidence 57889999999988877766665 66555555554
No 291
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=25.40 E-value=63 Score=15.31 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=10.3
Q ss_pred ECCHHHHHHHHHh
Q 032856 88 IRDVSKLKMILDK 100 (132)
Q Consensus 88 v~d~~~~~~~l~~ 100 (132)
-+|||++..+|.+
T Consensus 20 PPDLdel~r~l~~ 32 (42)
T PF12221_consen 20 PPDLDELFRKLQD 32 (42)
T ss_pred CCCHHHHHHHHHH
Confidence 3599999888775
No 292
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=25.39 E-value=1.4e+02 Score=16.77 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEECCHHHH---HHHHHhCCCeEEc-cCCCccEEEEeCCC
Q 032856 82 RHTCIAIRDVSKL---KMILDKAGISYTL-SKSGRPAIFTRDPD 121 (132)
Q Consensus 82 ~hi~~~v~d~~~~---~~~l~~~g~~~~~-~~~~~~~~~~~Dp~ 121 (132)
.|+.|.+++.+.+ .+.|++.|++... ...+...+|++|.+
T Consensus 22 YhLEi~~~~~e~a~~l~~lL~~~~i~~k~~~r~~~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFNDEEFAEQLKELLNKFGINAKIIKRKNKYVVYLKDSE 65 (93)
T ss_dssp --EEEEES-HHHHHHHHHHHHHH----EEEEESSEEEEEE--HH
T ss_pred eEEEEecCCHHHHHHHHHHHHHcCCCceeeeecCceEEEEcCHH
Confidence 8999999864443 5666677887653 33466788888754
No 293
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=25.37 E-value=94 Score=21.41 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=19.5
Q ss_pred CHHHHHHHHHhCCCeEEccCCCccEEEEeCC
Q 032856 90 DVSKLKMILDKAGISYTLSKSGRPAIFTRDP 120 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp 120 (132)
+..+..+.++++|++....+++...+++.|+
T Consensus 12 ~a~~f~dyl~~~~i~~~~~~~~~~~lwl~d~ 42 (276)
T PRK10907 12 LAQAFVDYMATQGVILTIQQHNQSDIWLADE 42 (276)
T ss_pred HHHHHHHHHHHCCCcEEEecCCceEEEecCH
Confidence 4556677888888876443444555666654
No 294
>PF12021 DUF3509: Protein of unknown function (DUF3509); InterPro: IPR021898 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.
Probab=25.12 E-value=1.4e+02 Score=17.00 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.7
Q ss_pred ccCCCccEEEEeCCCCCe
Q 032856 107 LSKSGRPAIFTRDPDANA 124 (132)
Q Consensus 107 ~~~~~~~~~~~~Dp~G~~ 124 (132)
..++|+..+.+.|+.|..
T Consensus 21 ~rpDG~~llTL~d~~g~~ 38 (94)
T PF12021_consen 21 PRPDGSILLTLRDEQGVV 38 (94)
T ss_pred CCCCCCEEEEEEcCCceE
Confidence 456899999999999943
No 295
>PF05881 CNPase: 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase); InterPro: IPR008431 This family consists of the eukaryotic protein 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP). 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP) is one of the earliest myelin-related proteins expressed in differentiating oligodendrocytes and Schwann cells. CNP is abundant in the central nervous system and in oligodendrocytes. This protein is also found in mammalian photoreceptor cells, testis and lymphocytes. Although the biological function of CNP is unknown, it is thought to play a significant role in the formation of the myelin sheath, where it comprises 4% of total protein. CNP selectively cleaves 2',3'-cyclic nucleotides to produce 2'-nucleotides in vitro. Although physiologically relevant substrates with 2',3'-cyclic termini are still unknown, numerous cyclic phosphate containing RNAs occur transiently within eukaryotic cells. Other known protein families capable of hydrolysing 2',3'-cyclic nucleotides include tRNA ligases and plant cyclic phosphodiesterases. The catalytic domains from all these proteins contain two tetra-peptide motifs H-X-T/S-X, where X is usually a hydrophobic residue. Mutation of either histidine in CNP abolishes enzymatic activity [].; GO: 0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity, 0009214 cyclic nucleotide catabolic process, 0016020 membrane; PDB: 2YDB_A 2Y3X_B 2Y1P_A 2XMI_A 2YDD_A 2YDC_A 2ILX_A 1WOJ_A 2I3E_A.
Probab=25.06 E-value=58 Score=21.60 Aligned_cols=69 Identities=16% Similarity=0.079 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEEEEecCCCC-CCCCCCCCCCCceEEEEEEC-CHHH
Q 032856 23 ERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPD-PLSGRPEHGGRDRHTCIAIR-DVSK 93 (132)
Q Consensus 23 ~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~hi~~~v~-d~~~ 93 (132)
+.-++.|.+.|-+.++.-.-.+ ...++-+.+...+++++...... ..+......+.-.||.+.+. +++.
T Consensus 84 ~~Vk~sygkaftL~isaLfvTp--rT~GArv~L~e~ql~LWp~D~~ke~~~~~~lp~GSRAHiTLGcA~gVe~ 154 (235)
T PF05881_consen 84 EVVKKSYGKAFTLSISALFVTP--RTVGARVELTEEQLLLWPADVDKELSPSDSLPRGSRAHITLGCAAGVEA 154 (235)
T ss_dssp HHHHHHTT-EEEEEEEEEEE-S--SEEEEEEE--HHHHHTS-TCSSCSCSTTTTS-TTTTCEEEEEE-TT--T
T ss_pred HHHHHhccceEEEEEEEEEecc--ccccceeeechhhhccCCcchhcccCCCCCCCCCcceeEeeeccCCCcc
Confidence 4566788888877776532211 12334445554455555443322 11111223355579999996 4444
No 296
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=24.82 E-value=1.5e+02 Score=17.09 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=31.8
Q ss_pred CceEEEEEE------CCHHHHHHHHHhCCCeEE--ccC----------CCccEEEEeCCCCCeEEEE
Q 032856 80 RDRHTCIAI------RDVSKLKMILDKAGISYT--LSK----------SGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 80 ~~~hi~~~v------~d~~~~~~~l~~~g~~~~--~~~----------~~~~~~~~~Dp~G~~iel~ 128 (132)
++.-+++.+ ++.+++.+.+++.++.+. .++ .+....++.|++|.++...
T Consensus 56 ~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 56 GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 344455544 357777788888887642 111 2457889999999887654
No 297
>COG4832 Uncharacterized conserved protein [Function unknown]
Probab=24.79 E-value=1.1e+02 Score=19.70 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhCCCeEEccCCCccEEEEeCCCC
Q 032856 89 RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDA 122 (132)
Q Consensus 89 ~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~Dp~G 122 (132)
.+++.+.+.+++.|+.........+.+|+.|+--
T Consensus 159 ~s~ekm~efmke~~l~~~~~~~~H~EIYlsd~rr 192 (207)
T COG4832 159 ISFEKMHEFMKEEGLVRVHKSDYHREIYLSDKRR 192 (207)
T ss_pred ccHHHHHHHHHHhCccccccccceeeeeecCccc
Confidence 4899999999999998764444567899988753
No 298
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=24.66 E-value=1.3e+02 Score=17.84 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=20.4
Q ss_pred eeeeEEEEe-CCHHHHHHHHHhhcCCeeeccCC
Q 032856 11 SVHHVGILC-ENLERSLEFYQNILGLEINEARP 42 (132)
Q Consensus 11 ~~~hv~i~v-~d~~~~~~fy~~~lg~~~~~~~~ 42 (132)
++..+.+.| .+=.++..||++ +||+.....+
T Consensus 110 ~~~~i~~~v~~~N~~~i~~~~~-~GF~~~g~~~ 141 (155)
T PF13420_consen 110 GIHKIYLEVFSSNEKAINFYKK-LGFEEEGELK 141 (155)
T ss_dssp T-CEEEEEEETT-HHHHHHHHH-TTEEEEEEEE
T ss_pred CeEEEEEEEecCCHHHHHHHHh-CCCEEEEEEe
Confidence 344444443 334889999988 8999888654
No 299
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=24.56 E-value=49 Score=14.32 Aligned_cols=13 Identities=15% Similarity=0.695 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHhh
Q 032856 20 ENLERSLEFYQNI 32 (132)
Q Consensus 20 ~d~~~~~~fy~~~ 32 (132)
.|.+++..||++.
T Consensus 22 ~d~~~A~~~~~~A 34 (39)
T PF08238_consen 22 KDYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccchHHHHHHH
Confidence 4789999999863
No 300
>PTZ00330 acetyltransferase; Provisional
Probab=24.52 E-value=77 Score=18.57 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=15.7
Q ss_pred EEeCCHHHHHHHHHhhcCCeeec
Q 032856 17 ILCENLERSLEFYQNILGLEINE 39 (132)
Q Consensus 17 i~v~d~~~~~~fy~~~lg~~~~~ 39 (132)
+....-..+..||++ +||+...
T Consensus 119 l~l~~n~~a~~~y~k-~GF~~~~ 140 (147)
T PTZ00330 119 VILDCTEDMVAFYKK-LGFRACE 140 (147)
T ss_pred EEEecChHHHHHHHH-CCCEEec
Confidence 333334678999988 8998766
No 301
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=24.39 E-value=1e+02 Score=19.44 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=20.2
Q ss_pred eeeeEEEEe--CCHHHHHHHHHhhcCCeeec
Q 032856 11 SVHHVGILC--ENLERSLEFYQNILGLEINE 39 (132)
Q Consensus 11 ~~~hv~i~v--~d~~~~~~fy~~~lg~~~~~ 39 (132)
++..|.+.| .| ..|..||++ +||+...
T Consensus 156 g~~~I~l~v~~~N-~~A~~~Y~k-lGF~~~~ 184 (191)
T TIGR02382 156 GLTRLRVATQMGN-TAALRLYIR-SGANIES 184 (191)
T ss_pred CCCEEEEEeCCCC-HHHHHHHHH-cCCcccc
Confidence 556677766 44 689999998 8998655
No 302
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=24.32 E-value=2.5e+02 Score=20.00 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=24.3
Q ss_pred HHHHHhCCCeEEccCCCccEEEEeCCCCCeEEEEe
Q 032856 95 KMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 129 (132)
Q Consensus 95 ~~~l~~~g~~~~~~~~~~~~~~~~Dp~G~~iel~~ 129 (132)
.+.+++.|+++...+.|+.++|- |+...-+.++.
T Consensus 58 ~~~~~~~gI~vvRR~SGGGAVyh-D~Gnl~~s~i~ 91 (338)
T PRK03822 58 TRRMEEDNVRLARRSSGGGAVFH-DLGNTCFTFMA 91 (338)
T ss_pred HHHHHHcCCcEEEECCCCceEEE-cCCCcEEEEEe
Confidence 67899999999988887777665 65333455543
No 303
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=24.11 E-value=1.3e+02 Score=19.00 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=21.2
Q ss_pred eeeeeEEEEeC-CHHHHHHHHHhhcCCeeecc
Q 032856 10 VSVHHVGILCE-NLERSLEFYQNILGLEINEA 40 (132)
Q Consensus 10 ~~~~hv~i~v~-d~~~~~~fy~~~lg~~~~~~ 40 (132)
.++..+.+.|. +=..+..||++ +||+....
T Consensus 158 ~g~~~i~l~v~~~N~~a~~~yek-~Gf~~~~~ 188 (194)
T PRK10975 158 RGLTRLRVATQMGNLAALRLYIR-SGANIEST 188 (194)
T ss_pred cCCCEEEEEeCCCcHHHHHHHHH-CCCeEeEE
Confidence 35566777663 22688999987 89987663
No 304
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=23.95 E-value=1e+02 Score=17.36 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred eeeEEEEeC-CHHHHHHHHHhhcCCeeeccCC
Q 032856 12 VHHVGILCE-NLERSLEFYQNILGLEINEARP 42 (132)
Q Consensus 12 ~~hv~i~v~-d~~~~~~fy~~~lg~~~~~~~~ 42 (132)
+.++.+.|. .-..+..||++ +||+......
T Consensus 88 ~~~i~~~~~~~n~~~~~~y~~-~Gf~~~~~~~ 118 (131)
T TIGR01575 88 VNEIFLEVRVSNIAAQALYKK-LGFNEIAIRR 118 (131)
T ss_pred CCeEEEEEecccHHHHHHHHH-cCCCcccccc
Confidence 456666553 33678899988 8998876543
No 305
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=23.78 E-value=58 Score=16.20 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=13.4
Q ss_pred eCCHHHHHHHHHhhcCC
Q 032856 19 CENLERSLEFYQNILGL 35 (132)
Q Consensus 19 v~d~~~~~~fy~~~lg~ 35 (132)
.+.++..++||++-|-|
T Consensus 37 ~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 37 VKCPLLVISFYEEHLTY 53 (54)
T ss_pred hhCcHHHHHHHHHhccc
Confidence 36788899999987654
No 306
>PF11520 Cren7: Chromatin protein Cren7; InterPro: IPR020906 Cren7 is a chromatin protein found in Crenarchaeota and has a higher affinity for double-stranded DNA than for single-stranded DNA. The protein contains negative DNA supercoils and is associated with genomic DNA in vivo. Cren7 interacts with duplex DNA through a beta-sheet and a long flexible loop. Its binding to double-stranded DNA is without sequence specificity. There is approximately 1 Cren7 molecule for 12 bp of DNA. The function of Cren7 has not been completely determined but it is thought that the protein may have a role similar to that of archaeal proteins in Euryarchaea [].; GO: 0003690 double-stranded DNA binding, 0005737 cytoplasm; PDB: 3KXT_A 3LWH_A 3LWI_A 2JTM_A.
Probab=23.72 E-value=95 Score=15.93 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=9.0
Q ss_pred CCccEEEEeCCC-CCeEE
Q 032856 110 SGRPAIFTRDPD-ANALE 126 (132)
Q Consensus 110 ~~~~~~~~~Dp~-G~~ie 126 (132)
.|-....|+||+ |..|.
T Consensus 35 kGV~igLFk~P~tGk~fR 52 (60)
T PF11520_consen 35 KGVKIGLFKDPETGKYFR 52 (60)
T ss_dssp --EEEEEEE-TTT--EEE
T ss_pred CceEEEEEeCCCCCcchh
Confidence 355677889999 87664
No 307
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.69 E-value=80 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=24.1
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHhhcCCeeec
Q 032856 9 VVSVHHVGILCENLERSLEFYQNILGLEINE 39 (132)
Q Consensus 9 ~~~~~hv~i~v~d~~~~~~fy~~~lg~~~~~ 39 (132)
...-+.+++.-.|++++.+||++.|.-+.+.
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 3445678888899999999999988765544
No 308
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.47 E-value=2e+02 Score=18.06 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=37.0
Q ss_pred CceEEEEEECCHHHHHHHHHhCCCeEEc--c--------------C--------CCccEEEEeCCCCCeEEEE
Q 032856 80 RDRHTCIAIRDVSKLKMILDKAGISYTL--S--------------K--------SGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 80 ~~~hi~~~v~d~~~~~~~l~~~g~~~~~--~--------------~--------~~~~~~~~~Dp~G~~iel~ 128 (132)
+..-+++.+++.+...+...+.|+++.. + + .-.++-|+.|++|.+...+
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 4567999999999988888888887631 1 0 1247889999999887766
No 309
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=23.38 E-value=89 Score=13.96 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=16.3
Q ss_pred cCCCccEEEEeCCCCCeEEEEeeC
Q 032856 108 SKSGRPAIFTRDPDANALEFTQVD 131 (132)
Q Consensus 108 ~~~~~~~~~~~Dp~G~~iel~~~~ 131 (132)
.+.|...-|-.|+.|++..+....
T Consensus 12 d~~G~~~~y~YD~~g~l~~~t~~~ 35 (38)
T PF05593_consen 12 DPDGRTTRYTYDAAGRLTSVTDPD 35 (38)
T ss_pred cCCCCEEEEEECCCCCEEEEECCC
Confidence 455666668888888887775443
No 310
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=23.28 E-value=78 Score=23.77 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=12.8
Q ss_pred cEEEEeCCCCCeEEEE
Q 032856 113 PAIFTRDPDANALEFT 128 (132)
Q Consensus 113 ~~~~~~Dp~G~~iel~ 128 (132)
-.+.|.|||||...+-
T Consensus 206 A~I~l~dPdG~~~vf~ 221 (538)
T COG1389 206 ARIVLKDPDGNLVVFP 221 (538)
T ss_pred eEEEEECCCCcEEEec
Confidence 3588999999987663
No 311
>smart00300 ChSh Chromo Shadow Domain.
Probab=23.11 E-value=65 Score=16.46 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=14.0
Q ss_pred eCCHHHHHHHHHhhcCCe
Q 032856 19 CENLERSLEFYQNILGLE 36 (132)
Q Consensus 19 v~d~~~~~~fy~~~lg~~ 36 (132)
.+.++..++||++-|-|.
T Consensus 43 ~k~P~~vI~FYE~~l~~~ 60 (61)
T smart00300 43 VKCPQKVIRFYESHLTFQ 60 (61)
T ss_pred HHChHHHHHHHHHhCccC
Confidence 367888999999977653
No 312
>PF07901 DUF1672: Protein of unknown function (DUF1672); InterPro: IPR012873 This family is composed of hypothetical bacterial proteins of unknown function.
Probab=23.07 E-value=1.7e+02 Score=20.25 Aligned_cols=39 Identities=5% Similarity=0.101 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCeeeccCCCCCCCceeEEEEeCCeEEE
Q 032856 23 ERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIH 61 (132)
Q Consensus 23 ~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (132)
+++++|+.+.+++.+......+......+++...+..+.
T Consensus 40 k~~~~yfkd~y~t~VKv~NVVga~dga~V~Veced~~I~ 78 (277)
T PF07901_consen 40 KRAIQYFKDNYKTDVKVTNVVGARDGAVVYVECEDHPIV 78 (277)
T ss_pred HHHHHHHHHhcCceeEEEEEEccCCcEEEEEEecCCCce
Confidence 467899999999998776555555556777777653333
No 313
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=23.07 E-value=1e+02 Score=17.54 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.7
Q ss_pred eeeEEEEeCCHHHHHHHHHh
Q 032856 12 VHHVGILCENLERSLEFYQN 31 (132)
Q Consensus 12 ~~hv~i~v~d~~~~~~fy~~ 31 (132)
-.+|.|.-++++.+++||.+
T Consensus 53 tr~vviEFps~~~ar~~y~S 72 (96)
T COG5470 53 TRNVVIEFPSLEAARDCYNS 72 (96)
T ss_pred ccEEEEEcCCHHHHHHHhcC
Confidence 45677888999999999975
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=22.47 E-value=78 Score=12.96 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=13.5
Q ss_pred EeCCHHHHHHHHHhhcCCe
Q 032856 18 LCENLERSLEFYQNILGLE 36 (132)
Q Consensus 18 ~v~d~~~~~~fy~~~lg~~ 36 (132)
...+.++|++.|.+.+.+.
T Consensus 13 ~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 13 QLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HTT-HHHHHHHHHHHHHHS
T ss_pred HhCCHHHHHHHHHHHHHHC
Confidence 3568899999998876543
No 315
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.41 E-value=1.5e+02 Score=16.30 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=19.5
Q ss_pred ceEEEEEE--CCHHHHHHHHHhCCCeEE
Q 032856 81 DRHTCIAI--RDVSKLKMILDKAGISYT 106 (132)
Q Consensus 81 ~~hi~~~v--~d~~~~~~~l~~~g~~~~ 106 (132)
.+|+-|-- .+.+++.+.|++.|+++.
T Consensus 50 Sy~V~Fl~~~~s~eev~~ele~mga~in 77 (88)
T COG4009 50 SYYVVFLEEVESEEEVERELEDMGAEIN 77 (88)
T ss_pred eEEEEEEeccCCHHHHHHHHHHhCchhc
Confidence 35565544 489999999999998764
No 316
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=22.17 E-value=1.4e+02 Score=20.93 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=27.7
Q ss_pred CHHHHHHHHHhCCCeEEccC-----CCccEEEEeCCCC---CeEEEEe
Q 032856 90 DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDA---NALEFTQ 129 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~~~-----~~~~~~~~~Dp~G---~~iel~~ 129 (132)
|++.+.+.|+.+|+.-...+ ..+..+...+++| -.+|+-.
T Consensus 33 d~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ 80 (296)
T COG0264 33 DIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNC 80 (296)
T ss_pred CHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEec
Confidence 89999999999998654322 2456666777774 4555543
No 317
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=22.09 E-value=1.3e+02 Score=18.79 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=10.0
Q ss_pred CccEEEEeCCCCCeE
Q 032856 111 GRPAIFTRDPDANAL 125 (132)
Q Consensus 111 ~~~~~~~~Dp~G~~i 125 (132)
....+.+.||.||.+
T Consensus 144 ~pfTlIidDP~GnS~ 158 (161)
T PF03367_consen 144 RPFTLIIDDPSGNSF 158 (161)
T ss_dssp S-EEEEEEETTS--E
T ss_pred CCEEEEEECCCCcce
Confidence 357888999999965
No 318
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=21.98 E-value=1.5e+02 Score=15.99 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=33.4
Q ss_pred CCceEEEEEECC--HHHHHHHHHhCCCeEE--cc----------CCCccEEEEeCCCCCeEEE
Q 032856 79 GRDRHTCIAIRD--VSKLKMILDKAGISYT--LS----------KSGRPAIFTRDPDANALEF 127 (132)
Q Consensus 79 ~~~~hi~~~v~d--~~~~~~~l~~~g~~~~--~~----------~~~~~~~~~~Dp~G~~iel 127 (132)
..+..+++.++. .+.+.+.+++.+.... .. ..+...+++.||+|.++..
T Consensus 51 ~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 51 DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 345678888875 7888888888765432 11 1245678999999987654
No 319
>PHA01735 hypothetical protein
Probab=21.77 E-value=84 Score=16.71 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=16.4
Q ss_pred ECCHHHHHHHHHhCCCeEEc
Q 032856 88 IRDVSKLKMILDKAGISYTL 107 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~~ 107 (132)
+.|+.++.++|++++++-..
T Consensus 32 taDL~AA~d~Lk~NdItgv~ 51 (76)
T PHA01735 32 TADLRAACDWLKSNDITGVA 51 (76)
T ss_pred HHHHHHHHHHHHHCCCceee
Confidence 35899999999999997543
No 320
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=21.71 E-value=2.7e+02 Score=21.28 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=19.2
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeeccCCC
Q 032856 14 HVGILCENLERSLEFYQNILGLEINEARPH 43 (132)
Q Consensus 14 hv~i~v~d~~~~~~fy~~~lg~~~~~~~~~ 43 (132)
.++|+--=--+..+|=+.++|++-....+.
T Consensus 375 ~lGIClGmQ~aviE~ARnv~Gl~~AnS~Ef 404 (533)
T COG0504 375 FLGICLGMQLAVIEFARNVLGLEGANSTEF 404 (533)
T ss_pred EEEEchhHHHHHHHHHHHhcCCccCccccc
Confidence 344444333456688899999987765553
No 321
>PRK14707 hypothetical protein; Provisional
Probab=21.26 E-value=1.5e+02 Score=27.26 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=29.0
Q ss_pred CHHHHHHHHHhCCCeEEccC---------CCccEEEEeCCCCCeEEEE
Q 032856 90 DVSKLKMILDKAGISYTLSK---------SGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~~~---------~~~~~~~~~Dp~G~~iel~ 128 (132)
.+..+.+.|.++|++....+ ..+-...+++++|+.||+-
T Consensus 2588 ~v~~~~~~L~~~G~~~~rvKNtw~~~d~tY~GvN~~~r~~~g~~FEIQ 2635 (2710)
T PRK14707 2588 KVQAAQDALRRQGMTCVNLQNYFTSGDGTYRGINASFTDAEGYAFEVQ 2635 (2710)
T ss_pred HHHHHHHHHHhcCCeEEEeeccccCCCCcccceeeeEEcCCCCeEEEE
Confidence 56777889999999875321 1245668899999999974
No 322
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=20.81 E-value=1e+02 Score=20.50 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=11.9
Q ss_pred CCccEEEEeCCCCCe
Q 032856 110 SGRPAIFTRDPDANA 124 (132)
Q Consensus 110 ~~~~~~~~~Dp~G~~ 124 (132)
..+..+|-.||.||.
T Consensus 142 ~~gyqLy~SdPSGny 156 (249)
T KOG0178|consen 142 RYGYQLYQSDPSGNY 156 (249)
T ss_pred CcceEEEecCCCCCc
Confidence 346788999999985
No 323
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=20.79 E-value=1.3e+02 Score=18.11 Aligned_cols=16 Identities=13% Similarity=0.412 Sum_probs=13.4
Q ss_pred EEEeCCCCCeEEEEee
Q 032856 115 IFTRDPDANALEFTQV 130 (132)
Q Consensus 115 ~~~~Dp~G~~iel~~~ 130 (132)
.|+.|++|.++.....
T Consensus 123 tflID~~G~v~~~~~g 138 (153)
T TIGR02540 123 KYLVNPEGQVVKFWRP 138 (153)
T ss_pred EEEEcCCCcEEEEECC
Confidence 7999999999887643
No 324
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=20.77 E-value=1.7e+02 Score=19.15 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=24.5
Q ss_pred CHHHHHHHHHhCCCeEEcc-----CCCccEEEEeCCCCCeEEEE
Q 032856 90 DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFT 128 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~~~-----~~~~~~~~~~Dp~G~~iel~ 128 (132)
|++.+.+.|+..|+..... ...+.......|+|..--++
T Consensus 32 d~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lv 75 (198)
T PRK12332 32 DMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLV 75 (198)
T ss_pred CHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEE
Confidence 8999999999999865432 12344444555556544333
No 325
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=20.72 E-value=2.8e+02 Score=19.77 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=30.2
Q ss_pred ECCHHHHHHHHHhCCCeEEcc-CCCccEEEEeCCCCCeEEEEee
Q 032856 88 IRDVSKLKMILDKAGISYTLS-KSGRPAIFTRDPDANALEFTQV 130 (132)
Q Consensus 88 v~d~~~~~~~l~~~g~~~~~~-~~~~~~~~~~Dp~G~~iel~~~ 130 (132)
.-+.+++.+.+.+.+...... ..+.+..|+..++|..|+++..
T Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~ig~I~p 245 (322)
T COG2896 202 YLSLDEILRKLEERATLLPVRKRLHGRAKYFIHPDGGEIGFIAP 245 (322)
T ss_pred cccHHHHHHHHHhhccccccccccCCCceEEEeCCCcEEEEEcC
Confidence 336778888888855544333 4567788999999888887653
No 326
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=20.71 E-value=2e+02 Score=17.20 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=20.2
Q ss_pred EEEEECCHHHHHHHHHhCCCeEEcc
Q 032856 84 TCIAIRDVSKLKMILDKAGISYTLS 108 (132)
Q Consensus 84 i~~~v~d~~~~~~~l~~~g~~~~~~ 108 (132)
+.+.-+++..+.+.|+++|+.+...
T Consensus 63 ~vll~~EV~pvi~aL~~~GI~vtAl 87 (123)
T PF07485_consen 63 FVLLEDEVNPVISALRKNGIEVTAL 87 (123)
T ss_pred EEecHHHHHHHHHHHHHCCceEEEE
Confidence 4555568899999999999998754
No 327
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=20.68 E-value=1.3e+02 Score=14.88 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=13.5
Q ss_pred CHHHHHHHHHhCCCeEE
Q 032856 90 DVSKLKMILDKAGISYT 106 (132)
Q Consensus 90 d~~~~~~~l~~~g~~~~ 106 (132)
+++++.+.|++.|+.+.
T Consensus 10 ~~~~a~~~l~~~g~~~~ 26 (63)
T PF03793_consen 10 TYDEAKSILEAAGLTVN 26 (63)
T ss_dssp BHHHHHHHHHHTT-EEE
T ss_pred cHHHHHHHHHHCCCEEE
Confidence 68899999999999653
No 328
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=20.66 E-value=1.8e+02 Score=17.13 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=20.2
Q ss_pred eeeeEEEEe-CCHHHHHHHHHhhcCCeeecc
Q 032856 11 SVHHVGILC-ENLERSLEFYQNILGLEINEA 40 (132)
Q Consensus 11 ~~~hv~i~v-~d~~~~~~fy~~~lg~~~~~~ 40 (132)
++.++.+.| .+=.++..||++ +||+....
T Consensus 96 ~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~~ 125 (146)
T PRK09491 96 GVATLWLEVRASNAAAIALYES-LGFNEVTI 125 (146)
T ss_pred CCcEEEEEEccCCHHHHHHHHH-cCCEEeee
Confidence 455565655 333789999998 89987653
No 329
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=20.53 E-value=72 Score=11.85 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=12.5
Q ss_pred eCCHHHHHHHHHhhcCC
Q 032856 19 CENLERSLEFYQNILGL 35 (132)
Q Consensus 19 v~d~~~~~~fy~~~lg~ 35 (132)
..+.+++..+|...+..
T Consensus 14 ~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 14 LGDYDEALEYYEKALEL 30 (34)
T ss_pred HhhHHHHHHHHHHHHcc
Confidence 45778888888877654
No 330
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=20.47 E-value=1.7e+02 Score=18.06 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=22.2
Q ss_pred eeeeEEEEeC-CHHHHHHHHHhhcCCeeeccCC
Q 032856 11 SVHHVGILCE-NLERSLEFYQNILGLEINEARP 42 (132)
Q Consensus 11 ~~~hv~i~v~-d~~~~~~fy~~~lg~~~~~~~~ 42 (132)
++..|.+.|. +=.++.+||.+ +||.......
T Consensus 116 ~~~rv~~~v~~~N~~s~~~yek-~GF~~~~~~~ 147 (186)
T PRK15130 116 NLYKLYLIVDKENEKAIHIYRK-LGFEVEGELI 147 (186)
T ss_pred CceEEEEEEccCCHHHHHHHHH-CCCEEEEEEe
Confidence 4566777763 33589999999 8998876543
No 331
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=20.35 E-value=1.6e+02 Score=16.90 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCeEEccC-C-CccEEEEeCC
Q 032856 92 SKLKMILDKAGISYTLSK-S-GRPAIFTRDP 120 (132)
Q Consensus 92 ~~~~~~l~~~g~~~~~~~-~-~~~~~~~~Dp 120 (132)
..+.++|+.+|+++...+ . +...+++.|.
T Consensus 14 qaF~DYl~sqgI~~~i~~~~~~~~~lwl~de 44 (101)
T PF12122_consen 14 QAFIDYLASQGIELQIEPEGQGQFALWLHDE 44 (101)
T ss_dssp HHHHHHHHHTT--EEEE-SSSE--EEEES-G
T ss_pred HHHHHHHHHCCCeEEEEECCCCceEEEEeCH
Confidence 345789999999876553 2 3367777664
No 332
>PF11098 Chlorosome_CsmC: Chlorosome envelope protein C; InterPro: IPR020995 Chlorosomes are light-harvesting antennae found in green bacteria. This entry represents Chlorosome envelope protein C (CsmC) which is one of the proteins that exists in the chlorosome envelope and has been shown to exist as a homomultimer with CsmD in the chlorosome envelope []. CsmC is thought to be important in chlorosome elongation and shape [].
Probab=20.29 E-value=1.3e+02 Score=17.80 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=19.0
Q ss_pred eeeeEEEEeCCHHHHH-HHHHhhc
Q 032856 11 SVHHVGILCENLERSL-EFYQNIL 33 (132)
Q Consensus 11 ~~~hv~i~v~d~~~~~-~fy~~~l 33 (132)
-++.++|.|+|..++. +.|.+..
T Consensus 77 TidRVaITvKD~srsAg~lY~dav 100 (139)
T PF11098_consen 77 TIDRVAITVKDVSRSAGELYSDAV 100 (139)
T ss_pred eeeeEEEEehhhhhhhHHHHHHHH
Confidence 4889999999998876 8888753
No 333
>PRK09831 putative acyltransferase; Provisional
Probab=20.18 E-value=1.3e+02 Score=17.93 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=15.7
Q ss_pred HHHHHHHHhhcCCeeeccCC
Q 032856 23 ERSLEFYQNILGLEINEARP 42 (132)
Q Consensus 23 ~~~~~fy~~~lg~~~~~~~~ 42 (132)
..+..||++ +||......+
T Consensus 110 ~~a~~~Y~k-~Gf~~~g~~~ 128 (147)
T PRK09831 110 ITAKPFFER-YGFQTVKQQR 128 (147)
T ss_pred hhhHHHHHH-CCCEEeeccc
Confidence 578999999 8999887644
No 334
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=20.15 E-value=1.5e+02 Score=16.51 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCeeeccCC
Q 032856 25 SLEFYQNILGLEINEARP 42 (132)
Q Consensus 25 ~~~fy~~~lg~~~~~~~~ 42 (132)
+.+|+++-||+.+.-...
T Consensus 49 tQ~Ff~~~~Glpl~M~PN 66 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPN 66 (86)
T ss_pred hHHHHHhccCCceEecCC
Confidence 459999999999887543
No 335
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=20.15 E-value=30 Score=21.19 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=10.3
Q ss_pred EeCCCCCeEEEEe
Q 032856 117 TRDPDANALEFTQ 129 (132)
Q Consensus 117 ~~Dp~G~~iel~~ 129 (132)
=+-|||.+||+.|
T Consensus 65 HthpDGiRfEIhe 77 (163)
T TIGR02652 65 HTHPDGIRFEIHE 77 (163)
T ss_pred ccCCCceeEeHHH
Confidence 3569999999865
No 336
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=20.04 E-value=79 Score=16.03 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHhhcCCe
Q 032856 20 ENLERSLEFYQNILGLE 36 (132)
Q Consensus 20 ~d~~~~~~fy~~~lg~~ 36 (132)
+-++..++||++-|-|+
T Consensus 41 k~Pq~vI~FYE~~l~f~ 57 (58)
T PF01393_consen 41 KCPQKVIKFYESHLVFK 57 (58)
T ss_dssp HSHHHHHHHHHHTCEEE
T ss_pred HCcHHHHHHHHHHeeec
Confidence 46788899999877554
Done!