Query 032857
Match_columns 132
No_of_seqs 116 out of 1033
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_T 50S ribosomal protein L 100.0 5.2E-49 1.8E-53 282.7 8.3 88 23-111 1-88 (91)
2 3v2d_0 50S ribosomal protein L 100.0 3.8E-48 1.3E-52 275.4 8.6 84 23-107 1-84 (85)
3 3bbo_X Ribosomal protein L27; 100.0 6.8E-48 2.3E-52 306.9 -3.5 98 18-116 53-150 (198)
4 3r8s_W 50S ribosomal protein L 100.0 7.9E-44 2.7E-48 248.8 8.7 76 32-107 1-76 (76)
5 2ftc_O L27MT, MRP-L27, mitocho 100.0 5.2E-43 1.8E-47 241.0 6.8 68 24-91 1-69 (69)
6 2xha_A NUSG, transcription ant 95.9 0.0036 1.2E-07 49.5 2.6 52 48-119 86-140 (193)
7 2xhc_A Transcription antitermi 95.2 0.012 4.1E-07 49.6 3.5 50 47-116 125-177 (352)
8 3m7n_A Putative uncharacterize 93.5 0.14 4.9E-06 38.6 5.7 55 51-114 2-56 (179)
9 2je6_I RRP4, exosome complex R 92.0 0.28 9.7E-06 39.1 5.8 52 49-110 15-68 (251)
10 2nn6_I 3'-5' exoribonuclease C 88.9 0.085 2.9E-06 41.0 0.2 59 47-109 16-74 (209)
11 2ba0_A Archeal exosome RNA bin 86.4 0.69 2.4E-05 36.3 4.1 48 51-108 3-50 (229)
12 2d5d_A Methylmalonyl-COA decar 79.4 1.2 4E-05 27.4 2.3 37 45-91 19-55 (74)
13 2nn6_H Exosome complex exonucl 79.2 2.5 8.5E-05 34.9 4.9 51 49-108 38-88 (308)
14 1dcz_A Transcarboxylase 1.3S s 78.7 1.2 4.2E-05 27.8 2.3 37 45-91 22-58 (77)
15 2z0s_A Probable exosome comple 75.9 0.7 2.4E-05 36.2 0.6 51 50-108 9-59 (235)
16 1z6h_A Biotin/lipoyl attachmen 73.3 1.7 5.9E-05 26.6 1.9 36 45-90 13-48 (72)
17 1qjo_A Dihydrolipoamide acetyl 72.5 2.9 9.9E-05 26.3 2.8 42 40-91 15-56 (80)
18 1iyu_A E2P, dihydrolipoamide a 70.6 1.8 6E-05 27.5 1.5 39 43-91 16-54 (79)
19 2ejm_A Methylcrotonoyl-COA car 68.9 3 0.0001 27.9 2.4 37 45-91 28-64 (99)
20 1ghj_A E2, E2, the dihydrolipo 68.3 2.9 9.9E-05 26.4 2.1 39 43-91 19-57 (79)
21 1bdo_A Acetyl-COA carboxylase; 68.1 2.7 9.1E-05 26.6 1.9 37 45-91 25-61 (80)
22 2auk_A DNA-directed RNA polyme 66.1 3.6 0.00012 31.5 2.6 36 46-93 65-100 (190)
23 2lmc_B DNA-directed RNA polyme 61.7 4.8 0.00016 27.6 2.4 33 76-109 21-53 (84)
24 2l5t_A Lipoamide acyltransfera 61.3 1.8 6E-05 27.3 0.1 38 44-91 20-57 (77)
25 2dn8_A Acetyl-COA carboxylase 59.9 5.4 0.00018 26.6 2.3 36 45-90 31-66 (100)
26 2k7v_A Dihydrolipoyllysine-res 53.2 1.6 5.5E-05 28.3 -1.2 36 45-90 16-51 (85)
27 3crk_C Dihydrolipoyllysine-res 52.9 8 0.00027 25.0 2.2 41 40-90 20-60 (87)
28 2kcc_A Acetyl-COA carboxylase 52.0 9 0.00031 24.8 2.3 39 44-92 18-56 (84)
29 2nn6_G Exosome complex exonucl 49.0 22 0.00074 29.0 4.7 58 50-108 39-120 (289)
30 2jku_A Propionyl-COA carboxyla 48.6 4.1 0.00014 27.1 0.2 37 44-90 38-74 (94)
31 1gjx_A Pyruvate dehydrogenase; 44.0 3 0.0001 26.4 -1.0 38 43-90 19-56 (81)
32 3lu0_D DNA-directed RNA polyme 43.8 13 0.00043 37.0 2.8 63 46-109 1108-1182(1407)
33 2dnc_A Pyruvate dehydrogenase 42.1 13 0.00046 24.9 2.0 41 40-90 22-62 (98)
34 3tuf_B Stage II sporulation pr 35.7 58 0.002 25.8 5.1 43 63-105 76-120 (245)
35 2dne_A Dihydrolipoyllysine-res 35.4 18 0.00061 24.8 1.8 41 40-90 22-62 (108)
36 1pmr_A Dihydrolipoyl succinylt 33.4 4.8 0.00017 25.6 -1.3 38 43-90 20-57 (80)
37 1k8m_A E2 component of branche 33.3 14 0.00047 24.5 0.9 42 39-90 18-59 (93)
38 3nyy_A Putative glycyl-glycine 30.5 49 0.0017 26.1 3.9 41 65-105 122-166 (252)
39 4hu2_A Probable conserved lipo 27.9 54 0.0019 25.5 3.7 55 54-110 49-110 (198)
40 1y8o_B Dihydrolipoyllysine-res 27.5 33 0.0011 24.6 2.2 41 40-90 42-82 (128)
41 3lu0_D DNA-directed RNA polyme 24.2 47 0.0016 33.1 3.2 35 47-93 1005-1039(1407)
42 1o5u_A Novel thermotoga mariti 23.4 1.3E+02 0.0046 19.8 4.6 36 52-87 54-94 (101)
43 2k32_A A; NMR {Campylobacter j 23.2 34 0.0012 22.7 1.5 19 45-63 15-33 (116)
44 2qj8_A MLR6093 protein; struct 22.6 70 0.0024 25.4 3.4 40 49-94 274-313 (332)
45 3myx_A Uncharacterized protein 21.7 1.3E+02 0.0045 23.6 4.9 40 52-91 70-111 (238)
46 3mdp_A Cyclic nucleotide-bindi 20.8 1.6E+02 0.0055 18.5 4.4 32 51-94 32-63 (142)
47 1qwy_A Peptidoglycan hydrolase 20.7 1.2E+02 0.0042 24.9 4.6 44 63-106 180-224 (291)
No 1
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=100.00 E-value=5.2e-49 Score=282.74 Aligned_cols=88 Identities=57% Similarity=0.942 Sum_probs=82.1
Q ss_pred eeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEE
Q 032857 23 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 102 (132)
Q Consensus 23 ~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V 102 (132)
|||||++|||+|||||++||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|+++. ++|+||
T Consensus 1 mAhKK~~GSt~NGRdS~~krLGvK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~-~~r~~V 79 (91)
T 2zjr_T 1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFI 79 (91)
T ss_dssp -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEET-TTEEEE
T ss_pred CCcccCCCCCCCCCCCCCceeeEEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcC-CCcEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999875 799999
Q ss_pred EeeeCCCCc
Q 032857 103 HVEPKEGHV 111 (132)
Q Consensus 103 ~V~p~~~~~ 111 (132)
+|+|++.|.
T Consensus 80 ~V~p~~~~~ 88 (91)
T 2zjr_T 80 SIEAAQTEV 88 (91)
T ss_dssp EECCCC---
T ss_pred EEEeChhhh
Confidence 999976543
No 2
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=100.00 E-value=3.8e-48 Score=275.37 Aligned_cols=84 Identities=56% Similarity=0.915 Sum_probs=73.9
Q ss_pred eeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEE
Q 032857 23 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 102 (132)
Q Consensus 23 ~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V 102 (132)
|||||++|||+|||||++||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|++.. ++|+||
T Consensus 1 MAhKK~gGStkNGrdS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~-~~r~~V 79 (85)
T 3v2d_0 1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYV 79 (85)
T ss_dssp --------CCSCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEECG-GGCEEE
T ss_pred CCcccCCCCCCCCCCCCCccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEcC-CCCEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999873 689999
Q ss_pred EeeeC
Q 032857 103 HVEPK 107 (132)
Q Consensus 103 ~V~p~ 107 (132)
+|+|+
T Consensus 80 sV~p~ 84 (85)
T 3v2d_0 80 HVRPL 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99996
No 3
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=6.8e-48 Score=306.88 Aligned_cols=98 Identities=52% Similarity=0.747 Sum_probs=83.8
Q ss_pred eeeeeeeeccCCccCCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCC
Q 032857 18 LMFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLS 97 (132)
Q Consensus 18 ~~~~r~A~KK~~GStkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~ 97 (132)
.+++||||||++|||+|||||++||||||+|+||+|.+|+||||||||+||||+||||||||||||+++|+|+|++.. +
T Consensus 53 ~l~VRmAhKKggGSTkNGRDS~~KRLGVK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl~~G~VkF~~~~-~ 131 (198)
T 3bbo_X 53 PLTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFG-P 131 (198)
T ss_dssp ------CCCCSSCCCCCCCCCCCCCCSCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSSSC-C
T ss_pred hhheeeeeccCCCCCCCCCCCCCceeeEEecCCeEeccCcEEEeccCceEcCCCCeeecCCCceEeccceEEEEEEcC-C
Confidence 557999999999999999999999999999999999999999999999999999999999999999999999999653 7
Q ss_pred CceEEEeeeCCCCcccccc
Q 032857 98 GRKWVHVEPKEGHVLHPLY 116 (132)
Q Consensus 98 ~r~~V~V~p~~~~~~hp~~ 116 (132)
+|+||+|+|++.+++||.+
T Consensus 132 ~Rk~VsV~p~~~~~~~p~~ 150 (198)
T 3bbo_X 132 DRKKISVYPREIVPENPNS 150 (198)
T ss_dssp CCSCCCSSCCCCC------
T ss_pred CcEEEEEEeCCccccCchh
Confidence 8999999999999999983
No 4
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=100.00 E-value=7.9e-44 Score=248.82 Aligned_cols=76 Identities=58% Similarity=1.015 Sum_probs=73.3
Q ss_pred CCCCCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeC
Q 032857 32 TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 107 (132)
Q Consensus 32 tkNGrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~ 107 (132)
|+|||||++||||+|+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|+++..++|+||+|+|+
T Consensus 1 t~NGRDS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p~ 76 (76)
T 3r8s_W 1 TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE 76 (76)
T ss_dssp CCCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCCCcccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEeC
Confidence 6999999999999999999999999999999999999999999999999999999999999876679999999984
No 5
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=100.00 E-value=5.2e-43 Score=240.95 Aligned_cols=68 Identities=51% Similarity=0.841 Sum_probs=67.3
Q ss_pred eeccCCccCCC-CCCCCCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 24 ATKKTAGSTKN-GRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 24 A~KK~~GStkN-GrdS~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
||||++|||+| ||||++||||||+++||+|.||+||||||||+||||+||||||||||||+++|+|+|
T Consensus 1 A~KK~~GSt~N~grdS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~f 69 (69)
T 2ftc_O 1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY 69 (69)
T ss_pred CcccccCcccCCCCCCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence 89999999999 999999999999999999999999999999999999999999999999999999997
No 6
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.93 E-value=0.0036 Score=49.55 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=38.4
Q ss_pred eCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCC---ccccccccc
Q 032857 48 FGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGH---VLHPLYANA 119 (132)
Q Consensus 48 ~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~---~~hp~~~~~ 119 (132)
-+|+.|.+|+||. ||+.++|-++|+|.|.+ +++-|.|.|..++ -|.|.+..-
T Consensus 86 ~dG~~V~~GdvLA----------------Kd~AIiaEIdG~V~fgk----gkrrivI~~~~Ge~~eylIPk~k~i 140 (193)
T 2xha_A 86 RVGTKVKQGLPLS----------------KNEEYICELDGKIVEIE----RMKKVVVQTPDGEQDVYYIPLDVFD 140 (193)
T ss_dssp CTTCEECTTSBSS----------------TTSCSBCCSSEEEEEEE----EEEEEEEECTTSCEEEEEEEGGGCC
T ss_pred CCCCEEcCCCEEe----------------cCCeEEEccceEEEECC----CeEEEEEECCCCCEEEEEeCCCCcc
Confidence 4566666666666 99999999999999998 4556777786654 466666554
No 7
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=95.24 E-value=0.012 Score=49.57 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=37.8
Q ss_pred eeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCCc---ccccc
Q 032857 47 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHV---LHPLY 116 (132)
Q Consensus 47 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~~---~hp~~ 116 (132)
.-+|+.|.+|+||+ ||+.++|-+||+|.|.++ ++-|.|.|..++. |.|.+
T Consensus 125 v~~g~~v~~G~vla----------------k~~aiiaeidG~V~fg~~----kr~i~i~~~~g~~~eylip~~ 177 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS----------------KNEEYICELDGKIVEIER----MKKVVVQTPDGEQDVYYIPLD 177 (352)
T ss_dssp CCTTCEECTTCBSB----------------SSSSCBCCSCEEEEEEEE----EEEEEEECTTSCEEEEEEEGG
T ss_pred cCCCCEEccCcEEe----------------cCceEEeccceEEEECCc----EEEEEEECCCCCEEEEEEcCC
Confidence 34666677777666 999999999999999985 5557777876543 66666
No 8
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=93.46 E-value=0.14 Score=38.57 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=41.9
Q ss_pred eEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCCcccc
Q 032857 51 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHP 114 (132)
Q Consensus 51 q~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~~~hp 114 (132)
+.|.||+.|.-. ..|.||.++..- |..|+|..-|.|.+. .+.|+|.|.....+.|
T Consensus 2 ~iV~PGd~l~~~--~~~~~G~Gty~~-~~~i~as~~G~v~~~------~~~v~V~~~~~~~y~p 56 (179)
T 3m7n_A 2 RFVMPGDRIGSA--EEYVKGEGVYEE-GGELFAAVAGKLIIK------DRVAKVESISPIPEIV 56 (179)
T ss_dssp CEECTTCEEEET--TTSEECTTEEEE-TTEEEESSSEEEEEE------TTEEEEEESSCCCCCC
T ss_pred eEEcCCCCCCCC--CCEeccCCEEEe-CCEEEEEEEEEEEEe------CCEEEEEECCCCcccC
Confidence 478999999754 358999999884 889999999999982 2467888865443444
No 9
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=92.01 E-value=0.28 Score=39.12 Aligned_cols=52 Identities=21% Similarity=0.329 Sum_probs=41.5
Q ss_pred CCeEEecCcEEeecccceEeCCC--ceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCCC
Q 032857 49 GGERVIPGNIIVRQRGTRFHPGD--YVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGH 110 (132)
Q Consensus 49 ~Gq~V~~G~IIvRQRGtkfhPG~--NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~~ 110 (132)
+++.|.||+.|... .|.||. ++.. .|..|+|.+-|.|.+.. +.|+|.|....
T Consensus 15 ~~~iV~PGd~l~~~---~~~~G~~~Gty~-~~g~i~as~~G~v~~~~------~~v~V~p~~~~ 68 (251)
T 2je6_I 15 PRSIVVPGELLAEG---EFQIPWSPYILK-INSKYYSTVVGLFDVKD------TQFEVIPLEGS 68 (251)
T ss_dssp SSCEECTTCEEEEE---CCCCCCCTTEEE-ETTEEEECSSEEEEEET------TEEEEEESCCS
T ss_pred CCcEEcCCCCCccC---CeeeCCCCCEEE-ECCEEEEEEEEEEEEeC------CEEEEEECCCc
Confidence 57899999999853 489999 9887 57789999999998652 25888887653
No 10
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=88.89 E-value=0.085 Score=41.04 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=40.2
Q ss_pred eeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCC
Q 032857 47 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 109 (132)
Q Consensus 47 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~ 109 (132)
..+++.|.||+.|... ..|.||.|+.. .|..|||.+-|.|.+... ....+.|+|.|...
T Consensus 16 ~~~~~iV~PGd~l~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~~~-~~~~~vi~V~p~~~ 74 (209)
T 2nn6_I 16 APPVRYCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSE-NGALPVVSVVRETE 74 (209)
T ss_dssp ----CCCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBC-TTSSBC-CBCCSCC
T ss_pred cCCCcEEcCCCCCCCC--CCeeecCCEEE-ECCEEEEEEEEEEEEecc-CCcccEEEEecCCC
Confidence 3457889999999854 35899999986 467899999999886532 12345677777643
No 11
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=86.40 E-value=0.69 Score=36.26 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=37.0
Q ss_pred eEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCC
Q 032857 51 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 108 (132)
Q Consensus 51 q~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~ 108 (132)
+.|.||+.|.. ..|.||.|+.. .|..|+|.+-|.|.+.. + .|+|.|..
T Consensus 3 ~iV~PGd~l~~---~~~~~G~Gty~-~~g~i~as~~G~v~~~~-----~-~v~V~p~~ 50 (229)
T 2ba0_A 3 KIVLPGDLLST---NPRAAGYGTYV-EGGKVYAKIIGLFDQTE-----T-HVRVIPLK 50 (229)
T ss_dssp CEECTTCEEES---CTTSBCTTEEE-ETTEEEECSSEEEEECS-----S-CEEEEECS
T ss_pred CEEcCCCCccc---CCeEecCCEEE-eCCEEEEEEEEEEEEeC-----C-EEEEEeCC
Confidence 57999999983 34889999987 67889999999988542 1 37777654
No 12
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=79.39 E-value=1.2 Score=27.43 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.7
Q ss_pred eeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 45 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 45 iK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
+..-.|+.|.+|++|++---.+. ..+|.|+.+|+|.-
T Consensus 19 ~~v~~G~~V~~G~~l~~i~~~~~----------~~~i~ap~~G~v~~ 55 (74)
T 2d5d_A 19 VLVRVGDRVRVGQGLLVLEAMKM----------ENEIPSPRDGVVKR 55 (74)
T ss_dssp ECCCTTCEECTTCEEEEEEETTE----------EEEEECSSSEEEEE
T ss_pred EEcCCCCEeCCCCEEEEEecccc----------eEEEeCCCCEEEEE
Confidence 45568999999999998654433 46899999999853
No 13
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=79.19 E-value=2.5 Score=34.92 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=37.4
Q ss_pred CCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCC
Q 032857 49 GGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 108 (132)
Q Consensus 49 ~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~ 108 (132)
+++.|.||+.|... -.|.||.|+.. .|..|+|.+-|.|... .+.|+|.|..
T Consensus 38 ~~~iVlPGd~L~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~------~~~vsV~p~~ 88 (308)
T 2nn6_H 38 KKHLVVPGDTITTD--TGFMRGHGTYM-GEEKLIASVAGSVERV------NKLICVKALK 88 (308)
T ss_dssp --CBCCTTCBCCCC--TTCCBCTTEEE-CSSSEEECSSEEEEEE------TTEEEEEESS
T ss_pred CCcEEeCCCCCCCC--CCEeecCCeEE-ECCEEEEEEEEEEEec------CCEEEEeeCC
Confidence 45679999999753 35899999876 4667999999998853 1357777754
No 14
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=78.74 E-value=1.2 Score=27.79 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=29.0
Q ss_pred eeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 45 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 45 iK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
+..-.|+.|.+|++|++-.-.++ ..+|.|+.+|+|.-
T Consensus 22 ~~v~~G~~V~~G~~L~~l~~~~~----------~~~i~Ap~~G~v~~ 58 (77)
T 1dcz_A 22 ILVKEGDTVKAGQTVLVLEAMKM----------ETEINAPTDGKVEK 58 (77)
T ss_dssp ECCCTTCEECTTSEEEEEEETTE----------EEEEECSSSEEEEE
T ss_pred EEcCCcCEEcCCCEEEEEEccce----------eEEEECCCCEEEEE
Confidence 44568999999999998654443 46899999999874
No 15
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=75.87 E-value=0.7 Score=36.17 Aligned_cols=51 Identities=16% Similarity=0.026 Sum_probs=0.0
Q ss_pred CeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCC
Q 032857 50 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 108 (132)
Q Consensus 50 Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~ 108 (132)
++.|.||+.|.. -.|.||.|+.. .|..|+|.+-|.|.+.. ++..|+|.|..
T Consensus 9 ~~iV~PGd~l~~---~~~~~G~Gty~-~~~~I~Asv~G~v~~~~----~~~~vsV~p~~ 59 (235)
T 2z0s_A 9 GRIVVPGEPLPE---EVEASPPYVID-YKGVKRATVVGLLREKG----DGGGRAFVKLK 59 (235)
T ss_dssp -----------------------------------------------------------
T ss_pred CcEEeCCCCccc---CceEcCCCEEE-ECCEEEEEEeEEEEEeC----CccEEEEEeCC
Confidence 578999999974 34899999876 57789999999988653 23457777654
No 16
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=73.31 E-value=1.7 Score=26.64 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=27.5
Q ss_pred eeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 45 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 45 iK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
+..-.|+.|.+|++|++=.-.+ ...+|.|+.+|+|.
T Consensus 13 ~~v~~G~~V~~G~~l~~i~~~~----------~~~~i~ap~~G~v~ 48 (72)
T 1z6h_A 13 VHVKAGDQIEKGQEVAILESMK----------MEIPIVADRSGIVK 48 (72)
T ss_dssp ECCCTTCEECTTCEEEEEEETT----------EEEEEECSSCEEEE
T ss_pred EEcCCcCEECCCCEEEEEECCc----------cEEEEECCCCcEEE
Confidence 4556899999999999743221 35789999999985
No 17
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=72.53 E-value=2.9 Score=26.35 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=31.7
Q ss_pred CccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 40 PKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 40 ~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
++=.=|..-.|+.|.+|++|++---.+ -..+|.|+.+|+|.-
T Consensus 15 G~v~~~~v~~G~~V~~G~~l~~ie~~~----------~~~~i~Ap~~G~v~~ 56 (80)
T 1qjo_A 15 VEVTEVMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVKE 56 (80)
T ss_dssp EEEEECCCCTTCEECBTSEEEEEESSS----------SCEEEEBSSCEEEEE
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEcCC----------ceEEEeCCCCEEEEE
Confidence 333345566899999999999865433 367899999999863
No 18
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=70.59 E-value=1.8 Score=27.50 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=30.4
Q ss_pred ceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 43 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 43 LGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
.-|.+-.|+.|.+|++|+.---.+. ..+|.|+.+|+|.-
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~k~----------~~~i~Ap~~G~v~~ 54 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESAKA----------SMEVPSPKAGVVKS 54 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECSSC----------EEEEECSSSSEEEE
T ss_pred EEEecCCCCEEcCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 3456678999999999998665443 46899999999863
No 19
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=68.90 E-value=3 Score=27.92 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=29.0
Q ss_pred eeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 45 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 45 iK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
+.+-.|+.|.+|++|++---.++ ..+|.|+.+|+|.-
T Consensus 28 ~~v~~Gd~V~~Gq~L~~ie~~~~----------~~~i~AP~~G~V~~ 64 (99)
T 2ejm_A 28 VFVKAGDKVKAGDSLMVMIAMKM----------EHTIKSPKDGTVKK 64 (99)
T ss_dssp ECCCTTEEECSSCEEEEEESSSS----------EEEEECSSCEEEEE
T ss_pred EECCCCCEECCCCEEEEEEccce----------eEEEECCCCeEEEE
Confidence 55668999999999998544332 36899999999874
No 20
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=68.29 E-value=2.9 Score=26.44 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=30.1
Q ss_pred ceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 43 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 43 LGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
.=|.+-.|+.|.+|++|++---.+. .+.|.|+.+|+|.-
T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (79)
T 1ghj_A 19 ATWHKKPGEAVKRDELIVDIETDKV----------VMEVLAEADGVIAE 57 (79)
T ss_dssp CCCSSCTTSEECSSCEEEEEECSSC----------EEEEECSSCEEEEE
T ss_pred EEEEcCCCCEECCCCEEEEEEccce----------eEEEEcCCCEEEEE
Confidence 3355668999999999998654443 47899999999863
No 21
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=68.13 E-value=2.7 Score=26.61 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=28.7
Q ss_pred eeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 45 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 45 iK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
|..-.|+.|.+|++|++---.+. ...|.|+.+|+|.-
T Consensus 25 ~~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 61 (80)
T 1bdo_A 25 AFIEVGQKVNVGDTLCIVEAMKM----------MNQIEADKSGTVKA 61 (80)
T ss_dssp CSCCTTCEECTTCEEEEEEETTE----------EEEEECSSCEEEEE
T ss_pred cccCCcCEECCCCEEEEEEeccE----------EEEEECCCCEEEEE
Confidence 34568999999999998554332 46799999999874
No 22
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=66.08 E-value=3.6 Score=31.47 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=24.4
Q ss_pred eeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEE
Q 032857 46 KKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEK 93 (132)
Q Consensus 46 K~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~ 93 (132)
..-+||.|.+|++|+ .|-| -.+-|.+-..|+|+|..
T Consensus 65 ~V~dG~~V~~G~~la-----ewDp-------~t~pIisE~~G~V~f~d 100 (190)
T 2auk_A 65 AKGDGEQVAGGETVA-----NWDP-------HTMPVITEVSGFVRFTD 100 (190)
T ss_dssp SSCTTCEECTTCEEE-----ECCS-------SEEEEECSSCEEEEEES
T ss_pred EecCCCEEcCCCEEE-----EEcC-------cCCcEEeccccEEEEEe
Confidence 344667777777666 3433 12459999999999965
No 23
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=61.73 E-value=4.8 Score=27.63 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=22.5
Q ss_pred cCCccEEEeeCeEEEEEEecCCCceEEEeeeCCC
Q 032857 76 GKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 109 (132)
Q Consensus 76 GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~ 109 (132)
-|+..+.|-++|+|.|.++. ++.+.|.|.|.++
T Consensus 21 PK~~AiIaEi~G~V~i~~~~-k~~r~i~I~~~dG 53 (84)
T 2lmc_B 21 MKEPAILAEISGIVSFGKET-KGKRRLVITPVDG 53 (84)
T ss_dssp ---CCBSBSSSEEEEEECCS-SSCCEEEEEESSS
T ss_pred CCCCEEeecCccEEEEeEec-CCcEEEEEEECCC
Confidence 46678899999999998742 3555567777654
No 24
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=61.32 E-value=1.8 Score=27.28 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=29.1
Q ss_pred eeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 44 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 44 GiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
-|..-.|+.|.+|++|++---.+. ..+|.|+.+|+|.-
T Consensus 20 ~~~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (77)
T 2l5t_A 20 RWDVKEGDMVEKDQDLVEVMTDKV----------TVKIPSPVRGKIVK 57 (77)
T ss_dssp ECSCCTTCEECSCCCCCEEESSSC----------EEECCCCCCEEEEE
T ss_pred EEEeCCCCEECCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 355668999999999998654433 36899999999863
No 25
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.94 E-value=5.4 Score=26.64 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=29.1
Q ss_pred eeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 45 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 45 iK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
|.+-.|+.|.+|++|++---.+. ..+|.|+.+|+|.
T Consensus 31 ~~v~~Gd~V~~Gq~L~~le~~k~----------~~~i~Ap~~G~V~ 66 (100)
T 2dn8_A 31 YTVEDGGHVEAGSSYAEMEVMKM----------IMTLNVQERGRVK 66 (100)
T ss_dssp ESSCTTEEECTTCEEEEEEETTE----------EEEEECSSSEEEE
T ss_pred EEcCCcCEECCCCEEEEEEecce----------EEEEEcCCCEEEE
Confidence 55668999999999998654332 4789999999998
No 26
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=53.22 E-value=1.6 Score=28.31 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=29.2
Q ss_pred eeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 45 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 45 iK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
|.+-.|+.|.+|++|++---.+ ...+|.|+.+|+|.
T Consensus 16 ~~v~~Gd~V~~G~~L~~ie~~k----------~~~~i~Ap~~G~V~ 51 (85)
T 2k7v_A 16 VMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVK 51 (85)
T ss_dssp CCCSSSCCCCCSSSCCCCSCCC----------SEEEEECSSCBCCC
T ss_pred EEcCCCCEEcCCCEEEEEEccc----------cEEEEECCCCEEEE
Confidence 5566899999999999865443 35789999999985
No 27
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=52.93 E-value=8 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=31.2
Q ss_pred CccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 40 PKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 40 ~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
++=.=|.+-.|+.|.+|++|+.---.|. .+.|.|..+|+|.
T Consensus 20 G~v~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 60 (87)
T 3crk_C 20 GTVQRWEKKVGEKLSEGDLLAEIETDXA----------TIGFEVQEEGYLA 60 (87)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEE
T ss_pred EEEEEEEcCCCCEEcCCCEEEEEECCcc----------cceeecCcCcEEE
Confidence 3334466778999999999998655442 4789999999986
No 28
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=51.98 E-value=9 Score=24.76 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=29.7
Q ss_pred eeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEE
Q 032857 44 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE 92 (132)
Q Consensus 44 GiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~ 92 (132)
-|.+-.|+.|.+|+.|+.---.|. ...|.|+.+|+|..-
T Consensus 18 ~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~~ 56 (84)
T 2kcc_A 18 QYTVEDGGHVEAGSSYAEMEVMKM----------IMTLNVQERGRVKYI 56 (84)
T ss_dssp EESSCTTEEECTTCEEEEEECSSC----------EEEEECSSSEEEEEC
T ss_pred EEECCCCCEECCCCEEEEEEecce----------eEEEECCCCEEEEEE
Confidence 355668999999999998654332 478999999999743
No 29
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=49.01 E-value=22 Score=29.05 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=30.4
Q ss_pred CeEEecCcEEeecc-----c----------------ceEeC--CCceeecCCccEEEeeCeEEEEEEec-CCCceEEEee
Q 032857 50 GERVIPGNIIVRQR-----G----------------TRFHP--GDYVGMGKDHTLYALKEGRVKFEKHK-LSGRKWVHVE 105 (132)
Q Consensus 50 Gq~V~~G~IIvRQR-----G----------------tkfhP--G~NVg~GrDhTLfAl~~G~V~f~~~~-~~~r~~V~V~ 105 (132)
++.|.||+.|...- + -.|.+ |.++.. .+..|||..-|.|++.... .+.-..+.|.
T Consensus 39 ~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~-~~~~I~as~aG~l~~~~~~~~~~~~~v~V~ 117 (289)
T 2nn6_G 39 GQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRR-CGDRLLVTKCGRLRHKEPGSGSGGGVYWVD 117 (289)
T ss_dssp SSBCCSSEEECCSCSCCEECSSEEECC------------------------CCCEEECSCCEEEEECCTTTSSCCEEEEE
T ss_pred CcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEE-ECCEEEEEEeEeEEeccCCccCccceEEEE
Confidence 67799999997542 1 16778 888765 3678999999999876431 0011346666
Q ss_pred eCC
Q 032857 106 PKE 108 (132)
Q Consensus 106 p~~ 108 (132)
|..
T Consensus 118 ~~~ 120 (289)
T 2nn6_G 118 SQQ 120 (289)
T ss_dssp CCC
T ss_pred ecC
Confidence 654
No 30
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=48.58 E-value=4.1 Score=27.06 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=16.8
Q ss_pred eeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 44 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 44 GiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
-+..-.|+.|.+|++|++---.+. ..+|.|+.+|+|.
T Consensus 38 ~~~v~~Gd~V~~Gq~L~~ie~~k~----------~~~i~AP~~G~V~ 74 (94)
T 2jku_A 38 AVSVKPGDAVAEGQEICVIEAMKM----------QNSMTAGKTGTVK 74 (94)
T ss_dssp EECCCTTCCCCTTCCCEEEEC--------------------------
T ss_pred EEECCCCCEEcCCCEEEEEecccc----------cEEEECCCCEEEE
Confidence 455668999999999998554332 3679999999986
No 31
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=43.95 E-value=3 Score=26.45 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=28.2
Q ss_pred ceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 43 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 43 LGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
.=|.+-.|+.|.+|++|+.---.+. ..+|.|+.+|+|.
T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 56 (81)
T 1gjx_A 19 IAVEVNVGDTIAVDDTLITLETDKA----------TMDVPAEVAGVVK 56 (81)
T ss_dssp EEECCCSSCBCCSSCCCEEEECSSC----------EEEECCCCSSBBC
T ss_pred EEEEcCCCCEECCCCEEEEEEeCCc----------EEEEECCCCEEEE
Confidence 3355668999999999997654432 4778899999875
No 32
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=43.80 E-value=13 Score=37.01 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=40.9
Q ss_pred eeeCCeEEecCcEEeec-c-cceE---eCCC-------ceeecCCccEEEeeCeEEEEEEecCCCceEEEeeeCCC
Q 032857 46 KKFGGERVIPGNIIVRQ-R-GTRF---HPGD-------YVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 109 (132)
Q Consensus 46 K~~~Gq~V~~G~IIvRQ-R-Gtkf---hPG~-------NVg~GrDhTLfAl~~G~V~f~~~~~~~r~~V~V~p~~~ 109 (132)
-+.+|+.|.+|+||+|= | ..+- -=|. -..-=||..+.|-++|+|.|.++. ++++.|.|.|.++
T Consensus 1108 ~v~~g~~v~~g~vlakip~~~~k~~DIt~GLprv~eLfEar~pk~~a~i~ei~G~v~~~~~~-~~~~~~~i~~~~g 1182 (1407)
T 3lu0_D 1108 QLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKET-KGKRRLVITPVDG 1182 (1407)
T ss_dssp CCCSSCEECTTCEEECCCCCCCCSSCCCCSHHHHHHHHTTCCCSSCCCCCSSCSCCEECCCC-SSCEEEECCCSSC
T ss_pred EecCCCEeccCceEEecchhhccccchhcCcHHHHHHHhccCCCCceEEeccceEEEEeecc-CCceEEEEEeCCC
Confidence 34689999999999972 1 1111 0000 011236788999999999997764 4556677887765
No 33
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.14 E-value=13 Score=24.93 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=31.3
Q ss_pred CccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 40 PKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 40 ~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
++=.=|.+-.|+.|.+|++|+.---.|. .+.|-|..+|+|.
T Consensus 22 G~i~~~~v~~Gd~V~~G~~L~~ie~~K~----------~~~i~Ap~~G~v~ 62 (98)
T 2dnc_A 22 GNIVKWLKKEGEAVSAGDALCEIETDKA----------VVTLDASDDGILA 62 (98)
T ss_dssp ECEEEESSCTTCEECTTSEEEEEECSSC----------EEEEECSSCEEEE
T ss_pred EEEEEEEcCCCCEeCCCCEEEEEEcccc----------eeEEeCCCCEEEE
Confidence 3334466778999999999998655442 4789999999986
No 34
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=35.68 E-value=58 Score=25.79 Aligned_cols=43 Identities=16% Similarity=0.014 Sum_probs=29.4
Q ss_pred ccceEeCCCceeecCCc--cEEEeeCeEEEEEEecCCCceEEEee
Q 032857 63 RGTRFHPGDYVGMGKDH--TLYALKEGRVKFEKHKLSGRKWVHVE 105 (132)
Q Consensus 63 RGtkfhPG~NVg~GrDh--TLfAl~~G~V~f~~~~~~~r~~V~V~ 105 (132)
...++|.|..+.....- .++|..+|+|.|.......-.+|-|.
T Consensus 76 ~~~~~H~GIDi~a~~Gt~~pV~A~~~G~V~~~g~~~~~G~~ViI~ 120 (245)
T 3tuf_B 76 NTYSLSKGIDLAEKDGKDFDVSASLSGTVVKAEKDPVLGYVVEVE 120 (245)
T ss_dssp SEEEECCSEEEEETTCCCCEEECSSCEEEEEEEEETTTEEEEEEE
T ss_pred CCccccccEEEeCCCCCcceEEeCcCeEEEEEEecCCCceEEEEE
Confidence 34577888777765444 69999999999986533334455553
No 35
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=35.36 E-value=18 Score=24.82 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=31.2
Q ss_pred CccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 40 PKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 40 ~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
++=.-|.+-.|+.|.+|++|+.---.|. .+.|.|..+|+|.
T Consensus 22 G~v~~~~v~~Gd~V~~G~~L~~iE~~K~----------~~~i~Ap~~G~V~ 62 (108)
T 2dne_A 22 GTIARWEKKEGDKINEGDLIAEVETDKA----------TVGFESLEECYMA 62 (108)
T ss_dssp EEEEECSSCTTCEECTTSEEEEEECSSC----------EEEEECSSSEEEE
T ss_pred EEEEEEEcCCCCEecCCCEEEEEEcCcc----------eeEEeCCCCEEEE
Confidence 3334466678999999999998655442 4789999999987
No 36
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=33.35 E-value=4.8 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=28.4
Q ss_pred ceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 43 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 43 LGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
.-|.+-.|+.|.+|+.|+.---.|. .+.|.|+.+|+|.
T Consensus 20 ~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 57 (80)
T 1pmr_A 20 ATWHKKPGDAVVRDEVLVEIETDKV----------VLEVPASADGILD 57 (80)
T ss_dssp CBCCCCTTCCBSSSCCBCBCCSSSC----------CCCCBCCSBCCCC
T ss_pred EEEECCCcCEECCCCEEEEEEccce----------EEEEECCCCEEEE
Confidence 3456678999999999998654442 4778888888775
No 37
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=33.33 E-value=14 Score=24.53 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=31.0
Q ss_pred CCccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 39 KPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 39 ~~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
.++=.-|.+-.|+.|.+|+.|+.---.|. ...|.|..+|+|.
T Consensus 18 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~----------~~~i~Ap~~G~V~ 59 (93)
T 1k8m_A 18 EVTVKEWYVKEGDTVSQFDSICEVQSDKA----------SVTITSRYDGVIK 59 (93)
T ss_dssp CEEEEEECCCTTCEECSSSCCEEEECSSC----------EEECCCSSCEEEE
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEcCCc----------EEEEEcCCCEEEE
Confidence 33444566778999999999998554442 3678899999986
No 38
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=30.54 E-value=49 Score=26.15 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=27.6
Q ss_pred ceEeCCCceeecCCc----cEEEeeCeEEEEEEecCCCceEEEee
Q 032857 65 TRFHPGDYVGMGKDH----TLYALKEGRVKFEKHKLSGRKWVHVE 105 (132)
Q Consensus 65 tkfhPG~NVg~GrDh----TLfAl~~G~V~f~~~~~~~r~~V~V~ 105 (132)
.++|.|.-+.....- .++|..+|+|.+.......-.+|-|.
T Consensus 122 ~~~H~GiDi~a~~Gt~~~~pV~A~~~G~V~~~g~~~~~G~~V~I~ 166 (252)
T 3nyy_A 122 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGIT 166 (252)
T ss_dssp CTTCCCEEEEESSCCTTCSEEECSSCEEEEEEEEETTTEEEEEEE
T ss_pred CccCccEEEecCCCCCCCceEEeccCEEEEEEEecCCCCCEEEEE
Confidence 357777666655554 79999999999876533344455554
No 39
>4hu2_A Probable conserved lipoprotein LPPS; cell-WALL, transpeptidase, immunoglobuline-fold, peptidoglyc unknown function; 1.46A {Mycobacterium tuberculosis}
Probab=27.92 E-value=54 Score=25.49 Aligned_cols=55 Identities=22% Similarity=0.390 Sum_probs=39.7
Q ss_pred ecCcEEeecccceEeCCCceeecCCccEEEee---CeE----EEEEEecCCCceEEEeeeCCCC
Q 032857 54 IPGNIIVRQRGTRFHPGDYVGMGKDHTLYALK---EGR----VKFEKHKLSGRKWVHVEPKEGH 110 (132)
Q Consensus 54 ~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~---~G~----V~f~~~~~~~r~~V~V~p~~~~ 110 (132)
.+|.| ..-|+.|.|-+..+.|+.||+-|.. +|. ..|+.-...+....++.|.+++
T Consensus 49 V~G~l--s~Dg~~W~~~~~L~~g~~Ytv~a~a~~~~G~~~~~~tFtT~~p~~~~~~~~~P~~g~ 110 (198)
T 4hu2_A 49 VAGRL--SPDGLRWSTTEQLGYNRRYTLNATALGLGGAATRQLTFQTSSPAHLTMPYVMPGDGE 110 (198)
T ss_dssp CCEEE--CTTSSEEEECSCCCTTCEEEEEEEEEETTEEEEEEEEEEBCCCSEEECEEEESCTTC
T ss_pred EeeEE--CCCCCEEeeCCcCCCCCEEEEEEEEECCCCceeeeeEEEEeCCcccceeEEECCCCC
Confidence 34443 4558999999999999999998886 565 4566544344556778887765
No 40
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=27.50 E-value=33 Score=24.56 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=31.4
Q ss_pred CccceeeeeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEE
Q 032857 40 PKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 90 (132)
Q Consensus 40 ~KrLGiK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~ 90 (132)
++=.-|.+-.|+.|.+|++|+.---.|. .+.|.|..+|+|.
T Consensus 42 G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~----------~~~I~Ap~~G~V~ 82 (128)
T 1y8o_B 42 GTVQRWEKKVGEKLSEGDLLAEIETDKA----------TIGFEVQEEGYLA 82 (128)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEE
T ss_pred EEEEEEecCCCCEecCCCEEEEEEcCcc----------eeEEeCCCCeEEE
Confidence 3344567778999999999997665542 4789999999986
No 41
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=24.22 E-value=47 Score=33.06 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=24.9
Q ss_pred eeCCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEE
Q 032857 47 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEK 93 (132)
Q Consensus 47 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~ 93 (132)
+-+||+|.+|++|+- |-| -.+-|.|-++|+|+|..
T Consensus 1005 v~~g~~V~~g~~ia~-----wDp-------~~~piise~~G~v~f~d 1039 (1407)
T 3lu0_D 1005 KGDGEQVAGGETVAN-----WDP-------HTMPVITEVSGFVRFTD 1039 (1407)
T ss_dssp SCSSCEECTTCEEEE-----CCS-------SCCCEECSSCEEEEEES
T ss_pred EcCCCEecCCCEEEE-----Eec-------CceeEEeccceEEEEee
Confidence 346677777766653 555 24669999999999953
No 42
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=23.36 E-value=1.3e+02 Score=19.81 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=25.4
Q ss_pred EEecCcEEeecc-c--ceEeCCCceeecCC--ccEEEeeCe
Q 032857 52 RVIPGNIIVRQR-G--TRFHPGDYVGMGKD--HTLYALKEG 87 (132)
Q Consensus 52 ~V~~G~IIvRQR-G--tkfhPG~NVg~GrD--hTLfAl~~G 87 (132)
+|..|.+.+.-- | ..+.||+-+-+..+ |++.+..+.
T Consensus 54 ~Vl~G~~~~~i~~g~~~~l~~GD~i~ip~g~~H~~~n~~~~ 94 (101)
T 1o5u_A 54 YILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPV 94 (101)
T ss_dssp EEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEEEEE
T ss_pred EEEeCEEEEEECCCCEEEECCCCEEEECCCCcEEEEeCCCe
Confidence 677888777755 4 57888888888776 666655443
No 43
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=23.19 E-value=34 Score=22.74 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.4
Q ss_pred eeeeCCeEEecCcEEeecc
Q 032857 45 VKKFGGERVIPGNIIVRQR 63 (132)
Q Consensus 45 iK~~~Gq~V~~G~IIvRQR 63 (132)
+..-.|+.|.+|++|++-.
T Consensus 15 v~v~~G~~V~~Gq~L~~ld 33 (116)
T 2k32_A 15 KLFKAGDKVKKGQTLFIIE 33 (116)
T ss_dssp ECSCTTSEECTTCEEEEEE
T ss_pred EECCCcCEECCCCEEEEEC
Confidence 4456899999999999843
No 44
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=22.55 E-value=70 Score=25.38 Aligned_cols=40 Identities=10% Similarity=-0.058 Sum_probs=29.1
Q ss_pred CCeEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEe
Q 032857 49 GGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKH 94 (132)
Q Consensus 49 ~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~ 94 (132)
-|+.|.+|++|.+..-. +.+|+. -..|.|..+|.|-+-..
T Consensus 274 ~g~~V~~G~~la~i~dp-~~~G~~-----~~~v~Ap~dGiv~~~~~ 313 (332)
T 2qj8_A 274 VMDEVEQGDVVGVLHPM-GSLSAA-----SIDIRAQSKSTVFAIRS 313 (332)
T ss_dssp TTCEECTTCEEEEEECT-TCSSSC-----CEEEECSSSEEEEEEEC
T ss_pred CCCEeCCCCEEEEEECC-CCCCCe-----eEEEEeCCCeEEEEEeC
Confidence 58999999999887543 224432 25699999999977663
No 45
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=21.73 E-value=1.3e+02 Score=23.65 Aligned_cols=40 Identities=8% Similarity=0.165 Sum_probs=30.9
Q ss_pred EEecCcEEeeccc--ceEeCCCceeecCCccEEEeeCeEEEE
Q 032857 52 RVIPGNIIVRQRG--TRFHPGDYVGMGKDHTLYALKEGRVKF 91 (132)
Q Consensus 52 ~V~~G~IIvRQRG--tkfhPG~NVg~GrDhTLfAl~~G~V~f 91 (132)
+|..|.+.+...| ..+.||+-+.|.+...+---++..|++
T Consensus 70 ~VleG~~~lt~~g~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~ 111 (238)
T 3myx_A 70 VMHRGSVTLTSGTDSVTLSTGESAVIGRGTQVRIDAQPESLW 111 (238)
T ss_dssp EEEESEEEEEETTEEEEEETTCEEEECTTCCEEEEECTTEEE
T ss_pred EEEEeEEEEECCCeEEEEcCCCEEEECCCCEEEEEecCCeEE
Confidence 5778999997644 689999999999997766666665544
No 46
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=20.82 E-value=1.6e+02 Score=18.50 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=22.6
Q ss_pred eEEecCcEEeecccceEeCCCceeecCCccEEEeeCeEEEEEEe
Q 032857 51 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKH 94 (132)
Q Consensus 51 q~V~~G~IIvRQRGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~ 94 (132)
..+.+|++|++| |+. ...+|=+.+|.|+....
T Consensus 32 ~~~~~g~~i~~~-------g~~-----~~~~y~i~~G~v~~~~~ 63 (142)
T 3mdp_A 32 KSFPTGSVIFKE-------NSK-----ADNLMLLLEGGVELFYS 63 (142)
T ss_dssp EEECTTCEEECT-------TSB-----CCEEEEEEESCEEEECC
T ss_pred EecCCCCEEEeC-------CCC-----CCcEEEEEeCEEEEEEE
Confidence 345677777665 322 25799999999999864
No 47
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=20.71 E-value=1.2e+02 Score=24.85 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=32.5
Q ss_pred ccceEeCCCceeecCCccEEEeeCeEEEEEEecC-CCceEEEeee
Q 032857 63 RGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKL-SGRKWVHVEP 106 (132)
Q Consensus 63 RGtkfhPG~NVg~GrDhTLfAl~~G~V~f~~~~~-~~r~~V~V~p 106 (132)
++..+|.|.-+.....-.++|..+|+|.+..... ..-.+|-|.-
T Consensus 180 ~~~~~H~GIDiaa~~GtpV~A~adG~Vv~ag~~~~g~Gn~ViI~H 224 (291)
T 1qwy_A 180 HGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKE 224 (291)
T ss_dssp TTSSEECSEEEECCTTCEEECSSSEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCccceECCCCCCCeEEeCcCeEEEEEEEecCCCCeEEEEEE
Confidence 3568899988887777889999999999987532 1345666653
Done!