RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 032857
         (132 letters)



>gnl|CDD|235464 PRK05435, rpmA, 50S ribosomal protein L27; Validated.
          Length = 82

 Score =  147 bits (373), Expect = 2e-47
 Identities = 54/82 (65%), Positives = 63/82 (76%), Gaps = 1/82 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GST+NGRDS+ K LGVK+FGG+ V  GNIIVRQRGT+FHPG  VG GKDHTL+A
Sbjct: 2   AHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFA 61

Query: 84  LKEGRVKFEKHKLSGRKWVHVE 105
           L +G VKFE+ K   RK+V V 
Sbjct: 62  LVDGVVKFER-KGRNRKYVSVV 82


>gnl|CDD|201553 pfam01016, Ribosomal_L27, Ribosomal L27 protein. 
          Length = 80

 Score =  143 bits (363), Expect = 4e-46
 Identities = 58/81 (71%), Positives = 64/81 (79%), Gaps = 1/81 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GSTKNGRDS  K LGVKKFGG+ V  GNIIVRQRGT+FHPG+ VGMGKDHTL+A
Sbjct: 1   AHKKGGGSTKNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFA 60

Query: 84  LKEGRVKFEKHKLSGRKWVHV 104
           L +G VKFEK K   RK+V V
Sbjct: 61  LVDGYVKFEK-KPKNRKYVSV 80


>gnl|CDD|223289 COG0211, RpmA, Ribosomal protein L27 [Translation, ribosomal
           structure and biogenesis].
          Length = 87

 Score =  135 bits (341), Expect = 1e-42
 Identities = 55/85 (64%), Positives = 64/85 (75%), Gaps = 1/85 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GST+NGRDS+ K LGVKKFGG+ V  G+IIVRQRGT+FHPG  VG GKDHTL+A
Sbjct: 2   AHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLFA 61

Query: 84  LKEGRVKFEKHKLSGRKWVHVEPKE 108
           L +G VKFE  K   RK+V V P+ 
Sbjct: 62  LVDGVVKFET-KGKNRKYVSVVPEA 85


>gnl|CDD|214370 CHL00121, rpl27, ribosomal protein L27; Reviewed.
          Length = 86

 Score =  123 bits (312), Expect = 3e-38
 Identities = 49/77 (63%), Positives = 57/77 (74%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK AGSTKNGRDS  K LGVK+FGGE+V  GNI++RQRGT+F PG  VG GKD TLYA
Sbjct: 2   AHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYA 61

Query: 84  LKEGRVKFEKHKLSGRK 100
           L +G VKF+K     + 
Sbjct: 62  LIDGFVKFKKKNKKQKS 78


>gnl|CDD|232803 TIGR00062, L27, ribosomal protein L27.  Eubacterial, chloroplast,
           and mitochondrial. Mitochondrial members have an
           additional C-terminal domain [Protein synthesis,
           Ribosomal proteins: synthesis and modification].
          Length = 83

 Score =  111 bits (279), Expect = 3e-33
 Identities = 55/82 (67%), Positives = 64/82 (78%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           ATKK  GSTKNGRDS+ K LGVK+ GG+ V  G+IIVRQRGT+FHPG+ VGMGKDHTL+A
Sbjct: 2   ATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTKFHPGNNVGMGKDHTLFA 61

Query: 84  LKEGRVKFEKHKLSGRKWVHVE 105
           L +G VKFEK     RK+V V 
Sbjct: 62  LSDGVVKFEKKGKRSRKFVSVV 83


>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
          Length = 585

 Score = 31.6 bits (72), Expect = 0.086
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 33  KNGRDSK-----PKNLGVKKFGGERVIPGNIIVRQRGTRF 67
           K+GR        PK++G++KF      PGN I++  G R 
Sbjct: 159 KHGRPGPVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRP 198


>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
          Length = 557

 Score = 27.8 bits (62), Expect = 2.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 49  GGERVIPGNIIVRQRGTRF--HPGDYVGMGKDHTLYA 83
             ER  PG+IIV + G RF    G Y+ +G+   +YA
Sbjct: 334 NSERSKPGSIIVDRAGRRFVNEAGSYMEVGR--AMYA 368


>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
          Length = 557

 Score = 27.3 bits (61), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 51  ERVIPGNIIVRQRGTRF 67
           ER +PG+IIV   G RF
Sbjct: 333 ERNLPGSIIVNMSGKRF 349


>gnl|CDD|237226 PRK12845, PRK12845, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
          Length = 564

 Score = 27.0 bits (60), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 51  ERVIPGNIIVRQRGTRF--HPGDYVGMGK 77
           ER +PG++IV Q G RF     DY+  G+
Sbjct: 344 ERSLPGSLIVDQTGRRFVNEATDYMSFGQ 372


>gnl|CDD|215355 PLN02658, PLN02658, homogentisate 1,2-dioxygenase.
          Length = 435

 Score = 25.8 bits (57), Expect = 9.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 48  FGGERVIPGNIIVRQRGTRF 67
            G  +V PG I+V  RG RF
Sbjct: 164 LGKLQVSPGEIVVIPRGFRF 183


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0775    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,657,510
Number of extensions: 578779
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 22
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)