RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032857
         (132 letters)



>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli
           [TaxId: 562]}
          Length = 84

 Score =  125 bits (317), Expect = 1e-39
 Identities = 49/83 (59%), Positives = 62/83 (74%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A
Sbjct: 1   AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 60

Query: 84  LKEGRVKFEKHKLSGRKWVHVEP 106
             +G+VKFE      RK++ +E 
Sbjct: 61  KADGKVKFEVKGPKNRKFISIEA 83


>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 84

 Score =  124 bits (312), Expect = 7e-39
 Identities = 50/85 (58%), Positives = 62/85 (72%), Gaps = 1/85 (1%)

Query: 24  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 83
           A KK  GS+KNGRDS PK LGVKKFGGE V  GNI+VRQRGT+F  G  VGMG+DHTL+A
Sbjct: 1   AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 60

Query: 84  LKEGRVKFEKHKLSGRKWVHVEPKE 108
           L +G+V F   K  G +++ +E  +
Sbjct: 61  LSDGKVVFIN-KGKGARFISIEAAQ 84


>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus
           [TaxId: 274]}
          Length = 66

 Score =  103 bits (260), Expect = 3e-31
 Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 43  LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 102
           LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+AL +G V+F+  +    ++V
Sbjct: 2   LGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQD-RGRLGRYV 60

Query: 103 HVEP 106
           HV P
Sbjct: 61  HVRP 64


>d1nxja_ c.8.7.1 (A:) Hypothetical protein Rv3853 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 156

 Score = 26.0 bits (57), Expect = 1.1
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 19  MFRRWATKKTAGSTKNG--RDSK-PKNLGVKKF-------GGERVIPG--NIIVRQRGTR 66
           +     +    G   +G  RD+   + + +             +   G  ++ +   G  
Sbjct: 80  IAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVT 139

Query: 67  FHPGDYV 73
           F PGD  
Sbjct: 140 FVPGDIA 146


>d1j3la_ c.8.7.1 (A:) Demethylmenaquinone methyltransferase {Thermus
           thermophilus [TaxId: 274]}
          Length = 164

 Score = 26.1 bits (57), Expect = 1.2
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 1   MQAIECERTDGSAGGLSLMFRRWATKKTAGSTKNG--RDS---KPKNLG-----VKKFGG 50
           +  ++   +  +A     + RR   K  AG   +G  RD+   +   +G           
Sbjct: 59  VLFVDGGGSLRTALLGGNLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKS 118

Query: 51  ERVIPG--NIIVRQRGTRFHPGDYV 73
            +   G  ++ ++  G    PG ++
Sbjct: 119 AKEGKGEVDVPLKVLGVEVLPGSFL 143


>d1q5xa_ c.8.7.1 (A:) Regulator of RNase E activity RraA (MenG)
           {Escherichia coli [TaxId: 562]}
          Length = 160

 Score = 24.9 bits (54), Expect = 3.2
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%)

Query: 4   IECERTDGSAGGLSLMFRRWATKKTAGSTKNG--RDSK-PKNLGVKKF-------GGERV 53
           ++   +   A   + + R     +  G    G  R     + L +          G    
Sbjct: 62  VDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGE 121

Query: 54  IPG--NIIVRQRGTRFHPGDYV 73
             G  ++ V   G  F  GD++
Sbjct: 122 GIGESDVRVNFGGVTFFSGDHL 143


>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
           beige-like anchor protein LRBA {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 24.1 bits (52), Expect = 4.3
 Identities = 7/52 (13%), Positives = 13/52 (25%)

Query: 52  RVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH 103
            V+ G + V      F   +     K      L        K   +  + + 
Sbjct: 16  VVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIF 67


>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's
           yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 320

 Score = 24.5 bits (53), Expect = 5.0
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 99  RKWVHVEPKEGHVLHPL 115
            +WVHV+  E     P 
Sbjct: 222 NRWVHVDSCEQSFDQPY 238


>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
           pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
           2261]}
          Length = 279

 Score = 23.8 bits (51), Expect = 8.0
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 64  GTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH-VEPKEGHVLHPL 115
           G        V    D       EG+   ++ KLSGRK V+  E    HV+   
Sbjct: 179 GGAIASAKPVDFALDIVEV---EGKPIAKRGKLSGRKQVYRCENGHYHVVPAN 228


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,580
Number of extensions: 21274
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 11
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)