BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032859
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LXI5|RM54_DANRE 39S ribosomal protein L54, mitochondrial OS=Danio rerio GN=mrpl54
PE=3 SV=2
Length = 135
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 38 GKGAASDAPKASILSKEVK--STTVVGANILKEGSDPKVLPDSEYPDWLWHL 87
GKG + K + K+ T VG N+ K+G DP + P EYP+WL+ L
Sbjct: 45 GKGMVKEVLKGPEVCKDPAKLCTYAVGVNVFKQGEDPTIKPKDEYPEWLFQL 96
>sp|Q6P161|RM54_HUMAN 39S ribosomal protein L54, mitochondrial OS=Homo sapiens
GN=MRPL54 PE=1 SV=1
Length = 138
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 18 TVGKVGQRTFAA-GASKAKKGGKGA-ASDAPK-ASILSKEVKSTT-VVGANILKEGSDPK 73
T G++ R +A K K GKGA S+A K + + V+ TT +G NI KEG D
Sbjct: 26 TSGRLLARDYAKKPVMKGAKSGKGAVTSEALKDPDVCTDPVQLTTYAMGVNIYKEGQDVP 85
Query: 74 VLPDSEYPDWLWHL 87
+ PD+EYP+WL+ +
Sbjct: 86 LKPDAEYPEWLFEM 99
>sp|P36532|RM37_YEAST 54S ribosomal protein L37, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRPL37 PE=1
SV=2
Length = 105
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 59 TVVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDN 118
T + NI K G D L D EYP+WLW +L+ + E ++ E ++ ++ N
Sbjct: 34 TSLNLNIWKSGKDAVALEDKEYPNWLWSVLDSDHVV-EHAAEDPEGQALLKRRKNIRKAN 92
Query: 119 RAKIKENN 126
R +IK+NN
Sbjct: 93 RQRIKQNN 100
>sp|Q3MHJ5|RM54_BOVIN 39S ribosomal protein L54, mitochondrial OS=Bos taurus GN=MRPL54
PE=1 SV=1
Length = 138
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 57 STTVVGANILKEGSDPKVLPDSEYPDWLWHL 87
+T +G NI KEG D + PDSEYP+WL+ +
Sbjct: 69 TTHPMGVNIYKEGQDVVLKPDSEYPEWLFQM 99
>sp|Q9CPW3|RM54_MOUSE 39S ribosomal protein L54, mitochondrial OS=Mus musculus
GN=Mrpl54 PE=2 SV=1
Length = 135
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 57 STTVVGANILKEGSDPKVLPDSEYPDWL 84
+T +G NI KEG D + DSEYP WL
Sbjct: 66 TTHAMGVNIYKEGQDVALKADSEYPTWL 93
>sp|Q9Y7U8|RM37_SCHPO 54S ribosomal protein L37, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl37 PE=3 SV=1
Length = 139
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 58 TTVVGANILKEGSDPKVLPDSEYPDWLWHLLEK 90
T + G I G DP D EYP+WLW LL++
Sbjct: 81 TILKGLCIKAGGVDPVAREDHEYPEWLWSLLDE 113
>sp|Q8N2H3|PYRD2_HUMAN Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Homo sapiens GN=PYROXD2 PE=2 SV=2
Length = 581
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 30 GASKAKKGGKGAASDAPKASILSKEVKSTTVVGANILKEGSDPKV------------LPD 77
GA +GG GA SDA +S T GA+I E + KV L D
Sbjct: 278 GAWGYVQGGMGALSDAIASS--------ATTHGASIFTEKTVAKVQVNSEGCVQGVVLED 329
Query: 78 SEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKENN 126
L P ++ LK+ E LP E L+R +LD R+ + + N
Sbjct: 330 GTEVRSKMVLSNTSPQITFLKLTPQEWLPEEFLERISQLDTRSPVTKIN 378
>sp|Q5RAP5|PYRD2_PONAB Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Pongo abelii GN=PYROXD2 PE=2 SV=1
Length = 581
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 30 GASKAKKGGKGAASDAPKASILSKEVKSTTVVGANILKEGSDPKV------------LPD 77
GA +GG GA SDA +S T GA+I E + KV L D
Sbjct: 278 GAWGYVQGGMGALSDAIASS--------ATTHGASIFTEKTVAKVQVNSEGCVQGVVLED 329
Query: 78 SEYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRAKIKENN 126
L P ++ LK+ E LP E L+R +LD R+ + + N
Sbjct: 330 GTEVRSKVVLSNTSPQITFLKLTPQEWLPEEFLERISQLDTRSPVTKIN 378
>sp|A2RAN5|M28P1_ASPNC Probable zinc metalloprotease An18g03780 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=An18g03780 PE=3 SV=1
Length = 986
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 27 FAAGASKAKKGG-----KGAASDAPKASILSKEVKSTTVVGANILKEGSDPKVLPDSEYP 81
+ G++ A G AAS P + + T G G P+V+PD+ Y
Sbjct: 769 LSTGSTTASLAGVQPYVHAAASTLPSTANQNITCTEHTTRGTKCAWPGLAPRVVPDTPYS 828
Query: 82 DWL 84
DWL
Sbjct: 829 DWL 831
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 10 RSFIMVKETVGKVG--QRTFAA---GASKAKKGGKGAASDAPKASILSKEVKSTTVVGAN 64
R+ +V+E G G QR + GA+ K G + AAS PK ++ +E ++ V A
Sbjct: 313 RAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRAT 372
Query: 65 ILKEGSDPKVLPDS 78
L+ +P P S
Sbjct: 373 QLQGNEEPSAPPTS 386
>sp|Q98AP7|NIFH_RHILO Nitrogenase iron protein OS=Rhizobium loti (strain MAFF303099)
GN=nifH PE=3 SV=1
Length = 297
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 61 VGANILKEGSDPK-----VLPDSEYPDWLWHLLEKRPALSELKMKNIETLPYEDLK 111
+G IL G DPK ++ +++ D + HL + ++ +L+++++ + Y+D+K
Sbjct: 31 LGQKILIVGCDPKADSTRLILNAKAQDTVLHLAAQEGSVEDLELQDVLKIGYKDIK 86
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 10 RSFIMVKETVGKVG--QRTFAA---GASKAKKGGKGAASDAPKASILSKEVKSTTVVGAN 64
R+ +V+E G G QR + GA+ K G + AAS PK ++ +E ++ V A
Sbjct: 310 RAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRAT 369
Query: 65 ILKEGSDPKVLPDS 78
L+ +P P S
Sbjct: 370 QLQGDEEPSAPPTS 383
>sp|Q751D2|SRB8_ASHGO Mediator of RNA polymerase II transcription subunit 12 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=SRB8 PE=3 SV=2
Length = 1358
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 60 VVGANILKEGSDPKVLPDSEYPDWLWHLLEKRPALSELKMKNIETLP--YEDLKRFL 114
+V +L + + + LPD D +W L+ LSE ++ NI LP YE L F+
Sbjct: 509 LVAKLLLLKTTSQENLPDYNMEDMIWKLVFHFSKLSERELSNIVELPSLYELLNIFI 565
>sp|A1R4S6|HUTI_ARTAT Imidazolonepropionase OS=Arthrobacter aurescens (strain TC1)
GN=hutI PE=3 SV=1
Length = 409
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 33 KAKKG-GKGAASDAPKASILSKEVKSTTVVGANILKEGSDPKVLPD 77
++K G G ++A A I + EV T +GA+++ +GSDP+ D
Sbjct: 132 ESKTGYGLDVENEARSARIAAAEVDEVTYLGAHLVPDGSDPEEYTD 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,153,773
Number of Sequences: 539616
Number of extensions: 1722961
Number of successful extensions: 4457
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4439
Number of HSP's gapped (non-prelim): 34
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)