Query 032859
Match_columns 132
No_of_seqs 131 out of 208
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:50:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eo2_A Adult MALE hypothalamus 34.9 18 0.00063 24.2 1.7 18 100-117 45-62 (71)
2 3a7l_A H-protein, glycine clea 34.1 11 0.00039 27.0 0.7 52 57-115 74-126 (128)
3 1hpc_A H protein of the glycin 31.8 7.2 0.00025 28.2 -0.7 53 57-116 73-126 (131)
4 3uqz_A DNA processing protein 31.2 16 0.00054 29.9 1.1 21 73-93 74-94 (288)
5 2wl8_A Peroxisomal biogenesis 28.4 23 0.00079 25.8 1.5 9 78-86 40-48 (126)
6 3klr_A Glycine cleavage system 27.8 23 0.0008 25.5 1.4 53 57-116 69-122 (125)
7 3maj_A DNA processing chain A; 18.1 33 0.0011 29.0 0.6 26 68-93 87-112 (382)
8 1onl_A Glycine cleavage system 17.8 27 0.00091 25.0 0.0 52 57-115 73-125 (128)
9 2cou_A ECT2 protein; BRCT doma 16.1 23 0.00079 23.9 -0.7 15 81-95 76-90 (109)
10 1zko_A Glycine cleavage system 15.6 39 0.0013 24.5 0.4 52 57-115 82-134 (136)
No 1
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.87 E-value=18 Score=24.23 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=15.5
Q ss_pred cCCCCCCHHHHHHHHhHH
Q 032859 100 KNIETLPYEDLKRFLKLD 117 (132)
Q Consensus 100 ~~~e~l~~~~~kR~lkl~ 117 (132)
.+++.||.++.++|.||+
T Consensus 45 tdP~~LT~eEi~~FaRLd 62 (71)
T 2eo2_A 45 TDPSTLTEEEVRKFARLN 62 (71)
T ss_dssp CSTTTCCHHHHHHHHHTC
T ss_pred CCcccCCHHHHhhceecc
Confidence 477889999999999874
No 2
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=34.11 E-value=11 Score=26.97 Aligned_cols=52 Identities=19% Similarity=0.415 Sum_probs=33.9
Q ss_pred ccccccceecccCCCCccCCCCCCch-hhhhccCCccchHHHhhcCCCCCCHHHHHHHHh
Q 032859 57 STTVVGANILKEGSDPKVLPDSEYPD-WLWHLLEKRPALSELKMKNIETLPYEDLKRFLK 115 (132)
Q Consensus 57 ~~~~~g~Ni~K~g~dp~~~~D~eYP~-WLw~lld~~~~l~~l~~~~~e~l~~~~~kR~lk 115 (132)
+|+++-+|.- -+.+|.+..++-|-+ ||+.+.-..+. ++. + -|+.+++..++.
T Consensus 74 sG~V~evN~~-l~~~P~lvn~dpy~~gWl~~i~~~~~~--~~~--~--Ll~~~~Y~~~~~ 126 (128)
T 3a7l_A 74 SGEIVAVNDA-LSDSPELVNSEPYAGGWIFKIKASDES--ELE--S--LLDATAYEALLE 126 (128)
T ss_dssp SEEEEEECGG-GGTCTTHHHHCTTTTTCCEEEEESCGG--GGG--G--CBCHHHHHHHHH
T ss_pred CeEEEEEhhh-hccChHHhccCCCCCccEEEEEECCHH--HHH--h--cCCHHHHHHHHh
Confidence 6677666643 367898888888977 99999644432 221 1 266777777654
No 3
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=31.79 E-value=7.2 Score=28.18 Aligned_cols=53 Identities=25% Similarity=0.443 Sum_probs=35.2
Q ss_pred ccccccceecccCCCCccCCCCCCch-hhhhccCCccchHHHhhcCCCCCCHHHHHHHHhH
Q 032859 57 STTVVGANILKEGSDPKVLPDSEYPD-WLWHLLEKRPALSELKMKNIETLPYEDLKRFLKL 116 (132)
Q Consensus 57 ~~~~~g~Ni~K~g~dp~~~~D~eYP~-WLw~lld~~~~l~~l~~~~~e~l~~~~~kR~lkl 116 (132)
+|++.-+|.- -+.+|.+.-.+.|-+ ||+.+....+ +++. + -|+.+++..++..
T Consensus 73 sG~V~evn~~-l~~~P~lvn~dpy~~gWl~~i~~~~~--~~~~--~--Ll~~~~Y~~~~~~ 126 (131)
T 1hpc_A 73 SGEVIEVNTG-LTGKPGLINSSPYEDGWMIKIKPTSP--DELE--S--LLGAKEYTKFCEE 126 (131)
T ss_dssp CEEEEEECTH-HHHCTTHHHHCTTTTTCCEEEEESSG--GGGG--G--SBCHHHHHHHHHH
T ss_pred CeEEEEEhhh-hhcChhhhccCCCCCceEEEEEECCH--HHHH--h--cCCHHHHHHHHhh
Confidence 6677666643 367888888888877 9999964443 2221 1 2677888887763
No 4
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}
Probab=31.18 E-value=16 Score=29.90 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=17.1
Q ss_pred ccCCCCCCchhhhhccCCccc
Q 032859 73 KVLPDSEYPDWLWHLLEKRPA 93 (132)
Q Consensus 73 ~~~~D~eYP~WLw~lld~~~~ 93 (132)
.-.-|++||+-|-++.||++.
T Consensus 74 it~~D~~YP~~L~~i~dpP~~ 94 (288)
T 3uqz_A 74 FSILDDCYPWDLSEIYDAPVL 94 (288)
T ss_dssp EETTSTTSCHHHHTSTTCCSE
T ss_pred EccCcccchHHHHhCCCCCee
Confidence 345699999999999988754
No 5
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=28.37 E-value=23 Score=25.78 Aligned_cols=9 Identities=44% Similarity=1.287 Sum_probs=6.5
Q ss_pred CCCchhhhh
Q 032859 78 SEYPDWLWH 86 (132)
Q Consensus 78 ~eYP~WLw~ 86 (132)
+.||+||=.
T Consensus 40 ~kyP~WLe~ 48 (126)
T 2wl8_A 40 EKYPEWLQS 48 (126)
T ss_dssp TTHHHHHHH
T ss_pred HHhhHHHHh
Confidence 469999844
No 6
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=27.77 E-value=23 Score=25.46 Aligned_cols=53 Identities=28% Similarity=0.468 Sum_probs=34.9
Q ss_pred ccccccceecccCCCCccCCCCCCch-hhhhccCCccchHHHhhcCCCCCCHHHHHHHHhH
Q 032859 57 STTVVGANILKEGSDPKVLPDSEYPD-WLWHLLEKRPALSELKMKNIETLPYEDLKRFLKL 116 (132)
Q Consensus 57 ~~~~~g~Ni~K~g~dp~~~~D~eYP~-WLw~lld~~~~l~~l~~~~~e~l~~~~~kR~lkl 116 (132)
+|+++-+|--- ..+|.+.-.+-|-+ ||+.+--..+ +++. + -|+.+++..++..
T Consensus 69 sG~VvevN~~l-~~~P~liN~dpy~~gWl~ki~~~~~--~e~~--~--Ll~~~~Y~~~~~~ 122 (125)
T 3klr_A 69 SGEVTEINKAL-AENPGLVNKSCYEDGWLIKMTFSNP--SELD--E--LMSEEAYEKYIKS 122 (125)
T ss_dssp SEEEEEECGGG-TTCTTHHHHCTTTTTCCEEEEESCG--GGGG--G--SBCHHHHHHHHHH
T ss_pred CEEEEEEhhhh-hhChHhhcCCCCCCceEEEEEECCH--HHHH--h--cCCHHHHHHHHhh
Confidence 67887777543 35788888888865 9999954332 2222 1 2677888887653
No 7
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=18.09 E-value=33 Score=29.05 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.4
Q ss_pred cCCCCccCCCCCCchhhhhccCCccc
Q 032859 68 EGSDPKVLPDSEYPDWLWHLLEKRPA 93 (132)
Q Consensus 68 ~g~dp~~~~D~eYP~WLw~lld~~~~ 93 (132)
.|-.....-|++||..|-++-|+++.
T Consensus 87 ~g~~~it~~D~~YP~~L~~i~dpP~~ 112 (382)
T 3maj_A 87 IGVELVAPGETGYPTRLATIDDAPPL 112 (382)
T ss_dssp TTEEEECTTSTTSCHHHHTSTTCCSS
T ss_pred CCCEEECCCchhccHHHHhccCCCce
Confidence 34446678899999999999888753
No 8
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=17.84 E-value=27 Score=24.96 Aligned_cols=52 Identities=17% Similarity=0.431 Sum_probs=33.1
Q ss_pred ccccccceecccCCCCccCCCCCCch-hhhhccCCccchHHHhhcCCCCCCHHHHHHHHh
Q 032859 57 STTVVGANILKEGSDPKVLPDSEYPD-WLWHLLEKRPALSELKMKNIETLPYEDLKRFLK 115 (132)
Q Consensus 57 ~~~~~g~Ni~K~g~dp~~~~D~eYP~-WLw~lld~~~~l~~l~~~~~e~l~~~~~kR~lk 115 (132)
+|+++-+|.-- +.||.+.-.+.|-+ ||+.+.-..+ +++. + -|+.+++..++.
T Consensus 73 sG~V~evn~~l-~~~P~lvn~dpy~~gWl~~i~~~~~--~~~~--~--Ll~~~~Y~~~~~ 125 (128)
T 1onl_A 73 AGEIVEVNLAL-EKTPELVNQDPYGEGWIFRLKPRDM--GDLD--E--LLDAGGYQEVLE 125 (128)
T ss_dssp SEEEEEECTHH-HHCTTHHHHCTTTTTCCEEEEESCG--GGGG--G--SBCHHHHHHHHH
T ss_pred CeEEEEEhhhh-ccChhhhccCCCCCccEEEEEECCH--HHHH--h--cCCHHHHHHHHh
Confidence 66775555432 56788887777987 9999964443 2221 1 266777777664
No 9
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=16.07 E-value=23 Score=23.94 Aligned_cols=15 Identities=13% Similarity=0.691 Sum_probs=11.5
Q ss_pred chhhhhccCCccchH
Q 032859 81 PDWLWHLLEKRPALS 95 (132)
Q Consensus 81 P~WLw~lld~~~~l~ 95 (132)
|+|||+.++....+.
T Consensus 76 ~~Wl~dsi~~g~~ld 90 (109)
T 2cou_A 76 QEWFWGSIQMDARAG 90 (109)
T ss_dssp HHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHcCCcCC
Confidence 899999987765443
No 10
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=15.59 E-value=39 Score=24.48 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=32.1
Q ss_pred ccccccceecccCCCCccCCCCCCch-hhhhccCCccchHHHhhcCCCCCCHHHHHHHHh
Q 032859 57 STTVVGANILKEGSDPKVLPDSEYPD-WLWHLLEKRPALSELKMKNIETLPYEDLKRFLK 115 (132)
Q Consensus 57 ~~~~~g~Ni~K~g~dp~~~~D~eYP~-WLw~lld~~~~l~~l~~~~~e~l~~~~~kR~lk 115 (132)
+|++.-+|.-- ..+|.+..++-|-+ ||+.+.-..+ +++. + -|+.+++..++.
T Consensus 82 sG~V~eiN~~l-~~~p~~Vn~dp~g~GwL~~i~~~~~--~~~~--~--Ll~~~~Y~~~~~ 134 (136)
T 1zko_A 82 SGKIVEVNEKL-DTEPELINKDPEGEGWLFKMEISDE--GELE--D--LLDEQAYQEFCA 134 (136)
T ss_dssp CEEEEEECGGG-GTCTTHHHHCTTTTTCCEEEEESCG--GGGG--G--SBCHHHHHHHHH
T ss_pred CeEEEEEehhh-ccCccCcccCCCCCeEEEEEEECCH--HHHH--h--CCCHHHHHHHHh
Confidence 56776666322 45677777777887 9999964332 2221 1 266777777654
Done!