Query 032859
Match_columns 132
No_of_seqs 131 out of 208
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:50:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032859.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032859hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ogya1 b.52.2.2 (A:682-801) P 31.6 4.4 0.00032 26.3 -0.1 11 76-86 1-11 (120)
2 d1hpca_ b.84.1.1 (A:) Protein 23.5 11 0.00077 25.5 0.7 52 57-116 73-126 (131)
3 d2jioa1 b.52.2.2 (A:601-723) P 22.6 9.6 0.0007 24.6 0.3 12 75-86 4-15 (123)
4 d2g84a1 c.97.1.2 (A:1-189) Put 17.7 27 0.002 24.6 1.9 33 79-120 8-40 (189)
5 d1onla_ b.84.1.1 (A:) Protein 17.5 15 0.0011 24.5 0.3 52 57-116 72-125 (127)
6 d1pzra_ a.38.2.1 (A:) Erythron 15.2 9.9 0.00072 22.9 -1.0 35 82-116 4-39 (60)
7 d1cdza_ c.15.1.1 (A:) DNA-repa 13.4 20 0.0015 21.1 0.1 14 81-94 72-85 (96)
8 d1qasa1 a.39.1.7 (A:205-298) P 8.7 86 0.0063 18.7 2.0 34 86-119 2-38 (94)
9 d1wf6a_ c.15.1.5 (A:) DNA topo 8.3 20 0.0014 23.1 -1.4 12 81-92 106-117 (132)
10 d2iv2x1 b.52.2.2 (X:565-715) F 7.9 51 0.0037 21.8 0.6 15 72-86 1-15 (151)
No 1
>d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=31.64 E-value=4.4 Score=26.34 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=9.7
Q ss_pred CCCCCchhhhh
Q 032859 76 PDSEYPDWLWH 86 (132)
Q Consensus 76 ~D~eYP~WLw~ 86 (132)
||+|||=||-+
T Consensus 1 Pd~~yP~~L~T 11 (120)
T d1ogya1 1 PDEEFGFWLVT 11 (120)
T ss_dssp CCSSSCEEEEE
T ss_pred CCCCCCEEEEe
Confidence 89999988876
No 2
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}
Probab=23.46 E-value=11 Score=25.45 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=32.6
Q ss_pred ccccccceecccCCCCccCCCCCCch-hhhhccCCcc-chHHHhhcCCCCCCHHHHHHHHhH
Q 032859 57 STTVVGANILKEGSDPKVLPDSEYPD-WLWHLLEKRP-ALSELKMKNIETLPYEDLKRFLKL 116 (132)
Q Consensus 57 ~~~~~g~Ni~K~g~dp~~~~D~eYP~-WLw~lld~~~-~l~~l~~~~~e~l~~~~~kR~lkl 116 (132)
+|+++-+|--- ..||.++-++.|-+ ||+.+--..+ .+..| |+.++++.|+..
T Consensus 73 ~G~vv~vN~~l-~~~P~llN~dpy~~gWl~~i~~~d~~~~~~L-------l~~~~Y~~~~~e 126 (131)
T d1hpca_ 73 SGEVIEVNTGL-TGKPGLINSSPYEDGWMIKIKPTSPDELESL-------LGAKEYTKFCEE 126 (131)
T ss_dssp CEEEEEECTHH-HHCTTHHHHCTTTTTCCEEEEESSGGGGGGS-------BCHHHHHHHHHH
T ss_pred chhheeehhhh-hhCHHHHhCCCCCCcEEEEEEECCHHHHHhC-------CCHHHHHHHHhh
Confidence 56665555221 45788888888865 9999843322 22222 677888888754
No 3
>d2jioa1 b.52.2.2 (A:601-723) Periplasmic nitrate reductase alpha chain, NapA {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=22.59 E-value=9.6 Score=24.62 Aligned_cols=12 Identities=50% Similarity=0.833 Sum_probs=9.5
Q ss_pred CCCCCCchhhhh
Q 032859 75 LPDSEYPDWLWH 86 (132)
Q Consensus 75 ~~D~eYP~WLw~ 86 (132)
.||+|||=||-+
T Consensus 4 ~pd~~yPl~L~t 15 (123)
T d2jioa1 4 EPDAEYPLYLTS 15 (123)
T ss_dssp CCCSSSCEEEEE
T ss_pred CCCCCCCEEEEc
Confidence 368999988854
No 4
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]}
Probab=17.72 E-value=27 Score=24.59 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=19.9
Q ss_pred CCchhhhhccCCccchHHHhhcCCCCCCHHHHHHHHhHHHHH
Q 032859 79 EYPDWLWHLLEKRPALSELKMKNIETLPYEDLKRFLKLDNRA 120 (132)
Q Consensus 79 eYP~WLw~lld~~~~l~~l~~~~~e~l~~~~~kR~lkl~nR~ 120 (132)
.||+|||........+. .+.+.+++-+.+.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~---------~~e~~M~~ai~lAr~a 40 (189)
T d2g84a1 8 GLPPFLVQANNEPRVLA---------APEARMGYVLELVRAN 40 (189)
T ss_dssp ECCHHHHHHHHSCCBCC---------SHHHHHHHHHHHHHHH
T ss_pred ccCHHHHhcccCCcCCC---------ChHHHHHHHHHHHHHH
Confidence 48999999965543221 1124466777666654
No 5
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}
Probab=17.47 E-value=15 Score=24.51 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=34.1
Q ss_pred ccccccceecccCCCCccCCCCCCc-hhhhhccCCc-cchHHHhhcCCCCCCHHHHHHHHhH
Q 032859 57 STTVVGANILKEGSDPKVLPDSEYP-DWLWHLLEKR-PALSELKMKNIETLPYEDLKRFLKL 116 (132)
Q Consensus 57 ~~~~~g~Ni~K~g~dp~~~~D~eYP-~WLw~lld~~-~~l~~l~~~~~e~l~~~~~kR~lkl 116 (132)
+|+++.+|-- -..||.++-.+.|- -||+.+--.. ..+.+| |+.++++.|+.-
T Consensus 72 sG~Vv~vN~~-l~~~P~lin~dpy~~gWl~~ik~~d~~~~~~L-------l~~~~Y~~~l~~ 125 (127)
T d1onla_ 72 AGEIVEVNLA-LEKTPELVNQDPYGEGWIFRLKPRDMGDLDEL-------LDAGGYQEVLES 125 (127)
T ss_dssp SEEEEEECTH-HHHCTTHHHHCTTTTTCCEEEEESCGGGGGGS-------BCHHHHHHHHHH
T ss_pred cceEEEEhhh-hhhCHHHhcCCCCCCCEEEEEEECCHHHHHHc-------CCHHHHHHHHhh
Confidence 5688777732 25688888888885 6999984222 222232 678888887653
No 6
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=15.20 E-value=9.9 Score=22.89 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=19.7
Q ss_pred hhhhhccCCccc-hHHHhhcCCCCCCHHHHHHHHhH
Q 032859 82 DWLWHLLEKRPA-LSELKMKNIETLPYEDLKRFLKL 116 (132)
Q Consensus 82 ~WLw~lld~~~~-l~~l~~~~~e~l~~~~~kR~lkl 116 (132)
+=||.|+|.+-. -+.|-...-..++.+.++||++.
T Consensus 4 delfsmldqrfgggedllms~~~gmtedkLRRYLkR 39 (60)
T d1pzra_ 4 DELFSMLDQRFGGGEDLLMSGDNGMTEEKLRRYLKR 39 (60)
T ss_dssp HHHHHHHHHHHHCCCSSCCCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcchhhccCCCCCCHHHHHHHHHH
Confidence 347777776511 01111122345788889999874
No 7
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.38 E-value=20 Score=21.15 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=11.1
Q ss_pred chhhhhccCCccch
Q 032859 81 PDWLWHLLEKRPAL 94 (132)
Q Consensus 81 P~WLw~lld~~~~l 94 (132)
|+|||.+......+
T Consensus 72 ~~Wl~dc~~~~~~l 85 (96)
T d1cdza_ 72 PRWIYSCNEKQKLL 85 (96)
T ss_dssp THHHHHHHTTTSCC
T ss_pred EhHHHHHHHcCCcC
Confidence 89999998776443
No 8
>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.65 E-value=86 Score=18.73 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=20.3
Q ss_pred hccCCccchHHHh---hcCCCCCCHHHHHHHHhHHHH
Q 032859 86 HLLEKRPALSELK---MKNIETLPYEDLKRFLKLDNR 119 (132)
Q Consensus 86 ~lld~~~~l~~l~---~~~~e~l~~~~~kR~lkl~nR 119 (132)
++|..++-+.++- ..+-+.++.+++.+|++...+
T Consensus 2 ~~l~~R~ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~ 38 (94)
T d1qasa1 2 KMLTQRAEIDRAFEEAAGSAETLSVERLVTFLQHQQR 38 (94)
T ss_dssp TTTSCCHHHHHHHHHHHTTSSSCBHHHHHHHHHHTSC
T ss_pred CCCCccHHHHHHHHHHhCCCCccCHHHHHHHHHHHcC
Confidence 3455555544442 123356888899998887544
No 9
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.32 E-value=20 Score=23.08 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=9.9
Q ss_pred chhhhhccCCcc
Q 032859 81 PDWLWHLLEKRP 92 (132)
Q Consensus 81 P~WLw~lld~~~ 92 (132)
|+|||+++....
T Consensus 106 ~~Wl~~c~~~~~ 117 (132)
T d1wf6a_ 106 AKWLLECFSKGY 117 (132)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHcCC
Confidence 899999987663
No 10
>d2iv2x1 b.52.2.2 (X:565-715) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}
Probab=7.86 E-value=51 Score=21.83 Aligned_cols=15 Identities=33% Similarity=0.279 Sum_probs=11.2
Q ss_pred CccCCCCCCchhhhh
Q 032859 72 PKVLPDSEYPDWLWH 86 (132)
Q Consensus 72 p~~~~D~eYP~WLw~ 86 (132)
|.=..|+|||=||-+
T Consensus 1 P~e~~~~eyP~~L~T 15 (151)
T d2iv2x1 1 PIDKLTDEYPMVLST 15 (151)
T ss_dssp CSSCCCSSSCEEEEE
T ss_pred CCCCCCCCCCEEEEc
Confidence 444578999999954
Done!