BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032860
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 76/132 (57%), Positives = 101/132 (76%)
Query: 1 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRY 60
M V D K F EL+ K+ HR++++KI+ G P ++YE+FAA LP ++CRY
Sbjct: 8 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67
Query: 61 AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
A+YDFD+VT+ENCQKSKIFFIAW P +++R+KM+YA+SKDRF+RELDGI E+QATDPT
Sbjct: 68 AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127
Query: 121 EMDLEELRNRAN 132
EMDL+ R+RAN
Sbjct: 128 EMDLDVFRSRAN 139
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 1 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRY 60
+ V+D F EL+ HRYV FK++ GGP +YEDF + LPE DCRY
Sbjct: 3 IAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRY 62
Query: 61 AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
A++D+++ + Q++KI FI W+P ++ I++KM+Y ++KD +++L GI E+QATD
Sbjct: 63 AIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAA 121
Query: 121 EMDLEELRNRA 131
E+ + + RA
Sbjct: 122 EISEDAVSERA 132
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 1 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRY 60
+ V+D F EL+ HRYV FK++ GGP +YEDF + LPE DCRY
Sbjct: 3 IAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRY 62
Query: 61 AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
A++D+++ + Q++KI FI W+P ++ I++KM+Y ++KD +++L GI E+QATD
Sbjct: 63 AIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAA 121
Query: 121 EMDLEELRNRA 131
E+ + + RA
Sbjct: 122 EISEDAVSERA 132
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 1 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRY 60
+ VAD S AF +L+ K +++++F ++ T SY+ F LPENDC Y
Sbjct: 6 VAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETS-TDPSYDAFLEKLPENDCLY 64
Query: 61 AVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDP 119
A+YDF+Y + ++SKI F WSP T+ +R+KM+YA+SKD RR L+G+ ++Q TD
Sbjct: 65 AIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDF 124
Query: 120 TEMDLEELRNRAN 132
+E+ + + R +
Sbjct: 125 SEVSYDSVLERVS 137
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 3 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAV 62
V+ AF EL+ K RYV+FK++ + ++ F LPE DCRYA+
Sbjct: 8 VSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRYAI 66
Query: 63 YDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 122
YDF++ E ++KI FI+WSP + I++KM+Y++SKD RR GI +IQATD +E+
Sbjct: 67 YDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEV 125
Query: 123 DLEELRNRAN 132
E + +
Sbjct: 126 AYETVLEKVT 135
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 46 YEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRR 105
Y F LP+ DCRYA+YD Y T E+ +K + FI W+P ++ +++KM+YA+SKD ++
Sbjct: 68 YATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKK 126
Query: 106 ELDGIHYEIQA 116
+L GI +E+QA
Sbjct: 127 KLTGIKHELQA 137
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 44 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRF 103
+ ++ F LPE DCRYA+YD + T E+ +K ++ F W+P + +++KM+YA+SKD
Sbjct: 75 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAI 133
Query: 104 RRELDGIHYEIQATDPTEMD 123
+++ GI +E QA P +++
Sbjct: 134 KKKFQGIKHECQANGPEDLN 153
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 6/89 (6%)
Query: 44 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRF 103
+ Y F LP NDCRYA+YD Y T E+ +K + FI W+P ++ +++KM+YA+SKD
Sbjct: 66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAI 124
Query: 104 RRELDGIHYEIQATDPTEMDLEELRNRAN 132
+++ GI +E Q L+++++R+
Sbjct: 125 KKKFTGIKHEWQVN-----GLDDIKDRST 148
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 1 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRY 60
MGV ++ F EL+ +K ++++FKI+ G + ++F ALP NDCR+
Sbjct: 26 MGVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGKG----NADEFRGALPANDCRF 81
Query: 61 AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDG 109
VYD +KI F+ W P + ++ +M YA+SKD ++LDG
Sbjct: 82 GVYDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDG 121
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Query: 1 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRY 60
+ VAD A +L+ KK RYVI I G +++ F A+ +N Y
Sbjct: 14 VSVADECVTALNDLRHKK-SRYVIMHI-VDQKSIAVKTIGERGANFDQFIEAIDKNVPCY 71
Query: 61 AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPT 120
A +DF+Y T++ + K+ I+W+P + R KMLY++S+D G IQA D +
Sbjct: 72 AAFDFEYTTNDG-PRDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQANDAS 129
Query: 121 EMDLEELRNRA 131
+D EE+ +
Sbjct: 130 GLDFEEISRKV 140
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 1 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYED-----FAAALPE 55
+ V+D F L+ K +++Y+I+KI+ + D L
Sbjct: 10 VNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKN 69
Query: 56 NDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 115
+CRY + D T E + +I+FI WSP S+ + KMLYA SK+ R+++GI ++
Sbjct: 70 TECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLE 129
Query: 116 AT-DPTEMDLEELR 128
T D E + EEL+
Sbjct: 130 ITCDINEFE-EELK 142
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 8 KNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY 67
+ A +L+ KK RYV+ I G + +Y D Y +DF+Y
Sbjct: 13 RGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEY 71
Query: 68 VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 127
++ K+ I W P T+R R KM+Y+ S+D +G + IQA D + +D EE+
Sbjct: 72 -NDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQANDESGLDAEEI 129
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 16 RKKVHRYVIFKIDXXXXXXXXXXTGGPAESYE-DFAA-ALPENDCRYAVYDFDYVTSENC 73
R + +Y + KI P++S+E D+ + LP + + Y + S+N
Sbjct: 19 RARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNA 78
Query: 74 QKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIH 111
Q + FIAWSP S +R KMLYA ++ ++E G H
Sbjct: 79 QGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGH 116
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 51 AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGI 110
A LP D + Y + S+N Q + F+AWSP S +R KMLYA ++ ++E G
Sbjct: 53 AVLPLLDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGG 112
Query: 111 H 111
H
Sbjct: 113 H 113
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 45 SYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFR 104
S E+ LPE R+ VY + YV + + FI SP + +M+YA SK+R
Sbjct: 59 SPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV 118
Query: 105 R--ELDGIHYEIQATD 118
+ EL + +EI+ TD
Sbjct: 119 QTAELTKV-FEIRTTD 133
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 45 SYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFR 104
S E+ LPE R+ VY + YV + + FI SP + +M+YA SK+R
Sbjct: 49 SPEELKMELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV 108
Query: 105 R--ELDGIHYEIQATD 118
+ EL + +EI+ TD
Sbjct: 109 QTAELTKV-FEIRTTD 123
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 45 SYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFR 104
S E+ LPE R+ VY + YV + + FI SP + +M+YA SK+R
Sbjct: 65 SPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV 124
Query: 105 R--ELDGIHYEIQATD 118
+ EL + +EI+ TD
Sbjct: 125 QTAELTKV-FEIRTTD 139
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 3 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPEND---CR 59
V D+ F ++ +K ++IF I + G + + + ++ +N+ C
Sbjct: 9 VNDNCVTEFNNMKIRKTCGWIIFVIQNCEIIIH---SKGASTTLTELVQSIDKNNEIQCA 65
Query: 60 YAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDP 119
Y V+D SKI F ++ +S R +M YA+SK ++++G++ +
Sbjct: 66 YVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIES 116
Query: 120 TEMDLEELR 128
+ D+ +L+
Sbjct: 117 AQ-DVADLK 124
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 9 NAFTELQRKKVHR----YVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPEND---CRYA 61
N TE K+ + ++IF I + G + + + ++ +N+ C Y
Sbjct: 12 NCVTEFNNMKIRKTCXGWIIFVIQNXCEIIIH--SKGASTTLTELVQSIDKNNEIQCAYV 69
Query: 62 VYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIH 111
V+D SKI F ++ +S R +M YA+SK ++++G++
Sbjct: 70 VFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVN 110
>pdb|1V6F|A Chain A, Solution Structure Of Glia Maturation Factor-Beta From Mus
Musculus
Length = 151
Score = 32.7 bits (73), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 45 SYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRF 103
S ++ LPE R+ VY + Y + + FI SP + +M+YA SK++
Sbjct: 59 SPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKL 117
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 7 SKNAFTELQR--KKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYD 64
S++AF L++ KK YV +ID T D +P++ RY +
Sbjct: 25 SRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENT--ELRDLPKRIPKDSARYHFFL 82
Query: 65 FDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSK 100
+ + + +S +F + T IR +MLY++ K
Sbjct: 83 YKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCK 118
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 7 SKNAFTELQR--KKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYD 64
S++AF L++ KK YV +ID T D +P++ RY +
Sbjct: 9 SRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTEN--TELRDLPKRIPKDSARYHFFL 66
Query: 65 FDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSK 100
+ + + +S +F + T IR +MLY++ K
Sbjct: 67 YKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCK 102
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 7 SKNAFTELQR--KKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYD 64
S++AF L++ KK YV +ID T D +P++ RY +
Sbjct: 30 SRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENT--ELRDLPKRIPKDSARYHFFL 87
Query: 65 FDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSK 100
+ + + +S +F + T IR +MLY++ K
Sbjct: 88 YKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCK 123
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 1 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRY 60
M + ++ A +L++K V+ Y+ K+D T P + + + +P + RY
Sbjct: 2 MPLQPEAQRALQQLKQKMVN-YIQMKLDLERETIELVHTE-PTDVAQ-LPSRVPRDAARY 58
Query: 61 AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGI----HYEI 114
+ + + + +S +F + I+ +MLY++ K R LD + H EI
Sbjct: 59 HFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRL---LDSVEQDFHLEI 113
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
(Tm0262) From Thermotoga Maritima At 2.00 A Resolution
Length = 378
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 93 KMLYATSKDRFRRELDGIHYEIQ 115
K+++A +KD F R L+G+ +E+
Sbjct: 152 KVIFAAAKDEFMRNLNGVFWELH 174
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 41 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 94
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 93 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 147
Query: 95 LYATSKDRFRR 105
+ + + + R
Sbjct: 148 THRENHNAYHR 158
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 41 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 94
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 152
Query: 95 LYATSKDRFRR 105
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 41 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 94
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 152
Query: 95 LYATSKDRFRR 105
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 41 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 94
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 152
Query: 95 LYATSKDRFRR 105
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 41 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 94
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAYYSSGANDEV 152
Query: 95 LYATSKDRFRR 105
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 41 GPAESYEDFA------AALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKM 94
P E+ ED A + LP D +YDF+Y+ S+ K AW+ +S ++
Sbjct: 98 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQ-----AWAFYSSGANDEV 152
Query: 95 LYATSKDRFRR 105
+ + + + R
Sbjct: 153 THRENHNAYHR 163
>pdb|2BID|A Chain A, Human Pro-Apoptotic Protein Bid
Length = 197
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 95 LYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 132
L + S + FRRELD + +E+ P +EL+ N
Sbjct: 27 LQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGN 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,565,088
Number of Sequences: 62578
Number of extensions: 121531
Number of successful extensions: 238
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 32
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)