Query 032860
Match_columns 132
No_of_seqs 125 out of 1052
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 7.9E-45 1.7E-49 251.0 16.1 131 1-131 10-140 (141)
2 PF00241 Cofilin_ADF: Cofilin/ 100.0 5.7E-40 1.2E-44 222.7 14.9 127 5-132 1-127 (127)
3 cd00013 ADF Actin depolymerisa 100.0 8.8E-40 1.9E-44 223.0 15.3 130 1-131 3-132 (132)
4 KOG1735 Actin depolymerizing f 100.0 2.7E-40 5.8E-45 225.8 11.3 132 1-132 5-141 (146)
5 smart00102 ADF Actin depolymer 100.0 9.8E-39 2.1E-43 217.0 15.6 127 5-132 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 1E-34 2.2E-39 195.6 8.0 110 1-122 5-118 (122)
7 KOG1736 Glia maturation factor 99.9 7E-26 1.5E-30 149.8 12.4 130 2-132 9-141 (143)
8 KOG1747 Protein tyrosine kinas 99.9 5E-25 1.1E-29 165.2 12.0 129 1-132 177-311 (342)
9 KOG1747 Protein tyrosine kinas 99.9 2E-23 4.2E-28 156.7 9.4 121 2-131 8-135 (342)
10 KOG3655 Drebrins and related a 99.8 1E-19 2.2E-24 143.4 12.0 123 5-132 11-134 (484)
11 PF11663 Toxin_YhaV: Toxin wit 41.8 33 0.00071 23.7 2.8 27 59-92 80-107 (140)
12 KOG4037 Photoreceptor synaptic 41.4 1E+02 0.0022 22.4 5.4 47 20-66 86-136 (240)
13 KOG2313 Stress-induced protein 37.5 54 0.0012 21.2 3.2 31 87-121 66-99 (100)
14 PRK11470 hypothetical protein; 31.9 1.8E+02 0.0038 21.3 5.5 46 19-67 36-83 (200)
15 TIGR03126 one_C_fae formaldehy 31.6 44 0.00095 23.6 2.2 32 79-110 112-143 (160)
16 COG1888 Uncharacterized protei 30.0 1.5E+02 0.0033 19.0 4.3 52 6-58 23-74 (97)
17 PF12663 DUF3788: Protein of u 29.9 63 0.0014 21.9 2.7 29 2-30 91-119 (133)
18 PTZ00248 eukaryotic translatio 26.3 3.3E+02 0.0071 21.5 6.5 53 14-66 64-116 (319)
19 PRK04968 SecY interacting prot 25.7 1.5E+02 0.0032 21.4 4.1 34 22-55 139-177 (181)
20 PF02680 DUF211: Uncharacteriz 25.3 73 0.0016 20.5 2.2 49 9-58 24-72 (95)
21 KOG0444 Cytoskeletal regulator 23.5 1.8E+02 0.0038 26.0 4.8 48 58-108 528-575 (1255)
22 PF11341 DUF3143: Protein of u 23.5 64 0.0014 19.2 1.6 29 79-107 31-60 (63)
23 PF06110 DUF953: Eukaryotic pr 22.9 47 0.001 22.1 1.1 33 45-86 4-40 (119)
24 PF00106 adh_short: short chai 22.8 1.3E+02 0.0028 19.9 3.4 34 75-108 127-160 (167)
25 PF13645 YkuD_2: L,D-transpept 22.5 1.3E+02 0.0028 21.6 3.3 47 53-107 44-92 (176)
26 PF03400 DDE_Tnp_IS1: IS1 tran 21.8 1.3E+02 0.0027 20.4 3.0 47 14-60 14-61 (131)
27 COG4075 Uncharacterized conser 20.1 2.2E+02 0.0048 18.6 3.7 26 4-29 75-102 (110)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=7.9e-45 Score=250.98 Aligned_cols=131 Identities=69% Similarity=1.179 Sum_probs=124.8
Q ss_pred CccCHhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeEEE
Q 032860 1 MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~vf 80 (132)
|+|+++|.++|++|+.++.+|||+|+|+.++++|+|++.+..+.+|++|++.||+++|||++|||++++++|+.+++++|
T Consensus 10 i~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~klvF 89 (141)
T PLN03216 10 MWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKSKIFF 89 (141)
T ss_pred CeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcccCEEE
Confidence 68999999999999998778999999999988999988765567899999999999999999999999999999999999
Q ss_pred EEecCCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032860 81 IAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 131 (132)
Q Consensus 81 I~w~P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
|+|||++|++|.||+|||+|++|++.|+|++++|||+|.+||+++.+.++|
T Consensus 90 I~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~ 140 (141)
T PLN03216 90 IAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA 140 (141)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987
No 2
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=5.7e-40 Score=222.74 Aligned_cols=127 Identities=43% Similarity=0.837 Sum_probs=119.2
Q ss_pred HhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeEEEEEec
Q 032860 5 DHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWS 84 (132)
Q Consensus 5 ~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~ 84 (132)
|+|.++|++|+.+++++|++|+|+.++++|+++++|+...++++|.+.||+++|||++||+.++++ |+.+++++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 789999999999988999999999998999999987556899999999999999999999999877 6799999999999
Q ss_pred CCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032860 85 PSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 132 (132)
Q Consensus 85 P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|++||+|+||+|||++.+|++.++|++++++++|++||+++.|++||.
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999974
No 3
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=8.8e-40 Score=223.01 Aligned_cols=130 Identities=53% Similarity=0.922 Sum_probs=121.6
Q ss_pred CccCHhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeEEE
Q 032860 1 MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~vf 80 (132)
|+++++|.++|++|+.+++++||+|+|+.++++|++++++....++++|.+.||+++|||++||++++++ |+.+++++|
T Consensus 3 i~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~vf 81 (132)
T cd00013 3 IKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKIVF 81 (132)
T ss_pred ceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCEEE
Confidence 5789999999999998877999999999988999999887533589999999999999999999998876 788999999
Q ss_pred EEecCCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhh
Q 032860 81 IAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 131 (132)
Q Consensus 81 I~w~P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
|+|||++||+|.||+|||++.+|++.++|+++++++++.+||+++.|.+++
T Consensus 82 I~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 82 IYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999875
No 4
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=2.7e-40 Score=225.83 Aligned_cols=132 Identities=58% Similarity=1.038 Sum_probs=124.7
Q ss_pred CccCHhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCC---CCCeeEEEEeeeeecCC--Ccee
Q 032860 1 MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALP---ENDCRYAVYDFDYVTSE--NCQK 75 (132)
Q Consensus 1 i~vs~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~---~~~pry~~~~~~~~~~~--~~~~ 75 (132)
|.|+|+|+.+|++|+.++.+|||+|+|+.++..|++++.|.++.+|++|...|| .++|||++||+++.+.. .+..
T Consensus 5 v~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g~~~~ 84 (146)
T KOG1735|consen 5 VAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESGNCKK 84 (146)
T ss_pred eEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeecccccee
Confidence 579999999999999998999999999999889999998888999999999999 99999999999999843 3578
Q ss_pred eeEEEEEecCCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032860 76 SKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 132 (132)
Q Consensus 76 ~k~vfI~w~P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
+|++||.|||++||+|+||+|||++++|++.|.|+++++||+|++|++++.|.++++
T Consensus 85 ~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl~ 141 (146)
T KOG1735|consen 85 SKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKLG 141 (146)
T ss_pred eeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999874
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=9.8e-39 Score=217.04 Aligned_cols=127 Identities=46% Similarity=0.902 Sum_probs=118.6
Q ss_pred HhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeEEEEEec
Q 032860 5 DHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWS 84 (132)
Q Consensus 5 ~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~ 84 (132)
++|.++|++|+++++.+||+|+|+.++++|+++++|.++++|++|++.||+++|||++||++++++ ++.+++++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 479999999999877999999999998999999887556789999999999999999999998875 4688999999999
Q ss_pred CCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032860 85 PSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 132 (132)
Q Consensus 85 P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|++||+|.||+|||++.+|++.++|+++.+++++.+||+++.|.+++.
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999874
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=1e-34 Score=195.58 Aligned_cols=110 Identities=25% Similarity=0.571 Sum_probs=97.8
Q ss_pred CccCHhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCC---eeEEEEeeeeecCCCceeee
Q 032860 1 MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPEND---CRYAVYDFDYVTSENCQKSK 77 (132)
Q Consensus 1 i~vs~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~---pry~~~~~~~~~~~~~~~~k 77 (132)
|+++++|.++|++|+.++.+|||+|+|++ ++|+|++.++ ..+|++|++.||+++ |||++|++. ++
T Consensus 5 i~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~---------~k 72 (122)
T PTZ00152 5 IRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV---------NK 72 (122)
T ss_pred cCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC---------CC
Confidence 68999999999999998889999999964 7899988875 468999999999988 999999873 47
Q ss_pred EEEEEecCCCCChhhhhHhHHhHHHHHhhcCCee-EEEEeCCCCCC
Q 032860 78 IFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIH-YEIQATDPTEM 122 (132)
Q Consensus 78 ~vfI~w~P~~a~vk~kMlyas~k~~l~~~l~g~~-~~i~~~d~~dl 122 (132)
++||+|||++|++|.||+|||||++|++.+.|++ +..++++.+||
T Consensus 73 lvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~ 118 (122)
T PTZ00152 73 IHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDV 118 (122)
T ss_pred EEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhh
Confidence 9999999999999999999999999999999986 35566666665
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.94 E-value=7e-26 Score=149.78 Aligned_cols=130 Identities=22% Similarity=0.409 Sum_probs=116.9
Q ss_pred ccCHhHHHHHHHHHhC-C--ceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeE
Q 032860 2 GVADHSKNAFTELQRK-K--VHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKI 78 (132)
Q Consensus 2 ~vs~e~~~a~~~l~~~-~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~ 78 (132)
.|+++..+.++.++-. + +...+|++|+.++..|+++..--...+.+|+.+.||+.+|||++|.|.+++++|+...++
T Consensus 9 ~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~stPL 88 (143)
T KOG1736|consen 9 KIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRVSTPL 88 (143)
T ss_pred EeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCcccccE
Confidence 4788999999998765 2 367999999999999999843223678899999999999999999999999999999999
Q ss_pred EEEEecCCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032860 79 FFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 132 (132)
Q Consensus 79 vfI~w~P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
+||||.|-+|+.-.+|+||++|.-+.+.. ++++.+++++-+|++++++.++++
T Consensus 89 ~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 89 CFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred EEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHHHHHHHhh
Confidence 99999999999999999999999999888 788899999999999999999874
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.93 E-value=5e-25 Score=165.24 Aligned_cols=129 Identities=22% Similarity=0.405 Sum_probs=114.9
Q ss_pred CccCHhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeEEE
Q 032860 1 MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~vf 80 (132)
.++++++.+|+++|+.++ .+||+|+||..+|.|.+..+.. ...+++|-..+|.+.|||.+|.|.+++.+. ..+.++|
T Consensus 177 ~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~~-~~e~sdL~s~vP~d~prY~ff~~~ht~eGD-~~es~~F 253 (342)
T KOG1747|consen 177 FPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTDT-CTEPSDLPSRVPRDGPRYHFFLFKHTHEGD-PLESIVF 253 (342)
T ss_pred ecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccCC-CCChHHhhhhcCCCCCceEEEecccccCCC-CceeEEE
Confidence 368999999999999986 9999999998889999988753 578999999999999999999999998754 5679999
Q ss_pred EEecCC-CCChhhhhHhHHhHHHHHhhcC---C--eeEEEEeCCCCCCCHHHHHhhhC
Q 032860 81 IAWSPS-TSRIRAKMLYATSKDRFRRELD---G--IHYEIQATDPTEMDLEELRNRAN 132 (132)
Q Consensus 81 I~w~P~-~a~vk~kMlyas~k~~l~~~l~---g--~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
||-||. +|+||+||+|||||..|...++ | +..+|+++|.+||+++.+.+.++
T Consensus 254 IYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~H 311 (342)
T KOG1747|consen 254 IYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELH 311 (342)
T ss_pred EEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhC
Confidence 999998 9999999999999998888776 4 45799999999999998887653
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.90 E-value=2e-23 Score=156.69 Aligned_cols=121 Identities=23% Similarity=0.424 Sum_probs=98.8
Q ss_pred ccCHhHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCC----CCCCHHHHHhc-CCCCCeeEEEEeeeeecCCCceee
Q 032860 2 GVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGG----PAESYEDFAAA-LPENDCRYAVYDFDYVTSENCQKS 76 (132)
Q Consensus 2 ~vs~e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~----~~~~~~~~~~~-l~~~~pry~~~~~~~~~~~~~~~~ 76 (132)
.-++++.+.|++-+.+ +.|.+.+.|++ +++.+..+.+ ...+|+.++.. |...+|||++|+.+. +..
T Consensus 8 ~A~e~l~~~l~~~~~~-k~R~ikIvI~n--Eql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds------~~~ 78 (342)
T KOG1747|consen 8 RATEALKKFLNEAKNG-KLRLIKIVIEN--EQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDS------KNA 78 (342)
T ss_pred chHHHHHHHHHhcccC-ceEEEEEEEec--ccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecC------CCc
Confidence 4467778888888877 48888888876 5788765543 24578888876 456899999999963 345
Q ss_pred eEEEEEecCCCCChhhhhHhHHhHHHHHhhcCC--eeEEEEeCCCCCCCHHHHHhhh
Q 032860 77 KIFFIAWSPSTSRIRAKMLYATSKDRFRRELDG--IHYEIQATDPTEMDLEELRNRA 131 (132)
Q Consensus 77 k~vfI~w~P~~a~vk~kMlyas~k~~l~~~l~g--~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
+|+||+|+||+||||+|||||||+++|++.++| +..+.++++++||+...+.+.+
T Consensus 79 ~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 79 EWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred cEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 999999999999999999999999999999986 4568999999999998887654
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.82 E-value=1e-19 Score=143.42 Aligned_cols=123 Identities=18% Similarity=0.340 Sum_probs=112.2
Q ss_pred HhHHHHHHHHHhCCc-eeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeeeeecCCCceeeeEEEEEe
Q 032860 5 DHSKNAFTELQRKKV-HRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAW 83 (132)
Q Consensus 5 ~e~~~a~~~l~~~~~-~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~~~~~~~~~~~k~vfI~w 83 (132)
.+|.++|+.+..+.+ +.|+||+++++...+.+..+| .+++++|++.+......|++++.. +.++++.|+|||+|
T Consensus 11 aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~--~~~~~e~~~df~~~kv~yg~~rv~---D~~s~l~KfvLI~W 85 (484)
T KOG3655|consen 11 AEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSG--EGGLEEFLGDFDSGKVMYGFCRVK---DPMSGLPKFVLINW 85 (484)
T ss_pred HHHHHHHHHhhccCCCceeEEEeecCCccceeeeccc--cccHHHHhhhcccCceeEEEEEec---CcccCCcceEEEEe
Confidence 579999999988764 889999999877777666555 579999999999999999999997 66778999999999
Q ss_pred cCCCCChhhhhHhHHhHHHHHhhcCCeeEEEEeCCCCCCCHHHHHhhhC
Q 032860 84 SPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 132 (132)
Q Consensus 84 ~P~~a~vk~kMlyas~k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|++++++-+|..+|++++.+++.|+|+|++|+|++.+||+.+.|+++|+
T Consensus 86 ~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 86 IGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred cCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875
No 11
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.82 E-value=33 Score=23.70 Aligned_cols=27 Identities=37% Similarity=0.768 Sum_probs=19.8
Q ss_pred eE-EEEeeeeecCCCceeeeEEEEEecCCCCChhh
Q 032860 59 RY-AVYDFDYVTSENCQKSKIFFIAWSPSTSRIRA 92 (132)
Q Consensus 59 ry-~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 92 (132)
|| .+|||. ..+|+|++.|+-|....|.
T Consensus 80 ryRLFFRy~-------s~skiIv~aWvNDe~tlR~ 107 (140)
T PF11663_consen 80 RYRLFFRYD-------SESKIIVYAWVNDEQTLRA 107 (140)
T ss_pred eeeEEEEec-------CccCEEEEEEeCCCcchhh
Confidence 66 456664 3569999999998877664
No 12
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=41.44 E-value=1e+02 Score=22.39 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=28.0
Q ss_pred eeEEEEEEe-CCCcEEEEeeCCCCCC---CHHHHHhcCCCCCeeEEEEeee
Q 032860 20 HRYVIFKID-EKKKEVVVEKTGGPAE---SYEDFAAALPENDCRYAVYDFD 66 (132)
Q Consensus 20 ~~~ii~~i~-~~~~~i~v~~~~~~~~---~~~~~~~~l~~~~pry~~~~~~ 66 (132)
+.+.-|+|- .+++.+..+-..++.. .+..-.+.|..+..||+=|+|.
T Consensus 86 IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFt 136 (240)
T KOG4037|consen 86 IDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFT 136 (240)
T ss_pred eeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeec
Confidence 557777774 3555554332222222 2333346688899999999885
No 13
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=37.55 E-value=54 Score=21.25 Aligned_cols=31 Identities=32% Similarity=0.653 Sum_probs=21.3
Q ss_pred CCChhhhhHhHHhHHHHHhhcC--Cee-EEEEeCCCCC
Q 032860 87 TSRIRAKMLYATSKDRFRRELD--GIH-YEIQATDPTE 121 (132)
Q Consensus 87 ~a~vk~kMlyas~k~~l~~~l~--g~~-~~i~~~d~~d 121 (132)
+..-|-||+| .+|+..|. |+| ..|.+..|++
T Consensus 66 s~v~RHRlVy----~~L~eEl~~~gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 66 SLVKRHRLVY----KALKEELAGTGVHALSIMAKTPSE 99 (100)
T ss_pred cHHHHHHHHH----HHHHHHhhccceeEEEeeccCCCC
Confidence 4556889999 45555554 466 4788877776
No 14
>PRK11470 hypothetical protein; Provisional
Probab=31.91 E-value=1.8e+02 Score=21.32 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=33.2
Q ss_pred ceeEEEEEEeCCCcEEEEeeCCC--CCCCHHHHHhcCCCCCeeEEEEeeee
Q 032860 19 VHRYVIFKIDEKKKEVVVEKTGG--PAESYEDFAAALPENDCRYAVYDFDY 67 (132)
Q Consensus 19 ~~~~ii~~i~~~~~~i~v~~~~~--~~~~~~~~~~~l~~~~pry~~~~~~~ 67 (132)
+|-.||+..+++ +-++++...+ +-.++++|++. ....+|+++|+..
T Consensus 36 sHvGII~~~~~~-~~~VlEA~~~~vr~TpLs~fi~r--~~~g~i~v~Rl~~ 83 (200)
T PRK11470 36 NHVGIIIGHNGE-DFLVAESRVPLSTVTTLSRFIKR--SANQRYAIKRLDA 83 (200)
T ss_pred ceEEEEEEEcCC-ceEEEEecCCceEEeEHHHHHhc--CcCceEEEEEecC
Confidence 366888888764 5677776653 23578888887 3478999999963
No 15
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=31.58 E-value=44 Score=23.58 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=22.0
Q ss_pred EEEEecCCCCChhhhhHhHHhHHHHHhhcCCe
Q 032860 79 FFIAWSPSTSRIRAKMLYATSKDRFRRELDGI 110 (132)
Q Consensus 79 vfI~w~P~~a~vk~kMlyas~k~~l~~~l~g~ 110 (132)
|||.|--+.-.--.+-=|.+||.++++.+.|.
T Consensus 112 Vfi~p~a~D~~kiy~~NY~ATKlAI~rAm~~~ 143 (160)
T TIGR03126 112 VFIHPEAKDDRKIYKYNYEATKLAIKRAMEGE 143 (160)
T ss_pred EEeccccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777643322223456899999999999873
No 16
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.03 E-value=1.5e+02 Score=18.96 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCe
Q 032860 6 HSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDC 58 (132)
Q Consensus 6 e~~~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~p 58 (132)
++...+.+|..=...+..+..++.+++.+.+.-.|. +.+|+++...+.+-.+
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~-~ldydei~~~iE~~Gg 74 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGT-NLDYDEIEEVIEELGG 74 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcC-CCCHHHHHHHHHHcCC
Confidence 334444455443458888889998888887766664 6899998877765444
No 17
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=29.87 E-value=63 Score=21.87 Aligned_cols=29 Identities=3% Similarity=0.221 Sum_probs=24.4
Q ss_pred ccCHhHHHHHHHHHhCCceeEEEEEEeCC
Q 032860 2 GVADHSKNAFTELQRKKVHRYVIFKIDEK 30 (132)
Q Consensus 2 ~vs~e~~~a~~~l~~~~~~~~ii~~i~~~ 30 (132)
.+++.+++.|++-+..++-+|+.|.+.++
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~~ 119 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRSE 119 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCCh
Confidence 47889999999998887889999988653
No 18
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=26.29 E-value=3.3e+02 Score=21.49 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=40.0
Q ss_pred HHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCeeEEEEeee
Q 032860 14 LQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFD 66 (132)
Q Consensus 14 l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~~~~~ 66 (132)
++.|+.....|++++.++..|.|....-...+|+++.+.++..+...+..+.-
T Consensus 64 vkvGd~v~vkVl~VD~ekg~IdLS~K~v~~~pw~~~~e~~~~g~~v~~~V~~i 116 (319)
T PTZ00248 64 IRVGRHEVVVVLRVDKEKGYIDLSKKRVSPEDIEACEEKFSKSKKVHSIMRHI 116 (319)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEEEeeecccchHHHHHHhCcCCCEEEEEEEEc
Confidence 46777788999999988888888654333458999999998877766666553
No 19
>PRK04968 SecY interacting protein Syd; Provisional
Probab=25.74 E-value=1.5e+02 Score=21.43 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=23.3
Q ss_pred EEEEEEeCCCcEEEEeeCCCC-----CCCHHHHHhcCCC
Q 032860 22 YVIFKIDEKKKEVVVEKTGGP-----AESYEDFAAALPE 55 (132)
Q Consensus 22 ~ii~~i~~~~~~i~v~~~~~~-----~~~~~~~~~~l~~ 55 (132)
--++.+++.+.+|.++.-|.. ..++.+|++.|.+
T Consensus 139 ~~~isv~N~sGeV~lE~~G~~~r~vLA~sL~eFL~~L~P 177 (181)
T PRK04968 139 DEVISVCNLSGEVILETLGTRKRTVLAPSLAEFLNQLEP 177 (181)
T ss_pred CeEEEEECCCCeEEEEeCCCCcceehhhCHHHHHHhCCc
Confidence 345566677778888776642 2578899988864
No 20
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=25.34 E-value=73 Score=20.52 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHHhCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHHhcCCCCCe
Q 032860 9 NAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDC 58 (132)
Q Consensus 9 ~a~~~l~~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~p 58 (132)
.++.++.--.+.+..+..++.+++.+.+.=.|. +.+|+++.+.+..-.+
T Consensus 24 ~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~-~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 24 KALSELEGVDGVNITVVEVDVETENLKITIEGD-DIDFDEIKEAIEELGG 72 (95)
T ss_dssp HHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEES-SE-HHHHHHHHHHTT-
T ss_pred HHHHhCCCcceEEEEEEEeeccccEEEEEEEeC-CCCHHHHHHHHHHcCC
Confidence 333333333347788888899888888766664 6899999887765444
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=23.54 E-value=1.8e+02 Score=25.98 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=37.3
Q ss_pred eeEEEEeeeeecCCCceeeeEEEEEecCCCCChhhhhHhHHhHHHHHhhcC
Q 032860 58 CRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELD 108 (132)
Q Consensus 58 pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~kMlyas~k~~l~~~l~ 108 (132)
-||++..-... .+..-.|-..||+++.|..-.+|--|-+.-.|++.|+
T Consensus 528 DcYiVLKT~~d---dsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 528 DCYIVLKTTRD---DSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred cEEEEEEeecc---cccccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 46999876543 2334567788999999999999988888888888774
No 22
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=23.48 E-value=64 Score=19.16 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=24.6
Q ss_pred EEEEecCCC-CChhhhhHhHHhHHHHHhhc
Q 032860 79 FFIAWSPST-SRIRAKMLYATSKDRFRREL 107 (132)
Q Consensus 79 vfI~w~P~~-a~vk~kMlyas~k~~l~~~l 107 (132)
+.|.|.+.+ ..++...-|+-+++.+-+.+
T Consensus 31 L~V~y~~~g~~~~~rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 31 LVVRYLQSGPQDIQRSFPYSLSREDVEAAI 60 (63)
T ss_pred EEEEEccCCCcccEEeccCcCCHHHHHHHH
Confidence 668899888 77888899999999988764
No 23
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=22.87 E-value=47 Score=22.15 Aligned_cols=33 Identities=12% Similarity=0.398 Sum_probs=16.9
Q ss_pred CHHHHHhcC---C-CCCeeEEEEeeeeecCCCceeeeEEEEEecCC
Q 032860 45 SYEDFAAAL---P-ENDCRYAVYDFDYVTSENCQKSKIFFIAWSPS 86 (132)
Q Consensus 45 ~~~~~~~~l---~-~~~pry~~~~~~~~~~~~~~~~k~vfI~w~P~ 86 (132)
+|++|.+.+ . .+.+.|++|-=... ..| -+|||+
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d-~~g--------~sWCPD 40 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKD-ETG--------QSWCPD 40 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B--TTS---------BSSHH
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCC-CCC--------CcccHH
Confidence 466555444 3 45788888754322 112 369996
No 24
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=22.84 E-value=1.3e+02 Score=19.89 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=29.0
Q ss_pred eeeEEEEEecCCCCChhhhhHhHHhHHHHHhhcC
Q 032860 75 KSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELD 108 (132)
Q Consensus 75 ~~k~vfI~w~P~~a~vk~kMlyas~k~~l~~~l~ 108 (132)
...++++.-+....+......|+++|.++....+
T Consensus 127 ~g~iv~~sS~~~~~~~~~~~~Y~askaal~~~~~ 160 (167)
T PF00106_consen 127 GGKIVNISSIAGVRGSPGMSAYSASKAALRGLTQ 160 (167)
T ss_dssp TEEEEEEEEGGGTSSSTTBHHHHHHHHHHHHHHH
T ss_pred ccceEEecchhhccCCCCChhHHHHHHHHHHHHH
Confidence 5688999998888888999999999999876543
No 25
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=22.53 E-value=1.3e+02 Score=21.58 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCCCCeeEEEEeeeeecCCCceeeeEEEEEecCCCCChhh--hhHhHHhHHHHHhhc
Q 032860 53 LPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRA--KMLYATSKDRFRREL 107 (132)
Q Consensus 53 l~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~--kMlyas~k~~l~~~l 107 (132)
+|..+.|+.|+|+. ..++++=+||--+..--. ...||....+..+.|
T Consensus 44 ~pS~~~R~~v~Dl~--------~~~~l~~~~VaHG~gsg~~~a~~FSN~~~S~~SSl 92 (176)
T PF13645_consen 44 KPSGEKRFFVIDLK--------KGKLLYNTLVAHGRGSGNLYATSFSNRPGSHQSSL 92 (176)
T ss_pred CCCCCCeEEEEECC--------CCEEEEeeeeecccCCCCCccccCcCCCCCCCcCc
Confidence 67889999999995 457888888876554333 233443334444444
No 26
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=21.81 E-value=1.3e+02 Score=20.42 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=33.3
Q ss_pred HHhCCceeEEEEEEeCCCcEEEEeeCCCC-CCCHHHHHhcCCCCCeeE
Q 032860 14 LQRKKVHRYVIFKIDEKKKEVVVEKTGGP-AESYEDFAAALPENDCRY 60 (132)
Q Consensus 14 l~~~~~~~~ii~~i~~~~~~i~v~~~~~~-~~~~~~~~~~l~~~~pry 60 (132)
+..++...|+.+.++.++..|+--..|++ ..++..|.+.|+.-++.+
T Consensus 14 Vg~K~n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~ 61 (131)
T PF03400_consen 14 VGNKKNKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGF 61 (131)
T ss_pred hccCCCceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceE
Confidence 34444578999999988888875555653 457888888887665543
No 27
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=20.09 E-value=2.2e+02 Score=18.56 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=11.6
Q ss_pred CHhHHHHHHHHHhCC--ceeEEEEEEeC
Q 032860 4 ADHSKNAFTELQRKK--VHRYVIFKIDE 29 (132)
Q Consensus 4 s~e~~~a~~~l~~~~--~~~~ii~~i~~ 29 (132)
++++.+...++-..+ +.||-|+.|+.
T Consensus 75 ~Ee~vekie~~~~Ekla~eryTIi~ipI 102 (110)
T COG4075 75 KEEKVEKIEELLKEKLANERYTIIEIPI 102 (110)
T ss_pred CHHHHHHHHHHHHHHhcCCceEEEEeee
Confidence 444444444442221 34555555554
Done!