BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032861
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana
GN=MUB3 PE=1 SV=1
Length = 118
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 83/100 (83%), Positives = 94/100 (94%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
MP+EE IDIKFRLYDGSDIGPFRYS+ASTVD LKQR+VSDWPKGKT+VPK + E+KLISS
Sbjct: 1 MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKT 100
GKILENNKTVGQCK P+G++ GGVI+MHVVVQPSLAK+KT
Sbjct: 61 GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKT 100
>sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis
thaliana GN=MUB4 PE=1 SV=1
Length = 120
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 82/99 (82%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
MP+E+L+++KFRLYDGSD+GPF+YS +TV MLK+RIVS+WPK K IVPK+ ++IKLI++
Sbjct: 1 MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINA 60
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTK 99
GKILEN KTV QCK P+ ++P VI MHVVVQ S K +
Sbjct: 61 GKILENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKAR 99
>sp|Q7XRU4|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp.
japonica GN=MUB4 PE=2 SV=2
Length = 135
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
Query: 10 KFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68
KFRL+DGSDIGP R ++ A+TV LK R+V+DWPK KTIVPK ++KLIS GKILEN+K
Sbjct: 26 KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85
Query: 69 TVGQCKIPYGEVPGGVIIMHVVVQPSLAKTK 99
+ QC+ P+G++P I MHVVVQPS AK+K
Sbjct: 86 NIAQCRAPFGDLPSTAITMHVVVQPSSAKSK 116
>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp.
japonica GN=MUB3 PE=3 SV=1
Length = 119
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 85/129 (65%), Gaps = 20/129 (15%)
Query: 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
+E I++KFRL+DG+DIGP +Y ++TV LK+ I++ WP+ K I PK V ++KLI++G+I
Sbjct: 5 KEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRI 64
Query: 64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTVHFGVMLELDWTNTNPDIHVTQQ 123
LENN+T+ + ++P GEVPGGVI MHVVV+P PD + +Q
Sbjct: 65 LENNRTLAESRVPVGEVPGGVITMHVVVRPP--------------------QPDKNSEKQ 104
Query: 124 VANFRKEDR 132
+AN K++R
Sbjct: 105 LANSPKQNR 113
>sp|Q9SH14|MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana
GN=MUB5 PE=1 SV=1
Length = 120
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60
M DE+LI++KFRL DG+DIGP +YS TV LK++I++ WPK K PK + E+KLI+
Sbjct: 1 MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60
Query: 61 GKILENNKTVGQCK--IPYGEVPGGVIIMHVVVQPSLAKTK 99
GKILENNKT+ + + I GE+PG V MHVV++P L + K
Sbjct: 61 GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKK 101
>sp|Q8GWJ6|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis
thaliana GN=MUB6 PE=1 SV=1
Length = 119
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 74/96 (77%), Gaps = 1/96 (1%)
Query: 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62
+E+ I++KFRL DG+DIGP +Y+ + TV LK++++S WPK K PK V ++KLI++GK
Sbjct: 4 EEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGK 63
Query: 63 ILENNKTVGQCKIPYGEVPGGVIIMHVVVQ-PSLAK 97
ILENN+T+ + ++P E+PG +I MH+V++ P+L K
Sbjct: 64 ILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDK 99
>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis
thaliana GN=MUB2 PE=1 SV=1
Length = 124
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 64/89 (71%)
Query: 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
++ ++IKFRL DGSDIGP + A+TV LK+ +V+ WP+ K PK V ++KLIS+G+I
Sbjct: 5 KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64
Query: 64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92
LENNKTVG C+ P G G V MHV++Q
Sbjct: 65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQ 93
>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp.
japonica GN=MUB1 PE=3 SV=1
Length = 119
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Query: 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63
+E +IKFRL DG+DIGP RY +ASTV LK+ IV+ WPK K P+ V ++KLI++GKI
Sbjct: 6 QEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKI 65
Query: 64 LENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92
LENNKT+ +CK P + G+ MHVVV+
Sbjct: 66 LENNKTLSECKSPICDF-SGLTTMHVVVR 93
>sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis
thaliana GN=MUB1 PE=1 SV=1
Length = 117
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 61/86 (70%)
Query: 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66
++IKFRL DGSDIGP + A+TV LK+ ++S+WP+ K PK V E+KLIS+GK+LEN
Sbjct: 8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67
Query: 67 NKTVGQCKIPYGEVPGGVIIMHVVVQ 92
+KTV + P + G V MHV++Q
Sbjct: 68 SKTVKDYRSPVSNLAGAVTTMHVIIQ 93
>sp|Q67UI2|MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp.
japonica GN=MUB2 PE=2 SV=1
Length = 126
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 64/90 (71%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64
E ++++FRL DGSDIGP + A+TV LK+ +++ WP+GK I P+ V ++ +I++G++L
Sbjct: 12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71
Query: 65 ENNKTVGQCKIPYGEVPGGVIIMHVVVQPS 94
ENN+T+ + + E P G I MHVVV+ S
Sbjct: 72 ENNRTLAESRNLAAESPEGPITMHVVVRRS 101
>sp|Q5BJT2|UBL3_RAT Ubiquitin-like protein 3 OS=Rattus norvegicus GN=Ubl3 PE=2 SV=1
Length = 117
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP----KGKTIVPKAVTEIKLISS 60
++I+++ L G F +S + + + + +WP + + P ++LI
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNI---LRLIYQ 63
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSL 95
G+ L N T+G K+P+G+ +MH+V + +L
Sbjct: 64 GRFLHGNVTLGALKLPFGK----TTVMHLVARETL 94
>sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 OS=Mus musculus GN=Ubl3 PE=1 SV=1
Length = 117
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP----KGKTIVPKAVTEIKLISS 60
++I+++ L G F +S + + + + +WP + + P ++LI
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNI---LRLIYQ 63
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSL 95
G+ L N T+G K+P+G+ +MH+V + +L
Sbjct: 64 GRFLHGNVTLGALKLPFGK----TTVMHLVARETL 94
>sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 OS=Homo sapiens GN=UBL3 PE=1 SV=1
Length = 117
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP----KGKTIVPKAVTEIKLISS 60
++I+++ L G F +S + + + + +WP + + P ++LI
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNI---LRLIYQ 63
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSL 95
G+ L N T+G K+P+G+ +MH+V + +L
Sbjct: 64 GRFLHGNVTLGALKLPFGK----TTVMHLVARETL 94
>sp|Q2TA46|UBL3_BOVIN Ubiquitin-like protein 3 OS=Bos taurus GN=UBL3 PE=3 SV=1
Length = 117
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP----KGKTIVPKAVTEIKLISS 60
++I+++ L G F +S + + + + +WP + + P ++LI
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNI---LRLIYQ 63
Query: 61 GKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSL 95
G+ L N T+G K+P+G+ +MH+V + +L
Sbjct: 64 GRFLHGNVTLGALKLPFGK----TTVMHLVARETL 94
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 53 TEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTK 99
++IKLI SGK+L+++KTV +C + G+ ++ +V Q KTK
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQ-----VVFMVSQKKSTKTK 81
>sp|A8ZUR6|SYH_DESOH Histidine--tRNA ligase OS=Desulfococcus oleovorans (strain DSM 6200
/ Hxd3) GN=hisS PE=3 SV=1
Length = 423
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 52 VTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87
V + ++ + IL N KT Q +IP G+VPG +I M
Sbjct: 381 VGDAEMETGSLILRNMKTKAQQEIPLGDVPGALITM 416
>sp|Q58689|Y1293_METJA Uncharacterized protein MJ1293 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1293 PE=4 SV=1
Length = 231
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 54 EIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88
+I+LI +GK NK +G KIP EVPG I++
Sbjct: 182 KIELIKTGK----NKYLGLFKIPENEVPGQYFIIY 212
>sp|Q83GX1|PUR7_TROWT Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Tropheryma whipplei (strain Twist) GN=purC PE=3 SV=1
Length = 305
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPK---GKTIVPKAVTEIKL 57
+ DE L R +D + G F +D ++ V DW K GK I P+ +T ++L
Sbjct: 225 LADELLTADSARYWDINSWGQFDLPIERRLDSFDKQAVRDWVKCNSGKNITPQNITPLRL 284
>sp|Q83IB9|PUR7_TROW8 Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Tropheryma whipplei (strain TW08/27) GN=purC PE=3
SV=1
Length = 305
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPK---GKTIVPKAVTEIKL 57
+ DE L R +D + G F +D ++ V DW K GK I P+ +T ++L
Sbjct: 225 LADELLTADSARYWDINSWGQFDLPIERRLDSFDKQAVRDWVKCNSGKNITPQNITPLRL 284
>sp|B3E422|ERA_GEOLS GTPase Era OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 /
SZ) GN=era PE=3 SV=1
Length = 296
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV-TEI--KLISSGKILENNK 68
RLYD +I P S S ++ L + P+G+ + P + T++ K I + I E
Sbjct: 142 RLYDFPEIIPISAQSGSNIERLVDLVREHLPEGEALFPDDILTDLPEKFIVAELIREKVF 201
Query: 69 TVGQCKIPYG 78
+ ++PYG
Sbjct: 202 RLTNREVPYG 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,939,980
Number of Sequences: 539616
Number of extensions: 2012316
Number of successful extensions: 4407
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4392
Number of HSP's gapped (non-prelim): 24
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)