Query 032861
Match_columns 132
No_of_seqs 127 out of 896
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01814 NTGP5 Ubiquitin-like N 100.0 1E-29 2.2E-34 184.9 8.8 100 3-102 1-100 (113)
2 PF13881 Rad60-SLD_2: Ubiquiti 99.9 1.1E-26 2.3E-31 168.5 11.6 99 5-103 1-99 (111)
3 cd01807 GDX_N ubiquitin-like d 99.7 6.1E-18 1.3E-22 112.7 8.2 73 8-94 2-74 (74)
4 cd01790 Herp_N Homocysteine-re 99.7 4.7E-18 1E-22 117.0 7.4 75 6-91 1-78 (79)
5 cd01793 Fubi Fubi ubiquitin-li 99.7 9.8E-18 2.1E-22 111.9 7.8 73 8-96 2-74 (74)
6 cd01794 DC_UbP_C dendritic cel 99.7 1.6E-17 3.4E-22 111.0 7.1 69 9-91 1-69 (70)
7 cd01797 NIRF_N amino-terminal 99.7 4.5E-17 9.8E-22 110.8 8.1 75 8-95 2-77 (78)
8 cd01810 ISG15_repeat2 ISG15 ub 99.7 5.4E-17 1.2E-21 108.3 7.5 74 9-96 1-74 (74)
9 cd01798 parkin_N amino-termina 99.7 5.8E-17 1.3E-21 106.8 7.2 70 9-92 1-70 (70)
10 cd01802 AN1_N ubiquitin-like d 99.7 9.6E-17 2.1E-21 114.7 8.6 78 5-96 26-103 (103)
11 PTZ00044 ubiquitin; Provisiona 99.7 1.3E-16 2.8E-21 106.0 8.3 75 8-96 2-76 (76)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.9E-16 4.2E-21 106.7 7.6 70 7-90 2-71 (73)
13 cd01808 hPLIC_N Ubiquitin-like 99.7 3.4E-16 7.4E-21 103.5 7.6 71 7-92 1-71 (71)
14 cd01806 Nedd8 Nebb8-like ubiq 99.7 6E-16 1.3E-20 101.9 8.3 75 8-96 2-76 (76)
15 cd01804 midnolin_N Ubiquitin-l 99.6 8.1E-16 1.8E-20 104.2 8.3 75 7-96 2-76 (78)
16 cd01800 SF3a120_C Ubiquitin-li 99.6 6.9E-16 1.5E-20 103.7 7.3 71 15-99 6-76 (76)
17 cd01803 Ubiquitin Ubiquitin. U 99.6 1.1E-15 2.4E-20 100.7 8.2 75 8-96 2-76 (76)
18 PF00240 ubiquitin: Ubiquitin 99.6 1.8E-15 4E-20 98.4 9.0 68 12-93 1-68 (69)
19 cd01809 Scythe_N Ubiquitin-lik 99.6 1.7E-15 3.6E-20 98.9 7.9 72 7-92 1-72 (72)
20 cd01805 RAD23_N Ubiquitin-like 99.6 3.1E-15 6.8E-20 99.4 8.3 72 8-93 2-75 (77)
21 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.1E-15 4.7E-20 102.2 7.5 75 7-95 3-79 (80)
22 cd01796 DDI1_N DNA damage indu 99.6 2.8E-15 6.1E-20 99.8 6.6 67 9-89 1-69 (71)
23 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 5E-15 1.1E-19 101.1 5.2 56 26-91 19-74 (75)
24 KOG0005 Ubiquitin-like protein 99.6 4.5E-15 9.8E-20 98.1 4.5 69 8-90 2-70 (70)
25 cd01812 BAG1_N Ubiquitin-like 99.5 6.1E-14 1.3E-18 91.5 7.4 69 7-90 1-69 (71)
26 KOG0004 Ubiquitin/40S ribosoma 99.5 1.6E-14 3.4E-19 110.2 4.3 80 9-102 3-82 (156)
27 cd01763 Sumo Small ubiquitin-r 99.5 6.7E-13 1.5E-17 91.5 9.4 79 4-96 9-87 (87)
28 KOG0010 Ubiquitin-like protein 99.4 1.4E-13 3.1E-18 120.2 7.1 78 6-98 15-92 (493)
29 KOG0003 Ubiquitin/60s ribosoma 99.4 1.9E-14 4.2E-19 104.8 0.3 74 9-96 3-76 (128)
30 cd01813 UBP_N UBP ubiquitin pr 99.4 1.2E-12 2.6E-17 88.2 6.5 68 8-90 2-72 (74)
31 TIGR00601 rad23 UV excision re 99.4 1.4E-12 3E-17 111.5 8.4 67 8-79 2-68 (378)
32 cd01799 Hoil1_N Ubiquitin-like 99.3 4.1E-12 8.9E-17 86.0 7.3 69 7-90 3-73 (75)
33 smart00213 UBQ Ubiquitin homol 99.3 3.7E-12 8.1E-17 80.4 6.6 63 7-78 1-63 (64)
34 cd01769 UBL Ubiquitin-like dom 99.2 7.2E-11 1.6E-15 75.3 6.9 67 11-91 2-68 (69)
35 KOG0011 Nucleotide excision re 99.1 1.6E-10 3.4E-15 97.3 6.8 67 8-80 2-68 (340)
36 cd01795 USP48_C USP ubiquitin- 99.0 1.5E-09 3.3E-14 78.1 6.2 68 12-94 11-79 (107)
37 KOG4248 Ubiquitin-like protein 99.0 1.1E-09 2.4E-14 102.5 6.8 77 7-98 3-79 (1143)
38 PF11976 Rad60-SLD: Ubiquitin- 98.9 6E-09 1.3E-13 68.3 7.9 71 7-91 1-72 (72)
39 cd01789 Alp11_N Ubiquitin-like 98.9 1E-08 2.2E-13 70.4 8.5 71 8-91 3-80 (84)
40 KOG0001 Ubiquitin and ubiquiti 98.7 1.8E-07 3.9E-12 58.5 8.8 71 10-94 3-73 (75)
41 cd01801 Tsc13_N Ubiquitin-like 98.7 3.7E-08 8.1E-13 66.2 5.5 60 18-89 12-74 (77)
42 PLN02560 enoyl-CoA reductase 98.7 7.2E-08 1.6E-12 80.6 7.4 65 8-78 2-75 (308)
43 cd01788 ElonginB Ubiquitin-lik 98.5 4.7E-07 1E-11 66.6 7.6 79 6-93 2-81 (119)
44 PF14560 Ubiquitin_2: Ubiquiti 98.4 1.8E-06 3.9E-11 59.0 8.2 71 7-90 2-81 (87)
45 PF10302 DUF2407: DUF2407 ubiq 98.3 1.6E-06 3.5E-11 61.6 6.0 60 9-74 3-65 (97)
46 cd00196 UBQ Ubiquitin-like pro 98.2 8E-06 1.7E-10 47.8 6.7 65 12-90 3-67 (69)
47 KOG0006 E3 ubiquitin-protein l 98.0 8.9E-06 1.9E-10 69.3 5.7 74 7-93 3-77 (446)
48 PF11543 UN_NPL4: Nuclear pore 97.8 3.6E-05 7.8E-10 52.8 4.9 65 6-79 4-73 (80)
49 PF00789 UBX: UBX domain; Int 97.8 0.00034 7.3E-09 46.8 9.6 73 4-89 4-80 (82)
50 cd01770 p47_UBX p47-like ubiqu 97.4 0.0014 3.1E-08 44.6 7.9 68 4-78 2-72 (79)
51 KOG4495 RNA polymerase II tran 97.3 0.00059 1.3E-08 49.2 5.7 75 6-89 2-79 (110)
52 cd01767 UBX UBX (ubiquitin reg 97.0 0.0061 1.3E-07 40.5 7.7 64 6-78 2-70 (77)
53 KOG4583 Membrane-associated ER 97.0 0.00028 6.1E-09 60.4 1.3 81 4-93 7-88 (391)
54 cd01774 Faf1_like2_UBX Faf1 ik 97.0 0.0075 1.6E-07 41.7 8.1 65 5-78 3-77 (85)
55 cd01811 OASL_repeat1 2'-5' oli 97.0 0.0071 1.5E-07 41.7 7.7 63 7-78 1-68 (80)
56 cd01772 SAKS1_UBX SAKS1-like U 96.7 0.02 4.3E-07 38.7 8.1 65 5-78 3-72 (79)
57 smart00166 UBX Domain present 96.6 0.022 4.9E-07 38.1 8.3 67 4-78 2-73 (80)
58 KOG1872 Ubiquitin-specific pro 96.3 0.0095 2.1E-07 52.8 6.1 67 14-93 9-76 (473)
59 PF08817 YukD: WXG100 protein 96.2 0.017 3.8E-07 38.7 5.8 72 6-79 2-74 (79)
60 KOG1769 Ubiquitin-like protein 96.0 0.082 1.8E-06 38.0 8.7 78 5-96 19-96 (99)
61 cd01771 Faf1_UBX Faf1 UBX doma 95.8 0.12 2.5E-06 35.3 8.3 66 3-78 1-72 (80)
62 PF13019 Telomere_Sde2: Telome 95.5 0.11 2.4E-06 40.3 8.1 82 7-97 1-89 (162)
63 PF15044 CLU_N: Mitochondrial 94.7 0.082 1.8E-06 35.8 4.8 59 24-94 1-60 (76)
64 COG5417 Uncharacterized small 94.3 0.39 8.4E-06 33.2 7.3 72 5-79 5-76 (81)
65 KOG3493 Ubiquitin-like protein 94.1 0.017 3.7E-07 39.0 0.4 55 16-78 11-65 (73)
66 cd01773 Faf1_like1_UBX Faf1 ik 93.6 0.84 1.8E-05 31.6 8.1 65 4-78 3-73 (82)
67 COG5227 SMT3 Ubiquitin-like pr 93.3 0.56 1.2E-05 33.6 7.0 66 6-79 24-89 (103)
68 KOG0013 Uncharacterized conser 92.8 0.14 3E-06 41.6 3.7 65 6-78 145-210 (231)
69 KOG2086 Protein tyrosine phosp 89.5 0.95 2.1E-05 39.4 5.8 68 4-78 303-373 (380)
70 PF10209 DUF2340: Uncharacteri 86.8 2.1 4.6E-05 31.8 5.5 56 23-78 21-100 (122)
71 KOG3206 Alpha-tubulin folding 85.7 2.3 5E-05 34.6 5.6 58 22-92 17-81 (234)
72 PF11470 TUG-UBL1: GLUT4 regul 84.7 4.8 0.0001 26.5 5.9 57 14-78 4-60 (65)
73 cd00754 MoaD Ubiquitin domain 84.5 6.9 0.00015 25.2 6.6 56 16-79 14-69 (80)
74 PF09379 FERM_N: FERM N-termin 84.2 8.9 0.00019 24.7 8.1 71 11-92 1-77 (80)
75 TIGR01687 moaD_arch MoaD famil 82.5 12 0.00026 24.9 7.5 58 16-79 14-77 (88)
76 PF08337 Plexin_cytopl: Plexin 79.9 11 0.00025 34.3 8.2 80 7-94 190-291 (539)
77 smart00666 PB1 PB1 domain. Pho 76.6 9.2 0.0002 24.8 5.2 45 7-60 2-46 (81)
78 PF02597 ThiS: ThiS family; I 74.0 14 0.00031 23.4 5.5 52 21-79 15-66 (77)
79 TIGR01682 moaD molybdopterin c 72.6 24 0.00052 23.1 6.8 56 15-79 13-69 (80)
80 KOG1639 Steroid reductase requ 72.0 6.7 0.00015 32.9 4.3 65 22-97 17-82 (297)
81 cd06407 PB1_NLP A PB1 domain i 71.0 14 0.00029 25.3 5.0 33 10-42 2-34 (82)
82 PF00564 PB1: PB1 domain; Int 70.0 15 0.00033 23.7 5.0 46 7-61 2-48 (84)
83 smart00295 B41 Band 4.1 homolo 69.9 12 0.00026 27.8 5.0 35 6-41 3-37 (207)
84 cd06409 PB1_MUG70 The MUG70 pr 69.0 16 0.00034 25.5 5.0 33 9-42 3-35 (86)
85 PRK08364 sulfur carrier protei 68.4 21 0.00045 23.2 5.3 55 9-79 5-59 (70)
86 PF12754 Blt1: Cell-cycle cont 66.8 1.8 4E-05 36.7 0.0 48 27-76 103-160 (309)
87 PF14453 ThiS-like: ThiS-like 66.0 12 0.00025 24.3 3.6 41 21-79 9-49 (57)
88 smart00144 PI3K_rbd PI3-kinase 66.0 38 0.00082 23.9 6.7 68 6-74 17-87 (108)
89 PF08783 DWNN: DWNN domain; I 64.9 16 0.00036 24.7 4.4 31 10-40 2-33 (74)
90 PLN02799 Molybdopterin synthas 63.9 22 0.00047 23.4 4.8 56 15-79 16-71 (82)
91 cd01787 GRB7_RA RA (RAS-associ 63.2 11 0.00024 26.3 3.4 60 7-74 3-69 (85)
92 PF06234 TmoB: Toluene-4-monoo 61.2 54 0.0012 22.9 7.3 72 6-78 3-76 (85)
93 PF11069 DUF2870: Protein of u 60.4 14 0.0003 26.6 3.5 42 56-100 3-44 (98)
94 cd06396 PB1_NBR1 The PB1 domai 59.6 21 0.00047 24.6 4.2 33 10-42 2-36 (81)
95 PF10790 DUF2604: Protein of U 58.1 10 0.00022 25.7 2.4 63 22-94 10-73 (76)
96 cd05992 PB1 The PB1 domain is 56.9 26 0.00055 22.5 4.2 33 8-42 2-35 (81)
97 PF02505 MCR_D: Methyl-coenzym 56.6 32 0.0007 26.5 5.2 57 6-78 67-124 (153)
98 PF02824 TGS: TGS domain; Int 55.2 27 0.00059 22.0 4.0 30 9-41 1-30 (60)
99 cd06406 PB1_P67 A PB1 domain i 53.9 41 0.00088 23.2 4.9 36 20-62 13-48 (80)
100 KOG0012 DNA damage inducible p 53.1 42 0.00091 29.4 5.9 55 18-79 13-69 (380)
101 cd06408 PB1_NoxR The PB1 domai 52.8 63 0.0014 22.5 5.7 34 9-42 3-36 (86)
102 cd01760 RBD Ubiquitin-like dom 50.2 49 0.0011 22.1 4.7 31 9-40 2-32 (72)
103 cd00565 ThiS ThiaminS ubiquiti 48.4 34 0.00074 21.6 3.6 47 21-79 8-54 (65)
104 COG5100 NPL4 Nuclear pore prot 47.2 53 0.0011 29.6 5.7 65 9-78 3-71 (571)
105 PRK06437 hypothetical protein; 47.1 76 0.0017 20.4 5.8 44 20-79 13-56 (67)
106 PF11816 DUF3337: Domain of un 45.6 27 0.00059 29.3 3.6 53 22-74 252-312 (331)
107 TIGR03260 met_CoM_red_D methyl 45.5 69 0.0015 24.7 5.4 53 6-73 66-118 (150)
108 KOG4250 TANK binding protein k 44.6 65 0.0014 30.6 6.1 93 10-120 318-410 (732)
109 smart00455 RBD Raf-like Ras-bi 42.9 77 0.0017 20.8 4.8 47 9-65 2-52 (70)
110 PF11620 GABP-alpha: GA-bindin 42.6 1.1E+02 0.0023 21.7 5.6 65 21-96 6-70 (88)
111 COG4055 McrD Methyl coenzyme M 41.7 78 0.0017 24.6 5.2 56 10-79 77-133 (165)
112 KOG4147 Uncharacterized conser 39.0 1.1E+02 0.0024 22.7 5.4 57 22-78 27-105 (127)
113 KOG2507 Ubiquitin regulatory p 38.6 33 0.00071 30.9 3.1 68 5-78 313-383 (506)
114 TIGR02958 sec_mycoba_snm4 secr 37.3 1.7E+02 0.0037 25.8 7.4 76 7-92 3-80 (452)
115 PF02192 PI3K_p85B: PI3-kinase 37.0 34 0.00073 23.3 2.4 20 21-40 3-22 (78)
116 KOG3439 Protein conjugation fa 35.3 1.6E+02 0.0034 21.8 5.7 53 5-64 29-84 (116)
117 PF14836 Ubiquitin_3: Ubiquiti 34.3 1.6E+02 0.0035 20.5 7.9 52 19-78 15-72 (88)
118 PF14533 USP7_C2: Ubiquitin-sp 34.1 1E+02 0.0023 24.1 5.1 50 20-73 36-90 (213)
119 PF14732 UAE_UbL: Ubiquitin/SU 33.9 1E+02 0.0022 21.0 4.4 49 27-78 8-61 (87)
120 KOG1364 Predicted ubiquitin re 33.4 50 0.0011 28.7 3.3 64 8-78 279-347 (356)
121 KOG0007 Splicing factor 3a, su 33.0 20 0.00044 30.3 0.9 43 21-70 296-339 (341)
122 KOG3391 Transcriptional co-rep 32.8 40 0.00087 25.8 2.4 21 60-80 109-130 (151)
123 PF14941 OAF: Transcriptional 32.7 74 0.0016 26.2 4.0 57 2-65 23-79 (240)
124 cd01817 RGS12_RBD Ubiquitin do 31.0 1.7E+02 0.0037 19.8 5.0 30 10-40 3-32 (73)
125 PF08154 NLE: NLE (NUC135) dom 30.4 1.5E+02 0.0033 18.9 6.0 55 6-65 1-58 (65)
126 cd06404 PB1_aPKC PB1 domain is 30.3 78 0.0017 22.0 3.3 34 9-42 1-34 (83)
127 PF00794 PI3K_rbd: PI3-kinase 29.5 1.9E+02 0.0041 19.8 5.5 70 4-74 14-85 (106)
128 cd01777 SNX27_RA Ubiquitin dom 28.8 1.3E+02 0.0028 21.1 4.2 35 6-41 1-35 (87)
129 smart00143 PI3K_p85B PI3-kinas 28.4 57 0.0012 22.3 2.4 20 21-40 3-22 (78)
130 KOG4261 Talin [Cytoskeleton] 27.1 97 0.0021 30.1 4.3 69 5-79 2-76 (1003)
131 KOG2689 Predicted ubiquitin re 26.9 93 0.002 26.4 3.8 36 5-41 209-244 (290)
132 cd06411 PB1_p51 The PB1 domain 26.6 1.3E+02 0.0028 20.7 3.9 34 21-61 10-43 (78)
133 PF00788 RA: Ras association ( 25.2 1.7E+02 0.0036 18.8 4.2 47 7-58 3-52 (93)
134 PF06200 tify: tify domain; I 21.7 96 0.0021 18.2 2.2 14 51-64 4-17 (36)
135 TIGR00673 cynS cyanate hydrata 20.6 1.5E+02 0.0032 22.8 3.5 33 32-65 102-146 (150)
136 TIGR01683 thiS thiamine biosyn 20.4 2.3E+02 0.005 17.6 5.4 47 21-79 7-53 (64)
137 KOG4146 Ubiquitin-like protein 20.2 3.4E+02 0.0074 19.5 5.8 36 5-40 3-48 (101)
No 1
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.96 E-value=1e-29 Score=184.86 Aligned_cols=100 Identities=67% Similarity=1.094 Sum_probs=95.0
Q ss_pred CcceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 032861 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~ 82 (132)
+++.|+|+||+.+|+||+++.|++++||++||++|++.||++||++|..+++|||||+||+|+|+.||++|++..|++++
T Consensus 1 ~~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~ 80 (113)
T cd01814 1 VEEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAG 80 (113)
T ss_pred CCccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceEEEEEEecCCCccccccc
Q 032861 83 GVIIMHVVVQPSLAKTKTVH 102 (132)
Q Consensus 83 ~~~tmHlv~r~~~~~~~~~k 102 (132)
..+|||||+|++.+.++.+|
T Consensus 81 ~~~TmHvvlr~~~~~~~~~k 100 (113)
T cd01814 81 GVITMHVVVQPPLADKKTEK 100 (113)
T ss_pred CceEEEEEecCCCCCccccc
Confidence 89999999999999888654
No 2
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.94 E-value=1.1e-26 Score=168.55 Aligned_cols=99 Identities=44% Similarity=0.875 Sum_probs=83.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
++|+|+|++.+|+|+.++.|++++||++||+.|.++||+||+..|.+++.+||||+||+|+|+.||++|+++.|+.++++
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 57999999999999999999999999999999999999999989999999999999999999999999999999887778
Q ss_pred EEEEEEecCCCccccccce
Q 032861 85 IIMHVVVQPSLAKTKTVHF 103 (132)
Q Consensus 85 ~tmHlv~r~~~~~~~~~k~ 103 (132)
++|||++++..+.+++.++
T Consensus 81 ~vmHlvvrp~~~~~~~~~~ 99 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEKK 99 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS-
T ss_pred EEEEEEecCCCCCcccccc
Confidence 9999999999888776543
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.75 E-value=6.1e-18 Score=112.74 Aligned_cols=73 Identities=23% Similarity=0.393 Sum_probs=65.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|.||+.+|.. .++++++++||++||++|+++ +++| +++|||+|+|+.|+|+.+|++|+|+++ +++
T Consensus 2 ~i~vk~~~G~~-~~l~v~~~~tV~~lK~~i~~~-----~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~l 67 (74)
T cd01807 2 FLTVKLLQGRE-CSLQVSEKESVSTLKKLVSEH-----LNVP--EEQQRLLFKGKALADDKRLSDYSIGPN------AKL 67 (74)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCCHHHCCCCCC------CEE
Confidence 57889999955 478999999999999999988 3455 999999999999999999999999998 789
Q ss_pred EEEecCC
Q 032861 88 HVVVQPS 94 (132)
Q Consensus 88 Hlv~r~~ 94 (132)
|++++++
T Consensus 68 ~l~~~~~ 74 (74)
T cd01807 68 NLVVRPP 74 (74)
T ss_pred EEEEcCC
Confidence 9999864
No 4
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.75 E-value=4.7e-18 Score=116.95 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=62.2
Q ss_pred eEEEEEEeCCCCee-eeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccC--CCCCCCCC
Q 032861 6 LIDIKFRLYDGSDI-GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK--IPYGEVPG 82 (132)
Q Consensus 6 ~v~l~~rl~~G~~i-~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~--I~~gd~~~ 82 (132)
.|.|.+|..+|..+ ..+++++++||++||++|++.+| ...| +++|||||+||+|+|+.||++|. +.+|
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~---~~~~--~~~QrLIy~GKiLkD~~tL~~~~~~~~~~---- 71 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYP---SKPL--EQDQRLIYSGKLLPDHLKLRDVLRKQDEY---- 71 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcC---CCCC--hhHeEEEEcCeeccchhhHHHHhhcccCC----
Confidence 37899999999542 23455899999999999998865 1222 89999999999999999999996 8876
Q ss_pred ceEEEEEEe
Q 032861 83 GVIIMHVVV 91 (132)
Q Consensus 83 ~~~tmHlv~ 91 (132)
.|||||+
T Consensus 72 --~tiHLV~ 78 (79)
T cd01790 72 --HMVHLVC 78 (79)
T ss_pred --ceEEEEe
Confidence 7999987
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.74 E-value=9.8e-18 Score=111.89 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=62.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
+|.+|. + ...++++++++||++||++|+++ +++| +++|||||+||.|+|+.||++|+|+++ +|+
T Consensus 2 qi~vk~--~-~~~~l~v~~~~tV~~lK~~i~~~-----~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~------~tl 65 (74)
T cd01793 2 QLFVRA--Q-NTHTLEVTGQETVSDIKAHVAGL-----EGID--VEDQVLLLAGVPLEDDATLGQCGVEEL------CTL 65 (74)
T ss_pred EEEEEC--C-CEEEEEECCcCcHHHHHHHHHhh-----hCCC--HHHEEEEECCeECCCCCCHHHcCCCCC------CEE
Confidence 355555 3 34578999999999999999987 3455 999999999999999999999999988 799
Q ss_pred EEEecCCCc
Q 032861 88 HVVVQPSLA 96 (132)
Q Consensus 88 Hlv~r~~~~ 96 (132)
|+++++.++
T Consensus 66 ~l~~~l~GG 74 (74)
T cd01793 66 EVAGRLLGG 74 (74)
T ss_pred EEEEecCCC
Confidence 999998764
No 6
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.72 E-value=1.6e-17 Score=110.99 Aligned_cols=69 Identities=29% Similarity=0.407 Sum_probs=61.9
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEE
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmH 88 (132)
+++|+.+|..+ ++++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|..+ +|+|
T Consensus 1 ~~vk~~~G~~~-~l~v~~~~TV~~lK~~I~~~-----~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~------~tv~ 66 (70)
T cd01794 1 LKVRLSTGKDV-KLSVSSKDTVGQLKKQLQAA-----EGVD--PCCQRWFFSGKLLTDKTRLQETKIQKD------YVVQ 66 (70)
T ss_pred CeEEcCCCCEE-EEEECCcChHHHHHHHHHHH-----hCCC--HHHeEEEECCeECCCCCCHHHcCCCCC------CEEE
Confidence 57899999665 69999999999999999987 3455 999999999999999999999999977 7899
Q ss_pred EEe
Q 032861 89 VVV 91 (132)
Q Consensus 89 lv~ 91 (132)
+++
T Consensus 67 ~~~ 69 (70)
T cd01794 67 VIV 69 (70)
T ss_pred EEe
Confidence 976
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.71 E-value=4.5e-17 Score=110.79 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=65.5
Q ss_pred EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~-v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
.|.||+.+|..+..++ +++++||++||++|++. +++| +++|||||+||+|+|+.+|++|+|.+| ++
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~-----~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~------~~ 68 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQEL-----FNVE--PECQRLFYRGKQMEDGHTLFDYNVGLN------DI 68 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHH-----hCCC--HHHeEEEeCCEECCCCCCHHHcCCCCC------CE
Confidence 5889999996544675 79999999999999987 3455 999999999999999999999999998 78
Q ss_pred EEEEecCCC
Q 032861 87 MHVVVQPSL 95 (132)
Q Consensus 87 mHlv~r~~~ 95 (132)
+|+++++.+
T Consensus 69 i~l~~~~~~ 77 (78)
T cd01797 69 IQLLVRQDP 77 (78)
T ss_pred EEEEEecCC
Confidence 999998754
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.70 E-value=5.4e-17 Score=108.31 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=64.9
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEE
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmH 88 (132)
|.||+.+|. ..++++++++||++||++|++. +++| +++|+|+|+|+.|+|+.+|++|+|+++ .++|
T Consensus 1 i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~-----~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~------~tl~ 66 (74)
T cd01810 1 ILVRNDKGR-SSIYEVQLTQTVATLKQQVSQR-----ERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPG------CTVF 66 (74)
T ss_pred CEEECCCCC-EEEEEECCcChHHHHHHHHHHH-----hCCC--HHHeEEEECCEECCCCCCHHHcCCCCC------CEEE
Confidence 468899995 4579999999999999999987 2345 999999999999999999999999998 6899
Q ss_pred EEecCCCc
Q 032861 89 VVVQPSLA 96 (132)
Q Consensus 89 lv~r~~~~ 96 (132)
++++..++
T Consensus 67 l~~~l~gg 74 (74)
T cd01810 67 MNLRLRGG 74 (74)
T ss_pred EEEEccCC
Confidence 99987653
No 9
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.70 E-value=5.8e-17 Score=106.82 Aligned_cols=70 Identities=24% Similarity=0.423 Sum_probs=62.0
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEE
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmH 88 (132)
|.||+.+|.. .++++++++||++||++|+++ +++| +++|+|+|+|+.|+|+.+|++|+|+++ +|+|
T Consensus 1 i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-----~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~------stl~ 66 (70)
T cd01798 1 VYVRTNTGHT-FPVEVDPDTDIKQLKEVVAKR-----QGVP--PDQLRVIFAGKELRNTTTIQECDLGQQ------SILH 66 (70)
T ss_pred CEEEcCCCCE-EEEEECCCChHHHHHHHHHHH-----HCCC--HHHeEEEECCeECCCCCcHHHcCCCCC------CEEE
Confidence 4678899955 478999999999999999988 2344 999999999999999999999999998 7899
Q ss_pred EEec
Q 032861 89 VVVQ 92 (132)
Q Consensus 89 lv~r 92 (132)
++.|
T Consensus 67 l~~~ 70 (70)
T cd01798 67 AVRR 70 (70)
T ss_pred EEeC
Confidence 9875
No 10
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.69 E-value=9.6e-17 Score=114.68 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=68.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
+...|.||+.+|..+ .+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 26 ~~M~I~Vk~l~G~~~-~leV~~~~TV~~lK~kI~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~------ 91 (103)
T cd01802 26 DTMELFIETLTGTCF-ELRVSPFETVISVKAKIQRL-----EGIP--VAQQHLIWNNMELEDEYCLNDYNISEG------ 91 (103)
T ss_pred CCEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHH-----hCCC--hHHEEEEECCEECCCCCcHHHcCCCCC------
Confidence 457899999999654 68999999999999999987 3455 999999999999999999999999998
Q ss_pred EEEEEEecCCCc
Q 032861 85 IIMHVVVQPSLA 96 (132)
Q Consensus 85 ~tmHlv~r~~~~ 96 (132)
+|+|++++..++
T Consensus 92 stL~l~~~l~GG 103 (103)
T cd01802 92 CTLKLVLAMRGG 103 (103)
T ss_pred CEEEEEEecCCC
Confidence 789999987664
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.69 E-value=1.3e-16 Score=106.04 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=66.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
+|.||+.+|.. .++++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|++.++ .++
T Consensus 2 ~i~vk~~~G~~-~~l~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~------~~i 67 (76)
T PTZ00044 2 QILIKTLTGKK-QSFNFEPDNTVQQVKMALQEK-----EGID--VKQIRLIYSGKQMSDDLKLSDYKVVPG------STI 67 (76)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEEccCCCcHHHcCCCCC------CEE
Confidence 57889999965 478999999999999999998 2344 999999999999999999999999998 789
Q ss_pred EEEecCCCc
Q 032861 88 HVVVQPSLA 96 (132)
Q Consensus 88 Hlv~r~~~~ 96 (132)
|+++++.++
T Consensus 68 ~l~~~~~gg 76 (76)
T PTZ00044 68 HMVLQLRGG 76 (76)
T ss_pred EEEEEccCC
Confidence 999987653
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.67 E-value=1.9e-16 Score=106.73 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=62.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
+.|.|+...|..+ .+++++++||++||++|++.. ++| +++|||||+|++|+|+.||++|||.+| ++
T Consensus 2 ~~i~vkt~~Gk~~-~~~v~~~~TV~~LK~~I~~~~-----~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~------st 67 (73)
T cd01791 2 IEVVCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQT-----GTR--PEKIVLKKWYTIFKDHISLGDYEIHDG------MN 67 (73)
T ss_pred EEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHh-----CCC--hHHEEEEeCCcCCCCCCCHHHcCCCCC------CE
Confidence 5788999999665 679999999999999999882 244 999999999999999999999999998 78
Q ss_pred EEEE
Q 032861 87 MHVV 90 (132)
Q Consensus 87 mHlv 90 (132)
+||.
T Consensus 68 v~l~ 71 (73)
T cd01791 68 LELY 71 (73)
T ss_pred EEEE
Confidence 9985
No 13
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.66 E-value=3.4e-16 Score=103.52 Aligned_cols=71 Identities=21% Similarity=0.379 Sum_probs=62.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
+.|.|+..+|. . .+++++++||++||++|++.. ++| +++|||+|+|+.|+|+.+|++|++++| ++
T Consensus 1 ~~i~vk~~~g~-~-~l~v~~~~TV~~lK~~I~~~~-----~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~------st 65 (71)
T cd01808 1 IKVTVKTPKDK-E-EIEIAEDASVKDFKEAVSKKF-----KAN--QEQLVLIFAGKILKDTDTLTQHNIKDG------LT 65 (71)
T ss_pred CEEEEEcCCCC-E-EEEECCCChHHHHHHHHHHHh-----CCC--HHHEEEEECCeEcCCCCcHHHcCCCCC------CE
Confidence 35788899994 4 789999999999999999883 244 999999999999999999999999998 78
Q ss_pred EEEEec
Q 032861 87 MHVVVQ 92 (132)
Q Consensus 87 mHlv~r 92 (132)
+|++++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 999875
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.66 E-value=6e-16 Score=101.94 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=66.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|.|+..+|..+ .+++++++||++||++|++.. ++| ++.|||+|.|+.|+|+.+|++|++.+| .++
T Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~-----g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g------~~i 67 (76)
T cd01806 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKE-----GIP--PQQQRLIYSGKQMNDDKTAADYKLEGG------SVL 67 (76)
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHhHhh-----CCC--hhhEEEEECCeEccCCCCHHHcCCCCC------CEE
Confidence 588999999654 689999999999999999872 344 999999999999999999999999998 689
Q ss_pred EEEecCCCc
Q 032861 88 HVVVQPSLA 96 (132)
Q Consensus 88 Hlv~r~~~~ 96 (132)
|++++..++
T Consensus 68 ~l~~~~~gg 76 (76)
T cd01806 68 HLVLALRGG 76 (76)
T ss_pred EEEEEccCC
Confidence 999987653
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.65 E-value=8.1e-16 Score=104.16 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=65.0
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
..|.|+...|.. .+++++++.||++||++|+++. ++| +++|||+|+|+.|+|+ +|++|||.+| ++
T Consensus 2 m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~~~-----~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~------~~ 66 (78)
T cd01804 2 MNLNIHSTTGTR-FDLSVPPDETVEGLKKRISQRL-----KVP--KERLALLHRETRLSSG-KLQDLGLGDG------SK 66 (78)
T ss_pred eEEEEEECCCCE-EEEEECCcCHHHHHHHHHHHHh-----CCC--hHHEEEEECCcCCCCC-cHHHcCCCCC------CE
Confidence 578899999965 4799999999999999999882 233 9999999999999999 9999999998 68
Q ss_pred EEEEecCCCc
Q 032861 87 MHVVVQPSLA 96 (132)
Q Consensus 87 mHlv~r~~~~ 96 (132)
+|++....++
T Consensus 67 i~l~~~~~~~ 76 (78)
T cd01804 67 LTLVPTVEAG 76 (78)
T ss_pred EEEEeecccc
Confidence 9998877543
No 16
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.64 E-value=6.9e-16 Score=103.68 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=62.7
Q ss_pred CCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEecCC
Q 032861 15 DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPS 94 (132)
Q Consensus 15 ~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv~r~~ 94 (132)
+| ..+++++++++||++||++|++. +++| +++|+|+|.|+.|+|+.+|++|++.+| .++||++++.
T Consensus 6 ~g-~~~~l~v~~~~TV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g------~~l~v~~~~~ 71 (76)
T cd01800 6 NG-QMLNFTLQLSDPVSVLKVKIHEE-----TGMP--AGKQKLQYEGIFIKDSNSLAYYNLANG------TIIHLQLKER 71 (76)
T ss_pred CC-eEEEEEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCEEcCCCCcHHHcCCCCC------CEEEEEEecC
Confidence 56 56689999999999999999987 2455 999999999999999999999999998 6899999988
Q ss_pred Ccccc
Q 032861 95 LAKTK 99 (132)
Q Consensus 95 ~~~~~ 99 (132)
++.++
T Consensus 72 gg~~~ 76 (76)
T cd01800 72 GGRKK 76 (76)
T ss_pred CCcCC
Confidence 87654
No 17
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.64 E-value=1.1e-15 Score=100.66 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=66.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|.||..+|..+ .+++++++||++||++|++.. ++| ++.|||+|.|+.|+|+.+|++|++.+| +++
T Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~-----g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~i 67 (76)
T cd01803 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (76)
T ss_pred EEEEEcCCCCEE-EEEECCcCcHHHHHHHHHHHh-----CCC--HHHeEEEECCEECCCCCcHHHcCCCCC------CEE
Confidence 578899999665 689999999999999999882 233 999999999999999999999999998 789
Q ss_pred EEEecCCCc
Q 032861 88 HVVVQPSLA 96 (132)
Q Consensus 88 Hlv~r~~~~ 96 (132)
|++++..++
T Consensus 68 ~l~~~~~gg 76 (76)
T cd01803 68 HLVLRLRGG 76 (76)
T ss_pred EEEEEccCC
Confidence 999997664
No 18
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.64 E-value=1.8e-15 Score=98.44 Aligned_cols=68 Identities=29% Similarity=0.475 Sum_probs=60.4
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEe
Q 032861 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (132)
Q Consensus 12 rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv~ 91 (132)
|+.+|+ .+.+++++++||.+||++|++++. +| ++.|+|+|.|+.|+|+.||++|+|.+| .+||+++
T Consensus 1 k~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~-----~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~------~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGK-TFTLEVDPDDTVADLKQKIAEETG-----IP--PEQQRLIYNGKELDDDKTLSDYGIKDG------STIHLVI 66 (69)
T ss_dssp EETTSE-EEEEEEETTSBHHHHHHHHHHHHT-----ST--GGGEEEEETTEEESTTSBTGGGTTSTT------EEEEEEE
T ss_pred CCCCCc-EEEEEECCCCCHHHhhhhcccccc-----cc--cccceeeeeeecccCcCcHHHcCCCCC------CEEEEEE
Confidence 577885 457999999999999999999832 33 999999999999999999999999999 7899988
Q ss_pred cC
Q 032861 92 QP 93 (132)
Q Consensus 92 r~ 93 (132)
++
T Consensus 67 k~ 68 (69)
T PF00240_consen 67 KP 68 (69)
T ss_dssp SS
T ss_pred ec
Confidence 75
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.63 E-value=1.7e-15 Score=98.85 Aligned_cols=72 Identities=31% Similarity=0.499 Sum_probs=63.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
+.|.++..+|. ..++++++++||++||++|++.. ++| ++.|||+|.|+.|+|+.+|++|++++| ++
T Consensus 1 i~i~vk~~~g~-~~~~~v~~~~tv~~lK~~i~~~~-----gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (72)
T cd01809 1 IEIKVKTLDSQ-THTFTVEEEITVLDLKEKIAEEV-----GIP--VEQQRLIYSGRVLKDDETLSEYKVEDG------HT 66 (72)
T ss_pred CEEEEEeCCCC-EEEEEECCCCcHHHHHHHHHHHH-----CcC--HHHeEEEECCEECCCcCcHHHCCCCCC------CE
Confidence 46888999994 45799999999999999999883 344 999999999999999999999999998 78
Q ss_pred EEEEec
Q 032861 87 MHVVVQ 92 (132)
Q Consensus 87 mHlv~r 92 (132)
+|++.+
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 999865
No 20
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.61 E-value=3.1e-15 Score=99.40 Aligned_cols=72 Identities=31% Similarity=0.378 Sum_probs=62.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccC--CCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIV--PKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~--P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.|.++..+|.. +.+++++++||++||+.|++.. ++ | +++|||+|+|+.|+|+.+|++|++++| +
T Consensus 2 ~i~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~~~-----~i~~~--~~~q~L~~~G~~L~d~~~L~~~~i~~~------~ 67 (77)
T cd01805 2 KITFKTLKQQT-FPIEVDPDDTVAELKEKIEEEK-----GCDYP--PEQQKLIYSGKILKDDTTLEEYKIDEK------D 67 (77)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHhh-----CCCCC--hhHeEEEECCEEccCCCCHHHcCCCCC------C
Confidence 57889999954 5799999999999999999883 23 3 999999999999999999999999998 5
Q ss_pred EEEEEecC
Q 032861 86 IMHVVVQP 93 (132)
Q Consensus 86 tmHlv~r~ 93 (132)
++|++++.
T Consensus 68 ~i~~~~~~ 75 (77)
T cd01805 68 FVVVMVSK 75 (77)
T ss_pred EEEEEEec
Confidence 67776653
No 21
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.61 E-value=2.1e-15 Score=102.17 Aligned_cols=75 Identities=24% Similarity=0.331 Sum_probs=65.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEE--EecCeecCCCCcccccCCCCCCCCCce
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrL--Iy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
++|.|+...|..+ .++++++.||++||++|++.. ++| +++||| +|.|++|+|+.+|++||+.+|
T Consensus 3 ~~i~Vk~~~G~~~-~~~v~~~~TV~~lK~~I~~~~-----~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~g------ 68 (80)
T cd01792 3 WDLKVKMLGGNEF-LVSLRDSMTVSELKQQIAQKI-----GVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPG------ 68 (80)
T ss_pred eEEEEEeCCCCEE-EEEcCCCCcHHHHHHHHHHHh-----CCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCC------
Confidence 7899999999665 689999999999999999883 234 999999 999999999999999999998
Q ss_pred EEEEEEecCCC
Q 032861 85 IIMHVVVQPSL 95 (132)
Q Consensus 85 ~tmHlv~r~~~ 95 (132)
+++|++++..+
T Consensus 69 s~l~l~~~~~~ 79 (80)
T cd01792 69 STVLLVVQNCS 79 (80)
T ss_pred CEEEEEEEccC
Confidence 68999988543
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.60 E-value=2.8e-15 Score=99.76 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=58.0
Q ss_pred EEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCC-CcccccCCCCCCCCCceEE
Q 032861 9 IKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 9 l~~rl~-~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~-~tLs~~~I~~gd~~~~~~t 86 (132)
|+|++. +|. ..++++++++||++||++|++. +++| +++|||+|+||.|+|+ .+|++|+|++| .+
T Consensus 1 l~v~~~~~g~-~~~l~v~~~~TV~~lK~~I~~~-----~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~------~~ 66 (71)
T cd01796 1 ITVYTARSET-TFSLDVDPDLELENFKALCEAE-----SGIP--ASQQQLIYNGRELVDNKRLLALYGVKDG------DL 66 (71)
T ss_pred CEEEECCCCC-EEEEEECCcCCHHHHHHHHHHH-----hCCC--HHHeEEEECCeEccCCcccHHHcCCCCC------CE
Confidence 578899 774 4579999999999999999988 3455 9999999999999887 68999999999 56
Q ss_pred EEE
Q 032861 87 MHV 89 (132)
Q Consensus 87 mHl 89 (132)
+|+
T Consensus 67 l~l 69 (71)
T cd01796 67 VVL 69 (71)
T ss_pred EEE
Confidence 776
No 23
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.56 E-value=5e-15 Score=101.11 Aligned_cols=56 Identities=29% Similarity=0.442 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEe
Q 032861 26 SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (132)
Q Consensus 26 ~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv~ 91 (132)
.++||++||++|+++++ |++| ++++|||||+||+|+|+.||++|+|++| +++||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~---egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~g------stlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLP---DSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSG------STIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhc---cCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCC------CEEEEEe
Confidence 46799999999999853 3332 1899999999999999999999999999 7899975
No 24
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.5e-15 Score=98.11 Aligned_cols=69 Identities=25% Similarity=0.457 Sum_probs=62.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
-|++++.+|+.| .++++|+++|+.+|+.|+++ |++| |.+|||||+||++.|+.|-++|++.-| +++
T Consensus 2 ~iKvktLt~KeI-eidIep~DkverIKErvEEk-----eGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~G------SVl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGG------SVL 67 (70)
T ss_pred eeeEeeeccceE-EEeeCcchHHHHHHHHhhhh-----cCCC--chhhhhhhccccccccccHHHhhhccc------eeE
Confidence 478899999888 68999999999999999987 6677 999999999999999999999999988 779
Q ss_pred EEE
Q 032861 88 HVV 90 (132)
Q Consensus 88 Hlv 90 (132)
|++
T Consensus 68 Hlv 70 (70)
T KOG0005|consen 68 HLV 70 (70)
T ss_pred eeC
Confidence 975
No 25
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.51 E-value=6.1e-14 Score=91.55 Aligned_cols=69 Identities=23% Similarity=0.257 Sum_probs=59.2
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
|.|+++.. | ....+++++++||++||++|++. +++| +++|||+|.|+.|+|+.+|++|++.+| .+
T Consensus 1 i~i~vk~~-g-~~~~i~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g------~~ 65 (71)
T cd01812 1 IRVRVKHG-G-ESHDLSISSQATFGDLKKMLAPV-----TGVE--PRDQKLIFKGKERDDAETLDMSGVKDG------SK 65 (71)
T ss_pred CEEEEEEC-C-EEEEEEECCCCcHHHHHHHHHHh-----hCCC--hHHeEEeeCCcccCccCcHHHcCCCCC------CE
Confidence 46777776 6 55679999999999999999987 2344 999999999999999999999999998 57
Q ss_pred EEEE
Q 032861 87 MHVV 90 (132)
Q Consensus 87 mHlv 90 (132)
+|++
T Consensus 66 l~v~ 69 (71)
T cd01812 66 VMLL 69 (71)
T ss_pred EEEe
Confidence 7775
No 26
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.6e-14 Score=110.23 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=68.6
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEE
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmH 88 (132)
|-++...|..+ .+++++++||..+|++|++. |+|| +++|||||+|+.|+|..||+||+|+.. +|+|
T Consensus 3 ifVk~l~~kti-~~eve~~~ti~~~Kakiq~~-----egIp--~dqqrlifag~qLedgrtlSDY~Iqke------stl~ 68 (156)
T KOG0004|consen 3 IFVKTLTGKTI-TLEVEANDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLH 68 (156)
T ss_pred cchhhccccce-eeeecccccHHHHHHhhhcc-----cCCC--chhhhhhhhhcccccCCcccccccccc------ceEE
Confidence 34556677444 68999999999999999954 7787 999999999999999999999999977 8999
Q ss_pred EEecCCCccccccc
Q 032861 89 VVVQPSLAKTKTVH 102 (132)
Q Consensus 89 lv~r~~~~~~~~~k 102 (132)
++++..++.+++.|
T Consensus 69 l~l~l~Gg~kkrkk 82 (156)
T KOG0004|consen 69 LVLRLRGGAKKRKK 82 (156)
T ss_pred EEEEecCCcccccc
Confidence 99999999877533
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.46 E-value=6.7e-13 Score=91.51 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=70.2
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
...|.|+++..+|..+ .+.+.++++++.||+.++++ +++| +++|||+|.|+.|+|+.|+++|++.+|
T Consensus 9 ~~~i~I~v~~~~g~~~-~~~v~~~~~l~~l~~~y~~~-----~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~----- 75 (87)
T cd01763 9 SEHINLKVKGQDGNEV-FFKIKRSTPLKKLMEAYCQR-----QGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDG----- 75 (87)
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCCHHHHHHHHHHHH-----hCCC--ccceEEEECCeECCCCCCHHHcCCCCC-----
Confidence 5679999999999665 68999999999999999988 3444 899999999999999999999999999
Q ss_pred eEEEEEEecCCCc
Q 032861 84 VIIMHVVVQPSLA 96 (132)
Q Consensus 84 ~~tmHlv~r~~~~ 96 (132)
.++|++++..++
T Consensus 76 -d~I~v~l~l~GG 87 (87)
T cd01763 76 -DEIEVMLEQTGG 87 (87)
T ss_pred -CEEEEEEecccC
Confidence 579999887764
No 28
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.45 E-value=1.4e-13 Score=120.17 Aligned_cols=78 Identities=27% Similarity=0.368 Sum_probs=66.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.+.|++|+.++ .+.|.|..+.||.+||+.|+..+. +| +++|+|||+||+|+|++||..|||.+| .
T Consensus 15 ~irV~Vkt~~d--k~~~~V~~~ssV~qlKE~I~~~f~-----a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg------~ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD--KYEVNVASDSSVLQLKELIAQRFG-----AP--PDQLVLIYAGRILKDDDTLKQYGIQDG------H 79 (493)
T ss_pred eeEEEEecCCc--ceeEecccchHHHHHHHHHHHhcC-----CC--hhHeeeeecCccccChhhHHHcCCCCC------c
Confidence 36777777776 357899999999999999999853 22 999999999999999999999999999 8
Q ss_pred EEEEEecCCCccc
Q 032861 86 IMHVVVQPSLAKT 98 (132)
Q Consensus 86 tmHlv~r~~~~~~ 98 (132)
|||||++......
T Consensus 80 TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 80 TVHLVIKSQPRPT 92 (493)
T ss_pred EEEEEeccCCCCC
Confidence 9999998664433
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.9e-14 Score=104.83 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=64.6
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEE
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmH 88 (132)
+-.+...|+.+ .++++|++||..||++|+.. |++| +++|+|||+||+|+|..||++|++... +|+|
T Consensus 3 ~~~~~~~GKT~-~le~EpS~ti~~vKA~i~~~-----~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~------~Tl~ 68 (128)
T KOG0003|consen 3 IFVKTLTGKTI-TLEVEPSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKE------STLH 68 (128)
T ss_pred EEEEEeeCceE-EEEecccchHHHHHHHhccc-----cCCC--HHHHHHHhcccccccCCcccccCccch------hhhh
Confidence 34556788665 58999999999999999865 5677 999999999999999999999999976 7899
Q ss_pred EEecCCCc
Q 032861 89 VVVQPSLA 96 (132)
Q Consensus 89 lv~r~~~~ 96 (132)
+++++.++
T Consensus 69 ~~~rL~GG 76 (128)
T KOG0003|consen 69 LVLRLRGG 76 (128)
T ss_pred hhHHHhcC
Confidence 99998877
No 30
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.38 E-value=1.2e-12 Score=88.20 Aligned_cols=68 Identities=24% Similarity=0.161 Sum_probs=55.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEe---cCeecCCCCcccccCCCCCCCCCce
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS---SGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy---~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
.|.++. .| ..+++++++++||++||++|++. +++| +++||||| .|+.|+|+.+|++|+|++|
T Consensus 2 ~i~vk~-~g-~~~~v~v~~~~Tv~~lK~~i~~~-----tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g------ 66 (74)
T cd01813 2 PVIVKW-GG-QEYSVTTLSEDTVLDLKQFIKTL-----TGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPN------ 66 (74)
T ss_pred EEEEEE-CC-EEEEEEECCCCCHHHHHHHHHHH-----HCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCC------
Confidence 344444 34 45689999999999999999998 2344 99999997 9999999999999999998
Q ss_pred EEEEEE
Q 032861 85 IIMHVV 90 (132)
Q Consensus 85 ~tmHlv 90 (132)
..++|+
T Consensus 67 ~~i~lm 72 (74)
T cd01813 67 TKIMMM 72 (74)
T ss_pred CEEEEE
Confidence 456654
No 31
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=1.4e-12 Score=111.50 Aligned_cols=67 Identities=33% Similarity=0.429 Sum_probs=57.9
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.|+||+.+|.. +.+++++++||.+||++|++... ++.+| +++|||||+||+|+|+.+|++|+|++++
T Consensus 2 kItVKtl~g~~-~~IeV~~~~TV~dLK~kI~~~~g--~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~ 68 (378)
T TIGR00601 2 TLTFKTLQQQK-FKIDMEPDETVKELKEKIEAEQG--KDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD 68 (378)
T ss_pred EEEEEeCCCCE-EEEEeCCcChHHHHHHHHHHhhC--CCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC
Confidence 68899999955 57899999999999999998721 12255 9999999999999999999999999984
No 32
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.34 E-value=4.1e-12 Score=86.02 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=56.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeec-CCCCcccccCCC-CCCCCCce
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQCKIP-YGEVPGGV 84 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~L-eD~~tLs~~~I~-~gd~~~~~ 84 (132)
++|.=+...|..+ .+++++++||++||++|+++ +++| +++||| |.|+.| +|+++|++|++. +|
T Consensus 3 ~~~~~~~~~~~t~-~l~v~~~~TV~~lK~kI~~~-----~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g------ 67 (75)
T cd01799 3 VSVEDAQSHTVTI-WLTVRPDMTVAQLKDKVFLD-----YGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNG------ 67 (75)
T ss_pred EEEeccccCCCeE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCC------
Confidence 5566666777555 68999999999999999987 4555 999999 999999 577999999998 66
Q ss_pred EEEEEE
Q 032861 85 IIMHVV 90 (132)
Q Consensus 85 ~tmHlv 90 (132)
.++||-
T Consensus 68 ~~~~l~ 73 (75)
T cd01799 68 DSAFLY 73 (75)
T ss_pred CEEEEE
Confidence 567774
No 33
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.34 E-value=3.7e-12 Score=80.40 Aligned_cols=63 Identities=30% Similarity=0.493 Sum_probs=54.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~g 78 (132)
+.|++|..++ ...+++++++||++||++|++.+ ++| ++.|+|+|.|+.|+|+.+|++|++.+|
T Consensus 1 ~~i~vk~~~~--~~~~~v~~~~tv~~lk~~i~~~~-----~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLDG--TITLEVKPSDTVSELKEKIAELT-----GIP--VEQQRLIYKGKVLEDDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECCc--eEEEEECCCCcHHHHHHHHHHHH-----CCC--HHHEEEEECCEECCCCCCHHHcCCcCC
Confidence 3678888883 45789999999999999999883 234 889999999999999999999999976
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.20 E-value=7.2e-11 Score=75.31 Aligned_cols=67 Identities=31% Similarity=0.480 Sum_probs=55.8
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 032861 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (132)
Q Consensus 11 ~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv 90 (132)
++..+|..+ .+.+++++||++||++|++.+. +| ++.|+|+|.|+.|+|+.+|++|++.++ .++|+.
T Consensus 2 v~~~~~~~~-~~~~~~~~ti~~lK~~i~~~~~-----~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~------~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTF-ELEVSPDDTVAELKAKIAAKEG-----VP--PEQQRLIYAGKILKDDKTLSDYGIQDG------STLHLV 67 (69)
T ss_pred eEccCCCEE-EEEECCCChHHHHHHHHHHHHC-----cC--hHHEEEEECCcCCCCcCCHHHCCCCCC------CEEEEE
Confidence 455677554 6899999999999999999843 33 899999999999999999999999988 567765
Q ss_pred e
Q 032861 91 V 91 (132)
Q Consensus 91 ~ 91 (132)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 3
No 35
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.11 E-value=1.6e-10 Score=97.29 Aligned_cols=67 Identities=25% Similarity=0.373 Sum_probs=59.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCC
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~ 80 (132)
.|+||+..|..+ ++++.|+.||.+||.+|+..... + .| ++.|+|||+||+|.|+.|+.+|++.+++|
T Consensus 2 ~lt~KtL~q~~F-~iev~Pe~tV~evK~kIet~~g~--d-yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~f 68 (340)
T KOG0011|consen 2 KLTVKTLKQQTF-TIEVKPEDTVVEVKKKIETEKGP--D-YP--AEQQKLIYSGKILKDETTVGEYKVKEKKF 68 (340)
T ss_pred eeEeeeccCcee-EeecCcchhHHHHHHHHHhccCC--C-Cc--hhhheeeecceeccCCcchhhhccccCce
Confidence 689999999766 79999999999999999988322 2 44 99999999999999999999999999965
No 36
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.97 E-value=1.5e-09 Score=78.13 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=56.1
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeec-CCCCcccccCCCCCCCCCceEEEEEE
Q 032861 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMHVV 90 (132)
Q Consensus 12 rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~L-eD~~tLs~~~I~~gd~~~~~~tmHlv 90 (132)
|+.-| +. .++|++++||++||.+|+..+. .| |.+|+|+|.|+.| +|..||++|||..+ ++++|.
T Consensus 11 r~~~~-~~-~L~V~~~~TVg~LK~lImQ~f~-----V~--P~dQkL~~dG~~L~DDsrTLssyGv~sg------Svl~Ll 75 (107)
T cd01795 11 RKVRG-EK-ALLVSANQTLKELKIQIMHAFS-----VA--PFDQNLSIDGKILSDDCATLGTLGVIPE------SVILLK 75 (107)
T ss_pred ccCCC-Cc-eEEeCccccHHHHHHHHHHHhc-----CC--cccceeeecCceeccCCccHHhcCCCCC------CEEEEE
Confidence 44455 22 5799999999999999999843 33 9999999999999 78999999999988 678888
Q ss_pred ecCC
Q 032861 91 VQPS 94 (132)
Q Consensus 91 ~r~~ 94 (132)
+..+
T Consensus 76 ideP 79 (107)
T cd01795 76 ADEP 79 (107)
T ss_pred ecCC
Confidence 7533
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.1e-09 Score=102.51 Aligned_cols=77 Identities=21% Similarity=0.403 Sum_probs=67.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
.++++|++|. .+.+|.++..+||.++|++|.++. +|| .+-|||||.||+|.|++++.+|+| +| -+
T Consensus 3 ~~v~vktld~-r~~t~~ig~q~ti~~~~d~~r~~~-----ni~--s~~qr~i~~grvl~~~k~vq~~~v-dg------k~ 67 (1143)
T KOG4248|consen 3 PNVLVKTLDS-RTRTFIIGAQMTIKEFKDHIRASV-----NIP--SEKQRLIYQGRVLQDDKKVQEYNV-DG------KV 67 (1143)
T ss_pred cceeeeeccc-ceeEEEechHHHHHHHHHHHHHhc-----ccc--cccceeeecceeeccchhhhhccC-CC------eE
Confidence 3589999999 566899999999999999999982 344 999999999999999999999999 67 68
Q ss_pred EEEEecCCCccc
Q 032861 87 MHVVVQPSLAKT 98 (132)
Q Consensus 87 mHlv~r~~~~~~ 98 (132)
+|||-|++++..
T Consensus 68 ~hlverppp~~~ 79 (1143)
T KOG4248|consen 68 IHLVERPPPQTH 79 (1143)
T ss_pred EEeeccCCCCcc
Confidence 999999777643
No 38
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.94 E-value=6e-09 Score=68.31 Aligned_cols=71 Identities=31% Similarity=0.415 Sum_probs=58.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCC-cceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV-TEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~-~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
+.|+++..+|.. ..+.+.+++++..|++.++++. ++| + +.++|+|.|+.|++++|++++++.+| .
T Consensus 1 I~i~v~~~~~~~-~~~~v~~~~~~~~l~~~~~~~~-----~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~------d 66 (72)
T PF11976_consen 1 ITIKVRSQDGKE-IKFKVKPTTTVSKLIEKYCEKK-----GIP--PEESIRLIFDGKRLDPNDTPEDLGIEDG------D 66 (72)
T ss_dssp EEEEEEETTSEE-EEEEEETTSCCHHHHHHHHHHH-----TTT--T-TTEEEEETTEEE-TTSCHHHHT-STT------E
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHhh-----CCC--ccceEEEEECCEEcCCCCCHHHCCCCCC------C
Confidence 578899999964 4789999999999999999882 233 6 89999999999999999999999999 5
Q ss_pred EEEEEe
Q 032861 86 IMHVVV 91 (132)
Q Consensus 86 tmHlv~ 91 (132)
++++++
T Consensus 67 ~Idv~I 72 (72)
T PF11976_consen 67 TIDVII 72 (72)
T ss_dssp EEEEE-
T ss_pred EEEEEC
Confidence 688763
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.91 E-value=1e-08 Score=70.39 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=54.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEE-EecCe-----ec-CCCCcccccCCCCCCC
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSGK-----IL-ENNKTVGQCKIPYGEV 80 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrL-Iy~Gk-----~L-eD~~tLs~~~I~~gd~ 80 (132)
.|.+............+++++||.+||++++... ++| ++.||| +|.|+ .| +|+++|+.|++.+|
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~-----G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg-- 73 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVV-----GTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDG-- 73 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHH-----CCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCC--
Confidence 4444443322333345999999999999998873 344 999999 58999 45 89999999999999
Q ss_pred CCceEEEEEEe
Q 032861 81 PGGVIIMHVVV 91 (132)
Q Consensus 81 ~~~~~tmHlv~ 91 (132)
.+||++-
T Consensus 74 ----~~IhVvD 80 (84)
T cd01789 74 ----CRIHVID 80 (84)
T ss_pred ----CEEEEEe
Confidence 7899864
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.71 E-value=1.8e-07 Score=58.54 Aligned_cols=71 Identities=28% Similarity=0.480 Sum_probs=59.6
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEE
Q 032861 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (132)
Q Consensus 10 ~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHl 89 (132)
.+....|+.+ .+.+.++.+|..+|.+|+.. +++| +..|+|.|.|+.|+|+.+|.+|+|..+ .++|+
T Consensus 3 ~~~~~~gk~~-~~~~~~~~~i~~~k~~i~~~-----~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~------~~~~l 68 (75)
T KOG0001|consen 3 FVKTLDGKTI-TLEVSPSDTIEVVKAKIRDK-----EGIP--VDQQRLIFGGKPLEDGRTLADYNIQEG------STLHL 68 (75)
T ss_pred EEEecCCCEE-EEEecCCCHHHHHHHHHHhh-----cCCC--CeeEEEEECCEECcCCCcHHHhCCCCC------CEEEE
Confidence 4455777554 68999999999999999987 2344 999999999999999999999999987 67898
Q ss_pred EecCC
Q 032861 90 VVQPS 94 (132)
Q Consensus 90 v~r~~ 94 (132)
+.++.
T Consensus 69 ~~~~~ 73 (75)
T KOG0001|consen 69 VLSLR 73 (75)
T ss_pred EEecC
Confidence 87764
No 41
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.69 E-value=3.7e-08 Score=66.18 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=46.5
Q ss_pred eeeeEEe-CCcchHHHHHHHHHhhCCCCcccCCCCCcceEE--EecCeecCCCCcccccCCCCCCCCCceEEEEE
Q 032861 18 DIGPFRY-SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (132)
Q Consensus 18 ~i~~~~v-~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrL--Iy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHl 89 (132)
.+..+++ +++.||++||+.|++.++ ..| +++||| ++.|+.|.|+++|++||+.+| .++|+
T Consensus 12 ~~~~~~~~~~~aTV~dlk~~i~~~~~----~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g------~~lyv 74 (77)
T cd01801 12 PIGKLKVSSGDATIADLKKLIAKSSP----QLT--VNRQSLRLEPKGKSLKDDDTLVDLGVGAG------ATLYV 74 (77)
T ss_pred ceeecccCCCCccHHHHHHHHHHHcC----CCC--cceeEEEeCCCCcccCCcccHhhcCCCCC------CEEEE
Confidence 4433344 488999999999998732 122 889888 699999999999999999988 56664
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.66 E-value=7.2e-08 Score=80.60 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=53.3
Q ss_pred EEEEEeCCCCee--eeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEec---C----eecCCCCcccccCCCCC
Q 032861 8 DIKFRLYDGSDI--GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G----KILENNKTVGQCKIPYG 78 (132)
Q Consensus 8 ~l~~rl~~G~~i--~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~---G----k~LeD~~tLs~~~I~~g 78 (132)
.|.++..+|+.+ ..+++++++||++||++|+++.+ ..+ +++|||++. | +.|+|+++|+++|+.+|
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~----~~~--~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~g 75 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKK----KYY--PSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDG 75 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcC----CCC--hhheEEEEecCCCCcCccccCCCCCHHhcCCCCC
Confidence 466777888777 57899999999999999998732 112 899999983 4 48999999999999988
No 43
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.53 E-value=4.7e-07 Score=66.57 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=61.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCC-CCce
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV 84 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~-~~~~ 84 (132)
.++|.+|=..- .|+ .++.++.||.+||.+|+.-+. .| +++|||+-.+.+|+|++||++||+..... +..+
T Consensus 2 dvFlmIrR~KT-TiF-~dakes~tVlelK~~iegI~k-----~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~p 72 (119)
T cd01788 2 DVFLMIRRHKT-TIF-TDAKESTTVYELKRIVEGILK-----RP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAP 72 (119)
T ss_pred ceEEEEEecce-EEE-eecCCcccHHHHHHHHHHHhc-----CC--hhHheeecCceeecccccHHHcCccccccccCCC
Confidence 46777776655 444 699999999999999998743 33 99999998888999999999999965432 3345
Q ss_pred EEEEEEecC
Q 032861 85 IIMHVVVQP 93 (132)
Q Consensus 85 ~tmHlv~r~ 93 (132)
.++-|.+|.
T Consensus 73 A~vgLa~r~ 81 (119)
T cd01788 73 ATVGLAFRS 81 (119)
T ss_pred CeEEEEEec
Confidence 778888874
No 44
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.43 E-value=1.8e-06 Score=59.04 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=52.0
Q ss_pred EEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEec--------CeecCCCCcccccCCCC
Q 032861 7 IDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--------GKILENNKTVGQCKIPY 77 (132)
Q Consensus 7 v~l~~rl~~G~-~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~--------Gk~LeD~~tLs~~~I~~ 77 (132)
|.|.|...... ......+++++||++||++|+..+ ++| ++.|+|.+. -...+|+++|..|++.+
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~-----Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~d 74 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLT-----GIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKD 74 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHH-----TS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-ST
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHh-----CCC--cccEEEEEEecCCCccccccCCCccEeecCCCCC
Confidence 34445444431 245678999999999999999983 344 999999876 12337899999999999
Q ss_pred CCCCCceEEEEEE
Q 032861 78 GEVPGGVIIMHVV 90 (132)
Q Consensus 78 gd~~~~~~tmHlv 90 (132)
| .++|++
T Consensus 75 g------~~i~V~ 81 (87)
T PF14560_consen 75 G------MRIHVV 81 (87)
T ss_dssp T------EEEEEE
T ss_pred C------CEEEEE
Confidence 9 788875
No 45
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.32 E-value=1.6e-06 Score=61.63 Aligned_cols=60 Identities=25% Similarity=0.420 Sum_probs=46.3
Q ss_pred EEEEeCCC-CeeeeEEeC--CcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccC
Q 032861 9 IKFRLYDG-SDIGPFRYS--SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (132)
Q Consensus 9 l~~rl~~G-~~i~~~~v~--~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~ 74 (132)
|++|..++ -| .++++. .++||..||..|.+..|++ ++-..+||||+||.|.|...|+..-
T Consensus 3 l~IRFs~sipD-l~L~I~~~~~~Tv~~LK~lIR~~~p~~-----~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPD-LPLDIPSPNTTTVAWLKQLIRERLPPE-----PSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCC-ceeecCCCCcccHHHHHHHHHhhcCCC-----CccccEEeeecCcccCccchhhhhh
Confidence 55555664 23 357887 8899999999999998622 3477899999999999998887543
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.22 E-value=8e-06 Score=47.83 Aligned_cols=65 Identities=26% Similarity=0.384 Sum_probs=52.6
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 032861 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (132)
Q Consensus 12 rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv 90 (132)
++.+|. ...+.+.+.+|+++||++|.++++ .+ ++.++|.+.|..+++...+.++++..+ .++++.
T Consensus 3 ~~~~~~-~~~~~~~~~~tv~~l~~~i~~~~~-----~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~i~~~ 67 (69)
T cd00196 3 KLNDGK-TVELLVPSGTTVADLKEKLAKKLG-----LP--PEQQRLLVNGKILPDSLTLEDYGLQDG------DELVLV 67 (69)
T ss_pred EecCCC-EEEEEcCCCCcHHHHHHHHHHHHC-----cC--hHHeEEEECCeECCCCCcHHHcCCCCC------CEEEEE
Confidence 344563 446788899999999999999853 22 899999999999999998888999988 456664
No 47
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=8.9e-06 Score=69.31 Aligned_cols=74 Identities=24% Similarity=0.407 Sum_probs=59.0
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
+-|.|+-.+.+.-.+++|+.+++|.+||+.++.+. ++| ++++|+||+||.|.|+-|+..|.+... +.
T Consensus 3 ~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~-----gvp--~D~L~viFaGKeLs~~ttv~~cDL~qq------s~ 69 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQ-----GVP--ADQLRVIFAGKELSNDTTVQNCDLSQQ------SA 69 (446)
T ss_pred EEEEeCCccccCceeEEEecCCCHHHHHHHHHHhh-----CCC--hhheEEEEeccccccCceeeccccccc------ch
Confidence 45666644444556899999999999999999882 344 999999999999999999999988765 55
Q ss_pred EEEE-ecC
Q 032861 87 MHVV-VQP 93 (132)
Q Consensus 87 mHlv-~r~ 93 (132)
+|++ +||
T Consensus 70 ~hi~~lRP 77 (446)
T KOG0006|consen 70 THIMLLRP 77 (446)
T ss_pred hhhhccCc
Confidence 7776 555
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.83 E-value=3.6e-05 Score=52.76 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=38.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEec---Ceec--CCCCcccccCCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---GKIL--ENNKTVGQCKIPYGE 79 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~---Gk~L--eD~~tLs~~~I~~gd 79 (132)
.+=||||..+|... +++++++|+.+|+++|++.++ +| .+.|.|... ...| .++.||+++||++||
T Consensus 4 ~milRvrS~dG~~R--ie~~~~~t~~~L~~kI~~~l~-----~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 4 SMILRVRSKDGMKR--IEVSPSSTLSDLKEKISEQLS-----IP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp --EEEEE-SSEEEE--EEE-TTSBHHHHHHHHHHHS----------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred cEEEEEECCCCCEE--EEcCCcccHHHHHHHHHHHcC-----CC--CcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 46689999999543 699999999999999999954 22 445555221 1234 578999999999995
No 49
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.83 E-value=0.00034 Score=46.80 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=54.8
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE--ecCeecCCC--CcccccCCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILENN--KTVGQCKIPYGE 79 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI--y~Gk~LeD~--~tLs~~~I~~gd 79 (132)
+..+.|+||+.+|+.+ ...|.+++||.+|.+.|....... ......|+ |-.+.|.++ .||+++++..+
T Consensus 4 ~~~~~I~vRlpdG~~l-~~~F~~~~tl~~l~~~v~~~~~~~------~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~- 75 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRL-QRRFPKSDTLQDLYDFVESQLFSP------EESDFELITAFPRRELTDEDSKTLEEAGLLPS- 75 (82)
T ss_dssp SSEEEEEEEETTSTEE-EEEEETTSBHHHHHHHHHHHHHCT------TTSSEEEEESSSTEECCSTTTSBTCCCTTSSC-
T ss_pred CCEEEEEEECCCCCEE-EEEECCcchHHHHHHHHHHhcCCC------CCccEEEEeCCCCcCCCccccccHHHhcCCCC-
Confidence 7789999999999765 579999999999999999882200 02225665 566777443 69999998876
Q ss_pred CCCceEEEEE
Q 032861 80 VPGGVIIMHV 89 (132)
Q Consensus 80 ~~~~~~tmHl 89 (132)
.++++
T Consensus 76 -----~~l~v 80 (82)
T PF00789_consen 76 -----ATLIV 80 (82)
T ss_dssp -----EEEEE
T ss_pred -----eEEEE
Confidence 66765
No 50
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.39 E-value=0.0014 Score=44.56 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=51.9
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE--ecCeec-CCCCcccccCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL-ENNKTVGQCKIPYG 78 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI--y~Gk~L-eD~~tLs~~~I~~g 78 (132)
+....|.||+.+|+.+ ...|..++||++|.+.|....+.. ......|+ |=.|.| +++.||+++|+...
T Consensus 2 ~p~t~iqiRlpdG~r~-~~rF~~~~tv~~l~~~v~~~~~~~------~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 2 EPTTSIQIRLADGKRL-VQKFNSSHRVSDVRDFIVNARPEF------AARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred CCeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHhCCCC------CCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 3467899999999766 579999999999999999875411 02345554 557777 56899999999965
No 51
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.35 E-value=0.00059 Score=49.19 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=54.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC--eecCCCCcccccCCCCCCC-CC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYGEV-PG 82 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G--k~LeD~~tLs~~~I~~gd~-~~ 82 (132)
.++|++|=... .|+ ++.+++.||-+||.+++.-+. .| ++.|||.-.. ..|+|.+||++||...... +.
T Consensus 2 ~~f~~VrR~kt-tif-~da~es~tV~elK~~l~gi~~-----~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q 72 (110)
T KOG4495|consen 2 DVFLRVRRHKT-TIF-TDAKESSTVFELKRKLEGILK-----RP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQ 72 (110)
T ss_pred ceeeeeeecce-eEE-eecCccccHHHHHHHHHHHHh-----CC--CcchheeecCHHHHhhccchhhhccccccccccC
Confidence 35677766555 454 699999999999999998743 34 9999997633 5789999999999875543 33
Q ss_pred ceEEEEE
Q 032861 83 GVIIMHV 89 (132)
Q Consensus 83 ~~~tmHl 89 (132)
.+.++-|
T Consensus 73 ~pA~vgL 79 (110)
T KOG4495|consen 73 APATVGL 79 (110)
T ss_pred CCceeee
Confidence 3455543
No 52
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.01 E-value=0.0061 Score=40.52 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=48.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE--ecCeecC---CCCcccccCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE---NNKTVGQCKIPYG 78 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI--y~Gk~Le---D~~tLs~~~I~~g 78 (132)
...|+||+.+|+.+ ...|..++||++|.+.|...... ....+|+ |-.|.+. ++.||+++|+..+
T Consensus 2 ~t~i~iRlpdG~~~-~~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s 70 (77)
T cd01767 2 TTKIQIRLPDGKRL-EQRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNE 70 (77)
T ss_pred cEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCccc
Confidence 46799999999765 57999999999999999977331 3334454 4456674 5899999999843
No 53
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00028 Score=60.37 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=57.6
Q ss_pred cceEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 032861 4 EELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~-i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~ 82 (132)
|..|.+-++..+.+. ...++.+-.+||++||.+++..+| +.|. ..+|||||+||.|.|...|++.-++...
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyP----skpl-~~dqrliYsgkllld~qcl~d~lrkq~k--- 78 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYP----SKPL-ELDQRLIYSGKLLLDHQCLTDWLRKQVK--- 78 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCC----CCCc-hhhHHHHhhccccccchhHHHHHHHHHH---
Confidence 445666666665521 123566788999999999999988 3443 7799999999999999999986554331
Q ss_pred ceEEEEEEecC
Q 032861 83 GVIIMHVVVQP 93 (132)
Q Consensus 83 ~~~tmHlv~r~ 93 (132)
-.+.|+|+..
T Consensus 79 -~Hv~hlvcns 88 (391)
T KOG4583|consen 79 -EHVKHLVCNS 88 (391)
T ss_pred -HHHHHHhcCC
Confidence 1445665553
No 54
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.98 E-value=0.0075 Score=41.65 Aligned_cols=65 Identities=12% Similarity=0.289 Sum_probs=51.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC--eecC--------CCCcccccC
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE--------NNKTVGQCK 74 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G--k~Le--------D~~tLs~~~ 74 (132)
+.+.|.||+.+|+.+ .-.|..++||++|.+.|... + ..++...|+++= |.+. .+.||+++|
T Consensus 3 ~~~~I~iRlp~G~Rl-~rrF~~~~tl~~l~~fv~~~-~-------~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaG 73 (85)
T cd01774 3 DTVKIVFKLPNGTRV-ERRFLFTQSLRVIHDFLFSL-K-------ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAG 73 (85)
T ss_pred ceEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhC-C-------CCCCcEEEecCCCCccccccccccCcCCCCHHHcC
Confidence 568999999999765 56999999999999999643 2 115677887765 7775 477999999
Q ss_pred CCCC
Q 032861 75 IPYG 78 (132)
Q Consensus 75 I~~g 78 (132)
+...
T Consensus 74 L~~s 77 (85)
T cd01774 74 LSNS 77 (85)
T ss_pred CCCc
Confidence 9865
No 55
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.96 E-value=0.0071 Score=41.74 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=50.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEec---C--eecCCCCcccccCCCCC
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPYG 78 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~---G--k~LeD~~tLs~~~I~~g 78 (132)
|+++++-..+.+. .+.|+|...|..+|++|...|. . ..+|||-|. | +.|.+.++|++|||=..
T Consensus 1 iqVtV~q~g~~dl-~l~vnPy~pI~k~K~kI~~~~~-----~---~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~ 68 (80)
T cd01811 1 IQVTVEQTGYSDW-ILRVNPYSPIRKIKEKIRRSRN-----C---SGLQRLSFQEPGGERQLLSSRKSLADYGIFSK 68 (80)
T ss_pred CEEEeeecCCCce-EEEeCCcchHHHHHHHHHHhhC-----c---ccceEEEeecCCcccccccccccHhhhcceec
Confidence 4677777777776 6899999999999999999854 1 669999885 2 36699999999998744
No 56
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.67 E-value=0.02 Score=38.66 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=48.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE--ecCeecCC---CCcccccCCCCC
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG 78 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI--y~Gk~LeD---~~tLs~~~I~~g 78 (132)
....|.||+.+|+.+ ...|..++|+.+|.+.|...... .....|+ |-.|.+.+ +.||+++|+...
T Consensus 3 ~~~~i~iRlp~G~~~-~~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps 72 (79)
T cd01772 3 TETRIQIRLLDGTTL-KQTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS 72 (79)
T ss_pred cEEEEEEECCCCCEE-EEEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCCc
Confidence 467899999999655 56899999999999999977431 1223443 45667743 589999999865
No 57
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.64 E-value=0.022 Score=38.11 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=48.3
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE--ecCeecCC---CCcccccCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG 78 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI--y~Gk~LeD---~~tLs~~~I~~g 78 (132)
+....|.||+.+|+.+ ...|.+++||++|.+.|.+....+ ....+|+ |-.|.|.+ +.||.++++..+
T Consensus 2 ~~~~~I~iRlPdG~ri-~~~F~~~~tl~~v~~~v~~~~~~~-------~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~ 73 (80)
T smart00166 2 SDQCRLQIRLPDGSRL-VRRFPSSDTLRTVYEFVSAALTDG-------NDPFTLNSPFPRRTFTKDDYSKTLLELALLPS 73 (80)
T ss_pred CCeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHcccCC-------CCCEEEEeCCCCcCCccccccCCHHHCCCCCc
Confidence 3568899999999766 579999999999999996543211 2234443 55667753 579999998654
No 58
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0095 Score=52.78 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=55.2
Q ss_pred CCCCeeeeEE-eCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEec
Q 032861 14 YDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (132)
Q Consensus 14 ~~G~~i~~~~-v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv~r 92 (132)
.-|.+.++.+ ++.+.|+..+|+++.+- ++.| |++||+.+.|+.|.|+--+...+|+.| .++||.-.
T Consensus 9 KW~gk~y~v~~l~~d~t~~vlKaqlf~L-----TgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn------~~lmMmGt 75 (473)
T KOG1872|consen 9 KWGGKKYPVETLSTDETPSVLKAQLFAL-----TGVP--PERQKVMVKGGLAKDDVDWGALQIKPN------ETLMMMGT 75 (473)
T ss_pred eecCccccceeccCCCchHHHHHHHHHh-----cCCC--ccceeEEEecccccccccccccccCCC------CEEEeecc
Confidence 3344667777 89999999999999987 3444 999999999999999988888999998 67887544
Q ss_pred C
Q 032861 93 P 93 (132)
Q Consensus 93 ~ 93 (132)
+
T Consensus 76 ~ 76 (473)
T KOG1872|consen 76 A 76 (473)
T ss_pred c
Confidence 3
No 59
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.23 E-value=0.017 Score=38.68 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=46.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE-ecCeecCCCCcccccCCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-SSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI-y~Gk~LeD~~tLs~~~I~~gd 79 (132)
.+.|++....| ....+.+....+|++|-..|.+.+..+....+ .....+|. -.|..|+++.||++++|.+|+
T Consensus 2 ~~rVtv~~~~~-~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~-~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 2 LCRVTVDAGNG-RQVDLALPADVPVAELIPELVELLGLPGDDPP-GHGQWVLARAGGRPLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEEE-TT---EEEEEEETTSBTTHHHHHHHHHS---S---T-T-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred EEEEEEEcCCC-cEEEEEcCCCCcHHHHHHHHHHHhCCccCCCC-CcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence 35677777665 34578999999999999999988542111111 12256776 789999999999999999994
No 60
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.082 Score=38.01 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=58.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
+.|.|+++=-+| ....|.+-.++....|...-.++-. .+.+++|++|.|+.+.+.+|-++++..+||
T Consensus 19 ~hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aYc~r~G-------l~~~s~RFlFdG~rI~~~~TP~~L~mEd~D----- 85 (99)
T KOG1769|consen 19 EHINLKVKGQDG-SVVVFKIKRHTPLKKLMKAYCERQG-------LSMNSLRFLFDGQRIRETHTPADLEMEDGD----- 85 (99)
T ss_pred ceEEEEEecCCC-CEEEEEeecCChHHHHHHHHHHHcC-------CccceEEEEECCcCcCCCCChhhhCCcCCc-----
Confidence 446666655444 4446899999999999888777722 228999999999999999999999999995
Q ss_pred EEEEEEecCCCc
Q 032861 85 IIMHVVVQPSLA 96 (132)
Q Consensus 85 ~tmHlv~r~~~~ 96 (132)
.|-++....++
T Consensus 86 -~Iev~~~q~gG 96 (99)
T KOG1769|consen 86 -EIEVVQEQTGG 96 (99)
T ss_pred -EEEEEeecccC
Confidence 45555444443
No 61
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.78 E-value=0.12 Score=35.26 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=50.0
Q ss_pred CcceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCcccCCCCCcceEEE--ecCeec---CCCCcccccCCC
Q 032861 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIP 76 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~-~p~d~e~~P~~~~~qrLI--y~Gk~L---eD~~tLs~~~I~ 76 (132)
++..+.|.||+.+|+.+ .-.|..++++.+|-..|... .+ +..-+|+ |=-|.+ +-+.||.++|+.
T Consensus 1 ~~~~~~i~iRlP~G~r~-~rrF~~t~~L~~l~~fv~~~~~~---------~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~ 70 (80)
T cd01771 1 GEPISKLRVRTPSGDFL-ERRFLGDTPLQVLLNFVASKGYP---------IDEYKLLSSWPRRDLTQLDPNFTLLELKLY 70 (80)
T ss_pred CCCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCCCCcCCCCCCcHHHcCCC
Confidence 36789999999999655 56999999999999999876 22 3455553 445566 335799999987
Q ss_pred CC
Q 032861 77 YG 78 (132)
Q Consensus 77 ~g 78 (132)
..
T Consensus 71 p~ 72 (80)
T cd01771 71 PQ 72 (80)
T ss_pred CC
Confidence 65
No 62
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.47 E-value=0.11 Score=40.27 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=54.2
Q ss_pred EEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcc-eEEEec-Ceec--CCCCcccccCCCCCC
Q 032861 7 IDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISS-GKIL--ENNKTVGQCKIPYGE 79 (132)
Q Consensus 7 v~l~~rl~~G~---~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~-qrLIy~-Gk~L--eD~~tLs~~~I~~gd 79 (132)
|+|=+...+|- ....+.+++++||.+|+..|.+..| +| +.. +.|.+. |+.| .++..++.+.-...+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~-----~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP-----IP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC-----CC--ccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 46677788883 2346888999999999999999855 22 333 345443 4455 555556655443332
Q ss_pred CCCceEEEEEEecCCCcc
Q 032861 80 VPGGVIIMHVVVQPSLAK 97 (132)
Q Consensus 80 ~~~~~~tmHlv~r~~~~~ 97 (132)
. ...+++++++..|++
T Consensus 74 ~--~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 74 S--DFITLRLSLRLRGGK 89 (162)
T ss_pred C--CceEEEEEEeccCCC
Confidence 1 247899999988874
No 63
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.72 E-value=0.082 Score=35.75 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=45.9
Q ss_pred eCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccC-CCCCCCCCceEEEEEEecCC
Q 032861 24 YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK-IPYGEVPGGVIIMHVVVQPS 94 (132)
Q Consensus 24 v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~-I~~gd~~~~~~tmHlv~r~~ 94 (132)
|+++++|.+|++.+... | +. +.-....|.|.|+.|+|...|++.. +++| .+++|+..|=
T Consensus 1 v~~~d~v~dvrq~L~~~-~---~t--~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~------~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-P---ET--CYLTNFSLEHNGQRLDDFVELSEIEGIKDG------CVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhC-c---cc--cceeEEEEEECCCccCCchhhhhhhCCCCC------cEEEEEecCC
Confidence 46889999999999987 1 11 2277889999999999999998865 6665 6788876653
No 64
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.28 E-value=0.39 Score=33.23 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=54.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
-.|.+-|+--.|. .+.+.++.--+|+.|=..+++... -+..+.+-..+|..-.+++|.+++-|.+|+|.+||
T Consensus 5 ikVTvD~t~y~g~-~yDLrl~d~~pikklIdivwe~~k--is~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 5 IKVTVDFTNYNGG-TYDLRLPDYLPIKKLIDIVWESLK--ISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred EEEEEEeEecCCc-eEEEeccccchHHHHHHHHHHHhh--ccccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence 3577778888884 457888888888888777776611 11223334688999999999999999999999996
No 65
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.017 Score=38.97 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=42.7
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 032861 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (132)
Q Consensus 16 G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~g 78 (132)
|+.+ -+.+.+++||+++|..|+++.... ++.+.|=--+-+++|.-+|++|.|.+|
T Consensus 11 GKKV-RvKCn~dDtiGD~KKliaaQtGT~-------~~kivl~k~~~i~kd~I~L~dyeihdg 65 (73)
T KOG3493|consen 11 GKKV-RVKCNTDDTIGDLKKLIAAQTGTR-------PEKIVLKKWYTIFKDHITLSDYEIHDG 65 (73)
T ss_pred CceE-EEEeCCcccccCHHHHHHHhhCCC-------hhHhHHHhhhhhhhcccceeeEEeccC
Confidence 5444 368899999999999999994422 455555555668899999999999987
No 66
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.61 E-value=0.84 Score=31.57 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=48.6
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCcccCCCCCcceEEE--ecCeec---CCCCcccccCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPY 77 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~-~p~d~e~~P~~~~~qrLI--y~Gk~L---eD~~tLs~~~I~~ 77 (132)
...-.|.||+.+|+.+ .-.|..+.++.+|-..|... .+ ++..+|+ |=-|.+ +-+.||+++|+..
T Consensus 3 ~~~t~i~vRlP~G~r~-~rrF~~~~~L~~v~~fv~~~g~~---------~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P 72 (82)
T cd01773 3 GPKARLMLRYPDGKRE-QIALPEQAKLLALVRHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCP 72 (82)
T ss_pred CCeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCcccCCcccCCCHHHcCCCC
Confidence 3567899999999655 57999999999999999975 22 4555554 334444 4468999999987
Q ss_pred C
Q 032861 78 G 78 (132)
Q Consensus 78 g 78 (132)
.
T Consensus 73 ~ 73 (82)
T cd01773 73 Q 73 (82)
T ss_pred C
Confidence 6
No 67
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.56 Score=33.62 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=52.6
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.|.|++.=-+|+.+ -|.+-.+++-..|-...+++.. ...+++|++|.|+-++=++|-.+++..++|
T Consensus 24 hinLkvv~qd~tel-fFkiKktT~f~klm~af~~rqG-------K~m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 24 HINLKVVDQDGTEL-FFKIKKTTTFKKLMDAFSRRQG-------KNMSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred ccceEEecCCCCEE-EEEEeccchHHHHHHHHHHHhC-------cCcceeEEEEcceecCCCCChhhcCCccch
Confidence 45555544567665 4899999999998888887743 238999999999999999999999998875
No 68
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.14 Score=41.60 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=51.7
Q ss_pred eEEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 032861 6 LIDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (132)
Q Consensus 6 ~v~l~~rl~-~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~g 78 (132)
...++.++. .++++ .+....-+||.++|..+.+.-. + ++-.|+..|+|++|-|...|++|+|..|
T Consensus 145 e~~lk~rlTtT~~d~-~lta~~~Dtv~eik~~L~Aaeg-----~--D~~sQrif~Sg~~l~dkt~LeEc~iekg 210 (231)
T KOG0013|consen 145 EPILKLRLTTTREDF-WLTAPHYDTVGEIKRALRAAEG-----V--DPLSQRIFFSGGVLVDKTDLEECKIEKG 210 (231)
T ss_pred CcchHHHhhhhhhhe-eecccCcCcHHHHHHHHHHhhc-----c--chhhheeeccCCceeccccceeeeecCC
Confidence 345566666 55444 5777888999999999998722 1 1779999999999999999999999977
No 69
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=89.53 E-value=0.95 Score=39.43 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=51.1
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEe--cCeec-CCCCcccccCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKIL-ENNKTVGQCKIPYG 78 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy--~Gk~L-eD~~tLs~~~I~~g 78 (132)
+.+-+|.||+.+|+.+ ...|+.+-||.+|+..|...=|.+ +...+-|++ =-|.| +|+.||++.++.+.
T Consensus 303 ~PtTsIQIRLanG~Rl-V~~fN~sHTv~DIR~fI~~aRp~~------~~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRL-VLKFNHSHTVSDIREFIDTARPGD------SSTYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred CCcceEEEEecCCcee-eeeccCcccHHHHHHHHHhcCCCC------cCCceeeeecCCCcccCCcchhHHhccchhh
Confidence 5567899999999766 579999999999999999875422 122344433 34566 89999999999865
No 70
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=86.81 E-value=2.1 Score=31.82 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=39.1
Q ss_pred EeCC-cchHHHHHHHHHhhCCCCcccCC---CCCcceEEEecC-----------------eec---CCCCcccccCCCCC
Q 032861 23 RYSS-ASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISSG-----------------KIL---ENNKTVGQCKIPYG 78 (132)
Q Consensus 23 ~v~~-s~TV~~LK~~I~~~~p~d~e~~P---~~~~~qrLIy~G-----------------k~L---eD~~tLs~~~I~~g 78 (132)
.++. +.||++|++.+.+.++....-.| ..-+.+|+++.. -+| +++.||.+|||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 5665 89999999999998554322122 235666766542 467 78889999999865
No 71
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=2.3 Score=34.62 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=43.8
Q ss_pred EEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEE-EecC-----eec-CCCCcccccCCCCCCCCCceEEEEEEec
Q 032861 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSG-----KIL-ENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (132)
Q Consensus 22 ~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrL-Iy~G-----k~L-eD~~tLs~~~I~~gd~~~~~~tmHlv~r 92 (132)
-.++++.||.++|.+++-... -+ ++.++| +|.| -.| +++..|..|+..+| ..+|++=.
T Consensus 17 kr~~~~ltl~q~K~KLe~~~G-----~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg------~rihviD~ 81 (234)
T KOG3206|consen 17 KRLSNSLTLAQFKDKLELLTG-----TE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDG------LRIHVIDS 81 (234)
T ss_pred hhcCCcCcHHHHHhhhhhhhC-----CC--ccceEEEEEcCCCceeeeccCCcccccccCCCCc------eEEEEEec
Confidence 467899999999999998733 22 777877 5666 245 67788888988888 77887544
No 72
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=84.69 E-value=4.8 Score=26.54 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=37.7
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 032861 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (132)
Q Consensus 14 ~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~g 78 (132)
.++ ....+.+.|++++.+|=+..-.++. . ++++=.|.|.++.|+-+.++.-.|+.+|
T Consensus 4 ~~~-rr~~vkvtp~~~l~~VL~eac~k~~-----l--~~~~~~L~h~~k~ldlslp~R~snL~n~ 60 (65)
T PF11470_consen 4 YNF-RRFKVKVTPNTTLNQVLEEACKKFG-----L--DPSSYDLKHNNKPLDLSLPFRLSNLPNN 60 (65)
T ss_dssp TTS--EEEE---TTSBHHHHHHHHHHHTT---------GGG-EEEETTEEESSS-BHHHH---SS
T ss_pred cCC-cEEEEEECCCCCHHHHHHHHHHHcC-----C--CccceEEEECCEEeccccceeecCCCCC
Confidence 445 3456899999999998877777733 1 1778899999999999999999999988
No 73
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=84.55 E-value=6.9 Score=25.21 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=37.4
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 16 G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
|.....+++++..||.+|.+.+.+++|.. .... .....+..+|+... .+.-+.+||
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~~~--~~~~~v~vNg~~v~-----~~~~l~~gD 69 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGL-LEEL--LARVRIAVNGEYVR-----LDTPLKDGD 69 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchH-HHhh--hhcEEEEECCeEcC-----CCcccCCCC
Confidence 43444567777899999999999987620 0111 34567777888886 335577774
No 74
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=84.21 E-value=8.9 Score=24.74 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=48.1
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEe----c--CeecCCCCcccccCCCCCCCCCce
Q 032861 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS----S--GKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 11 ~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy----~--Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
+++.||+ ...+++++++|+.+|=+.|.+.+. +. ..+..=|.| . ...|+.+++|.+.....+ .+
T Consensus 1 V~llD~~-~~~~~v~~~~t~~~l~~~v~~~l~-----l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~----~~ 69 (80)
T PF09379_consen 1 VRLLDGT-TKTFEVDPKTTGQDLLEQVCDKLG-----LK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN----PP 69 (80)
T ss_dssp EEESSEE-EEEEEEETTSBHHHHHHHHHHHHT-----TS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS----SS
T ss_pred CCCcCCC-cEEEEEcCCCcHHHHHHHHHHHcC-----CC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCC----CC
Confidence 5678995 457999999999999999999821 10 145555655 2 347788888888766622 23
Q ss_pred EEEEEEec
Q 032861 85 IIMHVVVQ 92 (132)
Q Consensus 85 ~tmHlv~r 92 (132)
.++++-++
T Consensus 70 ~~l~frvk 77 (80)
T PF09379_consen 70 FTLYFRVK 77 (80)
T ss_dssp EEEEEEES
T ss_pred EEEEEEEE
Confidence 66776654
No 75
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=82.48 E-value=12 Score=24.89 Aligned_cols=58 Identities=16% Similarity=0.296 Sum_probs=37.0
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCcc------cCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKT------IVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 16 G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e------~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
|.....++++ ..||.+|.+.+.+++|..+. +.. -....+..+|+..+++.. ..+++||
T Consensus 14 g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~--~~~~~v~vN~~~v~~~~~---~~l~dgd 77 (88)
T TIGR01687 14 GKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGL--VPNVIILVNGRNVDWGLG---TELKDGD 77 (88)
T ss_pred CCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcc--cccEEEEECCEecCccCC---CCCCCCC
Confidence 4333346666 88999999999999773211 111 234677778888765432 4577774
No 76
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=79.95 E-value=11 Score=34.25 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=48.0
Q ss_pred EEEEEEeCC-CCeeeeEEeCCcchHHHHHHHHHhh-CCCCc--ccCCCCCcceEEEe-c---Ce-ecCCCC---------
Q 032861 7 IDIKFRLYD-GSDIGPFRYSSASTVDMLKQRIVSD-WPKGK--TIVPKAVTEIKLIS-S---GK-ILENNK--------- 68 (132)
Q Consensus 7 v~l~~rl~~-G~~i~~~~v~~s~TV~~LK~~I~~~-~p~d~--e~~P~~~~~qrLIy-~---Gk-~LeD~~--------- 68 (132)
+.|.+...+ |..-.++.|=..+||.++|+||-.. |. +. -.+| .++++-|-+ . |+ +|.|..
T Consensus 190 ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk-~~p~S~rp-~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~w 267 (539)
T PF08337_consen 190 LTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYK-NTPYSQRP-RADDVDLEWRQGRGGRLILQDEDSTSKVEGGW 267 (539)
T ss_dssp EEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTT-TS-GGGS---GGGEEEEEEETTSEEEEESSSSTTSEEETTE
T ss_pred EEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHc-CCCCCCCC-CccccceeeecCCCCcccccCCCCCcccCCCc
Confidence 445544332 2333467887899999999999988 32 21 1233 367777733 2 33 666543
Q ss_pred ----cccccCCCCCCCCCceEEEEEEecCC
Q 032861 69 ----TVGQCKIPYGEVPGGVIIMHVVVQPS 94 (132)
Q Consensus 69 ----tLs~~~I~~gd~~~~~~tmHlv~r~~ 94 (132)
||+.|+|++| ++|-|+.+..
T Consensus 268 krLNTL~HY~V~dg------a~vaLv~k~~ 291 (539)
T PF08337_consen 268 KRLNTLAHYKVPDG------ATVALVPKQH 291 (539)
T ss_dssp EE--BHHHHT--TT------EEEEEEES--
T ss_pred eEeccHhhcCCCCC------ceEEEeeccc
Confidence 6788999999 7888877753
No 77
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=76.64 E-value=9.2 Score=24.85 Aligned_cols=45 Identities=13% Similarity=0.295 Sum_probs=33.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEec
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~ 60 (132)
+.++++. |.++..+.++++.|-.+|+.+|...++ ...+..+|-|.
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~-------~~~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFG-------LDNQSFTLKYQ 46 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhC-------CCCCCeEEEEE
Confidence 3455555 447888999999999999999999976 11356677665
No 78
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=74.05 E-value=14 Score=23.42 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=38.7
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
...+....||++|.+.+..++|.-. . .....+..+|+...+ . -.+..+++||
T Consensus 15 ~~~~~~~~tv~~ll~~l~~~~p~~~---~--~~~~~v~vN~~~v~~-~-~~~~~l~~gD 66 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAERYPELA---L--RDRVAVAVNGEIVPD-D-GLDTPLKDGD 66 (77)
T ss_dssp EEEESSTSBHHHHHHHHCHHTGGGH---T--TTTEEEEETTEEEGG-G-TTTSBEETTE
T ss_pred EEecCCCCcHHHHHHHHHhhccccc---c--CccEEEEECCEEcCC-c-cCCcCcCCCC
Confidence 4678889999999999999975111 1 478899999999988 3 3345577773
No 79
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=72.63 E-value=24 Score=23.10 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=37.5
Q ss_pred CCCeeeeEEeCCc-chHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 15 DGSDIGPFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 15 ~G~~i~~~~v~~s-~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.|.....+++++. .||.+|.+.+.++.|.-.+ ....+.+..+|+...+ +.-+++||
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~----~~~~~~v~vn~~~v~~-----~~~l~dgD 69 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPELAA----SRGQVMVAVNEEYVTD-----DALLNEGD 69 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCchhhh----hccceEEEECCEEcCC-----CcCcCCCC
Confidence 3444445778766 8999999999998761111 1245677788888875 35677774
No 80
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=71.97 E-value=6.7 Score=32.92 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=44.1
Q ss_pred EEeCCcchHHHHHHHHHhh-CCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEecCCCcc
Q 032861 22 FRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAK 97 (132)
Q Consensus 22 ~~v~~s~TV~~LK~~I~~~-~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv~r~~~~~ 97 (132)
.+.+.+.||.++++.+..+ .. -.+.++ -...|+--.|+.|-|+.+|++++...| .++ .++-.|++
T Consensus 17 ~~~s~~~ti~d~~~~~~~~~~k-~~~~~~--r~tlr~e~kgkpl~~~s~l~e~~~~s~------~~i--~vKDLGpQ 82 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAKNLK-ITPYRI--RLTLRVEPKGKPLIDNSKLQEYGDGSG------ATI--YVKDLGPQ 82 (297)
T ss_pred ecCCCCCcHHHHHHHHHHhhhc-cCccch--hheeeccCCCccccchhHHHHhccCCC------CEE--EEeccCCc
Confidence 5667788999999888776 11 011222 344555667999999999999999877 344 34555554
No 81
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=71.04 E-value=14 Score=25.25 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=27.0
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 032861 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (132)
Q Consensus 10 ~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p 42 (132)
++|..-|.++.-+.+.++++..+|++.|+++++
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 445544557888999999999999999999965
No 82
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=70.04 E-value=15 Score=23.75 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=33.6
Q ss_pred EEEEEEeCCCCeeee-EEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC
Q 032861 7 IDIKFRLYDGSDIGP-FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (132)
Q Consensus 7 v~l~~rl~~G~~i~~-~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G 61 (132)
+.+++...++ +.- +.+.++.|..+|+++|++.++ ......+|-|..
T Consensus 2 ~~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~-------~~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGGD--IRRIISLPSDVSFDDLRSKIREKFG-------LLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETTE--EEEEEEECSTSHHHHHHHHHHHHHT-------TSTSSEEEEEEE
T ss_pred EEEEEEECCe--eEEEEEcCCCCCHHHHHHHHHHHhC-------CCCccEEEEeeC
Confidence 4556655554 334 789999999999999999976 114678887754
No 83
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=69.93 E-value=12 Score=27.82 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=30.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~ 41 (132)
.+.++|.+.+|+.. .+.+++++||++|-+.+..++
T Consensus 3 ~~~~~V~l~dg~~~-~~~~~~~~t~~ev~~~v~~~~ 37 (207)
T smart00295 3 PRVLKVYLLDGTTL-EFEVDSSTTAEELLETVCRKL 37 (207)
T ss_pred cEEEEEEecCCCEE-EEEECCCCCHHHHHHHHHHHh
Confidence 47899999999654 689999999999999999984
No 84
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=69.01 E-value=16 Score=25.47 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=28.4
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p 42 (132)
.+|+...| .+.-+.+.|++++.+|++.|++++.
T Consensus 3 FK~~~~~G-rvhRf~~~~s~~~~~L~~~I~~Rl~ 35 (86)
T cd06409 3 FKFKDPKG-RVHRFRLRPSESLEELRTLISQRLG 35 (86)
T ss_pred EEeeCCCC-CEEEEEecCCCCHHHHHHHHHHHhC
Confidence 57888999 4556899999999999999999965
No 85
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=68.37 E-value=21 Score=23.19 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=35.6
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
+++++.+...-..+++++..||.+|-+.+. ++ .....+..+|+++.. +.-+++||
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l~--~~---------~~~v~v~vNg~iv~~-----~~~l~~gD 59 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAVG--FN---------TESAIAKVNGKVALE-----DDPVKDGD 59 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHcC--CC---------CccEEEEECCEECCC-----CcCcCCCC
Confidence 444443332223567888899999887763 22 566778889998853 44577775
No 86
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=66.84 E-value=1.8 Score=36.73 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhh-CCCC----cccCCCCCcceE-----EEecCeecCCCCcccccCCC
Q 032861 27 ASTVDMLKQRIVSD-WPKG----KTIVPKAVTEIK-----LISSGKILENNKTVGQCKIP 76 (132)
Q Consensus 27 s~TV~~LK~~I~~~-~p~d----~e~~P~~~~~qr-----LIy~Gk~LeD~~tLs~~~I~ 76 (132)
++||.++|+.++++ .+.+ .+.+| .+-++ |+|.-|.+-|++||.+..-.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp ------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHHHhc
Confidence 68999999999996 3322 35666 88888 99999999999999987533
No 87
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=66.01 E-value=12 Score=24.33 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=31.1
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.+++++.+|...||..+... ++ -+||.|-+.+++.. +++||
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~-----------~D--I~I~NGF~~~~d~~-----L~e~D 49 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPD-----------AD--IVILNGFPTKEDIE-----LKEGD 49 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCC-----------CC--EEEEcCcccCCccc-----cCCCC
Confidence 46888999999999887743 33 57999998877754 55664
No 88
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=65.99 E-value=38 Score=23.93 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=40.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCc-ceEEEecCe--ecCCCCcccccC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLISSGK--ILENNKTVGQCK 74 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~-~qrLIy~Gk--~LeD~~tLs~~~ 74 (132)
.+-|.+...+..+...+.+++++|+.+|-+.+-.+. .........++ +--|==.|+ .|-.+..|.++.
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~ 87 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFE 87 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechH
Confidence 455666666666767899999999999998887762 11111111122 444434444 555566666654
No 89
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=64.89 E-value=16 Score=24.69 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=23.1
Q ss_pred EEEeCCCCeeeeEEeC-CcchHHHHHHHHHhh
Q 032861 10 KFRLYDGSDIGPFRYS-SASTVDMLKQRIVSD 40 (132)
Q Consensus 10 ~~rl~~G~~i~~~~v~-~s~TV~~LK~~I~~~ 40 (132)
.+|..+..+...+.|+ ...||.+||..|.++
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~ 33 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEK 33 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHH
Confidence 4555677677777785 567999999999877
No 90
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=63.87 E-value=22 Score=23.35 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=34.8
Q ss_pred CCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 15 DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 15 ~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.|.+...++++...||++|.+.+.++.|.-.+. -....+..+|+...++ .-+.+||
T Consensus 16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~----~~~~~vavN~~~v~~~-----~~l~dgD 71 (82)
T PLN02799 16 TGVSDMTLELPAGSTTADCLAELVAKFPSLEEV----RSCCVLALNEEYTTES-----AALKDGD 71 (82)
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHChhHHHH----hhCcEEEECCEEcCCC-----cCcCCCC
Confidence 344445678888999999999998875410000 0123466777776433 4467774
No 91
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=63.22 E-value=11 Score=26.28 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCC--Cc---ccCCCCCcceEEEecCeecCCCCcccccC
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPK--GK---TIVPKAVTEIKLISSGKILENNKTVGQCK 74 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~--~p~--d~---e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~ 74 (132)
.-|+|-..||+.. .+.|++.+|++++-+.+.++ +.. +| |..| -++--|.++|.+.|-++-
T Consensus 3 ~vvkv~~~Dg~sK-~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P-------~l~lER~~EDHE~vvdvl 69 (85)
T cd01787 3 QVVKVYSEDGASK-SLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLP-------HLQLERLFEDHELVVEVL 69 (85)
T ss_pred eEEEEEecCCCee-EEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecc-------hhhhhhhccchHHHHHHH
Confidence 4578889999655 68999999999999999988 221 23 4554 234567888888777653
No 92
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=61.19 E-value=54 Score=22.95 Aligned_cols=72 Identities=11% Similarity=0.205 Sum_probs=42.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC--eecCCCCcccccCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYG 78 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G--k~LeD~~tLs~~~I~~g 78 (132)
.+-|.-+.-..--...+-++..+|+.++-++++..-= +.--.|.+-..+|+-+.| +.+..+.|+++.||..-
T Consensus 3 ~fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~HsV-GrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~ 76 (85)
T PF06234_consen 3 LFPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHSV-GRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPM 76 (85)
T ss_dssp EEEEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTTT-TTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TT
T ss_pred ccceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhhc-ceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcc
Confidence 3444444444322334678999999999999997610 000111124478888999 99999999999999854
No 93
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=60.44 E-value=14 Score=26.56 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=26.8
Q ss_pred EEEecCeecCCCCcccccCCCCCCCCCceEEEEEEecCCCccccc
Q 032861 56 KLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKT 100 (132)
Q Consensus 56 rLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv~r~~~~~~~~ 100 (132)
.|-|+||.|..+.+|++| +..++- +-+++-|..+-.+++..+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEK--tKiivKl~~~g~g~P~RE 44 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEK--TKIIVKLQKRGQGPPPRE 44 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcc--eeEEEEeccCCCCCCCCC
Confidence 477999999999999998 544443 223444444444444443
No 94
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=59.57 E-value=21 Score=24.60 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=25.0
Q ss_pred EEEeCCCCeeeeEEeCC--cchHHHHHHHHHhhCC
Q 032861 10 KFRLYDGSDIGPFRYSS--ASTVDMLKQRIVSDWP 42 (132)
Q Consensus 10 ~~rl~~G~~i~~~~v~~--s~TV~~LK~~I~~~~p 42 (132)
++|..-|.++.-+.+++ +++-.+|++.|+..+.
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~ 36 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG 36 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 34444344666789988 7799999999999965
No 95
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=58.06 E-value=10 Score=25.66 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=38.2
Q ss_pred EEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEE-EecCeecCCCCcccccCCCCCCCCCceEEEEEEecCC
Q 032861 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPS 94 (132)
Q Consensus 22 ~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrL-Iy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv~r~~ 94 (132)
++..+..-.-.+.++-.++- +.-+.| ++.-.| =-+|..|+-++.+++||+.++ .++++.+++-
T Consensus 10 VEANvnaPLh~v~akALe~s--gNvgQP--~ENWElkDe~G~vlD~~kKveD~Gftng------vkLFLsLKAG 73 (76)
T PF10790_consen 10 VEANVNAPLHPVRAKALEQS--GNVGQP--PENWELKDESGQVLDVNKKVEDFGFTNG------VKLFLSLKAG 73 (76)
T ss_pred eecCCCCcchHHHHHHHhhc--cccCCC--cccceeeccCCcEeeccchhhhcccccc------ceEEEEeecc
Confidence 44455555555555554440 111222 332222 147889999999999999998 7888877643
No 96
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=56.95 E-value=26 Score=22.51 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=25.2
Q ss_pred EEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhhCC
Q 032861 8 DIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWP 42 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~-~s~TV~~LK~~I~~~~p 42 (132)
.++++..++ +..+.+. .+.|..+|+++|.+.++
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~ 35 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFG 35 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhC
Confidence 345555544 4567777 89999999999999976
No 97
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=56.57 E-value=32 Score=26.54 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=38.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~-s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~g 78 (132)
.++|++. -| .| .++++. .+.+..+++...+.+| .+.+ |+-|+++....|++|| ++-|
T Consensus 67 ~veL~V~--vG-ri-~lele~~~~~ie~I~~iCee~lp-------f~y~----i~~G~f~r~~~TvtDY-~KyG 124 (153)
T PF02505_consen 67 EVELTVK--VG-RI-ILELEDEEDVIEKIREICEEVLP-------FGYD----IKEGKFIRTKPTVTDY-AKYG 124 (153)
T ss_pred EEEEEEE--Ee-EE-EEEecCcHHHHHHHHHHHHHhCC-------CceE----eeeeEEeccCCchhhh-hhcC
Confidence 3555553 45 33 468877 7788888888877765 1122 4579999999999997 4444
No 98
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=55.24 E-value=27 Score=22.00 Aligned_cols=30 Identities=33% Similarity=0.219 Sum_probs=24.6
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~ 41 (132)
|++.+.+|+ ..+++...|+.++-..|...+
T Consensus 1 I~v~lpdG~---~~~~~~g~T~~d~A~~I~~~l 30 (60)
T PF02824_consen 1 IRVYLPDGS---IKELPEGSTVLDVAYSIHSSL 30 (60)
T ss_dssp EEEEETTSC---EEEEETTBBHHHHHHHHSHHH
T ss_pred CEEECCCCC---eeeCCCCCCHHHHHHHHCHHH
Confidence 567789994 457999999999999998774
No 99
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=53.89 E-value=41 Score=23.23 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=28.9
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCe
Q 032861 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (132)
Q Consensus 20 ~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk 62 (132)
..+.+.++.+..+|+++|.++.. +| +++++|-|.-.
T Consensus 13 IaIrvp~~~~y~~L~~ki~~kLk-----l~--~e~i~LsYkde 48 (80)
T cd06406 13 VAIQVARGLSYATLLQKISSKLE-----LP--AEHITLSYKSE 48 (80)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-----CC--chhcEEEeccC
Confidence 46899999999999999999932 22 78889988654
No 100
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=53.10 E-value=42 Score=29.42 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=43.4
Q ss_pred eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCC--CCcccccCCCCCC
Q 032861 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN--NKTVGQCKIPYGE 79 (132)
Q Consensus 18 ~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD--~~tLs~~~I~~gd 79 (132)
..+++.+........++..++..+. ++ .+..-|||+++.|.+ .++|.+||+..++
T Consensus 13 ~~~~i~v~~dg~L~nl~aL~~~d~g-----~~--~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 13 KKFPIPVTTDGELNNLAALCWKDTG-----IV--YDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred eeeccccccccchhhHHHHHHHHhC-----cc--cchhhcccCCCccccchhhhhhhcccccce
Confidence 3446788888888999999887732 33 778889999999954 5788899999884
No 101
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=52.77 E-value=63 Score=22.52 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=28.2
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p 42 (132)
|++++.-+.++..+.++++.+-.+|.++|.+++.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~ 36 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFG 36 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5666664447888999999999999999999975
No 102
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=50.17 E-value=49 Score=22.06 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=26.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~ 40 (132)
+++-+++| ....+.+-|++||.++=+++-++
T Consensus 2 ~~V~LPng-~~t~V~vrpg~ti~d~L~~~c~k 32 (72)
T cd01760 2 CRVYLPNG-QRTVVPVRPGMSVRDVLAKACKK 32 (72)
T ss_pred EEEECcCC-CeEEEEECCCCCHHHHHHHHHHH
Confidence 56778999 45578999999999998888887
No 103
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=48.37 E-value=34 Score=21.57 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=33.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.++++...||.+|.+.+. ++ .....+..+|+++..+.- ++.-+++||
T Consensus 8 ~~~~~~~~tv~~ll~~l~--~~---------~~~i~V~vNg~~v~~~~~-~~~~L~~gD 54 (65)
T cd00565 8 PREVEEGATLAELLEELG--LD---------PRGVAVALNGEIVPRSEW-ASTPLQDGD 54 (65)
T ss_pred EEEcCCCCCHHHHHHHcC--CC---------CCcEEEEECCEEcCHHHc-CceecCCCC
Confidence 468888899999987765 23 677888899998854421 224578885
No 104
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=47.23 E-value=53 Score=29.62 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=45.9
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCc--ccCC--CCCcceEEEecCeecCCCCcccccCCCCC
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVP--KAVTEIKLISSGKILENNKTVGQCKIPYG 78 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~--e~~P--~~~~~qrLIy~Gk~LeD~~tLs~~~I~~g 78 (132)
++||-..|... +++.++++.+.|-++|.+.+..+. |.+- ..++.|-.||+ +..++|+.++|+..|
T Consensus 3 ~rfRsk~G~~R--ve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s---~l~dqt~~dlGL~hG 71 (571)
T COG5100 3 FRFRSKEGQRR--VEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFS---LLKDQTPDDLGLRHG 71 (571)
T ss_pred EEEecCCCcee--eeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeee---cccccChhhhccccC
Confidence 78999999543 699999999999999988854331 1110 11333444443 467789999999999
No 105
>PRK06437 hypothetical protein; Provisional
Probab=47.06 E-value=76 Score=20.44 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=32.1
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 20 ~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
..++++...||.+|=+.+. ++ +...-+..+|+++. .++-+++||
T Consensus 13 ~~~~i~~~~tv~dLL~~Lg--i~---------~~~vaV~vNg~iv~-----~~~~L~dgD 56 (67)
T PRK06437 13 KTIEIDHELTVNDIIKDLG--LD---------EEEYVVIVNGSPVL-----EDHNVKKED 56 (67)
T ss_pred eEEEcCCCCcHHHHHHHcC--CC---------CccEEEEECCEECC-----CceEcCCCC
Confidence 3578888888888765542 33 77888899999997 445677785
No 106
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=45.55 E-value=27 Score=29.33 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=38.1
Q ss_pred EEeCCcchHHHHHHHHHhhC---CCCcc-----cCCCCCcceEEEecCeecCCCCcccccC
Q 032861 22 FRYSSASTVDMLKQRIVSDW---PKGKT-----IVPKAVTEIKLISSGKILENNKTVGQCK 74 (132)
Q Consensus 22 ~~v~~s~TV~~LK~~I~~~~---p~d~e-----~~P~~~~~qrLIy~Gk~LeD~~tLs~~~ 74 (132)
+....---|..|++.|.+++ |.-.. ..+.+.+.+.|+|.|+.|+.+-||+..+
T Consensus 252 L~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 252 LNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred ecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 34444457889999999997 11111 1213388899999999999999999876
No 107
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=45.48 E-value=69 Score=24.66 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=37.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCccccc
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~ 73 (132)
.++|++ .-| .| .++++....+..+++...+.+|=+ - -|.-|+++.+..|++||
T Consensus 66 ~veL~V--~VG-rI-~le~~~~~~i~~I~eiC~e~~pF~-------y----~i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 66 DVELRV--QVG-RI-ILELEDEDIVEEIEEICKEMLPFG-------Y----EVRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEE--EEe-EE-EEEecCHHHHHHHHHHHHhhCCCc-------e----EeeeeeEeecCCchhhh
Confidence 355555 345 33 367778888999998888876611 1 25679999999999997
No 108
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=44.62 E-value=65 Score=30.57 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=56.5
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEE
Q 032861 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (132)
Q Consensus 10 ~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHl 89 (132)
.|-+.+++ +..+-++++.|+..+++.|..+ +++| .+.|-|+|.|...-..+ .++| +.+| .+ .-+.+
T Consensus 318 iFs~~~~~-~~~~~~~~~ntl~~~~~~I~~~-----Tgip--e~~qeLL~e~~~~h~~~-~~Q~-~~dg-~~---~~l~l 383 (732)
T KOG4250|consen 318 IFSMVQAT-SHEYYVHADNTLHSLIERISKQ-----TGIP--EGKQELLFEGGLSHLED-SAQC-IPDG-LD---SPLYL 383 (732)
T ss_pred EEeeccce-EEEEecChhhhHHHHHHHHHHh-----hCCC--CccceeeeecCccccCc-cccc-CCCC-CC---CceEE
Confidence 35556664 4467889999999999999988 3444 88999999987553222 2233 3334 21 22444
Q ss_pred EecCCCccccccceeeEEEEeeecCCCCcee
Q 032861 90 VVQPSLAKTKTVHFGVMLELDWTNTNPDIHV 120 (132)
Q Consensus 90 v~r~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 120 (132)
+...... .. .+-.+.++.....|.|-.
T Consensus 384 ~~~~~~~--v~--~~~~~~r~~p~~~~~i~~ 410 (732)
T KOG4250|consen 384 VSDQDKN--VD--ERKILKRSLPKVVPYIDQ 410 (732)
T ss_pred EecCCCc--ch--hhcccccCCCCCccchhc
Confidence 4432221 11 345566677777776643
No 109
>smart00455 RBD Raf-like Ras-binding domain.
Probab=42.93 E-value=77 Score=20.75 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=35.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCcccCCCCCcceEEEecC--eecC
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSG--KILE 65 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~--~p~d~e~~P~~~~~qrLIy~G--k~Le 65 (132)
.++-+++|.. ..+.+-|+.||.++=+.+-++ +. ++...|...| +.|+
T Consensus 2 ~~v~LP~~~~-~~V~vrpg~tl~e~L~~~~~kr~l~---------~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQR-TVVKVRPGKTVRDALAKALKKRGLN---------PECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCE-EEEEECCCCCHHHHHHHHHHHcCCC---------HHHEEEEEcCCCccee
Confidence 4677899954 468999999999998888888 43 7777776655 4553
No 110
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=42.63 E-value=1.1e+02 Score=21.66 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=35.6
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEecCCCc
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv~r~~~~ 96 (132)
...++=...++.||..++.++. .+-+.=.+......|+.+++|-+-+++-. +.+.+.+-+...++
T Consensus 6 ~q~mDI~epl~~Lk~lLe~Rl~-------~~L~~~~f~LQD~~L~~~k~L~dQcVqge----GlVQlnvQi~s~~~ 70 (88)
T PF11620_consen 6 MQHMDIREPLSTLKKLLERRLG-------ISLSDYEFWLQDIQLEPHKSLVDQCVQGE----GLVQLNVQIKSNQG 70 (88)
T ss_dssp EEEEESSSBGGGHHHHSHHHH--------S--SS-EEEETTEE--TTSBTTTSS--------SEEEEEEEEE--TT
T ss_pred EEEEecCCcHHHHHHHHHHhhC-------CCcCCCeEEeccceecCCccHHHhhcccc----CEEEEEEEEEecCC
Confidence 3455556678999999998843 11444455556767999999999888744 33445554444433
No 111
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=41.73 E-value=78 Score=24.60 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=38.9
Q ss_pred EEEeCCCCeeeeEEeCCcc-hHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 10 KFRLYDGSDIGPFRYSSAS-TVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 10 ~~rl~~G~~i~~~~v~~s~-TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
-+++..| .| .++++..+ +++.+++...+.+|=+ .+ ++-|+++....|+.+| ++-|+
T Consensus 77 eL~VkvG-ri-~~eie~e~~~~e~ie~ic~e~lPf~-------y~----v~vG~F~r~kpTVTDy-~KyG~ 133 (165)
T COG4055 77 ELKVKVG-RI-ILEIEDEDETMEKIEEICDEMLPFG-------YE----VRVGKFTRRKPTVTDY-IKYGE 133 (165)
T ss_pred EEEEEee-EE-EEEecCcHhHHHHHHHHHHHhCCCc-------ee----eeeeeeeccCCcchhh-hhhCc
Confidence 3444566 44 46887775 8888888777777622 21 5779999999999998 55553
No 112
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.95 E-value=1.1e+02 Score=22.74 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=33.7
Q ss_pred EEeCC-cchHHHHHHHHHhhCCCCcccCC---CCCcceEEEec----------------C-eec-CCCCcccccCCCCC
Q 032861 22 FRYSS-ASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISS----------------G-KIL-ENNKTVGQCKIPYG 78 (132)
Q Consensus 22 ~~v~~-s~TV~~LK~~I~~~~p~d~e~~P---~~~~~qrLIy~----------------G-k~L-eD~~tLs~~~I~~g 78 (132)
.+++- +.||.+++..|.+.++-+.--.| -.-+.+++++. . -.| ++++||+.|||.+.
T Consensus 27 Hd~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenE 105 (127)
T KOG4147|consen 27 HDVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENE 105 (127)
T ss_pred eccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcc
Confidence 35554 77999998888888663321111 11233443332 2 244 37789999999864
No 113
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=38.64 E-value=33 Score=30.90 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=43.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeec---CCCCcccccCCCCC
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL---ENNKTVGQCKIPYG 78 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~L---eD~~tLs~~~I~~g 78 (132)
+.++|.|||.||+.+. -.|..+.-...+|+.+...-.-+.. .=.+---|--|.. +-++||.++.+...
T Consensus 313 d~~rLqiRLPdGssft-e~Fps~~vL~~vr~yvrq~~~i~~g-----~f~LatpyPRReft~eDy~KtllEl~L~ps 383 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFT-EKFPSTSVLRMVRDYVRQNQTIGLG-----AFDLATPYPRREFTDEDYDKTLLELRLFPS 383 (506)
T ss_pred ceeEEEEecCCccchh-hcCCcchHHHHHHHHHHhccccccc-----ceeeccccccccccchhhhhhHHHhccCCc
Confidence 5689999999998774 4888888788999999865111110 1111112444444 34578888888765
No 114
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=37.28 E-value=1.7e+02 Score=25.81 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCc--ccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~--e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
.++++.-.+ ....+-+..+..|.+|=-.|.+....+- ++.+....-+|+ .|..|+-+.||.+.++.+||
T Consensus 3 ~RVtV~~~~--~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~--gG~pL~~~~sL~~~gV~DG~----- 73 (452)
T TIGR02958 3 CRVTVLAGR--RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARA--GGSPLDPDASLAEAGVRDGE----- 73 (452)
T ss_pred EEEEEeeCC--eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecC--CCCCCCCCCCHHHcCCCCCC-----
Confidence 345554443 3456777888899998888877743211 111111222333 67799999999999999994
Q ss_pred EEEEEEec
Q 032861 85 IIMHVVVQ 92 (132)
Q Consensus 85 ~tmHlv~r 92 (132)
++++..+
T Consensus 74 -~L~L~p~ 80 (452)
T TIGR02958 74 -LLVLVPA 80 (452)
T ss_pred -eEEEeeC
Confidence 5777654
No 115
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=37.03 E-value=34 Score=23.32 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.4
Q ss_pred eEEeCCcchHHHHHHHHHhh
Q 032861 21 PFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~ 40 (132)
+++++.++|+.++|+.++++
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEETT-BHHHHHHHHHHH
T ss_pred EEEccCcCcHHHHHHHHHHH
Confidence 57889999999999999988
No 116
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=35.33 E-value=1.6e+02 Score=21.78 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=37.4
Q ss_pred ceEEEEEEeCCCCeee---eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeec
Q 032861 5 ELIDIKFRLYDGSDIG---PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~---~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~L 64 (132)
.+|.|+||-.++.-+. .+.++++.|++.+-..|..... .+ ++++-++|-..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lk-----l~--as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLK-----LQ--ASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhC-----Cc--ccCeEEEEEcCcc
Confidence 4688999988774332 3789999999999888887722 11 6777777655433
No 117
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=34.33 E-value=1.6e+02 Score=20.55 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=33.3
Q ss_pred eeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE--ec--Ce-ec-CCCCcccccCCCCC
Q 032861 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SS--GK-IL-ENNKTVGQCKIPYG 78 (132)
Q Consensus 19 i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI--y~--Gk-~L-eD~~tLs~~~I~~g 78 (132)
..+..|+..+||+.+...+.+.+. + ..+-||= |. +. .| +-..||++++|..|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~-----i---~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~g 72 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFN-----I---QEETRLWNKYSENSYELLNNPEITVEDAGLYDG 72 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT---------TS-EEEEEECTTTCEEEE--TTSBTTTTT--TT
T ss_pred HhHhhccccChHHHHHHHHHHHhC-----C---CccceehhccCCcchhhhCCCCccHHHccCcCC
Confidence 345788999999999999998854 1 3345662 22 11 45 44569999999988
No 118
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=34.08 E-value=1e+02 Score=24.13 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=29.3
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEE--EecCee---cCCCCccccc
Q 032861 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKI---LENNKTVGQC 73 (132)
Q Consensus 20 ~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrL--Iy~Gk~---LeD~~tLs~~ 73 (132)
+.+.++.+.||.+|-+.++.++.- ...+...+|| +++||+ +..+.+|++.
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~k~~~----~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQKKVGF----SEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHTT--------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEECCCCCHHHHHHHHHHHcCC----CcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 357789999999999999998431 0111446676 677775 5677777766
No 119
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=33.85 E-value=1e+02 Score=20.98 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=24.1
Q ss_pred cchHHHHHHHHHhh-CCCCcccCCCCCcceEEEecCee----cCCCCcccccCCCCC
Q 032861 27 ASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLISSGKI----LENNKTVGQCKIPYG 78 (132)
Q Consensus 27 s~TV~~LK~~I~~~-~p~d~e~~P~~~~~qrLIy~Gk~----LeD~~tLs~~~I~~g 78 (132)
.+|+++|-++|-.. +. + ..|.=.-.-++||..-. -..+++|+++||.+|
T Consensus 8 ~~TL~~lv~~Vlk~~Lg--~-~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~g 61 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLG--M-NEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNG 61 (87)
T ss_dssp T-BHHHHHHHCCCCCS-----SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT
T ss_pred hCcHHHHHHHHHHhccC--C-CCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCC
Confidence 57888888877654 22 0 11100013455554432 134578999999988
No 120
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=33.42 E-value=50 Score=28.74 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=45.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC---eec--CCCCcccccCCCCC
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KIL--ENNKTVGQCKIPYG 78 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G---k~L--eD~~tLs~~~I~~g 78 (132)
.|.+|+.+|... -..|-++.+|..|=..+..+.. +-+ -...+|+++- |.| .-+.|+.++||.+.
T Consensus 279 ~i~vR~pdG~R~-qrkf~~sepv~ll~~~~~s~~d----g~~--k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS 347 (356)
T KOG1364|consen 279 SIQVRFPDGRRK-QRKFLKSEPVQLLWSFCYSHMD----GSD--KKRFKLVQAIPASKTLDYGADATFKEAGLANS 347 (356)
T ss_pred EEEEecCCccHH-HHhhccccHHHHHHHHHHHhhc----ccc--cccceeeecccchhhhhccccchHHHhccCcc
Confidence 488999999654 4566778888877666665522 222 5667888877 655 57889999999965
No 121
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=32.97 E-value=20 Score=30.26 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=32.6
Q ss_pred eEEeC-CcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcc
Q 032861 21 PFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTV 70 (132)
Q Consensus 21 ~~~v~-~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tL 70 (132)
.+.+. .+..|..+|+++.... .+| ++-|++.|.|..|.|+..+
T Consensus 296 ~~~~~~~~~~~~~~k~k~~~~~-----~i~--~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 296 KITVQSLSENVASLKEKIADES-----QIP--ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred eecccccccccccccccccccc-----ccc--hhheeeccCCcccCccccc
Confidence 34444 6677889999988772 244 9999999999999988544
No 122
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=32.76 E-value=40 Score=25.84 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.5
Q ss_pred cCe-ecCCCCcccccCCCCCCC
Q 032861 60 SGK-ILENNKTVGQCKIPYGEV 80 (132)
Q Consensus 60 ~Gk-~LeD~~tLs~~~I~~gd~ 80 (132)
+|+ ..+|++||++++++-||+
T Consensus 109 ~g~Kg~ddnktL~~~kf~iGD~ 130 (151)
T KOG3391|consen 109 LGRKGIDDNKTLQQTKFEIGDY 130 (151)
T ss_pred cCcccCCccchhhhCCccccce
Confidence 355 459999999999999976
No 123
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=32.67 E-value=74 Score=26.25 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=39.2
Q ss_pred CCcceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecC
Q 032861 2 PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE 65 (132)
Q Consensus 2 ~~~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~Le 65 (132)
++++.|.|-|+..||+ +.++.++-..-|.-+|+.|-.+. .... ...|-|-|.-++-.
T Consensus 23 ~~~d~itlef~~~DGt-lit~~~Df~~~v~i~kalilge~-----e~gq-s~yq~~cf~~~~~~ 79 (240)
T PF14941_consen 23 SEEDTITLEFQRSDGT-LITQLADFKQEVQIFKALILGEE-----ERGQ-SQYQALCFVTKLQK 79 (240)
T ss_pred CCCceEEEEEEcCCCc-EEeeehhhhhHHHHHHHHHcChh-----hhcc-CcceeEEEEEeecc
Confidence 4588899999999994 44677787778888888887551 1211 44566666655443
No 124
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=31.04 E-value=1.7e+02 Score=19.81 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=24.6
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 032861 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 10 ~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~ 40 (132)
++-+++|+. ..+.+-|..||.++=.++-++
T Consensus 3 rV~LPdg~~-T~V~vrpG~ti~d~L~kllek 32 (73)
T cd01817 3 RVILPDGST-TVVPTRPGESIRDLLSGLCEK 32 (73)
T ss_pred EEECCCCCe-EEEEecCCCCHHHHHHHHHHH
Confidence 566899954 468999999999988888877
No 125
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=30.45 E-value=1.5e+02 Score=18.95 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=37.0
Q ss_pred eEEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecC
Q 032861 6 LIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE 65 (132)
Q Consensus 6 ~v~l~~rl~~G~---~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~Le 65 (132)
+|.++|....|. .-.+++++.+.|..+|-+.|.+-.+.+++.+ .-.++..|..|.
T Consensus 1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~v-----pfdF~i~~~~lr 58 (65)
T PF08154_consen 1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPV-----PFDFLINGEELR 58 (65)
T ss_pred CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCC-----cEEEEECCEEee
Confidence 467888887772 1125899999999999888877663233333 355666776664
No 126
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=30.29 E-value=78 Score=22.04 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=27.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p 42 (132)
|++|..-+.++....++++.|-+.|.+++.+.++
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCR 34 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhC
Confidence 3455544448888999999999999999999855
No 127
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=29.46 E-value=1.9e+02 Score=19.83 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCe--ecCCCCcccccC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK--ILENNKTVGQCK 74 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk--~LeD~~tLs~~~ 74 (132)
...+.|++...+.....++.++.++|+.+|-+.+..++..+ -..+...++--|==.|+ .|..+..|.+|.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~-~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKD-LLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHH-TT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhh-cCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 34677888888666777899999999999888777661000 00111021344434444 555666777665
No 128
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=28.80 E-value=1.3e+02 Score=21.13 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=30.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~ 41 (132)
.++|++-+.+|..+ .+++..+++..+|=+.+.+++
T Consensus 1 ~V~L~V~Lpdg~~i-~V~v~~s~~a~~Vleav~~kl 35 (87)
T cd01777 1 DVELRIALPDKATV-TVRVRKNATTDQVYQALVAKA 35 (87)
T ss_pred CeEEEEEccCCCEE-EEEEEEcccHHHHHHHHHHHh
Confidence 37899999999776 689999999999999999883
No 129
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=28.42 E-value=57 Score=22.34 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=18.2
Q ss_pred eEEeCCcchHHHHHHHHHhh
Q 032861 21 PFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~ 40 (132)
.+.++.+.|+.++|+.++++
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eEEccccccHHHHHHHHHHH
Confidence 47888999999999999988
No 130
>KOG4261 consensus Talin [Cytoskeleton]
Probab=27.15 E-value=97 Score=30.12 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=46.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEe------cCeecCCCCcccccCCCCC
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS------SGKILENNKTVGQCKIPYG 78 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy------~Gk~LeD~~tLs~~~I~~g 78 (132)
..++|++-+. ....++-|+|+++|.+-...|.+++| | .+..+++..|.- .|-.|+...||..|-+.++
T Consensus 2 ~~lsl~i~~~--~v~ktmqfepst~vyda~~~ire~~~---~-~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~ 75 (1003)
T KOG4261|consen 2 VALSLKISSA--NVVKTMQFEPSTLVYDACKVIREKFA---E-ADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNG 75 (1003)
T ss_pred ceeEEEEEec--ceeeeeeecCchHHHHHHHHHHHHhh---h-cccCchhcceeeecCCcccceeecCCccHHHHHHhcc
Confidence 3456666544 34557899999999999999999977 2 111144444422 3557788888888887777
Q ss_pred C
Q 032861 79 E 79 (132)
Q Consensus 79 d 79 (132)
|
T Consensus 76 d 76 (1003)
T KOG4261|consen 76 D 76 (1003)
T ss_pred c
Confidence 5
No 131
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.91 E-value=93 Score=26.37 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=30.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~ 41 (132)
..-.|.||+.||.. +...|.+..+..+|+..|....
T Consensus 209 s~crlQiRl~DG~T-l~~tF~a~E~L~~VR~wVd~n~ 244 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQT-LTQTFNARETLAAVRLWVDLNR 244 (290)
T ss_pred cceEEEEEcCCCCe-eeeecCchhhHHHHHHHHHHhc
Confidence 45678899999954 4689999999999999999884
No 132
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=26.61 E-value=1.3e+02 Score=20.66 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=27.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G 61 (132)
.+.+.+..+..+|.++|+++++ ..++..+|-|.-
T Consensus 10 ai~v~~g~~y~~L~~~ls~kL~-------l~~~~~~LSY~~ 43 (78)
T cd06411 10 ALRAPRGADVSSLRALLSQALP-------QQAQRGQLSYRA 43 (78)
T ss_pred EEEccCCCCHHHHHHHHHHHhc-------CChhhcEEEecC
Confidence 4678899999999999999965 227888887764
No 133
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=25.16 E-value=1.7e+02 Score=18.81 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=34.6
Q ss_pred EEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE
Q 032861 7 IDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (132)
Q Consensus 7 v~l~~rl~~G~~---i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI 58 (132)
--|++-..++.. ...+.+++++|+.+|=+.+.+++. ++.++..-.|.
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~-----l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFG-----LAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTT-----TSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhC-----CCCCCCCEEEE
Confidence 357788888852 667999999999999999998843 22336666674
No 134
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=21.72 E-value=96 Score=18.18 Aligned_cols=14 Identities=7% Similarity=0.411 Sum_probs=12.0
Q ss_pred CCcceEEEecCeec
Q 032861 51 AVTEIKLISSGKIL 64 (132)
Q Consensus 51 ~~~~qrLIy~Gk~L 64 (132)
...++.+.|+|+..
T Consensus 4 ~~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 4 ETAQLTIFYGGQVC 17 (36)
T ss_pred CCCcEEEEECCEEE
Confidence 37788999999977
No 135
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=20.64 E-value=1.5e+02 Score=22.77 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.2
Q ss_pred HHHHHHHhhCCCC------------cccCCCCCcceEEEecCeecC
Q 032861 32 MLKQRIVSDWPKG------------KTIVPKAVTEIKLISSGKILE 65 (132)
Q Consensus 32 ~LK~~I~~~~p~d------------~e~~P~~~~~qrLIy~Gk~Le 65 (132)
.+|+.|.|++.++ ++.-|. -+..++.++||+|.
T Consensus 102 ~~K~~i~E~FGDGIMSAIdF~~~v~k~~dp~-Gdrv~it~~GKfLp 146 (150)
T TIGR00673 102 TLKAVVHEKFGDGIMSAIDFKLDVEKVADPG-GERAVITLNGKYLP 146 (150)
T ss_pred HHHHHHHHHhCcceeeeeeeceeeeeecCCC-CCEEEEEecccccC
Confidence 6789999987644 123332 46788999999984
No 136
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=20.41 E-value=2.3e+02 Score=17.61 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=32.3
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.++++...||.+|.+.+. ++ +....+..+|+++.-++ -.++-+++||
T Consensus 7 ~~~~~~~~tv~~ll~~l~--~~---------~~~v~v~vN~~iv~~~~-~~~~~L~~gD 53 (64)
T TIGR01683 7 PVEVEDGLTLAALLESLG--LD---------PRRVAVAVNGEIVPRSE-WDDTILKEGD 53 (64)
T ss_pred EEEcCCCCcHHHHHHHcC--CC---------CCeEEEEECCEEcCHHH-cCceecCCCC
Confidence 467888889999887754 22 66777888999884222 2235588885
No 137
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.25 E-value=3.4e+02 Score=19.52 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=23.0
Q ss_pred ceEEEEEEeCCCCeee-------e--EEe-CCcchHHHHHHHHHhh
Q 032861 5 ELIDIKFRLYDGSDIG-------P--FRY-SSASTVDMLKQRIVSD 40 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~-------~--~~v-~~s~TV~~LK~~I~~~ 40 (132)
+..+++|++..|.+.. . +++ +..+||+++=..|...
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~ 48 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGK 48 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHH
Confidence 3466777777775432 1 222 3567899988888776
Done!