Query 032861
Match_columns 132
No_of_seqs 127 out of 896
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 10:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 5.6E-28 1.9E-32 177.8 13.1 96 4-99 14-109 (126)
2 1wgh_A Ubiquitin-like 3, HCG-1 99.9 4.7E-24 1.6E-28 154.5 12.2 92 4-100 14-106 (116)
3 2gow_A HCG-1 protein, ubiquiti 99.9 9.1E-24 3.1E-28 154.6 11.1 92 4-100 15-107 (125)
4 1wgd_A Homocysteine-responsive 99.8 1.7E-18 5.7E-23 118.3 9.6 85 3-98 4-91 (93)
5 3phx_B Ubiquitin-like protein 99.8 5.6E-18 1.9E-22 111.6 9.9 76 6-95 4-79 (79)
6 4dwf_A HLA-B-associated transc 99.7 1.4E-17 4.7E-22 112.4 10.8 81 4-99 3-83 (90)
7 2uyz_B Small ubiquitin-related 99.7 7.7E-18 2.6E-22 111.0 9.0 79 4-96 1-79 (79)
8 4eew_A Large proline-rich prot 99.7 1.4E-17 4.9E-22 111.9 10.2 74 4-92 15-88 (88)
9 2faz_A Ubiquitin-like containi 99.7 1.6E-17 5.5E-22 109.0 10.1 75 7-94 3-78 (78)
10 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2.4E-17 8.1E-22 110.2 10.7 81 3-97 4-84 (87)
11 3dbh_I NEDD8; cell cycle, acti 99.7 1.1E-17 3.8E-22 111.7 9.0 79 4-96 10-88 (88)
12 4fbj_B NEDD8; effector-HOST ta 99.7 1.1E-17 3.8E-22 113.5 9.0 78 8-99 2-79 (88)
13 1wy8_A NP95-like ring finger p 99.7 2.3E-17 7.8E-22 110.9 10.4 83 3-98 4-87 (89)
14 3plu_A Ubiquitin-like modifier 99.7 1.3E-17 4.3E-22 117.0 9.2 73 4-90 19-91 (93)
15 1wju_A NEDD8 ultimate buster-1 99.7 1.7E-17 5.7E-22 117.5 9.2 79 7-100 16-98 (100)
16 4hcn_B Polyubiquitin, ubiquiti 99.7 2.6E-17 8.7E-22 113.7 9.7 79 4-96 20-98 (98)
17 2kan_A Uncharacterized protein 99.7 2.9E-17 1E-21 113.4 10.0 80 4-98 13-93 (94)
18 2kdb_A Homocysteine-responsive 99.7 9.5E-18 3.2E-22 117.8 7.5 75 4-90 21-99 (99)
19 2wyq_A HHR23A, UV excision rep 99.7 5E-17 1.7E-21 108.0 9.9 80 6-96 5-84 (85)
20 2dzi_A Ubiquitin-like protein 99.7 3.9E-17 1.4E-21 107.2 9.2 78 3-94 4-81 (81)
21 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 4.5E-17 1.5E-21 110.9 9.7 80 7-100 2-81 (96)
22 2daf_A FLJ35834 protein; hypot 99.7 2.2E-17 7.7E-22 120.2 8.5 83 4-99 13-95 (118)
23 3v6c_B Ubiquitin; structural g 99.7 5E-17 1.7E-21 110.4 9.8 76 4-93 15-90 (91)
24 1ndd_A NEDD8, protein (ubiquit 99.7 5.5E-17 1.9E-21 104.8 9.4 75 8-96 2-76 (76)
25 3mtn_B UBA80, ubcep1, ubiquiti 99.7 5.5E-17 1.9E-21 107.2 9.6 79 5-97 2-80 (85)
26 1uh6_A Ubiquitin-like 5; beta- 99.7 3.1E-17 1.1E-21 116.1 8.8 74 4-91 26-99 (100)
27 3n3k_B Ubiquitin; hydrolase, p 99.7 3.2E-17 1.1E-21 108.5 8.4 78 6-97 3-80 (85)
28 2lxa_A Ubiquitin-like protein 99.7 1.7E-17 5.7E-22 114.1 6.9 75 7-95 2-80 (87)
29 4a20_A Ubiquitin-like protein 99.7 5.1E-17 1.8E-21 114.0 9.4 78 4-94 17-97 (98)
30 2hj8_A Interferon-induced 17 k 99.7 2.8E-17 9.5E-22 111.4 7.7 79 6-98 4-82 (88)
31 3a9j_A Ubiquitin; protein comp 99.7 1.1E-16 3.8E-21 103.3 9.9 75 8-96 2-76 (76)
32 2bwf_A Ubiquitin-like protein 99.7 1.6E-16 5.6E-21 103.3 10.1 73 6-93 4-76 (77)
33 1wyw_B Ubiquitin-like protein 99.7 7.4E-17 2.5E-21 111.5 8.6 78 5-96 20-97 (97)
34 1wia_A Hypothetical ubiquitin- 99.7 1.7E-16 5.9E-21 108.4 10.3 80 2-98 3-83 (95)
35 1j8c_A Ubiquitin-like protein 99.7 1.6E-16 5.4E-21 115.2 10.6 92 4-110 30-121 (125)
36 2kk8_A Uncharacterized protein 99.7 7.6E-17 2.6E-21 109.2 8.3 74 6-93 10-84 (84)
37 1yqb_A Ubiquilin 3; structural 99.7 1.1E-16 3.9E-21 111.5 9.3 79 4-97 20-98 (100)
38 1sif_A Ubiquitin; hydrophobic 99.7 1.1E-16 3.8E-21 108.5 8.7 77 7-97 10-86 (88)
39 3vdz_A Ubiquitin-40S ribosomal 99.7 1.7E-16 6E-21 112.3 9.8 78 5-96 34-111 (111)
40 1wx8_A Riken cDNA 4931431F19; 99.7 7.3E-17 2.5E-21 110.3 7.4 79 4-97 15-93 (96)
41 1uel_A HHR23B, UV excision rep 99.7 3E-16 1E-20 107.7 10.1 80 8-98 2-81 (95)
42 3m62_B UV excision repair prot 99.7 9.4E-17 3.2E-21 112.8 7.7 76 7-96 2-77 (106)
43 2fnj_B Transcription elongatio 99.7 1.2E-16 4.2E-21 116.1 8.2 81 6-96 2-83 (118)
44 1v2y_A 3300001G02RIK protein; 99.7 1.2E-16 4.1E-21 113.7 7.7 83 2-96 3-99 (105)
45 1we7_A SF3A1 protein; structur 99.7 3.1E-16 1.1E-20 111.3 9.6 81 5-99 24-114 (115)
46 3l0w_B Monoubiquitinated proli 99.7 3.8E-16 1.3E-20 118.3 10.2 81 8-102 2-82 (169)
47 2klc_A Ubiquilin-1; ubiquitin- 99.7 5.2E-16 1.8E-20 108.2 10.0 78 4-96 23-100 (101)
48 3rt3_B Ubiquitin-like protein 99.7 4.8E-16 1.6E-20 114.3 10.0 78 6-97 81-158 (159)
49 2l7r_A Ubiquitin-like protein 99.7 2.5E-16 8.6E-21 108.1 7.7 75 6-96 19-93 (93)
50 1ttn_A DC-UBP, dendritic cell- 99.7 6.2E-16 2.1E-20 108.4 9.6 78 5-96 22-99 (106)
51 1yx5_B Ubiquitin; proteasome, 99.7 7.6E-16 2.6E-20 105.8 9.9 78 8-99 2-79 (98)
52 1wx7_A Ubiquilin 3; ubiquitin- 99.7 7E-16 2.4E-20 107.8 9.7 81 4-99 15-95 (106)
53 1we6_A Splicing factor, putati 99.6 4.1E-16 1.4E-20 109.9 8.3 79 5-97 26-108 (111)
54 2kdi_A Ubiquitin, vacuolar pro 99.6 9.5E-16 3.2E-20 109.2 10.1 80 6-99 9-88 (114)
55 4ajy_B Transcription elongatio 99.6 6E-16 2.1E-20 112.6 9.0 79 6-93 2-81 (118)
56 1v5o_A 1700011N24RIK protein; 99.6 8.4E-16 2.9E-20 107.0 9.4 83 4-99 5-91 (102)
57 2ojr_A Ubiquitin; lanthide-bin 99.6 1.3E-15 4.6E-20 107.4 10.1 78 5-96 34-111 (111)
58 3u30_A Ubiquitin, linear DI-ub 99.6 1.2E-15 4.2E-20 114.0 9.5 82 4-99 18-99 (172)
59 1x1m_A Ubiquitin-like protein 99.6 1.2E-15 4E-20 107.2 8.7 82 4-97 10-104 (107)
60 3m63_B Ubiquitin domain-contai 99.6 5E-16 1.7E-20 108.6 5.9 73 6-93 28-100 (101)
61 3b1l_X E3 ubiquitin-protein li 99.4 4.1E-17 1.4E-21 106.4 0.0 74 8-95 2-75 (76)
62 3u5c_f 40S ribosomal protein S 99.6 5E-17 1.7E-21 122.0 0.1 79 8-100 2-80 (152)
63 3rt3_B Ubiquitin-like protein 99.6 2.1E-15 7.1E-20 110.9 8.6 96 7-116 3-105 (159)
64 3q3f_A Ribonuclease/ubiquitin 99.6 2.5E-15 8.7E-20 116.4 9.1 81 6-100 105-185 (189)
65 1wxv_A BAG-family molecular ch 99.6 5.6E-15 1.9E-19 100.3 9.2 79 3-96 4-88 (92)
66 4b6w_A Tubulin-specific chaper 99.6 4.6E-15 1.6E-19 101.5 8.2 75 7-94 3-85 (86)
67 3b08_A Polyubiquitin-C, ubiqui 99.6 1.1E-14 3.6E-19 105.0 10.2 76 7-96 77-152 (152)
68 2kd0_A LRR repeats and ubiquit 99.6 1.1E-14 3.8E-19 98.5 9.2 69 11-93 16-84 (85)
69 1v5t_A 8430435I17RIK protein; 99.6 8.1E-15 2.8E-19 99.9 8.6 77 3-94 4-84 (90)
70 1wgg_A Ubiquitin carboxyl-term 99.6 5.7E-15 2E-19 102.3 7.8 76 3-94 4-80 (96)
71 3b08_A Polyubiquitin-C, ubiqui 99.6 7.9E-15 2.7E-19 105.7 8.8 78 8-99 2-79 (152)
72 3u30_A Ubiquitin, linear DI-ub 99.6 7.6E-15 2.6E-19 109.7 8.3 76 7-96 97-172 (172)
73 4dbg_A Ranbp-type and C3HC4-ty 99.6 3E-14 1E-18 101.6 10.3 77 5-94 23-101 (105)
74 3u5e_m 60S ribosomal protein L 99.6 3.5E-16 1.2E-20 113.0 0.1 76 8-97 2-77 (128)
75 1v86_A DNA segment, CHR 7, way 99.5 1.4E-14 4.7E-19 99.9 7.1 75 4-94 15-89 (95)
76 2kjr_A CG11242; UBL, ubiquitin 99.5 4.9E-14 1.7E-18 98.0 8.6 74 4-90 13-93 (95)
77 2dzj_A Synaptic glycoprotein S 99.5 5.9E-14 2E-18 96.1 8.5 73 5-89 9-85 (88)
78 1oqy_A HHR23A, UV excision rep 99.5 4.4E-14 1.5E-18 118.8 8.4 84 4-97 5-88 (368)
79 2kj6_A Tubulin folding cofacto 99.5 9.4E-14 3.2E-18 97.1 7.9 76 4-92 12-95 (97)
80 2xzm_9 RPS31E; ribosome, trans 99.5 5.4E-15 1.9E-19 114.9 0.5 74 8-100 2-75 (189)
81 1v6e_A Cytoskeleton-associated 99.5 3E-13 1E-17 92.9 8.8 76 4-92 5-87 (95)
82 3ai5_A Yeast enhanced green fl 99.4 3.9E-13 1.3E-17 110.9 9.4 75 5-93 232-306 (307)
83 2dzm_A FAS-associated factor 1 99.4 3.4E-13 1.2E-17 94.9 6.4 76 7-98 10-87 (100)
84 1wf9_A NPL4 family protein; be 99.4 1.3E-12 4.4E-17 91.9 6.8 77 3-94 4-96 (107)
85 1t0y_A Tubulin folding cofacto 99.4 6E-12 2E-16 90.4 10.5 75 6-93 6-87 (122)
86 2io1_B Small ubiquitin-related 99.3 5E-12 1.7E-16 87.6 8.4 80 4-97 5-84 (94)
87 3shq_A UBLCP1; phosphatase, hy 99.3 4.3E-12 1.5E-16 104.6 7.7 78 3-95 2-82 (320)
88 2io0_B Small ubiquitin-related 99.3 4.3E-11 1.5E-15 82.6 10.0 79 5-97 4-82 (91)
89 2d07_B Ubiquitin-like protein 99.2 9.8E-11 3.4E-15 80.8 10.0 79 4-96 15-93 (93)
90 2kzr_A Ubiquitin thioesterase 99.2 2.2E-11 7.4E-16 82.0 5.2 71 8-93 2-78 (86)
91 1wz0_A Ubiquitin-like protein 99.2 1.1E-10 3.9E-15 82.4 9.0 81 4-98 22-102 (104)
92 1wm3_A Ubiquitin-like protein 99.1 2.4E-10 8.4E-15 74.9 8.9 70 7-90 2-71 (72)
93 2k8h_A Small ubiquitin protein 99.1 2E-10 6.8E-15 82.1 7.9 78 5-96 25-102 (110)
94 2eke_C Ubiquitin-like protein 99.1 5E-10 1.7E-14 79.6 9.6 78 4-96 29-106 (106)
95 3a4r_A Nfatc2-interacting prot 99.1 7.3E-10 2.5E-14 74.1 8.8 73 4-90 5-78 (79)
96 1wjn_A Tubulin-folding protein 99.0 4.9E-09 1.7E-13 71.8 9.2 75 5-93 8-93 (97)
97 3pge_A SUMO-modified prolifera 98.7 1.5E-07 5.2E-12 73.5 10.3 84 4-102 27-110 (200)
98 3kyd_D Small ubiquitin-related 98.6 1.9E-07 6.4E-12 67.3 9.4 76 5-94 39-114 (115)
99 3tix_A Ubiquitin-like protein 98.4 1.2E-06 4.1E-11 68.7 8.2 81 4-99 55-135 (207)
100 4efo_A Serine/threonine-protei 98.1 8.9E-06 3E-10 56.7 7.7 47 11-65 18-64 (94)
101 2pjh_A Protein NPL4, nuclear p 97.9 4.3E-06 1.5E-10 56.0 2.2 64 7-79 5-73 (80)
102 3v7o_A Minor nucleoprotein VP3 97.9 1.7E-06 5.7E-11 68.7 0.1 79 4-97 19-97 (227)
103 3uf8_A Ubiquitin-like protein 97.9 0.00017 5.8E-09 55.7 11.2 78 4-96 19-96 (209)
104 3qx1_A FAS-associated factor 1 97.8 0.00015 5.1E-09 48.3 8.7 66 4-78 5-75 (84)
105 2jxx_A Nfatc2-interacting prot 97.7 0.00033 1.1E-08 48.7 9.4 69 4-79 23-91 (97)
106 3ix6_A TS, tsase, thymidylate 97.6 8.1E-06 2.8E-10 68.6 -0.6 100 4-118 19-141 (360)
107 3goe_A DNA repair protein RAD6 97.5 0.00095 3.3E-08 45.4 9.1 64 6-79 9-75 (82)
108 3ivf_A Talin-1; FERM domain, c 97.2 0.0031 1E-07 51.5 10.1 71 4-79 1-77 (371)
109 2cr5_A Reproduction 8; UBX dom 97.1 0.0026 8.8E-08 44.4 7.9 71 4-90 21-96 (109)
110 2dzk_A UBX domain-containing p 97.1 0.0046 1.6E-07 43.2 9.1 74 4-91 11-89 (109)
111 4da1_A Protein phosphatase 1K, 97.1 8.3E-05 2.8E-09 61.6 0.0 81 4-99 28-108 (389)
112 2bps_A YUKD protein; ubiquitin 97.0 0.0016 5.3E-08 44.1 6.2 71 6-79 4-76 (81)
113 1wj4_A KIAA0794 protein; UBX d 97.0 0.0039 1.3E-07 44.7 8.7 65 4-78 41-111 (124)
114 1s3s_G P47 protein; AAA ATPase 96.9 0.0047 1.6E-07 44.3 8.1 68 4-78 50-120 (127)
115 2l76_A Nfatc2-interacting prot 96.9 0.0085 2.9E-07 41.7 9.0 67 4-79 19-85 (95)
116 2kc2_A Talin-1, F1; FERM, adhe 96.7 0.0016 5.6E-08 47.5 4.1 71 8-79 13-115 (128)
117 4e71_A Plexin-B2, MM1; transme 95.8 0.082 2.8E-06 37.6 9.1 79 6-91 11-109 (111)
118 2r2o_A Plexin-B1; effector dom 95.5 0.11 3.9E-06 38.2 9.1 82 6-94 24-130 (138)
119 3h6n_A Plexin-D1; structural g 94.8 0.35 1.2E-05 35.1 9.8 66 20-92 19-104 (127)
120 4e74_A Plexin-A4; RBD, structu 93.8 0.45 1.5E-05 34.0 8.5 80 7-93 14-115 (117)
121 3kuz_A Plexin-C1; structural g 91.0 1.4 4.7E-05 31.9 8.1 64 19-90 40-124 (126)
122 2al3_A TUG long isoform; TUG U 91.0 1 3.6E-05 30.7 7.1 71 8-92 11-81 (90)
123 4a3p_A Ubiquitin carboxyl-term 90.4 1.7 5.9E-05 33.1 8.7 64 8-78 129-200 (217)
124 3hm6_X Plexin-B1; structural g 90.2 1.8 6.1E-05 38.8 9.6 80 7-93 258-362 (644)
125 3jyu_A Ubiquitin carboxyl-term 88.1 5.8 0.0002 30.4 10.3 52 20-78 154-212 (231)
126 3ig3_A Plxna3 protein; plexin 87.6 4.1 0.00014 36.4 10.1 80 7-93 234-335 (627)
127 2v1y_A Phosphatidylinositol-4, 80.8 2.5 8.6E-05 29.6 4.7 35 5-40 18-52 (108)
128 3ge3_C Toluene-4-monooxygenase 79.7 12 0.0004 25.3 7.7 72 6-79 3-76 (84)
129 2y3a_A Phosphatidylinositol-4, 71.5 31 0.0011 32.7 10.5 79 4-92 49-136 (1092)
130 2daj_A KIAA0977 protein, COBL- 71.2 4.3 0.00015 27.7 3.6 66 4-77 8-76 (91)
131 2c7h_A RBBP6, retinoblastoma-b 68.7 15 0.00051 24.7 5.9 35 4-40 6-41 (86)
132 1wgr_A Growth factor receptor- 66.9 13 0.00043 25.6 5.3 63 4-74 7-76 (100)
133 2q5w_D Molybdopterin convertin 63.8 9.7 0.00033 23.5 4.0 46 21-79 19-66 (77)
134 1ip9_A BEM1 protein; ubiquitin 62.3 17 0.00059 24.4 5.2 36 5-42 11-46 (85)
135 2l32_A Small archaeal modifier 61.1 14 0.00047 23.6 4.4 49 8-68 2-50 (74)
136 1oey_A P67-PHOX, neutrophil cy 60.2 17 0.00058 24.2 4.8 38 18-62 14-51 (83)
137 3po0_A Small archaeal modifier 59.9 30 0.001 21.9 6.3 54 20-79 20-78 (89)
138 3ivf_A Talin-1; FERM domain, c 53.9 76 0.0026 25.2 8.7 35 6-41 85-119 (371)
139 1y8x_B Ubiquitin-activating en 53.8 21 0.00073 24.2 4.6 79 19-112 6-97 (98)
140 2kmm_A Guanosine-3',5'-BIS(dip 52.6 22 0.00076 21.4 4.2 29 9-40 3-31 (73)
141 4eut_A Serine/threonine-protei 50.6 88 0.003 24.4 9.1 38 18-62 322-359 (396)
142 2inc_C TOUB protein; DIIRON, 4 50.1 54 0.0019 21.9 8.9 57 21-78 16-74 (83)
143 2i1j_A Moesin; FERM, coiled-co 49.1 1.3E+02 0.0045 26.0 10.3 79 6-96 4-87 (575)
144 1vjk_A Molybdopterin convertin 45.1 61 0.0021 21.0 6.4 67 7-79 10-87 (98)
145 3qij_A Protein 4.1; cytoskelet 44.8 24 0.00083 27.5 4.3 35 5-40 16-50 (296)
146 1ef1_A Moesin; membrane, FERM 44.4 1E+02 0.0035 23.4 9.5 76 7-94 2-82 (294)
147 1h4r_A Merlin; FERM, neurofibr 43.5 1.1E+02 0.0038 23.5 9.7 77 5-93 21-101 (314)
148 2kvr_A Ubiquitin carboxyl-term 42.8 22 0.00075 25.1 3.4 33 21-60 59-91 (130)
149 3hhm_A Phosphatidylinositol-4, 42.1 25 0.00085 33.3 4.5 68 6-76 42-118 (1091)
150 1vd2_A Protein kinase C, IOTA 41.6 75 0.0026 21.1 6.6 35 6-42 6-40 (89)
151 2juo_A GA-binding protein alph 41.5 80 0.0027 21.3 7.0 64 22-96 7-70 (89)
152 3rpf_C Molybdopterin convertin 40.7 62 0.0021 19.8 7.3 61 9-79 3-63 (74)
153 1ryj_A Unknown; beta/alpha pro 39.9 64 0.0022 19.7 7.6 43 21-79 17-59 (70)
154 2ylm_A Ubiquitin carboxyl-term 39.3 22 0.00076 30.5 3.5 31 21-58 39-69 (530)
155 1wgk_A Riken cDNA 2900073H19 p 36.7 91 0.0031 21.2 5.8 39 6-44 11-59 (114)
156 1rws_A Hypothetical protein PF 35.5 15 0.0005 23.2 1.3 43 21-79 24-66 (77)
157 1q1o_A Cell division control p 34.2 51 0.0017 22.5 4.0 25 17-41 22-46 (98)
158 3qa8_A MGC80376 protein; kinas 34.1 43 0.0015 29.7 4.5 56 13-76 318-374 (676)
159 3hk0_A Growth factor receptor- 32.4 67 0.0023 25.1 5.0 34 6-40 8-41 (256)
160 1wz3_A Autophagy 12B, ATG12B, 31.8 74 0.0025 21.3 4.5 59 4-72 11-74 (96)
161 4gmv_A RAS-associated and plec 30.6 73 0.0025 25.3 5.0 34 6-40 31-64 (281)
162 3au4_A Myosin-X; protein-prote 29.5 71 0.0024 26.9 5.0 35 6-41 216-250 (555)
163 1wwt_A Threonyl-tRNA synthetas 28.3 1.1E+02 0.0037 19.2 4.7 37 1-40 4-41 (88)
164 1fm0_D Molybdopterin convertin 27.4 1.1E+02 0.0037 18.6 5.9 47 25-79 23-70 (81)
165 3hvz_A Uncharacterized protein 26.9 91 0.0031 19.9 4.1 30 8-40 7-36 (78)
166 1f0z_A THis protein; ubiquitin 24.8 78 0.0027 18.9 3.3 47 21-79 9-55 (66)
167 4gdk_A Ubiquitin-like protein 24.3 1.6E+02 0.0054 19.4 5.2 62 4-72 3-69 (91)
168 3pvl_A Myosin VIIA isoform 1; 23.7 1E+02 0.0034 27.2 5.0 35 6-41 263-297 (655)
169 2g1e_A Hypothetical protein TA 22.3 1.5E+02 0.005 18.3 6.1 55 21-79 18-79 (90)
170 3tca_A Amyloid beta A4 precurs 21.0 1.3E+02 0.0044 22.4 4.6 34 6-40 34-67 (291)
171 4a6q_A Histone deacetylase com 20.5 82 0.0028 22.9 3.2 55 26-80 62-132 (143)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.95 E-value=5.6e-28 Score=177.76 Aligned_cols=96 Identities=46% Similarity=0.808 Sum_probs=91.2
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
++.++|+||+.+|++|.++++++++||++||++|+++||+|+|++|+++++|||||+||+|+|+.||++|+|+.|++|++
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 68899999999999998899999999999999999999999999997779999999999999999999999999999888
Q ss_pred eEEEEEEecCCCcccc
Q 032861 84 VIIMHVVVQPSLAKTK 99 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~ 99 (132)
++|||||+++.+++++
T Consensus 94 v~tmhlVlrl~g~~kk 109 (126)
T 1se9_A 94 VTTMHVIIQAPVTEKE 109 (126)
T ss_dssp CEEEEEEECCCSSCCC
T ss_pred cEEEEEEeccCCcccc
Confidence 9999999999988665
No 2
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.91 E-value=4.7e-24 Score=154.50 Aligned_cols=92 Identities=23% Similarity=0.552 Sum_probs=82.4
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCC-cccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d-~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~ 82 (132)
++.++|+||+.+| +..+++|++++||++||++|+++||+| +|++|.++++|||||+||+|+|+.||++|+|+.+++
T Consensus 14 ~~~m~I~vKtl~G-~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~-- 90 (116)
T 1wgh_A 14 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT-- 90 (116)
T ss_dssp SSSEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCE--
T ss_pred CCeEEEEEEeCCC-CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence 5779999999999 566899999999999999999999999 477765599999999999999999999999987753
Q ss_pred ceEEEEEEecCCCccccc
Q 032861 83 GVIIMHVVVQPSLAKTKT 100 (132)
Q Consensus 83 ~~~tmHlv~r~~~~~~~~ 100 (132)
+||||++++.++.+++
T Consensus 91 --~tlhLvlr~~~~~~~~ 106 (116)
T 1wgh_A 91 --TVMHLVARETLPEPNS 106 (116)
T ss_dssp --EEEEEEECSSCSSSCC
T ss_pred --eEEEEEccCCCCCCCc
Confidence 8999999998887663
No 3
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.90 E-value=9.1e-24 Score=154.64 Aligned_cols=92 Identities=23% Similarity=0.552 Sum_probs=83.6
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCC-cccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d-~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~ 82 (132)
.+.+.|+||+.+| +..+++|++++||++||++|++.||+| +|++|.++++|||||+||+|+|+.||++|+|+.+++
T Consensus 15 ~~~m~I~vktl~G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~-- 91 (125)
T 2gow_A 15 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT-- 91 (125)
T ss_dssp TTCEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSE--
T ss_pred CCeEEEEEEeCCC-CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence 5679999999999 566899999999999999999999999 588876699999999999999999999999998853
Q ss_pred ceEEEEEEecCCCccccc
Q 032861 83 GVIIMHVVVQPSLAKTKT 100 (132)
Q Consensus 83 ~~~tmHlv~r~~~~~~~~ 100 (132)
+||||++++.++++++
T Consensus 92 --~tlhlv~r~~~~~~~~ 107 (125)
T 2gow_A 92 --TVMHLVARETLPEPNS 107 (125)
T ss_dssp --EEEEEEECSCCSSSSS
T ss_pred --eEEEEEecCCCCcccc
Confidence 7899999999887764
No 4
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.7e-18 Score=118.31 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=71.8
Q ss_pred CcceEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCccccc--CCCCCC
Q 032861 3 DEELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGE 79 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~-i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~--~I~~gd 79 (132)
++..+.|+||..+|.. ...+++++++||.+||++|++.+| .++| +++|||||+||+|+|+.+|++| +|.++
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~---~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~- 77 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYP---ERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKR- 77 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHST---TCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCS-
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhc---CCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCC-
Confidence 3677999999999852 124567799999999999999854 2456 9999999999999999999999 99988
Q ss_pred CCCceEEEEEEecCCCccc
Q 032861 80 VPGGVIIMHVVVQPSLAKT 98 (132)
Q Consensus 80 ~~~~~~tmHlv~r~~~~~~ 98 (132)
.++||++++.+++.
T Consensus 78 -----~~i~lv~~~~gg~~ 91 (93)
T 1wgd_A 78 -----HVLHLVCNVKSGPS 91 (93)
T ss_dssp -----EEEEEECCCCCCCC
T ss_pred -----CEEEEEeCCCCCCC
Confidence 89999999888753
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=111.65 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=67.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.+.|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 4 ~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~------~ 69 (79)
T 3phx_B 4 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------S 69 (79)
T ss_dssp CEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTCCTT------C
T ss_pred CEEEEEEeCCCCEE-EEEECCcChHHHHHHHHHhh-----cCCC--HHHEEEEECCEECCCCCcHHHCCCCCC------C
Confidence 47788899999655 68999999999999999987 3455 999999999999999999999999998 6
Q ss_pred EEEEEecCCC
Q 032861 86 IMHVVVQPSL 95 (132)
Q Consensus 86 tmHlv~r~~~ 95 (132)
++|++++..|
T Consensus 70 ~l~l~~rl~G 79 (79)
T 3phx_B 70 TVFMNLRLRG 79 (79)
T ss_dssp EEEEEECCBC
T ss_pred EEEEEEecCC
Confidence 8999998754
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=1.4e-17 Score=112.38 Aligned_cols=81 Identities=17% Similarity=0.375 Sum_probs=68.4
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
...+.|.++..+|..+ .+++++++||.+||++|++. +++| +++|||||+|+.|+|+.+|++|+| +|
T Consensus 3 ~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g----- 68 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GG----- 68 (90)
T ss_dssp CCEEEEEEEETTCCEE-EEEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TT-----
T ss_pred CcEEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCeECCCCCCHHHcCC-CC-----
Confidence 4568899999999655 78999999999999999988 2344 999999999999999999999999 77
Q ss_pred eEEEEEEecCCCcccc
Q 032861 84 VIIMHVVVQPSLAKTK 99 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~ 99 (132)
.++||+++++++...
T Consensus 69 -~~i~l~~~~~~~~~~ 83 (90)
T 4dwf_A 69 -KVIHLVERAPPQTHL 83 (90)
T ss_dssp -EEEEEEECCCC----
T ss_pred -cEEEEEecCCCCCCC
Confidence 799999998766543
No 7
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.74 E-value=7.7e-18 Score=111.01 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=70.1
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
|+.++|+++..+|..+ .+++++++||++||++|+++ +++| +++|||+|+|+.|+|+.||++|+|.+|
T Consensus 1 m~~m~i~vk~~~g~~~-~~~v~~~~tv~~lk~~i~~~-----~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~----- 67 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEE----- 67 (79)
T ss_dssp CCEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCHHHHTCCTT-----
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----HCCC--cccEEEEECCEEeCCCCCHHHcCCCCC-----
Confidence 4678999999999655 68999999999999999988 3444 999999999999999999999999998
Q ss_pred eEEEEEEecCCCc
Q 032861 84 VIIMHVVVQPSLA 96 (132)
Q Consensus 84 ~~tmHlv~r~~~~ 96 (132)
.++|++++..++
T Consensus 68 -~~i~l~~~~~GG 79 (79)
T 2uyz_B 68 -DVIEVYQEQTGG 79 (79)
T ss_dssp -EEEEEEECCCC-
T ss_pred -CEEEEEEeccCC
Confidence 789999998764
No 8
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=111.90 Aligned_cols=74 Identities=19% Similarity=0.428 Sum_probs=65.6
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
...++|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+| +|
T Consensus 15 ~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i-~g----- 80 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GG----- 80 (88)
T ss_dssp CCEEEEEEEETTSCEE-EEEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TT-----
T ss_pred CCeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCCCcHHHcCC-CC-----
Confidence 4568999999999554 68999999999999999988 2344 999999999999999999999999 67
Q ss_pred eEEEEEEec
Q 032861 84 VIIMHVVVQ 92 (132)
Q Consensus 84 ~~tmHlv~r 92 (132)
.++||++|
T Consensus 81 -~~i~lv~R 88 (88)
T 4eew_A 81 -KVIHLVER 88 (88)
T ss_dssp -EEEEEEEC
T ss_pred -cEEEEEEC
Confidence 79999986
No 9
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.6e-17 Score=109.02 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=66.7
Q ss_pred EEEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 7 IDIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~-v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
+.|.++..+|..+..++ +++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~-----~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g------~ 69 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-----FHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLN------D 69 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTTTTTCCTT------C
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCCHHHcCCCCC------C
Confidence 57889999997765788 99999999999999988 3344 999999999999999999999999988 7
Q ss_pred EEEEEecCC
Q 032861 86 IMHVVVQPS 94 (132)
Q Consensus 86 tmHlv~r~~ 94 (132)
++|++++++
T Consensus 70 ~i~l~~r~~ 78 (78)
T 2faz_A 70 TIQLLVRQS 78 (78)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEeCC
Confidence 899999864
No 10
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=2.4e-17 Score=110.22 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=71.5
Q ss_pred CcceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 032861 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~ 82 (132)
++..+.|.++..+|.. ..+++++++||.+||++|++.. ++| +++|||+|.|+.|+|+.+|++|+|.++
T Consensus 4 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~-----gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g---- 71 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIEDQQ-----GLP--KKQQQLEFQGQVLQDWLGLGIYGIQDS---- 71 (87)
T ss_dssp CSSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHHHT-----CCC--TTTEEEEETTEECCSSSBHHHHTCCTT----
T ss_pred CCCCEEEEEEcCCCCE-EEEEeCCCChHHHHHHHHHHHh-----CCC--hHHEEEEECCEEccCCCCHHHCCCCCC----
Confidence 3567899999999954 4789999999999999999982 344 999999999999999999999999988
Q ss_pred ceEEEEEEecCCCcc
Q 032861 83 GVIIMHVVVQPSLAK 97 (132)
Q Consensus 83 ~~~tmHlv~r~~~~~ 97 (132)
+++|+++++.+++
T Consensus 72 --~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 72 --DTLILSKKKGSGP 84 (87)
T ss_dssp --EEEEEEECSCCCS
T ss_pred --CEEEEEEeccCCC
Confidence 7899999988764
No 11
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=1.1e-17 Score=111.65 Aligned_cols=79 Identities=25% Similarity=0.394 Sum_probs=70.2
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
+..+.|.++..+|..+ .+++++++||.+||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.++
T Consensus 10 ~~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~----- 76 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG----- 76 (88)
T ss_dssp CCCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBGGGGTCCTT-----
T ss_pred CCcEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCC-----
Confidence 5668999999999654 78999999999999999988 2344 999999999999999999999999998
Q ss_pred eEEEEEEecCCCc
Q 032861 84 VIIMHVVVQPSLA 96 (132)
Q Consensus 84 ~~tmHlv~r~~~~ 96 (132)
.++|++++..++
T Consensus 77 -~~i~l~~rl~GG 88 (88)
T 3dbh_I 77 -SVLHLVLRLRGG 88 (88)
T ss_dssp -CEEEECCCCCCC
T ss_pred -CEEEEEEeCCCC
Confidence 689999998764
No 12
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.73 E-value=1.1e-17 Score=113.48 Aligned_cols=78 Identities=26% Similarity=0.379 Sum_probs=66.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| .++
T Consensus 2 ~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------~~l 67 (88)
T 4fbj_B 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG------SVL 67 (88)
T ss_dssp EEEEEETTCCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTTTTTCCTT------CEE
T ss_pred EEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-----HCcC--hhHEEEEECCeECCCCCcHHHcCCCCC------CEE
Confidence 688899999665 78999999999999999988 2344 999999999999999999999999998 689
Q ss_pred EEEecCCCcccc
Q 032861 88 HVVVQPSLAKTK 99 (132)
Q Consensus 88 Hlv~r~~~~~~~ 99 (132)
|++++..+++.-
T Consensus 68 ~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 68 HLVLALRGGGGL 79 (88)
T ss_dssp EEECBCC-----
T ss_pred EEEEECCCCCCC
Confidence 999999887544
No 13
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2.3e-17 Score=110.92 Aligned_cols=83 Identities=24% Similarity=0.271 Sum_probs=71.6
Q ss_pred CcceEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 032861 3 DEELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~~~-~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~ 81 (132)
+...+.|.++..+|...+.+ ++++++||.+||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g--- 73 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-----FDVR--PECQRLFYRGKQLENGYTLFDYDVGLN--- 73 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-----SCCC--TTTEEEEETTEECCSSSBHHHHTCCTT---
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCeECCCCCCHHHCCCCCC---
Confidence 35678999999999434478 599999999999999988 2344 999999999999999999999999988
Q ss_pred CceEEEEEEecCCCccc
Q 032861 82 GGVIIMHVVVQPSLAKT 98 (132)
Q Consensus 82 ~~~~tmHlv~r~~~~~~ 98 (132)
.++||++++.+++.
T Consensus 74 ---~~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 74 ---DIIQLLVRPDSGPS 87 (89)
T ss_dssp ---CEEEEEECCCCSSC
T ss_pred ---CEEEEEEeCCCCCC
Confidence 78999999887753
No 14
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.73 E-value=1.3e-17 Score=116.99 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=65.4
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
++-++|.++...|+.+ .++++|++||++||++|+++ +++| +++|||||+||+|+|+.||++|+|++|
T Consensus 19 ~~mIqI~Vk~~~Gkk~-~v~v~p~DTI~~LK~~I~~k-----~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dg----- 85 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKV-RVKCLGEDSVGDFKKVLSLQ-----IGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQ----- 85 (93)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred CceEEEEEECCCCCEE-EEEECCcCHHHHHHHHHHHH-----hCCC--HHHEEEEeCCEEccCcCCHHHcCCCCC-----
Confidence 5668999999999766 68999999999999999988 4555 999999999999999999999999999
Q ss_pred eEEEEEE
Q 032861 84 VIIMHVV 90 (132)
Q Consensus 84 ~~tmHlv 90 (132)
+|+||.
T Consensus 86 -stLhL~ 91 (93)
T 3plu_A 86 -TNLELY 91 (93)
T ss_dssp -CEEEEE
T ss_pred -CEEEEE
Confidence 789984
No 15
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.7e-17 Score=117.51 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=64.7
Q ss_pred EEEEEEeCC----CCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 032861 7 IDIKFRLYD----GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (132)
Q Consensus 7 v~l~~rl~~----G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~ 82 (132)
..|++++.+ |. ..++++++++||++||++|+++ +++| +++|||||+||+|+|+.||++|+|++|
T Consensus 16 ati~V~~~~~~~~~~-~~~lev~~~~TV~~lK~kI~~k-----~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~g---- 83 (100)
T 1wju_A 16 ATIEVFLPPRLKKDR-KNLLETRLHITGRELRSKIAET-----FGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHN---- 83 (100)
T ss_dssp EEEEEECCTTTCCSS-SEEEEEESSSBHHHHHHHHHHH-----TTCC--STTCEEEETTEECCTTSBHHHHTCCSS----
T ss_pred EEEEEEecCCCCCCc-EEEEEeCCcCHHHHHHHHHHHH-----HCcC--HHHeEEEeCCeECCCCCcHHHcCCCCC----
Confidence 456667777 53 4479999999999999999998 3455 999999999999999999999999999
Q ss_pred ceEEEEEEecCCCccccc
Q 032861 83 GVIIMHVVVQPSLAKTKT 100 (132)
Q Consensus 83 ~~~tmHlv~r~~~~~~~~ 100 (132)
+++ +++++.+....+
T Consensus 84 --sti-~vl~lrg~~~~~ 98 (100)
T 1wju_A 84 --VKA-MVLELKQSSGPS 98 (100)
T ss_dssp --EEE-EEECCCCCCCSC
T ss_pred --CEE-EEEEECCCCccc
Confidence 778 566666665543
No 16
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.6e-17 Score=113.69 Aligned_cols=79 Identities=24% Similarity=0.371 Sum_probs=69.1
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
...+.|.++..+|..+ .+++++++||.+||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.+|
T Consensus 20 ~~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g----- 86 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 86 (98)
T ss_dssp --CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBSGGGTCCTT-----
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence 4568999999999655 78999999999999999998 2344 999999999999999999999999998
Q ss_pred eEEEEEEecCCCc
Q 032861 84 VIIMHVVVQPSLA 96 (132)
Q Consensus 84 ~~tmHlv~r~~~~ 96 (132)
.++||+++..++
T Consensus 87 -~~i~l~~rl~GG 98 (98)
T 4hcn_B 87 -STLHLVLRLRGG 98 (98)
T ss_dssp -EEEEEECBCSCC
T ss_pred -CEEEEEEecCCC
Confidence 789999998764
No 17
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=2.9e-17 Score=113.37 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=70.8
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCC-CcccccCCCCCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPG 82 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~-~tLs~~~I~~gd~~~ 82 (132)
...++|.+|..+| . +.+++++++||++||++|++. +++| +++|||+|+||.|+|+ .||++|+|.+|
T Consensus 13 ~~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~g---- 79 (94)
T 2kan_A 13 VRKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHIV-----ENTP--IKRMQLYYSGIELADDYRNLNEYGITEF---- 79 (94)
T ss_dssp SCCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHHH-----SSSC--TTTEEEEETTEEECCTTSBHHHHTCCTT----
T ss_pred CCCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCEECCCCcccHHHCCCCCC----
Confidence 3458899999888 4 478999999999999999998 3455 9999999999999999 99999999998
Q ss_pred ceEEEEEEecCCCccc
Q 032861 83 GVIIMHVVVQPSLAKT 98 (132)
Q Consensus 83 ~~~tmHlv~r~~~~~~ 98 (132)
.++||++++.++++
T Consensus 80 --stl~lv~r~~gg~~ 93 (94)
T 2kan_A 80 --SEIVVFLKSINRAK 93 (94)
T ss_dssp --EEEEEEECCCSSCC
T ss_pred --CEEEEEEeCCCCCC
Confidence 79999999988764
No 18
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.72 E-value=9.5e-18 Score=117.80 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=64.0
Q ss_pred cceEEEEEEeCCCC--eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCccccc--CCCCCC
Q 032861 4 EELIDIKFRLYDGS--DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGE 79 (132)
Q Consensus 4 ~~~v~l~~rl~~G~--~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~--~I~~gd 79 (132)
+..+.|+||+.+|. ++ .+++++++||++||++|+++++ +.|+ +++|||||+||+|+|+.||++| +|.++
T Consensus 21 ~~~m~I~VK~~~g~~~~i-~l~v~~~~TV~~LK~~I~~~~~----g~pp-~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~- 93 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQ-TISCFLNWTVGKLKTHLSNVYP----SKPL-TKDQRLVYSGRLLPDHLQLKDILRKQDEY- 93 (99)
T ss_dssp --CEEEEEECTTSSSCCE-EEEECTTSBHHHHHHHHHHHST----TCCC-TTTCCEEETTEEECTTSBTHHHHTTTCSE-
T ss_pred CCeEEEEEEcCCCCEEEE-EEEcCCCCHHHHHHHHHHHHhc----CCCC-hhhEEEEECCEECCCCCCHHHHhcCCCCC-
Confidence 45699999999996 33 6889999999999999999764 3331 6999999999999999999999 99988
Q ss_pred CCCceEEEEEE
Q 032861 80 VPGGVIIMHVV 90 (132)
Q Consensus 80 ~~~~~~tmHlv 90 (132)
.|||||
T Consensus 94 -----~tihLv 99 (99)
T 2kdb_A 94 -----HMVHLV 99 (99)
T ss_dssp -----EEEEEC
T ss_pred -----CEEEeC
Confidence 889985
No 19
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.72 E-value=5e-17 Score=107.99 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=65.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.+.|.++..+|..+ .+++++++||++||++|++.+. .+++| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 5 ~m~i~vk~~~g~~~-~~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------~ 73 (85)
T 2wyq_A 5 AVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEK------N 73 (85)
T ss_dssp CEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTT------S
T ss_pred eEEEEEEECCCCEE-EEEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCC------C
Confidence 47888999999555 6899999999999999999631 13455 999999999999999999999999998 6
Q ss_pred EEEEEecCCCc
Q 032861 86 IMHVVVQPSLA 96 (132)
Q Consensus 86 tmHlv~r~~~~ 96 (132)
++|++.+++.+
T Consensus 74 ~i~l~~~~~~~ 84 (85)
T 2wyq_A 74 FVVVMVTKTKA 84 (85)
T ss_dssp EEEEEEC----
T ss_pred EEEEEEcCCCC
Confidence 89999887643
No 20
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=107.23 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=68.1
Q ss_pred CcceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 032861 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~ 82 (132)
+.+.+.|+++..+|.. ..+++++++||++||++|++.. ++| +++|||+|.|+.|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~LK~~i~~~~-----~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g---- 71 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRE-CSLQVPEDELVSTLKQLVSEKL-----NVP--VRQQRLLFKGKALADGKRLSDYSIGPN---- 71 (81)
T ss_dssp SSSSEEEEEEETTSCE-EEEEECSSCBHHHHHHHHHHHT-----CCC--TTTCEEEETTEECCTTSBGGGGTCCSS----
T ss_pred CCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHH-----CcC--HHHEEEEECCeECCCCCcHHHcCCCCC----
Confidence 4667899999999954 4689999999999999999882 344 999999999999999999999999988
Q ss_pred ceEEEEEEecCC
Q 032861 83 GVIIMHVVVQPS 94 (132)
Q Consensus 83 ~~~tmHlv~r~~ 94 (132)
.++|++++++
T Consensus 72 --~~i~l~~~~~ 81 (81)
T 2dzi_A 72 --SKLNLVVKPL 81 (81)
T ss_dssp --BCCEEECCCC
T ss_pred --CEEEEEEeCC
Confidence 6799998863
No 21
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.71 E-value=4.5e-17 Score=110.85 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=67.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
++|.++..+|..+ .+++++++||.+||++|++. +++| ++.|||+|.|+.|+|+.+|++|+|.+| .+
T Consensus 2 m~i~vk~~~g~~~-~~~v~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~------~~ 67 (96)
T 3k9o_B 2 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 67 (96)
T ss_dssp CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred cEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhh-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------CE
Confidence 4688899999554 78999999999999999998 2344 999999999999999999999999988 68
Q ss_pred EEEEecCCCccccc
Q 032861 87 MHVVVQPSLAKTKT 100 (132)
Q Consensus 87 mHlv~r~~~~~~~~ 100 (132)
+|++++..++.+..
T Consensus 68 i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 68 LHLVLRLRGYADLR 81 (96)
T ss_dssp EEEEECCCC-----
T ss_pred EEEEEEcCCCCccc
Confidence 99999999887664
No 22
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=120.15 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=71.2
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
+..+.+++++..+.+...++++++.||++||++++++. ++| +++|||||+||+|+|++||++|||++|
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~-----~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g----- 80 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLL-----GIP--HSVLQIRYSGKILKNNETLVQHGVKPQ----- 80 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHH-----TCC--TTTEEEEETTEEECSSCCHHHHSCCSS-----
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhh-----CCC--hHHEEEEECCeEcCCcchHHHcCCCCC-----
Confidence 55688888865544666899999999999999999982 344 999999999999999999999999998
Q ss_pred eEEEEEEecCCCcccc
Q 032861 84 VIIMHVVVQPSLAKTK 99 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~ 99 (132)
.|+||+++...+..-
T Consensus 81 -~TIhLvi~s~~p~~~ 95 (118)
T 2daf_A 81 -EIVQVEIFSTNPDLY 95 (118)
T ss_dssp -CEEEEEEEESCTTTS
T ss_pred -CEEEEEEecCCCccC
Confidence 789999998877553
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.71 E-value=5e-17 Score=110.38 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=67.8
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
...++|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 15 ~~~m~i~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g----- 81 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 81 (91)
T ss_dssp CCSEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBTGGGTCCTT-----
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhh-----hCCC--hhhEEEEECCeECCCcCcHHHCCCCCC-----
Confidence 5668999999999654 68999999999999999988 2344 999999999999999999999999998
Q ss_pred eEEEEEEecC
Q 032861 84 VIIMHVVVQP 93 (132)
Q Consensus 84 ~~tmHlv~r~ 93 (132)
.++|+++|.
T Consensus 82 -~~i~l~~rl 90 (91)
T 3v6c_B 82 -STLHLVLRL 90 (91)
T ss_dssp -CEEEEECCC
T ss_pred -CEEEEEEec
Confidence 689999885
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=5.5e-17 Score=104.77 Aligned_cols=75 Identities=27% Similarity=0.413 Sum_probs=65.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|+++..+|..+ .+++++++||++||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.+| +++
T Consensus 2 ~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g------~~i 67 (76)
T 1ndd_A 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG------SVL 67 (76)
T ss_dssp EEEEECTTSCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBGGGGTCCTT------CEE
T ss_pred EEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHcCCCCC------CEE
Confidence 578888899554 78999999999999999988 2344 999999999999999999999999998 689
Q ss_pred EEEecCCCc
Q 032861 88 HVVVQPSLA 96 (132)
Q Consensus 88 Hlv~r~~~~ 96 (132)
|++++..++
T Consensus 68 ~l~~~~~GG 76 (76)
T 1ndd_A 68 HLVLALRGG 76 (76)
T ss_dssp EEEECCC--
T ss_pred EEEEeCCCC
Confidence 999998764
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=5.5e-17 Score=107.21 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=68.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
..++|.++..+|..+ .+++++++||.+||++|++.. ++| +++|||+|.|+.|+|+.+|++|+|.++
T Consensus 2 s~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~-----~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~------ 67 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLSDYNIQKW------ 67 (85)
T ss_dssp -CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHH-----CCC--GGGCEEEETTEECCTTSBTGGGTCCTT------
T ss_pred CeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHH-----CcC--hHHEEEEECCEECCCCCCHHHcCCCCC------
Confidence 357899999999554 789999999999999999882 344 999999999999999999999999988
Q ss_pred EEEEEEecCCCcc
Q 032861 85 IIMHVVVQPSLAK 97 (132)
Q Consensus 85 ~tmHlv~r~~~~~ 97 (132)
.++|++++..+++
T Consensus 68 ~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 68 STLFLLLRLRGGG 80 (85)
T ss_dssp CEEEEECCCCCC-
T ss_pred CEEEEEEECcCCC
Confidence 6899999988774
No 26
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=3.1e-17 Score=116.13 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=66.4
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
++.+.|.++...|..+ .+++++++||++||++|+++ +++| +++|||||+||+|+|+.||++|+|.++
T Consensus 26 ~~mm~I~VKtl~Gk~i-~lev~p~dTV~~lK~~Ia~k-----~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~g----- 92 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKV-RVKCNTDDTIGDLKKLIAAQ-----TGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDG----- 92 (100)
T ss_dssp CCEEEEEEECSSSSCE-EEEEETTSBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCSSCBHHHHTCCTT-----
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCCCCHHHcCCCCC-----
Confidence 5669999999999665 68999999999999999998 3455 999999999999999999999999998
Q ss_pred eEEEEEEe
Q 032861 84 VIIMHVVV 91 (132)
Q Consensus 84 ~~tmHlv~ 91 (132)
.|+||+-
T Consensus 93 -stlhL~~ 99 (100)
T 1uh6_A 93 -MNLELYY 99 (100)
T ss_dssp -EEEEEEC
T ss_pred -CEEEEEe
Confidence 7899863
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.2e-17 Score=108.55 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=66.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.++|.++..+|.. +.+++++++||.+||++|++.. ++| +++|||+|.|+.|+|+.+|++|+|.++ .
T Consensus 3 ~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~-----~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~------~ 68 (85)
T 3n3k_B 3 HMRIVVKTLMGRT-IILEVEPSDTIENVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLSDYNIHNH------S 68 (85)
T ss_dssp -CEEEEECGGGCE-EEEECCTTCBHHHHHHHHHHHH-----CCC--GGGEEEEETBEECCTTCBTTTTTCCTT------C
T ss_pred eEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHH-----CCC--HHHEEEEECCeECCCCCCHHHCCCCCC------C
Confidence 4678899899855 4789999999999999999882 344 999999999999999999999999998 6
Q ss_pred EEEEEecCCCcc
Q 032861 86 IMHVVVQPSLAK 97 (132)
Q Consensus 86 tmHlv~r~~~~~ 97 (132)
++|++++..+++
T Consensus 69 ~i~l~~rl~GG~ 80 (85)
T 3n3k_B 69 ALYLLLKLRGGG 80 (85)
T ss_dssp EEEEEECCC---
T ss_pred EEEEEEeccCCC
Confidence 899999988764
No 28
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-17 Score=114.13 Aligned_cols=75 Identities=21% Similarity=0.447 Sum_probs=63.3
Q ss_pred EEEEEEeCCCCeeeeEEeC--CcchHHHHHHHH-HhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCC-CCCCCCC
Q 032861 7 IDIKFRLYDGSDIGPFRYS--SASTVDMLKQRI-VSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPG 82 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~--~s~TV~~LK~~I-~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I-~~gd~~~ 82 (132)
+.|.||..+|..+ .++++ +++||++||++| ++. +++| +++|||||+||+|+|+.||++|+| ++|
T Consensus 2 mqI~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~---- 69 (87)
T 2lxa_A 2 VHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEE-----KASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN---- 69 (87)
T ss_dssp CEEEEEECSSSCE-ECCEECCTTCBHHHHHHHHHHTT-----SCSS--STTEEEEETTEECCTTCBHHHHCCCGGG----
T ss_pred EEEEEEcCCCCEE-EEEEcCCCCCcHHHHHHHHHHHh-----cCCC--hHHEEEEECCEECcCcCCHHHcCCCCCC----
Confidence 5788999999544 56655 999999999999 654 3566 999999999999999999999999 567
Q ss_pred ceEEEEEEecCCC
Q 032861 83 GVIIMHVVVQPSL 95 (132)
Q Consensus 83 ~~~tmHlv~r~~~ 95 (132)
+++||+.++.-
T Consensus 70 --stl~v~~~~~~ 80 (87)
T 2lxa_A 70 --STITVMIKPNL 80 (87)
T ss_dssp --CEEEEEECCCC
T ss_pred --CEEEEEcCCCc
Confidence 78999888753
No 29
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.71 E-value=5.1e-17 Score=113.96 Aligned_cols=78 Identities=22% Similarity=0.454 Sum_probs=65.0
Q ss_pred cceEEEEEEeCCCCeeeeE--EeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCC-CCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPF--RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEV 80 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~--~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I-~~gd~ 80 (132)
+..+.|.||+.+|..+ ++ ++++++||++||++|++.. +++| +++|||||+|++|+|+.+|++|+| ++|
T Consensus 17 ~~~m~I~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~----~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g-- 87 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEE----KASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN-- 87 (98)
T ss_dssp -CCEEEEEEECSSSCE-EEEEEECTTCBHHHHHHHHHHTT----SCSC--GGGEEEEETTEEECTTCBGGGSCCBTTB--
T ss_pred CCCEEEEEEcCCCCEE-EEEEecCCCChHHHHHHHHHHHh----cCCC--hhhEEEEECCEECcCcCCHHHcCcCCCC--
Confidence 5679999999999643 45 5669999999999994432 3566 999999999999999999999999 888
Q ss_pred CCceEEEEEEecCC
Q 032861 81 PGGVIIMHVVVQPS 94 (132)
Q Consensus 81 ~~~~~tmHlv~r~~ 94 (132)
.++|++++.+
T Consensus 88 ----~ti~lmvskp 97 (98)
T 4a20_A 88 ----STITVMIKPN 97 (98)
T ss_dssp ----CEEEEEECCC
T ss_pred ----CEEEEEEeCC
Confidence 6899988764
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=111.36 Aligned_cols=79 Identities=19% Similarity=0.126 Sum_probs=65.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.+.|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 4 ~m~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g------~ 69 (88)
T 2hj8_A 4 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------S 69 (88)
T ss_dssp EEEEEEEETTSCEE-EEEEESSSBHHHHHHHHHHH-----TCSC--TTTEEEESSSSCCCTTSBHHHHHCSTT------C
T ss_pred cEEEEEECCCCCEE-EEEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 47888888999554 78999999999999999988 3455 999999999999999999999999998 6
Q ss_pred EEEEEecCCCccc
Q 032861 86 IMHVVVQPSLAKT 98 (132)
Q Consensus 86 tmHlv~r~~~~~~ 98 (132)
++|+++++.+++.
T Consensus 70 ~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 70 TVFMNLRLRGGLE 82 (88)
T ss_dssp EEEEEEC------
T ss_pred EEEEEEEcCCCcc
Confidence 8999999887754
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.70 E-value=1.1e-16 Score=103.29 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=66.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|+++..+|..+ .+++++++||++||++|++.. ++| +++|||+|.|+.|+|+.+|++|+|.+| .++
T Consensus 2 ~i~vk~~~g~~~-~i~v~~~~tv~~lK~~i~~~~-----~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g------~~i 67 (76)
T 3a9j_A 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLSDYNIQRE------STL 67 (76)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHH-----CCC--GGGEEEEETTEECCTTCBTGGGTCCTT------CEE
T ss_pred EEEEEcCCCCEE-EEEECCCCcHHHHHHHHHHHH-----CcC--HHHeEEEECCeECCCCCcHHHcCCCCC------CEE
Confidence 578888999554 789999999999999999882 344 999999999999999999999999988 689
Q ss_pred EEEecCCCc
Q 032861 88 HVVVQPSLA 96 (132)
Q Consensus 88 Hlv~r~~~~ 96 (132)
|+++++.++
T Consensus 68 ~l~~~~~GG 76 (76)
T 3a9j_A 68 HLVLRLRGG 76 (76)
T ss_dssp EEEECCCCC
T ss_pred EEEEeCCCC
Confidence 999998764
No 32
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.69 E-value=1.6e-16 Score=103.35 Aligned_cols=73 Identities=29% Similarity=0.365 Sum_probs=63.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.+.|+++. +|. .+.+++++++||++||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.+| .
T Consensus 4 ~m~i~vk~-~g~-~~~~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g------~ 68 (77)
T 2bwf_A 4 SLNIHIKS-GQD-KWEVNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDG------H 68 (77)
T ss_dssp EEEEEEEE-TTE-EEEEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred EEEEEEEE-CCE-EEEEEECCCCcHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCCHHHcCCCCC------C
Confidence 37888888 784 4578999999999999999988 2344 999999999999999999999999998 6
Q ss_pred EEEEEecC
Q 032861 86 IMHVVVQP 93 (132)
Q Consensus 86 tmHlv~r~ 93 (132)
++|++.++
T Consensus 69 ~i~l~~~~ 76 (77)
T 2bwf_A 69 SVHLVKSQ 76 (77)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 89998765
No 33
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.69 E-value=7.4e-17 Score=111.49 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=69.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
..+.|.++..+|..+ .+++++++||++||++|+++ +++| +++|||||.|+.|+|+.||++|+|.+|
T Consensus 20 ~~m~I~Vk~~~g~~~-~l~v~~~~tv~~lK~~i~~~-----~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g------ 85 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEE------ 85 (97)
T ss_dssp CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCHHHHTCCTT------
T ss_pred CcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCCC--hhhEEEEECCeEcCCCCCHHHCCCCCC------
Confidence 348999999999665 68999999999999999988 3444 999999999999999999999999999
Q ss_pred EEEEEEecCCCc
Q 032861 85 IIMHVVVQPSLA 96 (132)
Q Consensus 85 ~tmHlv~r~~~~ 96 (132)
.++|++++..++
T Consensus 86 ~~I~l~~~~~GG 97 (97)
T 1wyw_B 86 DVIEVYQEQTGG 97 (97)
T ss_dssp CEEEEEESSSCC
T ss_pred CEEEEEEecCCC
Confidence 689999998764
No 34
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1.7e-16 Score=108.45 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=70.0
Q ss_pred CCcceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCC-CcccccCCCCCCC
Q 032861 2 PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEV 80 (132)
Q Consensus 2 ~~~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~-~tLs~~~I~~gd~ 80 (132)
|++..+.|.++..+|.. +.+++++++||++||++|++.. +++|||||.|+.|+|+ .+|++|+|.+|
T Consensus 3 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~~~----------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g-- 69 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFPGQ----------ESQMKLIYQGRLLQDPARTLSSLNITNN-- 69 (95)
T ss_dssp CCCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSSST----------TTTCEEEETTEECCCSSCBTTTTTCCTT--
T ss_pred CCCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHhhC----------cCcEEEEECCEEccCCcCCHHHcCCCCC--
Confidence 56788999999999954 4789999999999999999872 7899999999999999 99999999998
Q ss_pred CCceEEEEEEecCCCccc
Q 032861 81 PGGVIIMHVVVQPSLAKT 98 (132)
Q Consensus 81 ~~~~~tmHlv~r~~~~~~ 98 (132)
.+|||+++.+.+..
T Consensus 70 ----~~i~l~~~~~~~~~ 83 (95)
T 1wia_A 70 ----CVIHCHRSPPGAAV 83 (95)
T ss_dssp ----EEEEEECCCCCCCC
T ss_pred ----CEEEEEECCCCCCC
Confidence 78999998665543
No 35
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.6e-16 Score=115.24 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=65.7
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
+..+.|.|+.. |.. +.+++++++||.+||++|++. +++| +++|||||.|+.|+|+.||++|+|.+|
T Consensus 30 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g----- 95 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEK-EEFAVPENSSVQQFKEAISKR-----FKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDG----- 95 (125)
T ss_dssp CCCEEEEEECS-SCE-EEEEECTTCCHHHHHHHHHHH-----HCSC--SSSEEEEETTEEESTTSCGGGTTCSSS-----
T ss_pred CCcEEEEEEeC-CeE-EEEEECCCCcHHHHHHHHHHH-----HCcC--cceEEEEECCEEcCCCCCHHHcCCCCC-----
Confidence 45689999988 755 478999999999999999988 2344 999999999999999999999999988
Q ss_pred eEEEEEEecCCCccccccceeeEEEEe
Q 032861 84 VIIMHVVVQPSLAKTKTVHFGVMLELD 110 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~~~k~~~~~~~~ 110 (132)
.+|||++++.+++..-...++-|+-+
T Consensus 96 -stI~lv~~~~gg~~~~~~~~~~~~~~ 121 (125)
T 1j8c_A 96 -LTVHLVIKRDPNSSSVDKYAAALEHH 121 (125)
T ss_dssp -EEEEEEEC------------------
T ss_pred -CEEEEEeccCCCCCCcchhhhhhhhc
Confidence 78999999888766644466666543
No 36
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=7.6e-17 Score=109.23 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=65.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCee-cCCCCcccccCCCCCCCCCce
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI-LENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~-LeD~~tLs~~~I~~gd~~~~~ 84 (132)
-..|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|+. |+|+.+|++|+|.+|
T Consensus 10 ~~~i~vk~l~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~g------ 75 (84)
T 2kk8_A 10 HMKFLVENLNGSSF-ELEVDYRDTLLVVKQKIERS-----QHIP--VSKQTLIVDGIVILREDLTVEQCQIVPT------ 75 (84)
T ss_dssp CEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCCSSSBHHHHTCCTT------
T ss_pred ceEEEEEecCCcEE-EEEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEEecCCcCCHHHcCCCCC------
Confidence 35788888999655 78999999999999999998 3455 999999999999 999999999999998
Q ss_pred EEEEEEecC
Q 032861 85 IIMHVVVQP 93 (132)
Q Consensus 85 ~tmHlv~r~ 93 (132)
+++|++++|
T Consensus 76 s~i~lv~~p 84 (84)
T 2kk8_A 76 SDIQLEVSS 84 (84)
T ss_dssp SCEEEEECC
T ss_pred CEEEEEEcC
Confidence 679999875
No 37
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.1e-16 Score=111.53 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=69.9
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
...+.|.++..+| .+ .+++++++||++||++|++. +++| +++|||+|.|+.|+|+.||++|+|.+|
T Consensus 20 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~g----- 85 (100)
T 1yqb_A 20 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDG----- 85 (100)
T ss_dssp TTEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBHHHHTCCTT-----
T ss_pred CCeEEEEEEcCCC-cE-EEEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHCCCCCC-----
Confidence 4568999999999 44 78999999999999999988 2344 999999999999999999999999998
Q ss_pred eEEEEEEecCCCcc
Q 032861 84 VIIMHVVVQPSLAK 97 (132)
Q Consensus 84 ~~tmHlv~r~~~~~ 97 (132)
.++||++++.+++
T Consensus 86 -stI~l~~r~~~~p 98 (100)
T 1yqb_A 86 -LTVHLVIKRQHRA 98 (100)
T ss_dssp -CEEEEEECCCCSC
T ss_pred -CEEEEEEcCCCCC
Confidence 6899999987765
No 38
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.1e-16 Score=108.53 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
..|.++..+|.. +.+++++++||++||++|++. +++| +++|||+|+|+.|+|+.||++|+|.+| ++
T Consensus 10 ~~i~v~~~~G~~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~ 75 (88)
T 1sif_A 10 LQLFIKTLTGKT-FTVEMEPSDTIENLKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 75 (88)
T ss_dssp CEEEEEETTSCE-EEEECCTTSBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBSGGGTCCTT------CE
T ss_pred eEEEEEeCCCCE-EEEEECCCChHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCcHHHcCCCCC------CE
Confidence 578899999955 478999999999999999988 2344 999999999999999999999999988 68
Q ss_pred EEEEecCCCcc
Q 032861 87 MHVVVQPSLAK 97 (132)
Q Consensus 87 mHlv~r~~~~~ 97 (132)
+|+++++.+++
T Consensus 76 i~l~~r~~GG~ 86 (88)
T 1sif_A 76 LHLVLRLRGGG 86 (88)
T ss_dssp EEEEC------
T ss_pred EEEEEeCCCCC
Confidence 99999988763
No 39
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.68 E-value=1.7e-16 Score=112.28 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=69.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
..++|+++..+|..+ .+++++++||.+||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.+|
T Consensus 34 ~~m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g------ 99 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 99 (111)
T ss_dssp GCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTTTTTCCTT------
T ss_pred ccEEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----hCCC--hHHEEEEECCEECCCCCcHHHCCCCCC------
Confidence 468999999999654 78999999999999999998 2344 999999999999999999999999998
Q ss_pred EEEEEEecCCCc
Q 032861 85 IIMHVVVQPSLA 96 (132)
Q Consensus 85 ~tmHlv~r~~~~ 96 (132)
+++||+++..++
T Consensus 100 s~I~l~~rl~GG 111 (111)
T 3vdz_A 100 STLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECCCC-
T ss_pred CEEEEEEecCCC
Confidence 789999998764
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=7.3e-17 Score=110.34 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=69.2
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
++.+.|+++.. |..+ .+++++++||.+||++|++. +++| +++|||+|.|+.|+|+.||++|+|.+|
T Consensus 15 ~~~m~i~Vk~~-g~~~-~~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g----- 80 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCH-EFFLAENSNVRRFKKQISKY-----LHCN--ADRLVLIFTGKILRDQDILSQRGILDG----- 80 (96)
T ss_dssp SCEEEEEEECS-SSEE-EEEEETTCCHHHHHHHHHHH-----TCSC--TTTBCCEETTEECCTTSCHHHHTCCTT-----
T ss_pred CCcEEEEEEEC-CeEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCcCCHHHCCCCCC-----
Confidence 46688999888 7554 78999999999999999998 2344 999999999999999999999999998
Q ss_pred eEEEEEEecCCCcc
Q 032861 84 VIIMHVVVQPSLAK 97 (132)
Q Consensus 84 ~~tmHlv~r~~~~~ 97 (132)
.++||++++.+++
T Consensus 81 -~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 81 -STVHVVVRSHSGP 93 (96)
T ss_dssp -EEEECCBCCSSCS
T ss_pred -CEEEEEEeCCCCC
Confidence 7899999987764
No 41
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=3e-16 Score=107.71 Aligned_cols=80 Identities=26% Similarity=0.354 Sum_probs=67.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|.++..+|..+ .+++++++||++||++|++.+. .+++| +++|||+|+|+.|+|+.+|++|+|.+| .++
T Consensus 2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTF-KIDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEK------NFV 70 (95)
T ss_dssp EEEEEETTCCEE-EEECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSS------SEE
T ss_pred EEEEEeCCCCEE-EEEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCC------CEE
Confidence 578888999655 7899999999999999998731 13455 999999999999999999999999998 689
Q ss_pred EEEecCCCccc
Q 032861 88 HVVVQPSLAKT 98 (132)
Q Consensus 88 Hlv~r~~~~~~ 98 (132)
|++++.+.+.+
T Consensus 71 ~l~~~~~~~~~ 81 (95)
T 1uel_A 71 VVMVTKPKAVS 81 (95)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99887655443
No 42
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.4e-17 Score=112.84 Aligned_cols=76 Identities=24% Similarity=0.417 Sum_probs=64.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
+.|+||..+|.. +.+++++++||.+||++|++.. ++| +++|||||+|++|+|+.+|++|+|.+| .+
T Consensus 2 m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~~~-----gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g------~~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEK-VPLDLEPSNTILETKTKLAQSI-----SCE--ESQIKLIYSGKVLQDSKTVSECGLKDG------DQ 67 (106)
T ss_dssp -CEEEECTTCCE-EEECCCTTSBHHHHHHHHHHTT-----TSC--GGGCEEEETTEECCTTSBTTTTTCCTT------CE
T ss_pred EEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHH-----CCC--hhhEEEEECCEECCCcCCHHHcCCCCC------CE
Confidence 468888899955 4789999999999999999983 355 999999999999999999999999998 68
Q ss_pred EEEEecCCCc
Q 032861 87 MHVVVQPSLA 96 (132)
Q Consensus 87 mHlv~r~~~~ 96 (132)
+||+++.+.+
T Consensus 68 i~lv~~~~~~ 77 (106)
T 3m62_B 68 VVFMVSQKKS 77 (106)
T ss_dssp EEEECCC---
T ss_pred EEEEEcCCCC
Confidence 9999986554
No 43
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.67 E-value=1.2e-16 Score=116.11 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=62.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCC-CCce
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV 84 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~-~~~~ 84 (132)
++.|+++. |+....+++++++||++||++|++. +++| +++|||||+||+|+|++||++|+|.+... +...
T Consensus 2 ~mfl~ir~--~ktti~lev~~sdTV~~lK~kI~~~-----egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~ 72 (118)
T 2fnj_B 2 DVFLMIRR--HKTTIFTDAKESSTVFELKRIVEGI-----LKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAP 72 (118)
T ss_dssp EEEEEEEE--BTEEEEEEEETTSBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBC
T ss_pred cEEEEEec--CCEEEEEEeCCcChHHHHHHHHHHH-----hCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCC
Confidence 45666654 4444568999999999999999987 4566 99999999999999999999999994110 0011
Q ss_pred EEEEEEecCCCc
Q 032861 85 IIMHVVVQPSLA 96 (132)
Q Consensus 85 ~tmHlv~r~~~~ 96 (132)
+|+||++| .++
T Consensus 73 stL~L~lr-~~g 83 (118)
T 2fnj_B 73 ATVGLAFR-ADD 83 (118)
T ss_dssp EEEEEEEB-SSS
T ss_pred CEEEEEec-CCC
Confidence 89999999 443
No 44
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.2e-16 Score=113.72 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=69.0
Q ss_pred CCcceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCC-------------CcceEEEecCeecC-CC
Q 032861 2 PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKA-------------VTEIKLISSGKILE-NN 67 (132)
Q Consensus 2 ~~~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~-------------~~~qrLIy~Gk~Le-D~ 67 (132)
|+..+..|++++.+|..+ +++|++++||++||++|++.. ++|+. +++|||||+|++|. |+
T Consensus 3 ~~~~~M~I~Vk~l~g~~~-~v~V~~~~TV~dLK~~I~~~~-----~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~ 76 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVM-PVVVVQNATVLDLKKAIQRYV-----QLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDR 76 (105)
T ss_dssp CCCCSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHH-----HHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSS
T ss_pred CCCCcEEEEEEecCCCEE-EEEECCCChHHHHHHHHHHHh-----CCCcccccCcceeeeeecceeEEEEeCCcCccCCc
Confidence 345679999999999665 799999999999999999882 22210 25789999999995 67
Q ss_pred CcccccCCCCCCCCCceEEEEEEecCCCc
Q 032861 68 KTVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (132)
Q Consensus 68 ~tLs~~~I~~gd~~~~~~tmHlv~r~~~~ 96 (132)
+||++|+|.+| .++|++++..+.
T Consensus 77 ~tL~dygI~~g------~~l~lv~~lr~~ 99 (105)
T 1v2y_A 77 KKLRDYGIRNR------DEVSFIKKLGQK 99 (105)
T ss_dssp SBHHHHTCCSS------EEEEEEECSCSC
T ss_pred CCHHHcCCCCC------CEEEEEehhccC
Confidence 99999999999 789999998765
No 45
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.67 E-value=3.1e-16 Score=111.32 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=70.1
Q ss_pred ceEEEEEEeCC----------CCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccC
Q 032861 5 ELIDIKFRLYD----------GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (132)
Q Consensus 5 ~~v~l~~rl~~----------G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~ 74 (132)
..|.|++++.+ | ..+.+++++++||.+||++|++. +++| +++|||+|+|+.|+|+.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G-~~~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~ 95 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNG-QGLVFTLPLTDQVSVIKVKIHEA-----TGMP--AGKQKLQYEGIFIKDSNSLAYYN 95 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSS-EEEEEEECSCSBTHHHHHHHHHH-----SSCC--TTTEEEEETTEEECTTSBHHHHT
T ss_pred CCEEEEEEcCCCccccccccCC-eEEEEEECCCCCHHHHHHHHHHH-----HCCC--hHHEEEEECCEECCCCCCHHHCC
Confidence 36888888875 5 45578999999999999999988 2455 99999999999999999999999
Q ss_pred CCCCCCCCceEEEEEEecCCCcccc
Q 032861 75 IPYGEVPGGVIIMHVVVQPSLAKTK 99 (132)
Q Consensus 75 I~~gd~~~~~~tmHlv~r~~~~~~~ 99 (132)
|.+| +++||+++..+++++
T Consensus 96 i~~g------~~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 96 MASG------AVIHLALKERSGPSS 114 (115)
T ss_dssp CCSS------CEEEEEECCCSCCSC
T ss_pred CCCC------CEEEEEEEcCCCCCC
Confidence 9988 789999999988543
No 46
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.66 E-value=3.8e-16 Score=118.26 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=69.9
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
+|.+|+.+|..+ .+++++++||.+||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| .++
T Consensus 2 qI~Vk~~~Gk~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~g------stI 67 (169)
T 3l0w_B 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (169)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCTTSBGGGGTCCTT------CEE
T ss_pred EEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCccccCcCcHHHcCCCCC------CEE
Confidence 688899999655 68999999999999999988 2345 999999999999999999999999998 789
Q ss_pred EEEecCCCccccccc
Q 032861 88 HVVVQPSLAKTKTVH 102 (132)
Q Consensus 88 Hlv~r~~~~~~~~~k 102 (132)
||+++..++.+...|
T Consensus 68 ~Lvlrl~GG~k~~vk 82 (169)
T 3l0w_B 68 HLVLRLRGGGGETIK 82 (169)
T ss_dssp EEEECCCC---CCEE
T ss_pred EEEEEeccccccccc
Confidence 999999999887665
No 47
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-16 Score=108.19 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=67.5
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
...+.|.++.. |.. +.+++++++||++||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.+|
T Consensus 23 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g----- 88 (101)
T 2klc_A 23 PKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISKR-----FKSH--TDQLVLIFAGKILKDQDTLSQHGIHDG----- 88 (101)
T ss_dssp CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHHH-----HTCC--GGGEEEEETTEEECTTCCTGGGTCCTT-----
T ss_pred CCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCC-----
Confidence 45688999988 644 578999999999999999988 2344 999999999999999999999999988
Q ss_pred eEEEEEEecCCCc
Q 032861 84 VIIMHVVVQPSLA 96 (132)
Q Consensus 84 ~~tmHlv~r~~~~ 96 (132)
.++||++++++.
T Consensus 89 -~~I~l~~~~~~~ 100 (101)
T 2klc_A 89 -LTVHLVIKTQNR 100 (101)
T ss_dssp -CEEEEEECCSSC
T ss_pred -CEEEEEEcCCCC
Confidence 689999987653
No 48
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.66 E-value=4.8e-16 Score=114.32 Aligned_cols=78 Identities=19% Similarity=0.132 Sum_probs=66.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.+.|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|+.|+|+.||++|+|.+| +
T Consensus 81 ~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g------~ 146 (159)
T 3rt3_B 81 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------S 146 (159)
T ss_dssp CEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTCCTT------C
T ss_pred cEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHH-----HCCC--HHHEEEEECCeecCCCCCHHHcCCCCC------C
Confidence 36777888899554 78999999999999999988 3455 999999999999999999999999998 7
Q ss_pred EEEEEecCCCcc
Q 032861 86 IMHVVVQPSLAK 97 (132)
Q Consensus 86 tmHlv~r~~~~~ 97 (132)
++|++++..+++
T Consensus 147 ~l~l~~rl~GG~ 158 (159)
T 3rt3_B 147 TVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECCC---
T ss_pred EEEEEEecCCCC
Confidence 899999998875
No 49
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=108.05 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=64.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.+.|.++. |.. ..+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 19 ~m~I~Vk~--g~~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~g------s 82 (93)
T 2l7r_A 19 SMQLFVRA--QEL-HTFEVTGQETVAQIKAHVASL-----EGIA--PEDQVVLLAGAPLEDEATLGQCGVEAL------T 82 (93)
T ss_dssp -CEEEEES--SSE-EEEECCSSCBHHHHHHHHHHH-----HTCC--GGGCEEEETTEECCTTSBHHHHTCCSS------C
T ss_pred cEEEEEEC--CCE-EEEEeCCCCcHHHHHHHHHHH-----hCcC--hhHEEEEECCEECCCCCcHHHCCCCCC------C
Confidence 36677776 644 578999999999999999988 2344 999999999999999999999999988 7
Q ss_pred EEEEEecCCCc
Q 032861 86 IMHVVVQPSLA 96 (132)
Q Consensus 86 tmHlv~r~~~~ 96 (132)
++|+++++.++
T Consensus 83 tI~lv~rl~GG 93 (93)
T 2l7r_A 83 TLEVAGRMLGG 93 (93)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEEecCCC
Confidence 89999998764
No 50
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=6.2e-16 Score=108.36 Aligned_cols=78 Identities=23% Similarity=0.295 Sum_probs=68.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
..+.|.+++.+|.. +.+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 22 ~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------ 87 (106)
T 1ttn_A 22 YECQLRLRLSTGKD-LKLVVRSTDTVFHMKRRLHAA-----EGVE--PGSQRWFFSGRPLTDKMKFEELKIPKD------ 87 (106)
T ss_dssp CSEEEEEEETTTEE-EEEEECTTSHHHHHHHHHHHT-----TCCC--STTCEEEETTEECCTTSHHHHCCCSSS------
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence 34889999999954 468999999999999999987 2355 999999999999999999999999998
Q ss_pred EEEEEEecCCCc
Q 032861 85 IIMHVVVQPSLA 96 (132)
Q Consensus 85 ~tmHlv~r~~~~ 96 (132)
.++||+++.+.+
T Consensus 88 ~ti~lv~~~~~~ 99 (106)
T 1ttn_A 88 YVVQVIVSQPVQ 99 (106)
T ss_dssp CEEEEECCCSSC
T ss_pred CEEEEEEeCCCC
Confidence 789999986654
No 51
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.65 E-value=7.6e-16 Score=105.76 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=66.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|+++..+|..+ .+++++++||++||++|++.. ++| +++|||+|.|+.|+|+.+|++|+|.+| .++
T Consensus 2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~-----gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~i 67 (98)
T 1yx5_B 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (98)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHT-----CCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CEE
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHH-----CcC--hhhEEEEECCEECCCCCCHHHcCCCCC------CEE
Confidence 578888999554 789999999999999999882 344 999999999999999999999999998 689
Q ss_pred EEEecCCCcccc
Q 032861 88 HVVVQPSLAKTK 99 (132)
Q Consensus 88 Hlv~r~~~~~~~ 99 (132)
|++.+..++..-
T Consensus 68 ~l~~~~~gG~~i 79 (98)
T 1yx5_B 68 HLVLRLRGGRDP 79 (98)
T ss_dssp EEEECCCCC---
T ss_pred EEEEeCCCCCcC
Confidence 999998876544
No 52
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=7e-16 Score=107.79 Aligned_cols=81 Identities=22% Similarity=0.387 Sum_probs=70.3
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
...+.|+++..+| .+ .+++++++||.+||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.+|
T Consensus 15 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g----- 80 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDG----- 80 (106)
T ss_dssp SSEEEEEEECSSC-EE-EEEEETTCCHHHHHHHHHHH-----HTCC--TTTEEEEETTEECCTTSCHHHHTCCTT-----
T ss_pred CceEEEEEEeCCC-cE-EEEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCC-----
Confidence 4458899999988 44 78999999999999999988 2344 999999999999999999999999988
Q ss_pred eEEEEEEecCCCcccc
Q 032861 84 VIIMHVVVQPSLAKTK 99 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~ 99 (132)
.+|||+++..+++..
T Consensus 81 -~~i~l~~~~~~~~~~ 95 (106)
T 1wx7_A 81 -LTVHLVIKRQHRAMG 95 (106)
T ss_dssp -EEEEEEECCCCCSCC
T ss_pred -CEEEEEEcCCCCCCC
Confidence 789999998776543
No 53
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=4.1e-16 Score=109.91 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=69.4
Q ss_pred ceEEEEEEeC---CCCeeeeEEeCC-cchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCC
Q 032861 5 ELIDIKFRLY---DGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (132)
Q Consensus 5 ~~v~l~~rl~---~G~~i~~~~v~~-s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~ 80 (132)
..++|.+++. +|.. +.+++++ ++||.+||++|++. +++| +++|||+|.|++|+|+.+|++|+|.+|
T Consensus 26 ~~i~i~Vk~~~~~~g~~-~~l~v~~l~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g-- 95 (111)
T 1we6_A 26 GPATIRVSKPNENDGQF-MEITVQSLSENVGSLKEKIAGE-----IQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAG-- 95 (111)
T ss_dssp SCEEEEECCTTCSSSCC-EEEEESCSSSBHHHHHHHHHHH-----TTCC--TTTSEEECSSSBCCTTSBTTTTTCSSS--
T ss_pred CcEEEEEEecccCCCcE-EEEEecCCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCcHHHCCCCCC--
Confidence 3588999988 7744 5789998 99999999999988 2455 999999999999999999999999988
Q ss_pred CCceEEEEEEecCCCcc
Q 032861 81 PGGVIIMHVVVQPSLAK 97 (132)
Q Consensus 81 ~~~~~tmHlv~r~~~~~ 97 (132)
.++||+++..+++
T Consensus 96 ----~~l~l~~r~~GGk 108 (111)
T 1we6_A 96 ----EILTLSLRERSGP 108 (111)
T ss_dssp ----CEEEEECSSCCSS
T ss_pred ----CEEEEEEEcCCCC
Confidence 6899999998874
No 54
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=9.5e-16 Score=109.20 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=70.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
...|.+++.+|.. ..+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 9 ~~~i~vk~l~G~~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------s 74 (114)
T 2kdi_A 9 EFQIFAKTLTGKT-ITLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRE------S 74 (114)
T ss_dssp CCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTTTTTCCSS------C
T ss_pred cEEEEEEeCCCcE-EEEEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHCCCCCC------C
Confidence 3678889999955 478999999999999999988 2344 999999999999999999999999988 6
Q ss_pred EEEEEecCCCcccc
Q 032861 86 IMHVVVQPSLAKTK 99 (132)
Q Consensus 86 tmHlv~r~~~~~~~ 99 (132)
++||++++.++..-
T Consensus 75 tI~l~~~~~GG~~~ 88 (114)
T 2kdi_A 75 TLHLVLRLRGGSMG 88 (114)
T ss_dssp EEEEEECCCSSCCC
T ss_pred EEEEEEEcCCCcee
Confidence 89999999887544
No 55
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.64 E-value=6e-16 Score=112.56 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=63.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCC-CCce
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV 84 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~-~~~~ 84 (132)
.++|+++-.. ....+++++++||.+||++|++. +++| +++|||||+||+|+|++||++|||..+.. +...
T Consensus 2 ~vFl~Ikr~k--tTI~ldve~sdTV~~lK~kI~~~-----~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~ 72 (118)
T 4ajy_B 2 DVFLMIRRHK--TTIFTDAKESSTVFELKRIVEGI-----LKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAP 72 (118)
T ss_dssp EEEEEEEEBT--EEEEEEEETTSBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBC
T ss_pred ceEEEEecCC--EEEEEEcCCCChHHHHHHHHHHH-----HCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCC
Confidence 4666665544 34467999999999999999987 3455 99999999999999999999999998222 2223
Q ss_pred EEEEEEecC
Q 032861 85 IIMHVVVQP 93 (132)
Q Consensus 85 ~tmHlv~r~ 93 (132)
+|+||++|.
T Consensus 73 atl~Lvlr~ 81 (118)
T 4ajy_B 73 ATVGLAFRA 81 (118)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEEec
Confidence 899999996
No 56
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=8.4e-16 Score=107.03 Aligned_cols=83 Identities=8% Similarity=0.103 Sum_probs=68.9
Q ss_pred cceEEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCC-CcccccCCCCCC
Q 032861 4 EELIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGE 79 (132)
Q Consensus 4 ~~~v~l~~rl~~G~---~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~-~tLs~~~I~~gd 79 (132)
...+.|+|++.+|. ..+.+++++++||++||++|++. +++| +++|||+|.|+.|+|+ .||++|+|.+|
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g- 76 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-----SGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDG- 76 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-----TCCC--GGGBCEEETTEEECCSSSBHHHHTCCTT-
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCEECCCCcccHHHCCCCCC-
Confidence 34477888887653 45678999999999999999988 2455 9999999999999887 79999999998
Q ss_pred CCCceEEEEEEecCCCcccc
Q 032861 80 VPGGVIIMHVVVQPSLAKTK 99 (132)
Q Consensus 80 ~~~~~~tmHlv~r~~~~~~~ 99 (132)
.++||+.+..++...
T Consensus 77 -----~~l~l~~~~~gg~~~ 91 (102)
T 1v5o_A 77 -----DMVVLLQKDNVGLRT 91 (102)
T ss_dssp -----EEEEECBCCCCCCSS
T ss_pred -----CEEEEEECCCCCCCC
Confidence 789999987776544
No 57
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=107.42 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=68.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
..+.|+++..+|..+ .+++++++||++||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.+|
T Consensus 34 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g------ 99 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 99 (111)
T ss_dssp SCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCSSCBTTTTTCCTT------
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence 468999999999554 68999999999999999988 2344 999999999999999999999999988
Q ss_pred EEEEEEecCCCc
Q 032861 85 IIMHVVVQPSLA 96 (132)
Q Consensus 85 ~tmHlv~r~~~~ 96 (132)
+++|++++..++
T Consensus 100 s~I~l~~rl~GG 111 (111)
T 2ojr_A 100 STLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECCCC-
T ss_pred CEEEEEEeCCCC
Confidence 689999998764
No 58
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=113.98 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=71.3
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
+..++|.++..+|.. ..+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 18 ~~~m~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~-----~gip--~~~QrL~~~g~~L~d~~tL~~~~i~~~----- 84 (172)
T 3u30_A 18 GSHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 84 (172)
T ss_dssp -CCEEEEEEETTTEE-EEEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTGGGTCCTT-----
T ss_pred CCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCccccccCCHhHcCCccc-----
Confidence 556899999999955 479999999999999999988 3344 999999999999999999999999998
Q ss_pred eEEEEEEecCCCcccc
Q 032861 84 VIIMHVVVQPSLAKTK 99 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~ 99 (132)
.++||+++..++..-
T Consensus 85 -~~l~l~~~~~gg~~i 99 (172)
T 3u30_A 85 -STLHLVLRLRGGMQI 99 (172)
T ss_dssp -CEEEEEECCCCCEEE
T ss_pred -ceeeeeecccccccc
Confidence 689999998876544
No 59
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.2e-15 Score=107.24 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=67.2
Q ss_pred cceEEEEEEeCCC---CeeeeEEe--------CCc-chHHHHHHHHHhhCCCCcccCCCCCcc-eEEEecCeecCCCCcc
Q 032861 4 EELIDIKFRLYDG---SDIGPFRY--------SSA-STVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISSGKILENNKTV 70 (132)
Q Consensus 4 ~~~v~l~~rl~~G---~~i~~~~v--------~~s-~TV~~LK~~I~~~~p~d~e~~P~~~~~-qrLIy~Gk~LeD~~tL 70 (132)
+..+.|+||..+| ..+ .++| +++ +||.+||++|++..| +++| +++ |||||.||.|+|+.+|
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~-~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip--~~~~qrLi~~Gk~L~D~~tL 83 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKS-ILQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVP--DPELIDLIYCGRKLKDDQTL 83 (107)
T ss_dssp CCSCCEEEEETTCTTSCCE-EECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCC--CSSSEEEEETTEECCTTCBH
T ss_pred CCceEEEEEeCCCCCccEE-EEEecCccccccCcccCCHHHHHHHHHHHhc---cCCC--hhhcEEEEECCeECCCCCcH
Confidence 3457888998888 444 5774 444 999999999999853 2566 899 9999999999999999
Q ss_pred cccCCCCCCCCCceEEEEEEecCCCcc
Q 032861 71 GQCKIPYGEVPGGVIIMHVVVQPSLAK 97 (132)
Q Consensus 71 s~~~I~~gd~~~~~~tmHlv~r~~~~~ 97 (132)
++|+|.+| .++||++++.+.+
T Consensus 84 ~~y~i~~g------~~i~lv~~~~~~~ 104 (107)
T 1x1m_A 84 DFYGIQPG------STVHVLRKSWSGP 104 (107)
T ss_dssp HHHTCCTT------CEEEEEESSCCSS
T ss_pred HHcCCCCC------CEEEEEeCCCCCC
Confidence 99999998 6899999876543
No 60
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=5e-16 Score=108.55 Aligned_cols=73 Identities=29% Similarity=0.377 Sum_probs=62.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.+.|+++. +|.. +.+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 28 ~i~I~Vk~-~g~~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g------~ 92 (101)
T 3m63_B 28 SLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDG------H 92 (101)
T ss_dssp -CCEEEEC-SSCC-CCBCCCTTSBHHHHHHHHHHH-----HSCC--STTCCEEETTEECCTTSBTTTTTCCTT------E
T ss_pred EEEEEEEE-CCEE-EEEEeCCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCcCcHHHCCCCCC------C
Confidence 46777776 6644 468999999999999999988 2344 999999999999999999999999998 7
Q ss_pred EEEEEecC
Q 032861 86 IMHVVVQP 93 (132)
Q Consensus 86 tmHlv~r~ 93 (132)
++||+.+.
T Consensus 93 tI~lv~~~ 100 (101)
T 3m63_B 93 SVHLVKSQ 100 (101)
T ss_dssp EEEECCCC
T ss_pred EEEEEeCC
Confidence 89998764
No 61
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.41 E-value=4.1e-17 Score=106.39 Aligned_cols=74 Identities=26% Similarity=0.421 Sum_probs=64.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| +++
T Consensus 2 ~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g------~~i 67 (76)
T 3b1l_X 2 IVFVRFNSSYGF-PVEVDSDTSILQLKEVVAKQ-----QGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQ------SIV 67 (76)
Confidence 467778888544 68999999999999999987 2445 999999999999999999999999998 789
Q ss_pred EEEecCCC
Q 032861 88 HVVVQPSL 95 (132)
Q Consensus 88 Hlv~r~~~ 95 (132)
|+++++.+
T Consensus 68 ~l~~rlrg 75 (76)
T 3b1l_X 68 HIVQRPRR 75 (76)
Confidence 99998764
No 62
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.61 E-value=5e-17 Score=121.99 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=0.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
+|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|+.|+|+.||++|+|.+| +++
T Consensus 2 qI~VK~l~G~~~-~l~V~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g------stL 67 (152)
T 3u5c_f 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEEccccCcHHHcCCCCC------CEE
Confidence 577888889554 78999999999999999987 3455 999999999999999999999999998 789
Q ss_pred EEEecCCCccccc
Q 032861 88 HVVVQPSLAKTKT 100 (132)
Q Consensus 88 Hlv~r~~~~~~~~ 100 (132)
||++++.++++++
T Consensus 68 ~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 68 HLVLRLRGGGKKR 80 (152)
T ss_dssp -------------
T ss_pred EEEeeccCCCcCc
Confidence 9999999997664
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.61 E-value=2.1e-15 Score=110.92 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=75.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE-e-cCeecCCCCcccccCCCCCCCCCce
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-S-SGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI-y-~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
+.|.+++.+|..+ ++++++++||++||++|++. +++| +++|||+ | +|+.|+|+.+|++|+|.+|
T Consensus 3 m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~-----~gip--~~~QrL~~~~~g~~L~d~~tL~~y~i~~~------ 68 (159)
T 3rt3_B 3 WDLTVKMLAGNEF-QVSLSSSMSVSELKAQITQK-----IGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPG------ 68 (159)
T ss_dssp CEEEEEETTSCEE-EEECCTTCCHHHHHHHHHHH-----HCCC--GGGEEEEEETTCCBCCTTSCGGGGTCCTT------
T ss_pred eEEEEEECCCCEE-EEEeCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEEcCCCCCCCCCCCHHHcCCCCC------
Confidence 5788999999654 78999999999999999998 2344 9999999 9 8999999999999999998
Q ss_pred EEEEEEecC-CCccccccc----eeeEEEEeeecCCC
Q 032861 85 IIMHVVVQP-SLAKTKTVH----FGVMLELDWTNTNP 116 (132)
Q Consensus 85 ~tmHlv~r~-~~~~~~~~k----~~~~~~~~~~~~~~ 116 (132)
+++|++++. +++..-..| +.+-++++-++|..
T Consensus 69 ~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~ 105 (159)
T 3rt3_B 69 STVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVA 105 (159)
T ss_dssp CEEEEEECCCCCCEEEEEECTTSCEEEEEECTTSBHH
T ss_pred CEEEEEccCCCCcEEEEEECCCCCEEEEEeCCCCCHH
Confidence 789999994 544333222 34445555555543
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.60 E-value=2.5e-15 Score=116.41 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=71.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~ 85 (132)
.++|.+++.+|..+ .+++++++||.+||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.++ +
T Consensus 105 eMqI~VKtl~Gkt~-~l~V~~s~TV~~LK~kI~~~-----~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~g------s 170 (189)
T 3q3f_A 105 GGQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 170 (189)
T ss_dssp CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTCBGGGGTCCTT------C
T ss_pred ceeeeeecCCCCEE-EEEeCCCCcHHHHHHHHHhc-----cCCC--HHHEEEEECCEECCCCCCHHHCCCCCC------C
Confidence 47889999999655 78999999999999999988 3444 999999999999999999999999998 7
Q ss_pred EEEEEecCCCccccc
Q 032861 86 IMHVVVQPSLAKTKT 100 (132)
Q Consensus 86 tmHlv~r~~~~~~~~ 100 (132)
++||+++..++++--
T Consensus 171 tI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 171 TLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEECCCCCCCCCCC
T ss_pred EEEEEEEcCCCCcce
Confidence 899999999886553
No 65
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=5.6e-15 Score=100.33 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=65.2
Q ss_pred CcceEEEEEEeCCCCeeeeEEeCCc-----chHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCC-CCcccccCCC
Q 032861 3 DEELIDIKFRLYDGSDIGPFRYSSA-----STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN-NKTVGQCKIP 76 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~~~~v~~s-----~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD-~~tLs~~~I~ 76 (132)
.++.+.|+++.. |.. +.++++++ +||.+||++|++. +++| +++|||+|.|+.|+| +.+|++|+|.
T Consensus 4 ~~~~~~v~Vk~~-~~~-~~i~v~~~~~~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~ 74 (92)
T 1wxv_A 4 GSSGLTVTVTHS-NEK-HDLHVTSQQGSSEPVVQDLAQVVEEV-----IGVP--QSFQKLIFKGKSLKEMETPLSALGIQ 74 (92)
T ss_dssp CCSSEEEEEECS-SSE-EEEEECCCSSSSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEEECCSSSBHHHHTCC
T ss_pred CCCeEEEEEEEC-CEE-EEEEECCCcCcccCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeecCCCcccHHHCCCC
Confidence 356688888884 534 47899995 9999999999988 2455 999999999999988 6689999999
Q ss_pred CCCCCCceEEEEEEecCCCc
Q 032861 77 YGEVPGGVIIMHVVVQPSLA 96 (132)
Q Consensus 77 ~gd~~~~~~tmHlv~r~~~~ 96 (132)
+| .++||+.++..+
T Consensus 75 ~g------~~i~l~~~~~~~ 88 (92)
T 1wxv_A 75 DG------CRVMLIGKKNSG 88 (92)
T ss_dssp SS------EEEEEESCCSCS
T ss_pred CC------CEEEEEecCCCC
Confidence 88 789998876554
No 66
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.59 E-value=4.6e-15 Score=101.49 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=60.4
Q ss_pred EEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEe-------cCeecCCCCcccccCCCCC
Q 032861 7 IDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-------SGKILENNKTVGQCKIPYG 78 (132)
Q Consensus 7 v~l~~rl~-~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy-------~Gk~LeD~~tLs~~~I~~g 78 (132)
|.|.+... .+.......|++++||++||++|+.. +++| +++||||| +|++|+|+++|++|+|.+|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-----~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g 75 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-----FATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDE 75 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-----SCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTT
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-----HCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCC
Confidence 34444432 23345568999999999999999977 5666 99999996 6999999999999999999
Q ss_pred CCCCceEEEEEEecCC
Q 032861 79 EVPGGVIIMHVVVQPS 94 (132)
Q Consensus 79 d~~~~~~tmHlv~r~~ 94 (132)
.++||+-..+
T Consensus 76 ------~~ihlvd~~P 85 (86)
T 4b6w_A 76 ------FVIHVVDLQP 85 (86)
T ss_dssp ------CEEEEEECCC
T ss_pred ------CEEEEEeCCC
Confidence 7999986543
No 67
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.58 E-value=1.1e-14 Score=105.03 Aligned_cols=76 Identities=21% Similarity=0.342 Sum_probs=66.2
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
+.|.++..+|.. +.+++++++||.+||++|++. +++| +++|||+|.|+.|+|+.||++|+|.+| ++
T Consensus 77 ~~i~Vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~-----~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~------~~ 142 (152)
T 3b08_A 77 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 142 (152)
T ss_dssp EEEEEEESSSCE-EEEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred cceeeeecCCCE-EEEEeCCCCcHHHHHHHHHHH-----hCcC--hhhEEEEECCEECCCCCCHHHcCCCCC------CE
Confidence 567788888854 478999999999999999988 2344 999999999999999999999999998 68
Q ss_pred EEEEecCCCc
Q 032861 87 MHVVVQPSLA 96 (132)
Q Consensus 87 mHlv~r~~~~ 96 (132)
+|+++++.|+
T Consensus 143 i~l~~r~~GG 152 (152)
T 3b08_A 143 LHLVLRLRGG 152 (152)
T ss_dssp EEEEECCCC-
T ss_pred EEEEEecCCC
Confidence 9999998775
No 68
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=1.1e-14 Score=98.46 Aligned_cols=69 Identities=26% Similarity=0.275 Sum_probs=58.4
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 032861 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (132)
Q Consensus 11 ~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv 90 (132)
++..+| ..+.+++++++||++||++|++. +++| +++|||+|+|+.|+|+.+|++|+|.+| .++||+
T Consensus 16 ~~~~~g-~~~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~l~l~ 81 (85)
T 2kd0_A 16 TVKFGG-KSIPLSVSPDCTVKDLKSQLQPI-----TNVL--PRGQKLIFKGKVLVETSTLKQSDVGSG------AKLMLM 81 (85)
T ss_dssp EEEETT-EEEEEEECTTSBHHHHHHHHHHH-----HCCC--TTTCEEEETTEECCTTCBTTTTTCCTT------EEEEEE
T ss_pred EEEECC-EEEEEEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCeECCCcCCHHHCCCCCC------CEEEEE
Confidence 334566 44578999999999999999988 2344 999999999999999999999999998 789987
Q ss_pred ecC
Q 032861 91 VQP 93 (132)
Q Consensus 91 ~r~ 93 (132)
..+
T Consensus 82 ~s~ 84 (85)
T 2kd0_A 82 ASQ 84 (85)
T ss_dssp CCC
T ss_pred EeC
Confidence 654
No 69
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.57 E-value=8.1e-15 Score=99.93 Aligned_cols=77 Identities=23% Similarity=0.158 Sum_probs=65.5
Q ss_pred CcceEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE---ecCeecCCCCcccccCCCCC
Q 032861 3 DEELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYG 78 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~~~-~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI---y~Gk~LeD~~tLs~~~I~~g 78 (132)
+++.+.|+++. .| ..+.+ ++++++||.+||++|++. +++| +++|||+ |.|++|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~Vk~-~g-~~~~i~~v~~~~TV~~lK~~I~~~-----~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g 74 (90)
T 1v5t_A 4 GSSGLPIIVKW-GG-QEYSVTTLSEDDTVLDLKQFLKTL-----TGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPN 74 (90)
T ss_dssp CCCSCCEEEEE-TT-EEEEECSCCSSSBHHHHHHHHHHH-----TCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTT
T ss_pred CCceEEEEEEE-CC-EEEEEEEeCCCCCHHHHHHHHHHH-----HCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCC
Confidence 35667888886 56 44578 999999999999999998 3455 9999999 99999999999999999998
Q ss_pred CCCCceEEEEEEecCC
Q 032861 79 EVPGGVIIMHVVVQPS 94 (132)
Q Consensus 79 d~~~~~~tmHlv~r~~ 94 (132)
.++||+..+.
T Consensus 75 ------~~l~l~~~~~ 84 (90)
T 1v5t_A 75 ------TKIMMMGTRE 84 (90)
T ss_dssp ------EEEEEECCCS
T ss_pred ------CEEEEEecCc
Confidence 7899987654
No 70
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=5.7e-15 Score=102.28 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=65.3
Q ss_pred CcceEEEEEEeCCCCeee-eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 032861 3 DEELIDIKFRLYDGSDIG-PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~-~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~ 81 (132)
+++.+.|+++. .| ..+ .+++++++||.+||++|++. +++| +++|||||.|++|+|+ +|++|+|.+|
T Consensus 4 ~~~~m~i~Vk~-~g-~~~~~l~v~~~~TV~~lK~~I~~~-----tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g--- 70 (96)
T 1wgg_A 4 GSSGYSVTVKW-GK-EKFEGVELNTDEPPMVFKAQLFAL-----TGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNG--- 70 (96)
T ss_dssp CCCEEEEEEEE-TT-EEEEEEEEESSSCHHHHHHHHHHH-----TCCC--TTTSCCEETTEECCSS-CCCSCCCCSS---
T ss_pred CCcEEEEEEEE-CC-EEEEEEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCcCCCCC-CHHHCCCCCC---
Confidence 36778999986 56 455 58999999999999999998 3455 9999999999999999 9999999998
Q ss_pred CceEEEEEEecCC
Q 032861 82 GGVIIMHVVVQPS 94 (132)
Q Consensus 82 ~~~~tmHlv~r~~ 94 (132)
.++||+..+.
T Consensus 71 ---~~i~l~~~~~ 80 (96)
T 1wgg_A 71 ---MTVLMMGSAD 80 (96)
T ss_dssp ---CEEECCCCCC
T ss_pred ---CEEEEEecch
Confidence 6899887765
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.57 E-value=7.9e-15 Score=105.71 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=67.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
.|+++..+|..+ .+++++++||++||++|++. .++| +++|||+|.|+.|+|+.+|++|+|.+| .++
T Consensus 2 ~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~-----~gip--~~~q~L~~~g~~L~d~~tL~~~~i~~~------~~l 67 (152)
T 3b08_A 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (152)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CEE
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCeECcCcccHHHhccCCC------Cee
Confidence 578888899554 78999999999999999988 2344 999999999999999999999999998 689
Q ss_pred EEEecCCCcccc
Q 032861 88 HVVVQPSLAKTK 99 (132)
Q Consensus 88 Hlv~r~~~~~~~ 99 (132)
|++.+..++..-
T Consensus 68 ~l~~~~~~~~~i 79 (152)
T 3b08_A 68 HLVLRLRGGMQI 79 (152)
T ss_dssp EEEECCTTCEEE
T ss_pred EEEeecccccce
Confidence 999987765433
No 72
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=109.65 Aligned_cols=76 Identities=21% Similarity=0.342 Sum_probs=62.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
+.|.++..+|.. ..+++++++||.+||++|++. +++| +++|||+|.|+.|+|+.+|++|+|.+| ++
T Consensus 97 ~~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g------~t 162 (172)
T 3u30_A 97 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 162 (172)
T ss_dssp EEEEEEESSCCE-EEEEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBSGGGTCCTT------CE
T ss_pred ccceeecccCcc-eeEEecCCCCHHHHHHHHHHH-----hCCC--ceeEEEEECCccCCCCCcHHHhCCCCC------CE
Confidence 456677788854 478999999999999999988 3455 999999999999999999999999998 78
Q ss_pred EEEEecCCCc
Q 032861 87 MHVVVQPSLA 96 (132)
Q Consensus 87 mHlv~r~~~~ 96 (132)
+||+++..++
T Consensus 163 l~l~~rlrgG 172 (172)
T 3u30_A 163 LHLVLRLRGG 172 (172)
T ss_dssp EEECC-----
T ss_pred EEEEEecCCC
Confidence 9999997764
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.55 E-value=3e-14 Score=101.55 Aligned_cols=77 Identities=10% Similarity=-0.007 Sum_probs=63.0
Q ss_pred ceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCC-CCCCCCC
Q 032861 5 ELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPG 82 (132)
Q Consensus 5 ~~v~l~~rl~~G~-~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I-~~gd~~~ 82 (132)
-.+.+.|+...++ ...+++++|++||++||++|+++ +++| +++|||||+|++|+|++||++||| .+|
T Consensus 23 i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k-----~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G---- 91 (105)
T 4dbg_A 23 IRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLD-----YGFP--PVLQQWVIGQRLARDQETLHSHGVRQNG---- 91 (105)
T ss_dssp EEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEEECTTCBTGGGTCCSTT----
T ss_pred EEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHH-----hCCC--HHHEEEeccCeEccCcCcHHHcCCCCCC----
Confidence 3466666666652 34578999999999999999988 3455 999999999999999999999999 477
Q ss_pred ceEEEEEEecCC
Q 032861 83 GVIIMHVVVQPS 94 (132)
Q Consensus 83 ~~~tmHlv~r~~ 94 (132)
.++||++-..
T Consensus 92 --~t~hL~l~~~ 101 (105)
T 4dbg_A 92 --DSAYLYLLSA 101 (105)
T ss_dssp --CEEEEEECCC
T ss_pred --CEEEEEEEec
Confidence 6899987643
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.55 E-value=3.5e-16 Score=113.04 Aligned_cols=76 Identities=25% Similarity=0.378 Sum_probs=0.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
+|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|.|+.|+|+.||++|+|.+| +++
T Consensus 2 ~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~g------sti 67 (128)
T 3u5e_m 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----hCcC--hHHEEEEECCEECCCCCchhhhccCCC------CEE
Confidence 567888888554 78999999999999999987 3455 999999999999999999999999998 789
Q ss_pred EEEecCCCcc
Q 032861 88 HVVVQPSLAK 97 (132)
Q Consensus 88 Hlv~r~~~~~ 97 (132)
||+++..++.
T Consensus 68 ~l~~rl~GG~ 77 (128)
T 3u5e_m 68 HLVLRLRGGI 77 (128)
T ss_dssp ---------C
T ss_pred EEEEEcCCCC
Confidence 9999988875
No 75
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=1.4e-14 Score=99.94 Aligned_cols=75 Identities=29% Similarity=0.302 Sum_probs=62.9
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
++.+.|+++. .| ..+.+++++++||.+||++|++. +++| +++|||+|.|++|+ +.+|++|+|.++
T Consensus 15 ~~~~~i~Vk~-~g-~~~~i~v~~~~TV~~LK~~I~~~-----tgip--~~~QrL~~~Gk~Ld-d~tL~~~~i~~g----- 79 (95)
T 1v86_A 15 KELVDLKIIW-NK-TKHDVKVPLDSTGSELKQKIHSI-----TGLP--PAMQKVMYKGLVPE-DKTLREIKVTSG----- 79 (95)
T ss_dssp CCCEEEEEEE-TT-EEEEEEECTTSBHHHHHHHHHHH-----HCSC--STTCCCBSSSBCCS-SSBHHHHCCCTT-----
T ss_pred CceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCeeCC-cCcHHHCCCCCC-----
Confidence 5668888885 46 45579999999999999999998 3445 99999999999995 459999999988
Q ss_pred eEEEEEEecCC
Q 032861 84 VIIMHVVVQPS 94 (132)
Q Consensus 84 ~~tmHlv~r~~ 94 (132)
.+|||+..+.
T Consensus 80 -~~i~lv~~~~ 89 (95)
T 1v86_A 80 -AKIMVVGSTI 89 (95)
T ss_dssp -EEEEECCSSC
T ss_pred -CEEEEEeccc
Confidence 7899987654
No 76
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.52 E-value=4.9e-14 Score=98.01 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=62.3
Q ss_pred cceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEec--Ce---ec-CCCCcccccCCC
Q 032861 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--GK---IL-ENNKTVGQCKIP 76 (132)
Q Consensus 4 ~~~v~l~~rl~~G~-~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~--Gk---~L-eD~~tLs~~~I~ 76 (132)
+..|.|.|+...+. ....+++++++||++||++|++. +++| +++|||+|. |+ .| +|+++|++|+|.
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-----~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-----TGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANS 85 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-----HCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCS
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-----HCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcC
Confidence 56788888887663 24578999999999999999988 4566 999999998 45 44 999999999999
Q ss_pred CCCCCCceEEEEEE
Q 032861 77 YGEVPGGVIIMHVV 90 (132)
Q Consensus 77 ~gd~~~~~~tmHlv 90 (132)
+| +++||+
T Consensus 86 ~g------stihlv 93 (95)
T 2kjr_A 86 DG------LRLHVV 93 (95)
T ss_dssp SS------CEEEEE
T ss_pred CC------CEEEEE
Confidence 99 789986
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.9e-14 Score=96.08 Aligned_cols=73 Identities=8% Similarity=0.046 Sum_probs=61.4
Q ss_pred ceEEEEEEeCCCCee-eeE-EeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEec--CeecCCCCcccccCCCCCCC
Q 032861 5 ELIDIKFRLYDGSDI-GPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--GKILENNKTVGQCKIPYGEV 80 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i-~~~-~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~--Gk~LeD~~tLs~~~I~~gd~ 80 (132)
..+.|.++...|..+ +.+ +++|++||++||++|++.. +++| +++|||+|. |++|+|+.||++|+|.+|
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~----~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~-- 80 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTH----PQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTT-- 80 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHC----SSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSE--
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHh----cCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCC--
Confidence 347899999988664 457 9999999999999999842 2344 999999977 999999999999999988
Q ss_pred CCceEEEEE
Q 032861 81 PGGVIIMHV 89 (132)
Q Consensus 81 ~~~~~tmHl 89 (132)
+++|+
T Consensus 81 ----stl~~ 85 (88)
T 2dzj_A 81 ----ATLYF 85 (88)
T ss_dssp ----EEEEE
T ss_pred ----CEEEE
Confidence 67775
No 78
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.50 E-value=4.4e-14 Score=118.81 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=69.5
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
...+.|+||+.+|+. +.++|++++||.+||++|++++. ++++| +++|||||+||+|+|+.+|++|+|.+|+
T Consensus 5 ~~~M~I~VKtl~Gk~-~~leV~~~~TV~~LK~~I~~~~~--~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs---- 75 (368)
T 1oqy_A 5 SSAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN---- 75 (368)
T ss_dssp -CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTC--SSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS----
T ss_pred CceEEEEEEeCCCCE-EEEEeCCCChHHHHHHHHHHHhC--cCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC----
Confidence 345788999999955 47899999999999999999642 34566 9999999999999999999999999983
Q ss_pred eEEEEEEecCCCcc
Q 032861 84 VIIMHVVVQPSLAK 97 (132)
Q Consensus 84 ~~tmHlv~r~~~~~ 97 (132)
..+||+.++.++.
T Consensus 76 -tIv~lv~k~~~~~ 88 (368)
T 1oqy_A 76 -FVVVMVTKTKAGQ 88 (368)
T ss_dssp -CEEEEEECCCSSS
T ss_pred -EEEEEEecCCCCC
Confidence 3458888876654
No 79
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.48 E-value=9.4e-14 Score=97.11 Aligned_cols=76 Identities=12% Similarity=0.175 Sum_probs=62.7
Q ss_pred cceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCe---e----cCCCCcccccCC
Q 032861 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK---I----LENNKTVGQCKI 75 (132)
Q Consensus 4 ~~~v~l~~rl~~G~-~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk---~----LeD~~tLs~~~I 75 (132)
+..|.|.|...... ....++|++++||++||++|++. +++| +++|||+|.|+ . ++|+++|++|+|
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-----~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I 84 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-----CGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSP 84 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-----HCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCC
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-----HCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCC
Confidence 56788888875553 23578999999999999999987 4566 99999999984 3 599999999999
Q ss_pred CCCCCCCceEEEEEEec
Q 032861 76 PYGEVPGGVIIMHVVVQ 92 (132)
Q Consensus 76 ~~gd~~~~~~tmHlv~r 92 (132)
.+| .++||+-.
T Consensus 85 ~~g------~~Ihlvd~ 95 (97)
T 2kj6_A 85 FDG------FRLHIIDL 95 (97)
T ss_dssp CSC------CEEEEEEC
T ss_pred CCC------CEEEEEeC
Confidence 999 78998753
No 80
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.46 E-value=5.4e-15 Score=114.91 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=2.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
+|.|++.+|.. .+++|++++||.+||++|++. +++| +++|||||+|++|+|+.||+ ++ +|+
T Consensus 2 qI~VKtL~Gkt-itLeV~~sdTV~~LK~kI~~k-----eGIP--~~qQRLIf~GK~LeD~~TLs-----~~------STL 62 (189)
T 2xzm_9 2 QVQVKTLEGET-KIYTLEQGTSVLDLKSQISQD-----MGFE--IDMMTLVNNGFIAPNTELVT-----DD------VTY 62 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCCE-EEEEECCcChHHHHHHHHHHH-----hCcC--hhHEEEEecCeECCCCCccc-----CC------CEE
Confidence 57788889954 479999999999999999987 4566 99999999999999999998 45 789
Q ss_pred EEEecCCCccccc
Q 032861 88 HVVVQPSLAKTKT 100 (132)
Q Consensus 88 Hlv~r~~~~~~~~ 100 (132)
||++++.++..++
T Consensus 63 hLvlRLrGG~~kr 75 (189)
T 2xzm_9 63 YLSLKLLGGKKKK 75 (189)
T ss_dssp ---------CCCC
T ss_pred EEEEecCCCcccc
Confidence 9999999887653
No 81
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=3e-13 Score=92.88 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=62.8
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC---ee----cCCCCcccccCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIP 76 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G---k~----LeD~~tLs~~~I~ 76 (132)
+..|.|.|+...+.....+++++++||++||++|++. +++| +++|||+|.| +. ++|+.+|++|+|.
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-----~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-----VGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-----TCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-----HCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence 6668888887655313568999999999999999988 4566 9999999997 43 5899999999999
Q ss_pred CCCCCCceEEEEEEec
Q 032861 77 YGEVPGGVIIMHVVVQ 92 (132)
Q Consensus 77 ~gd~~~~~~tmHlv~r 92 (132)
+| .++||+-.
T Consensus 78 ~g------~~l~v~d~ 87 (95)
T 1v6e_A 78 DG------CRIHVIDH 87 (95)
T ss_dssp TT------CEEEEBCC
T ss_pred CC------CEEEEEEC
Confidence 98 68998653
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.43 E-value=3.9e-13 Score=110.91 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=65.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
..++|.++..+|..+ .+++++++||++||++|++. +++| +++|||+|+|++|+|+.+|++|+|.++
T Consensus 232 ~~MqI~VKtl~Gk~~-~leV~~s~TV~dLK~kI~~~-----~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~g------ 297 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 297 (307)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTGGGTCCTT------
T ss_pred CeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEeCCeecCCCCCHHHcCCCCC------
Confidence 457889999999654 78999999999999999988 3344 999999999999999999999999988
Q ss_pred EEEEEEecC
Q 032861 85 IIMHVVVQP 93 (132)
Q Consensus 85 ~tmHlv~r~ 93 (132)
+++||++|.
T Consensus 298 stL~LvlRL 306 (307)
T 3ai5_A 298 STLHLVLRL 306 (307)
T ss_dssp CEEEEEC--
T ss_pred CEEEEEEeC
Confidence 689999875
No 83
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=94.94 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=61.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEe--cCeecCCCCcccccCCCCCCCCCce
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy--~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
+.+++++ .|.. +++++++++||++||++|++. +++| +++|||+| .|+ |+|+.+|++|+|+.|
T Consensus 10 ~~~~vk~-~Gk~-~~v~v~~~~TV~~LK~~I~~~-----tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~g------ 73 (100)
T 2dzm_A 10 LDFRVEY-RDRN-VDVVLEDTCTVGEIKQILENE-----LQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKN------ 73 (100)
T ss_dssp EEEEEEC-SSCE-EEEEEETTSBHHHHHHHHHHH-----HCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSE------
T ss_pred EEEEEEe-CCeE-EEEEECCCCcHHHHHHHHHHH-----HCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCC------
Confidence 3444444 5544 478999999999999999988 4566 89999997 676 999999999999988
Q ss_pred EEEEEEecCCCccc
Q 032861 85 IIMHVVVQPSLAKT 98 (132)
Q Consensus 85 ~tmHlv~r~~~~~~ 98 (132)
.+|||++....+.-
T Consensus 74 stL~lvl~~~~~~~ 87 (100)
T 2dzm_A 74 NSLYVLTPDLPPPS 87 (100)
T ss_dssp EEEEECCSSSCCCC
T ss_pred CEEEEEecCCCCCc
Confidence 89999998776543
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.36 E-value=1.3e-12 Score=91.87 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=65.0
Q ss_pred CcceEEEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCe-----------e----cCC
Q 032861 3 DEELIDIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-----------I----LEN 66 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~~~~v~-~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk-----------~----LeD 66 (132)
+.+.+.|+||..+|.. .++++ +++||.+||++|++.. ++| +++|||+|.|+ . ++|
T Consensus 4 ~~~~M~irvrs~~G~~--~v~v~~~~~Tv~~LK~kI~~~~-----gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d 74 (107)
T 1wf9_A 4 GSSGTMLRVRSRDGLE--RVSVDGPHITVSQLKTLIQDQL-----QIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADP 74 (107)
T ss_dssp SCCCEEEEEECSSCEE--EEEECCTTSBHHHHHHHHHHHS-----CCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCT
T ss_pred CCCeEEEEEECCCCCE--EEEECCCCCcHHHHHHHHHHHh-----CcC--cccCEEEECCccccccCccccccccccCCC
Confidence 3556789999999943 47999 9999999999999883 344 99999999998 4 689
Q ss_pred CCcccccCCCCCCCCCceEEEEEEecCC
Q 032861 67 NKTVGQCKIPYGEVPGGVIIMHVVVQPS 94 (132)
Q Consensus 67 ~~tLs~~~I~~gd~~~~~~tmHlv~r~~ 94 (132)
+.+|++|+|.+| .++||+....
T Consensus 75 ~~tL~~~gi~~G------~~L~l~~~~~ 96 (107)
T 1wf9_A 75 NLRISSLNLAHG------SMVYLAYEGE 96 (107)
T ss_dssp TCBGGGTCCCTT------CEEECCCSSC
T ss_pred CCCHHHCCCCCC------CEEEEEeCCC
Confidence 999999999999 6899877643
No 85
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.36 E-value=6e-12 Score=90.39 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=60.6
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC---ee----cCCCCcccccCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIPYG 78 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G---k~----LeD~~tLs~~~I~~g 78 (132)
.|.|.|+...+.....+++++++||++||++|++. +++| +++|||+|.| +. ++|+.+|++|+|.+|
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-----~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g 78 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-----VGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDG 78 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-----HCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSS
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-----hCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCC
Confidence 46777766554213568999999999999999988 4555 9999999988 42 589999999999998
Q ss_pred CCCCceEEEEEEecC
Q 032861 79 EVPGGVIIMHVVVQP 93 (132)
Q Consensus 79 d~~~~~~tmHlv~r~ 93 (132)
+++||+...
T Consensus 79 ------~~ihvvd~~ 87 (122)
T 1t0y_A 79 ------YRIHAVDVT 87 (122)
T ss_dssp ------EEEEEEECT
T ss_pred ------CEEEEEeCC
Confidence 899998643
No 86
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=5e-12 Score=87.65 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=70.4
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.+.|+++..+|..+ .+.+.++++++.|++.++++ +++| ++++||+|.|+.|++++|+++|++.+|
T Consensus 5 ~~~i~ikVk~~~g~~i-~~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medg----- 71 (94)
T 2io1_B 5 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDE----- 71 (94)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTT-----
T ss_pred CCeEEEEEECCCCCEE-EEEECCCCHHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCC-----
Confidence 5779999999999766 68999999999999999988 2344 899999999999999999999999999
Q ss_pred eEEEEEEecCCCcc
Q 032861 84 VIIMHVVVQPSLAK 97 (132)
Q Consensus 84 ~~tmHlv~r~~~~~ 97 (132)
.+||++++..++.
T Consensus 72 -D~Idv~~~~~GG~ 84 (94)
T 2io1_B 72 -DTIDVFQQQTGGV 84 (94)
T ss_dssp -CEEEEEECCEESC
T ss_pred -CEEEEEEeccCCC
Confidence 5799999987774
No 87
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.30 E-value=4.3e-12 Score=104.65 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=63.2
Q ss_pred CcceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE---ecCeecCCCCcccccCCCCCC
Q 032861 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 3 ~~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI---y~Gk~LeD~~tLs~~~I~~gd 79 (132)
+++.+.|+++. +| +.+++++++++||++||++|++. +++| +++|||| |+|++|+|+.+|++|+|++|
T Consensus 2 ~~~~i~i~Vk~-~g-~~~~v~v~~~~Tv~~lK~~I~~~-----tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g- 71 (320)
T 3shq_A 2 EVKEVVVIVKW-SG-KEYPVDLTDQDTVEVLRHEIFRK-----TQVR--PERQKLLNLKYKGKTAADNVKISALELKPN- 71 (320)
T ss_dssp --CEEEEEEEE-TT-EEEEEEEETTSBHHHHHHHHHHH-----HCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC---
T ss_pred CCceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEeecccCCcccCccccHHHcCCCCC-
Confidence 45678888886 56 44579999999999999999988 3455 9999999 89999999999999999998
Q ss_pred CCCceEEEEEEecCCC
Q 032861 80 VPGGVIIMHVVVQPSL 95 (132)
Q Consensus 80 ~~~~~~tmHlv~r~~~ 95 (132)
+++||+-.+..
T Consensus 72 -----~~l~L~gs~~~ 82 (320)
T 3shq_A 72 -----FKLMMVGSTEA 82 (320)
T ss_dssp -----CEEEEECCCC-
T ss_pred -----CEEEEEccchh
Confidence 78998766544
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=4.3e-11 Score=82.62 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=70.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
+.|.|+++..+|..+ .+.+.++++++.|++.++++ .++| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 4 ~~i~ikVk~~~g~~v-~~~vk~~t~l~kl~~~y~~~-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medg------ 69 (91)
T 2io0_B 4 DHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDE------ 69 (91)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHH-----TTCC--STTEEEEETTEECCTTCCTTTTTCCTT------
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCC------
Confidence 568999999999766 68999999999999999988 2344 899999999999999999999999999
Q ss_pred EEEEEEecCCCcc
Q 032861 85 IIMHVVVQPSLAK 97 (132)
Q Consensus 85 ~tmHlv~r~~~~~ 97 (132)
.+||++++..++.
T Consensus 70 D~Idv~~~q~gg~ 82 (91)
T 2io0_B 70 DTIDVFQQQTGGV 82 (91)
T ss_dssp EEEEEEECCCCCC
T ss_pred CEEEEEEeccCCc
Confidence 6899999887764
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.22 E-value=9.8e-11 Score=80.77 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=66.9
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.|.|+++..+|..+ .+.+.+++++..|++.++++ .++| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 15 ~~~i~ikV~~~~g~~i-~~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medg----- 81 (93)
T 2d07_B 15 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDE----- 81 (93)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTT-----
T ss_pred CCeEEEEEECCCCCEE-EEEEccCCHHHHHHHHHHHH-----hCCC--ccceEEEECCEEcCCCCCHHHcCCCCC-----
Confidence 3578899998899766 68999999999999999988 2333 899999999999999999999999999
Q ss_pred eEEEEEEecCCCc
Q 032861 84 VIIMHVVVQPSLA 96 (132)
Q Consensus 84 ~~tmHlv~r~~~~ 96 (132)
.+||++++..++
T Consensus 82 -D~Idv~~~q~GG 93 (93)
T 2d07_B 82 -DTIDVFQQQTGG 93 (93)
T ss_dssp -EEEEEEECC---
T ss_pred -CEEEEEeeccCC
Confidence 689999887654
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.18 E-value=2.2e-11 Score=82.05 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=58.6
Q ss_pred EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC--eecC---CCCcccccCCCCCCCC
Q 032861 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE---NNKTVGQCKIPYGEVP 81 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~-v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G--k~Le---D~~tLs~~~I~~gd~~ 81 (132)
.|++|+.+|..+ ++ +++++||.+||++|+++. ++| +++|||+|++ |.|+ |+.+|++|||..|
T Consensus 2 ~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~~-----gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g--- 69 (86)
T 2kzr_A 2 RVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAIT-----GIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSG--- 69 (86)
T ss_dssp CEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHHT-----CCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTT---
T ss_pred EEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHHh-----CCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCC---
Confidence 588999999543 56 999999999999999882 344 8999999974 8884 7899999999988
Q ss_pred CceEEEEEEecC
Q 032861 82 GGVIIMHVVVQP 93 (132)
Q Consensus 82 ~~~~tmHlv~r~ 93 (132)
.++|+.-..
T Consensus 70 ---~~l~v~~~~ 78 (86)
T 2kzr_A 70 ---DMLIVEEDQ 78 (86)
T ss_dssp ---CEEECCCCS
T ss_pred ---CEEEEEeCC
Confidence 678876553
No 91
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=1.1e-10 Score=82.42 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=70.3
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.|.|+++..+|..+ .+.|.+++++..|++.++++ .++| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 22 ~~~I~IkVk~~~g~~i-~~kVk~~t~l~kL~~~y~ek-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medg----- 88 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDE----- 88 (104)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSCHHHHHHHHHHH-----HTCC--TTTSCEESSSSBCCTTSCTTTTTCCTT-----
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCC-----
Confidence 3579999999999766 68999999999999999988 2333 889999999999999999999999999
Q ss_pred eEEEEEEecCCCccc
Q 032861 84 VIIMHVVVQPSLAKT 98 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~ 98 (132)
.+||++++..++..
T Consensus 89 -D~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 89 -DTIDVFQQQTSGPS 102 (104)
T ss_dssp -EEEEECCCCCCCSS
T ss_pred -CEEEEEEeccCCCC
Confidence 68999998877643
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.15 E-value=2.4e-10 Score=74.92 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~t 86 (132)
+.|+++..+|..+ .+.+.++++++.|++..+++ .++| ++++||+|.|+.|.+++|+++|++.+| .+
T Consensus 2 i~lkV~~~~g~~v-~~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medg------D~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDE------DT 67 (72)
T ss_dssp EEEEEECTTSCEE-EEEECTTSCTHHHHHHHHHH-----HTCC--TTTCEEEETTEECCTTCCTTTTTCCTT------EE
T ss_pred EEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCC------CE
Confidence 6788888899766 68999999999999999987 2344 899999999999999999999999999 57
Q ss_pred EEEE
Q 032861 87 MHVV 90 (132)
Q Consensus 87 mHlv 90 (132)
+|+.
T Consensus 68 Idv~ 71 (72)
T 1wm3_A 68 IDVF 71 (72)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 93
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.12 E-value=2e-10 Score=82.09 Aligned_cols=78 Identities=15% Similarity=0.270 Sum_probs=69.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
+.|.|+++..+|..+ .+.+.+++++..|++.++++ .++| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 25 ~~I~IkVk~~~g~~i-~fkVk~~t~l~kL~~ay~ek-----~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDg------ 90 (110)
T 2k8h_A 25 ALVAVKVVNADGAEM-FFRIKSRTALKKLIDTYCKK-----QGIS--RNSVRFLFDGTPIDETKTPEELGMEDD------ 90 (110)
T ss_dssp CCEEEEEEETTSCCE-EEEECTTSSHHHHHHHHHHH-----HTCC--SSSCEEESSSCBCCSSSHHHHHHCSSE------
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCC------
Confidence 569999999999766 69999999999999999988 2333 889999999999999999999999999
Q ss_pred EEEEEEecCCCc
Q 032861 85 IIMHVVVQPSLA 96 (132)
Q Consensus 85 ~tmHlv~r~~~~ 96 (132)
.+||+++...++
T Consensus 91 D~Idv~~~q~Gg 102 (110)
T 2k8h_A 91 DVIDAMVEQTGG 102 (110)
T ss_dssp EEEEEECCCCCC
T ss_pred CEEEEEEcccCc
Confidence 689999887765
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.11 E-value=5e-10 Score=79.59 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=65.7
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.|.|+++. +|..+ .+.+.+++++..|++.++++ +++| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 29 ~~~I~IkV~~-~g~~i-~fkIk~tt~l~kL~~ay~ek-----~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medg----- 94 (106)
T 2eke_C 29 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQTPEDLDMEDN----- 94 (106)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTT-----
T ss_pred CCeEEEEEec-CCcEE-EEEeCCCCHHHHHHHHHHHH-----hCCC--cccEEEEECCeEcCCCCCHHHcCCCCC-----
Confidence 3568999998 89665 68999999999999999987 2333 899999999999999999999999999
Q ss_pred eEEEEEEecCCCc
Q 032861 84 VIIMHVVVQPSLA 96 (132)
Q Consensus 84 ~~tmHlv~r~~~~ 96 (132)
.+||++++..++
T Consensus 95 -D~Idv~~~q~GG 106 (106)
T 2eke_C 95 -DIIEAHREQIGG 106 (106)
T ss_dssp -EEEEEEECC---
T ss_pred -CEEEEEeecccC
Confidence 679999887653
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.08 E-value=7.3e-10 Score=74.10 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=63.4
Q ss_pred cceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 032861 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (132)
Q Consensus 4 ~~~v~l~~rl~~G~-~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~ 82 (132)
.+.+.|+++..+|+ .+ .+.+.++++++.|++..+++ .++| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 5 ~~~i~ikV~~~~g~~~i-~~~i~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medg---- 72 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQML-EISLSPDSPLKVLMSHYEEA-----MGLS--GHKLSFFFDGTKLSGKELPADLGLESG---- 72 (79)
T ss_dssp CCCEEEEEECSSTTCEE-EEEECTTSCHHHHHHHHHHH-----HTCT--TCCCEEEETTEECCSCCCHHHHTCCTT----
T ss_pred CCEEEEEEEeCCCCEEE-EEEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCC----
Confidence 56799999999996 55 58999999999999999988 2333 889999999999999999999999999
Q ss_pred ceEEEEEE
Q 032861 83 GVIIMHVV 90 (132)
Q Consensus 83 ~~~tmHlv 90 (132)
.+||+.
T Consensus 73 --D~Idv~ 78 (79)
T 3a4r_A 73 --DLIEVW 78 (79)
T ss_dssp --CEEEEE
T ss_pred --CEEEEe
Confidence 467763
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.95 E-value=4.9e-09 Score=71.82 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=59.7
Q ss_pred ceEEEEEEeC---CCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC------ee-c-CCCCccccc
Q 032861 5 ELIDIKFRLY---DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG------KI-L-ENNKTVGQC 73 (132)
Q Consensus 5 ~~v~l~~rl~---~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G------k~-L-eD~~tLs~~ 73 (132)
..|.|+|+.. +| ......+++++||++||++|+..+ ++| ++.|||.|.+ .+ | +|+.+|+.|
T Consensus 8 ~~v~l~I~~~~~~~~-~~~e~~l~~~~TV~~LK~~i~~~~-----gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y 79 (97)
T 1wjn_A 8 QLLTLKIKCSNQPER-QILEKQLPDSMTVQKVKGLLSRLL-----KVP--VSELLLSYESSKMPGREIELENDLQPLQFY 79 (97)
T ss_dssp CEEEEEEEESSCSSS-CCEEEEEETTSBHHHHHHHHHTTT-----TCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGG
T ss_pred ccEEEEEEecCCCCC-cEEEEECCCCCCHHHHHHHHHHHH-----CCC--hhHeEEEEEcCCCCceeeccCCCcccHhhc
Confidence 4477777763 55 455789999999999999999883 344 9999999873 22 4 899999999
Q ss_pred CCCCCCCCCceEEEEEEecC
Q 032861 74 KIPYGEVPGGVIIMHVVVQP 93 (132)
Q Consensus 74 ~I~~gd~~~~~~tmHlv~r~ 93 (132)
++.+| .++|+....
T Consensus 80 ~i~~G------~~I~V~d~~ 93 (97)
T 1wjn_A 80 SVENG------DCLLVRWSG 93 (97)
T ss_dssp TCCTT------CEEEEECCS
T ss_pred CCCCC------CEEEEEecC
Confidence 99999 689987644
No 97
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.5e-07 Score=73.46 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=71.3
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.|.|+++. +|..+ .+.+.+++++..|++..+++ .++| ++++||+|.|+.|.+++|.+++++.+|
T Consensus 27 ~~~I~LkV~~-~g~~v-~fkIk~~t~l~kL~~ay~er-----~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdg----- 92 (200)
T 3pge_A 27 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQTPEDLDMEDN----- 92 (200)
T ss_dssp CCCEEEEEEC-SSCEE-EEEECTTSCTHHHHHHHHHH-----HSSC--GGGEEEEETTEECCTTCCTTTTTCCTT-----
T ss_pred CCeEEEEEec-CCCEE-EEEEecCCHHHHHHHHHHHH-----hCCC--hhhEEEEECCEEcCCCCCHHHcCCCCC-----
Confidence 3458888874 77555 69999999999999999988 2344 999999999999999999999999999
Q ss_pred eEEEEEEecCCCccccccc
Q 032861 84 VIIMHVVVQPSLAKTKTVH 102 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~~~k 102 (132)
.+||++++..++.+...+
T Consensus 93 -D~Idv~~~q~gg~kd~v~ 110 (200)
T 3pge_A 93 -DIIEAHREQIGGGGETIK 110 (200)
T ss_dssp -EEEEEEECCSCCC-CCEE
T ss_pred -CEEEEEeccCcCcCceEE
Confidence 689999999999877655
No 98
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.64 E-value=1.9e-07 Score=67.34 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=65.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~ 84 (132)
+.|.|+++..+|..+ .|.+.+++++..|++..+++. ++| ++++||+|.|+.|.++.|.+++++.+||
T Consensus 39 ~~I~LKV~~qdg~ev-~fkIk~tt~L~KLm~aY~er~-----Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD----- 105 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQ-----GVP--MNSLRFLFEGQRIADNHTPKELGMEEED----- 105 (115)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHH-----TCC--TTSEEEEETTEECCTTCCTTTTTCCTTC-----
T ss_pred CeEEEEEEcCCCCEE-EEEEccCChHHHHHHHHHHHh-----CCC--hhhEEEEECCeECCCCCCHHHcCCCCCC-----
Confidence 568888888889776 589999999999999999882 233 9999999999999999999999999994
Q ss_pred EEEEEEecCC
Q 032861 85 IIMHVVVQPS 94 (132)
Q Consensus 85 ~tmHlv~r~~ 94 (132)
+|++.++..
T Consensus 106 -~IdV~~~Q~ 114 (115)
T 3kyd_D 106 -VIEVYQEQC 114 (115)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEeecc
Confidence 688877643
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.2e-06 Score=68.73 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=69.3
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.|+|+++ .+|..+ .|.|.+++++..|++..+++. ++| ++++||+|.|+.|.+++|.+++++.+|
T Consensus 55 ~e~InLKVk-~dG~eV-~FKIKrtTpL~KLmeAYcERq-----GL~--~~sIRFLFDGqRI~~ddTPeDLdMEDG----- 120 (207)
T 3tix_A 55 ETHINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKRQ-----GKE--MDSLTFLYDGIEIQADQTPEDLDMEDN----- 120 (207)
T ss_dssp CCEEEEEEE-CSSCEE-EEEEETTSCTHHHHHHHHHHT-----TCC--GGGSCEEETTEECCSSCCTTTTTCCTT-----
T ss_pred CCcEEEEEe-cCCCEE-EEEEccCChHHHHHHHHHHHh-----CCC--cccEEEEECCeecCCCCCHHHcCCCCC-----
Confidence 346888887 477665 699999999999999999882 333 899999999999999999999999999
Q ss_pred eEEEEEEecCCCcccc
Q 032861 84 VIIMHVVVQPSLAKTK 99 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~ 99 (132)
.+|+++++..++...
T Consensus 121 -DtIDV~leQ~GG~~~ 135 (207)
T 3tix_A 121 -DIIEAHREQIGGLPS 135 (207)
T ss_dssp -EEEEECCCCCTTGGG
T ss_pred -CEEEEEEeccCCCcc
Confidence 679999998888654
No 100
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.15 E-value=8.9e-06 Score=56.72 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=39.4
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecC
Q 032861 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE 65 (132)
Q Consensus 11 ~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~Le 65 (132)
|-+..+ ....+.+.++.||..+|+.|+++ +++| +++|+|||.|+.|.
T Consensus 18 f~~~~a-~~h~v~I~~~etv~~~ke~V~eq-----TgIp--~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 18 FSLQQM-TAHKIYIHSYNTATIFHELVYKQ-----TKII--SSNQELIYEGRRLV 64 (94)
T ss_dssp EETTTT-EEEEEEEETTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEEEC
T ss_pred EEcccc-eEEEEEeccchHHHHHHHHHHHH-----hCCC--HHHHHHHhCCCccc
Confidence 445666 55678999999999999999998 5566 99999999998774
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.90 E-value=4.3e-06 Score=55.96 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=47.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCee-----cCCCCcccccCCCCCC
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI-----LENNKTVGQCKIPYGE 79 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~-----LeD~~tLs~~~I~~gd 79 (132)
+-||||..+|... +++++++|+.+|+++|++.++ +| ++.|.|.++-.. +.++.+|+++||++||
T Consensus 5 m~lRvrs~~G~~R--i~v~~~~t~~~L~~~I~~~~~-----i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd 73 (80)
T 2pjh_A 5 IIIRVQSPDGVKR--ITATKRETAATFLKKVAKEFG-----FQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGD 73 (80)
T ss_dssp CCCEEECSSEEEE--CCCCSSCCHHHHHHHHHHHTC-----CC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC
T ss_pred EEEEEECCCCCEE--EEcCCcChHHHHHHHHHHHcC-----CC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCC
Confidence 5689999999543 679999999999999999854 22 344444333222 3488899999999996
No 102
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.89 E-value=1.7e-06 Score=68.72 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=1.1
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.|+|++ ..+|..+ .|.+.+++.+..|++..+++. ++| ++++||+|.|+.|.+++|.+++++.+|
T Consensus 19 ~e~InLKV-~qdGseV-~FKIKrtTpL~KLM~AYcERq-----GLs--~~siRFLFDGqRI~dddTPadL~MEDG----- 84 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEI-FFKIKKTTPLRRLMEAFAKRQ-----GKE--MDSLRFLYDGIRIQADQTPEDLDMEDN----- 84 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEE-EEEEccCChHHHHHHHHHHHh-----CCC--ccceEEEECCEecCCCCCHHHcCCCCC-----
Confidence 45577888 5677555 589999999999999988872 344 899999999999999999999999999
Q ss_pred eEEEEEEecCCCcc
Q 032861 84 VIIMHVVVQPSLAK 97 (132)
Q Consensus 84 ~~tmHlv~r~~~~~ 97 (132)
.+|+++.+..++.
T Consensus 85 -DtIDV~leQ~GG~ 97 (227)
T 3v7o_A 85 -DIIEAHREQIGGL 97 (227)
T ss_dssp ------------CC
T ss_pred -CEEEEEecccCCc
Confidence 4689888887774
No 103
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.88 E-value=0.00017 Score=55.72 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=64.3
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.|.|+++- +|..+ .+.+..++....|++..+++ .+.| ++++||+|.|+.+.+++|..++.+.++
T Consensus 19 ~~~i~ikv~~-~~~~v-~~~i~~~~~l~kl~~~y~~~-----~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~----- 84 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQTPEDLDMEDN----- 84 (209)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHH-----HTCC--GGGCEEEETTEECCTTCCTTTTTCCTT-----
T ss_pred CCcEEEEEEc-CCCEE-EEEEeeCCHHHHHHHHHHHh-----hCCC--hheEEEEECCEeccCCCChHHhhhccc-----
Confidence 5668888876 66554 58999999999999999988 2233 999999999999999999999999988
Q ss_pred eEEEEEEecCCCc
Q 032861 84 VIIMHVVVQPSLA 96 (132)
Q Consensus 84 ~~tmHlv~r~~~~ 96 (132)
.+|++.....++
T Consensus 85 -d~I~~~~eq~Gg 96 (209)
T 3uf8_A 85 -DIIEAHREQIGG 96 (209)
T ss_dssp -EEEEEECSCTTC
T ss_pred -ccchhhcccccc
Confidence 467776666654
No 104
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.82 E-value=0.00015 Score=48.27 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=52.8
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE--ecCeec---CCCCcccccCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPYG 78 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI--y~Gk~L---eD~~tLs~~~I~~g 78 (132)
+....|.||+.+|+.+ .-.|..++||.+|.+.|.+. . .+ ....+|+ |-.|.| +.+.||+++|+..+
T Consensus 5 ~~~~~i~iRlpdG~r~-~~~F~~~~tl~~v~~fv~~~-~-----~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~ 75 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVASK-G-----FP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQ 75 (84)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHT-T-----CC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSE
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHc-C-----CC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCC
Confidence 6778999999999765 56999999999999999975 1 11 5667777 446777 56789999999866
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.71 E-value=0.00033 Score=48.70 Aligned_cols=69 Identities=9% Similarity=0.123 Sum_probs=58.0
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.+.|.|+++-.+|.....+.+.+++....|....+++.. + +++.+||+|.|..|..++|.+++++.+||
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g-----~--~~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG-----L--SGRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT-----C--SSSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC-----C--CcccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 567888888888852235899999999999999888732 2 27899999999999999999999999994
No 106
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.57 E-value=8.1e-06 Score=68.64 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=12.6
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.|+|+++- +|..+ .+.+.++++...|++..+++. +++ ++++||+|.|+.|.+++|.+++++.+|
T Consensus 19 ~~~I~LKV~~-~g~~v-~FkIk~~t~l~kLm~aY~~r~-----G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDg----- 84 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQ-----GKE--MDSLRFLYDGIRIQADQTPEDLDMEDN----- 84 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEE-EEEEecCChHHHHHHHHHHHh-----CCC--cceEEEEECCeECCCCCChHHcCCCcc-----
Confidence 4567777775 55444 689999999999999988772 333 899999999999999999999999999
Q ss_pred eEEEEEEecCCCccccc-----------------------cceeeEEEEeeecCCCCc
Q 032861 84 VIIMHVVVQPSLAKTKT-----------------------VHFGVMLELDWTNTNPDI 118 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~~-----------------------~k~~~~~~~~~~~~~~~~ 118 (132)
.+|++..+..++++.+ ..+|..++.+-++.-|=+
T Consensus 85 -D~Idv~~~Q~g~~~~Yl~l~~~Il~~G~~~~dRTG~~T~s~fg~~~rfdl~~gfPll 141 (360)
T 3ix6_A 85 -DIIEAHREQIGGMRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVL 141 (360)
T ss_dssp -------------CHHHHHHHHHHHHHCEEECC----CEEEEEEEEEEEEGGGCCCCC
T ss_pred -chhhhhhccCchHHHHHHHHHHHHHhCcCCCCCCCccEEEeccceeEEecCCCCccc
Confidence 4688888887774321 127777888877765543
No 107
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.50 E-value=0.00095 Score=45.40 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=53.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCcccCCCCCc-ceEEEecCeecCCCCcccccCCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVT-EIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~--~p~d~e~~P~~~~-~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.|.+-+|.....++ -+.+.++++|.+|=..-..+ +| ++ .+||.|-|..|+.++++.+|.+.+||
T Consensus 9 ~~~~~~~~~~~~dl-~f~I~~~t~v~kLi~ayc~~~~I~---------~~~~IrllFDGdRLdp~~tp~DlemeD~D 75 (82)
T 3goe_A 9 LITLLLRSSKSEDL-RLSIPVDFTVKDLIKRYCTEVKIS---------FHERIRLEFEGEWLDPNDQVQSTELEDED 75 (82)
T ss_dssp EEEEEEEESSSCCE-EEEEETTSBHHHHHHHHHHHHTCC---------CCTTCEEEETTEECCTTSBGGGSSCCTTC
T ss_pred HHHHhhhccCCCCe-EEEecCCCCHHHHHHHHHHHcCCC---------cCceEEEEEcCcccCccCChhhhCCcCCc
Confidence 46677777776677 48999999999876655555 44 66 99999999999999999999999996
No 108
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.15 E-value=0.0031 Score=51.55 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=54.3
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEe------cCeecCCCCcccccCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS------SGKILENNKTVGQCKIPY 77 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy------~Gk~LeD~~tLs~~~I~~ 77 (132)
|..++|++.+. + .+..+.|+|++||.++...|.+++|. ..+.++++=-|.- .|+.|++.+||+.|++.+
T Consensus 1 ~~~~~~~~~~~-~-~~~~~~f~~~~~v~~~~~~i~e~~~~---~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~ 75 (371)
T 3ivf_A 1 MVALSLKISIG-N-VVKTMQFEPSTMVYDACRMIRERIPE---ALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRN 75 (371)
T ss_dssp -CCEEEEEEET-T-EEEEEEECTTCBHHHHHHHHHTTCGG---GGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCT
T ss_pred CccEEEEEEec-c-eeEEEEECCCCCHHHHHHHHHHhccc---ccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCC
Confidence 46789999998 4 66789999999999999999999762 1111244444433 478899999999999998
Q ss_pred CC
Q 032861 78 GE 79 (132)
Q Consensus 78 gd 79 (132)
++
T Consensus 76 ~~ 77 (371)
T 3ivf_A 76 GD 77 (371)
T ss_dssp TC
T ss_pred Cc
Confidence 85
No 109
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.10 E-value=0.0026 Score=44.41 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=54.7
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCcccCCCCCcceEEE--ecCeecC--CCCcccccCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKILE--NNKTVGQCKIPYG 78 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~-~p~d~e~~P~~~~~qrLI--y~Gk~Le--D~~tLs~~~I~~g 78 (132)
+..+.|.||+.+|+.+ .-.|..++||.+|.+.|... +. +...+|+ |=.|.|. .+.||+++|+...
T Consensus 21 ~~~~~IqiRlpdG~r~-~rrF~~~~tl~~v~~fv~~~~~~---------~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~ 90 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMKVGYH---------KSLYRLSTSFPRRALEVEGGSSLEDIGITVD 90 (109)
T ss_dssp SSEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHHHTCC---------TTTEEEECSSSCCBCCCCSSCBHHHHTCSSC
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCC
Confidence 4569999999999665 56999999999999999976 22 4556665 3366774 5799999999976
Q ss_pred CCCCceEEEEEE
Q 032861 79 EVPGGVIIMHVV 90 (132)
Q Consensus 79 d~~~~~~tmHlv 90 (132)
.+++|.
T Consensus 91 ------a~L~Ve 96 (109)
T 2cr5_A 91 ------TVLNVE 96 (109)
T ss_dssp ------EEEEEE
T ss_pred ------eEEEEE
Confidence 566553
No 110
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.08 E-value=0.0046 Score=43.22 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=54.3
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE--ecCeecC---CCCcccccCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE---NNKTVGQCKIPYG 78 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI--y~Gk~Le---D~~tLs~~~I~~g 78 (132)
.....|.||+.+|+.+ .-.|..++||.+|.+.|..... .+ .....|+ |-.|.|. .++||+++++...
T Consensus 11 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~-----~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps 82 (109)
T 2dzk_A 11 STIARIQFRLPDGSSF-TNQFPSDAPLEEARQFAAQTVG-----NT--YGNFSLATMFPRREFTREDYKRRLLDLELAPS 82 (109)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSBHHHHHHHHHHHHT-----TS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhccC-----CC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCc
Confidence 4568999999999655 5799999999999999998721 01 3344554 3466674 4789999999865
Q ss_pred CCCCceEEEEEEe
Q 032861 79 EVPGGVIIMHVVV 91 (132)
Q Consensus 79 d~~~~~~tmHlv~ 91 (132)
.++++..
T Consensus 83 ------a~L~v~~ 89 (109)
T 2dzk_A 83 ------ASVVLLP 89 (109)
T ss_dssp ------EEEEEEC
T ss_pred ------eEEEEEE
Confidence 5565543
No 111
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.07 E-value=8.3e-05 Score=61.59 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=0.0
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~ 83 (132)
.+.|.|+++- +|..+ .|.+.++++...|++..+++.. .| +.++||+|.|+.|.+++|.+++++.+||
T Consensus 28 ~~~i~lkv~~-~~~~~-~~~i~~~~~~~~l~~~y~~~~g-----~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d---- 94 (389)
T 4da1_A 28 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQG-----KE--MDSLRFLYDGIRIQADQAPEDLDMEDND---- 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEE-EEEECCCChHHHHHHHHHHHhC-----CC--cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 3557788875 55444 5899999999999999988832 33 9999999999999999999999999994
Q ss_pred eEEEEEEecCCCcccc
Q 032861 84 VIIMHVVVQPSLAKTK 99 (132)
Q Consensus 84 ~~tmHlv~r~~~~~~~ 99 (132)
+|++.+...++..-
T Consensus 95 --~i~~~~~q~gg~n~ 108 (389)
T 4da1_A 95 --IIEAHREQIGGENL 108 (389)
T ss_dssp ----------------
T ss_pred --Eeeeeecccccccc
Confidence 57777776666544
No 112
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.05 E-value=0.0016 Score=44.05 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=55.6
Q ss_pred eEEEEEEe--CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 6 LIDIKFRL--YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 6 ~v~l~~rl--~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
-|+|++.+ ..| +.+.+.++...||.+|++.+.+.+. -+..+.+--++|....|.+|.++++|++|+|.+||
T Consensus 4 yI~ITidl~~y~~-~~~DLRIP~~~tvK~Li~~l~ea~~--l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 4 YIDITIDLKHYNG-SVFDLRLSDYHPVKKVIDIAWQAQS--VSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp EEEEEEECTTTTC-CEEEEEEETTSBTTHHHHHHHHHSC--CCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred EEEEEEEeeccCC-ceEEEECCCchhHHHHHHHHHHHhC--CCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 36677776 566 4568999999999999999998843 11222221488999999999999999999999996
No 113
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.05 E-value=0.0039 Score=44.69 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=51.7
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCcccCCCCCcceEEE--ecCeec---CCCCcccccCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPY 77 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~-~p~d~e~~P~~~~~qrLI--y~Gk~L---eD~~tLs~~~I~~ 77 (132)
+..+.|.||+.+|+.+ .-.|..+.||.+|.+.|... .+ .....|+ |-.|.| +.++||.++++..
T Consensus 41 ~~~t~IqIRlPdG~rl-~~rF~~~~tl~~V~~fV~~~~~~---------~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp SCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHCC---------TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence 5679999999999655 57999999999999999876 22 4556665 447778 3489999999986
Q ss_pred C
Q 032861 78 G 78 (132)
Q Consensus 78 g 78 (132)
.
T Consensus 111 s 111 (124)
T 1wj4_A 111 Q 111 (124)
T ss_dssp S
T ss_pred c
Confidence 5
No 114
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.91 E-value=0.0047 Score=44.30 Aligned_cols=68 Identities=22% Similarity=0.373 Sum_probs=52.2
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE--ecCeecC-CCCcccccCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE-NNKTVGQCKIPYG 78 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI--y~Gk~Le-D~~tLs~~~I~~g 78 (132)
+....|.||+.+|+.+ .-.|..++||.+|.+.|....+ + .. .....|+ |-.|.|+ ++.||+++|+...
T Consensus 50 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~-~---~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVDARP-A---MA--ATSFVLMTTFPNKELADENQTLKEANLLNA 120 (127)
T ss_dssp SCCCCEEEEETTTTEE-EEECCSSCBHHHHHHHHHHHCS-G---GG--TSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHhCc-C---CC--CCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence 5568999999999765 5799999999999999998743 1 00 3445665 4467785 5799999999865
No 115
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.90 E-value=0.0085 Score=41.71 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=55.1
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.+.|+|+++- +|.. .-|.+-.++..+.|.+..+++. +. +++++|++|.|..+.++.|.+++++.+||
T Consensus 19 ~~~IniKV~~-~g~e-v~FkIK~tt~l~KL~~aYc~r~-----gv--~~~sirFlfDG~rI~~~~TP~~L~meD~D 85 (95)
T 2l76_A 19 PRLFPLKIRC-RADL-VRLPLRMSEPLQSVVDHMATHL-----GV--SPSRILLLFGETELSPTATPRTLKLGVAD 85 (95)
T ss_dssp CCCEEEEEEC-SSSE-EEEEECSSSCTHHHHHHHHHHH-----TS--CGGGEEEEETTEECCTTSCHHHHTCCSSC
T ss_pred CCeEEEEEEc-CCcE-EEEEEecCChHHHHHHHHHhhc-----CC--ChhhEEEEECCcCCCCCCCHhHcCCCCCC
Confidence 4458888884 5534 4589999999999998888772 22 29999999999999999999999999996
No 116
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.68 E-value=0.0016 Score=47.45 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=51.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCcc--------------------------cCCCCC--cceEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKT--------------------------IVPKAV--TEIKL 57 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~--~p~d~e--------------------------~~P~~~--~~qrL 57 (132)
-|++++.+| .+.++.|+.+.+|.+++..|..+ ++...| ..|... ..+||
T Consensus 13 ~LkV~llDg-~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDG-TVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTS-CEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCC-CEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 489999999 56689999999999999999998 331111 001111 24555
Q ss_pred Ee--cCeecCCCCcccccCCCCCC
Q 032861 58 IS--SGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 58 Iy--~Gk~LeD~~tLs~~~I~~gd 79 (132)
-. .+..|+++.||.+.||.+++
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTS
T ss_pred cccCCCCcccCCCcHHHcCCCCCC
Confidence 22 35789999999999999983
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.82 E-value=0.082 Score=37.61 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=48.5
Q ss_pred eEEEEEEeCC-CCeeeeEEeCCcchHHHHHHHHHhhCCCC--cccCCCCCcceEEEe----cCeecCCCC----------
Q 032861 6 LIDIKFRLYD-GSDIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS----SGKILENNK---------- 68 (132)
Q Consensus 6 ~v~l~~rl~~-G~~i~~~~v~~s~TV~~LK~~I~~~~p~d--~e~~P~~~~~qrLIy----~Gk~LeD~~---------- 68 (132)
.+.|.+...+ +.+..++.+=..+||.++|+||...+=++ +-..| .++++.|=+ +|++|.|..
T Consensus 11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP-~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWP-RPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCC-CCCceeeEEecCCCCccccccCccceecCcce
Confidence 3455554433 22334567778999999999999882212 11222 367888866 356776533
Q ss_pred ---cccccCCCCCCCCCceEEEEEEe
Q 032861 69 ---TVGQCKIPYGEVPGGVIIMHVVV 91 (132)
Q Consensus 69 ---tLs~~~I~~gd~~~~~~tmHlv~ 91 (132)
||+.|++++| ++|-|+.
T Consensus 90 rLNTL~HY~V~dg------atl~l~~ 109 (111)
T 4e71_A 90 RVNTLMHYNVRDG------ATLILSK 109 (111)
T ss_dssp CCCBHHHHTCCTT------CEEEEEE
T ss_pred EecchhhcCCCCC------CEEEEEe
Confidence 6788999998 6776654
No 118
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.48 E-value=0.11 Score=38.22 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=51.7
Q ss_pred eEEEEEEeCCC-----CeeeeEEeCCcchHHHHHHHHHhhCCCC--cccCCCCCcceEEEe----cCe-ecCCCC-----
Q 032861 6 LIDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS----SGK-ILENNK----- 68 (132)
Q Consensus 6 ~v~l~~rl~~G-----~~i~~~~v~~s~TV~~LK~~I~~~~p~d--~e~~P~~~~~qrLIy----~Gk-~LeD~~----- 68 (132)
.+.|.+....| .+-.++.|=..+||.++|+||...+=++ +-.+| .++++-|=+ +|+ +|.|..
T Consensus 24 ~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP-~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 24 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp EEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCC-CGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCC-CccceeEEEecCCcCceEeeccCCcccc
Confidence 35555545432 2344678888999999999999882222 11233 377777755 344 475532
Q ss_pred --------cccccCCCCCCCCCceEEEEEEecCC
Q 032861 69 --------TVGQCKIPYGEVPGGVIIMHVVVQPS 94 (132)
Q Consensus 69 --------tLs~~~I~~gd~~~~~~tmHlv~r~~ 94 (132)
||+.|++++| ++|-|+.+..
T Consensus 103 ~~~wkrLNTL~HY~V~Dg------a~l~l~~~~~ 130 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDG------ATVALVPCLT 130 (138)
T ss_dssp ETTEEECCBHHHHTCCTT------CEEEEEEC--
T ss_pred cCCceeecchhccCCCCC------CEEEEEECCC
Confidence 8999999999 6787766644
No 119
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.77 E-value=0.35 Score=35.12 Aligned_cols=66 Identities=21% Similarity=0.311 Sum_probs=45.5
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCC--cccCCCCCcceEEEe-cC---e-ecCCCC-------------cccccCCCCCC
Q 032861 20 GPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS-SG---K-ILENNK-------------TVGQCKIPYGE 79 (132)
Q Consensus 20 ~~~~v~~s~TV~~LK~~I~~~~p~d--~e~~P~~~~~qrLIy-~G---k-~LeD~~-------------tLs~~~I~~gd 79 (132)
.++.+=..+||.++|++|...+=++ .-..| .++++.|=+ .| + +|.|.. ||+.|+|++|
T Consensus 19 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dg- 96 (127)
T 3h6n_A 19 LSVRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEG- 96 (127)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTT-
T ss_pred eeeeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCC-
Confidence 4667778999999999999882212 11233 478888876 34 3 476532 6778999998
Q ss_pred CCCceEEEEEEec
Q 032861 80 VPGGVIIMHVVVQ 92 (132)
Q Consensus 80 ~~~~~~tmHlv~r 92 (132)
++|-|+.+
T Consensus 97 -----atv~l~~~ 104 (127)
T 3h6n_A 97 -----ASLAMSLI 104 (127)
T ss_dssp -----CEEEEEEC
T ss_pred -----CEEEEEEc
Confidence 67777655
No 120
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.79 E-value=0.45 Score=34.02 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=49.0
Q ss_pred EEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCC--cccCCCCCcceEEEe-cC---e-ecCCC----------
Q 032861 7 IDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS-SG---K-ILENN---------- 67 (132)
Q Consensus 7 v~l~~rl~~G--~~i~~~~v~~s~TV~~LK~~I~~~~p~d--~e~~P~~~~~qrLIy-~G---k-~LeD~---------- 67 (132)
+.|.+....| ....++.+=..+||.++|++|...+=.+ .-..| .++++.|=+ .| + +|.|.
T Consensus 14 ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~w 92 (117)
T 4e74_A 14 LVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRP-KAADMDLEWRQGSGARMILQDEDITTKIENDW 92 (117)
T ss_dssp EEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECTTSCEEEECSSSTTCCC---C
T ss_pred EEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCC-CCCceeEEEecCCCCceEeecCCCccEecCcc
Confidence 4454443332 2334567778999999999999882212 11233 378888865 44 3 46542
Q ss_pred ---CcccccCCCCCCCCCceEEEEEEecC
Q 032861 68 ---KTVGQCKIPYGEVPGGVIIMHVVVQP 93 (132)
Q Consensus 68 ---~tLs~~~I~~gd~~~~~~tmHlv~r~ 93 (132)
-||+.|++++| ++|-|+.+.
T Consensus 93 krLNTL~HY~V~dg------atl~l~~~~ 115 (117)
T 4e74_A 93 KRLNTLAHYQVPDG------SVVALVSKQ 115 (117)
T ss_dssp CCCCBHHHHTCCTT------CEEEEEECC
T ss_pred eEeccccccCCCCC------CEEEEEeCC
Confidence 26777999988 677776553
No 121
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.00 E-value=1.4 Score=31.93 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=39.2
Q ss_pred eeeEEeCCcchHHHHHHHHHhh-CCCCcccCC--CCCcceEEEe-cC---eecCCC--------------CcccccCCCC
Q 032861 19 IGPFRYSSASTVDMLKQRIVSD-WPKGKTIVP--KAVTEIKLIS-SG---KILENN--------------KTVGQCKIPY 77 (132)
Q Consensus 19 i~~~~v~~s~TV~~LK~~I~~~-~p~d~e~~P--~~~~~qrLIy-~G---k~LeD~--------------~tLs~~~I~~ 77 (132)
-.++.+=..+||.++|++|... +. + .+.| +.++++.|=+ .| ++|.|. -||+.|++++
T Consensus 40 ~v~VkVLdCDTItQVKEKILdavYk-~-k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~D 117 (126)
T 3kuz_A 40 NISVNVLDCDTIGQAKEKIFQAFLS-K-NGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISN 117 (126)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHHH-H-HSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCT
T ss_pred ceEeeeecCCcHHHHHHHHHHHHhc-c-CCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCC
Confidence 3467777899999999999977 31 0 1222 1266677755 23 355332 1455688888
Q ss_pred CCCCCceEEEEEE
Q 032861 78 GEVPGGVIIMHVV 90 (132)
Q Consensus 78 gd~~~~~~tmHlv 90 (132)
| +++-|+
T Consensus 118 g------atlal~ 124 (126)
T 3kuz_A 118 G------STIKVF 124 (126)
T ss_dssp T------CEEEEE
T ss_pred C------CEEEEe
Confidence 8 566554
No 122
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=90.98 E-value=1 Score=30.74 Aligned_cols=71 Identities=8% Similarity=0.080 Sum_probs=55.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tm 87 (132)
++.+...+|.. ..+.+.|++++.+|=+...+++. . ++++-.|.|.++.|+=+..+.-.||++| +.+
T Consensus 11 ~v~Vl~~n~rr-~~VKvtp~t~L~~VL~eaC~K~g-----l--~~~~~~Lkh~~k~lDLSlpfRlsgLpnn------AkL 76 (90)
T 2al3_A 11 AVSVLAPNGRR-HTVKVTPSTVLLQVLEDTCRRQD-----F--NPSEYDLKFQRTVLDLSLQWRFANLPNN------AKL 76 (90)
T ss_dssp CEEEECTTSCE-EEECCCTTSBHHHHHHHHHHHTT-----C--CGGGCEEEETTEEESSSCBHHHHCCCSS------CEE
T ss_pred EEEEEcCCCcE-EEEEECCCCCHHHHHHHHHHHhC-----C--ChhhCeEEeCCEeccccceeEecCCCCC------CEE
Confidence 67888888844 57899999999997555555532 1 2778899999999999999999999988 677
Q ss_pred EEEec
Q 032861 88 HVVVQ 92 (132)
Q Consensus 88 Hlv~r 92 (132)
-|+..
T Consensus 77 ELv~~ 81 (90)
T 2al3_A 77 EMVPV 81 (90)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 76554
No 123
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.39 E-value=1.7 Score=33.09 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=43.6
Q ss_pred EEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCc-ceEE--Eec---CeecCC-CCcccccCCCCC
Q 032861 8 DIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKL--ISS---GKILEN-NKTVGQCKIPYG 78 (132)
Q Consensus 8 ~l~~rl~~G~-~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~-~qrL--Iy~---Gk~LeD-~~tLs~~~I~~g 78 (132)
.++|...+.. ....+.++..+||.+|++.+...+. +| .+ ..|| +|. ...|+| +.||++++|.++
T Consensus 129 ~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~-----i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~ 200 (217)
T 4a3p_A 129 ELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFS-----IP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQG 200 (217)
T ss_dssp EEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTT-----CC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTT
T ss_pred EEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhC-----CC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCC
Confidence 3444433321 3345788999999999999999843 32 54 6888 332 235655 579999999988
No 124
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=90.17 E-value=1.8 Score=38.83 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=50.5
Q ss_pred EEEEEEeCCC-----CeeeeEEeCCcchHHHHHHHHHhhCCCC--cccCCCCCcceEEEe-c---Ce-ecCCCC------
Q 032861 7 IDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS-S---GK-ILENNK------ 68 (132)
Q Consensus 7 v~l~~rl~~G-----~~i~~~~v~~s~TV~~LK~~I~~~~p~d--~e~~P~~~~~qrLIy-~---Gk-~LeD~~------ 68 (132)
+.|.+...+| ....++.|=.++||.++|++|...+=++ +-.+| .++++.|=+ . |+ +|.|.+
T Consensus 258 ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 336 (644)
T 3hm6_X 258 LTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSEVQ 336 (644)
T ss_dssp EEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred EEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCCcceEEeeCCCCceeecccCccceec
Confidence 4555544433 2334577778999999999999772112 11233 377888865 2 34 466644
Q ss_pred -------cccccCCCCCCCCCceEEEEEEecC
Q 032861 69 -------TVGQCKIPYGEVPGGVIIMHVVVQP 93 (132)
Q Consensus 69 -------tLs~~~I~~gd~~~~~~tmHlv~r~ 93 (132)
||+.|++++| ++|-|+.+.
T Consensus 337 ~~wkrLNTL~HY~V~dg------a~v~L~p~~ 362 (644)
T 3hm6_X 337 GLWRRLNTLQHYKVPDG------ATVALVPCL 362 (644)
T ss_dssp TTEEECCBTTTTTCCTT------CEEEEEEC-
T ss_pred CcceeecchhhcCCCCC------cEEEEEecc
Confidence 8889999999 677666554
No 125
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=88.11 E-value=5.8 Score=30.45 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=39.1
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCc-ceEEEe-c----CeecCC-CCcccccCCCCC
Q 032861 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLIS-S----GKILEN-NKTVGQCKIPYG 78 (132)
Q Consensus 20 ~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~-~qrLIy-~----Gk~LeD-~~tLs~~~I~~g 78 (132)
....++..+||.+|++.+...+. +| .+ ..||-. . ...|+| +.||++++|.++
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~-----i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~ 212 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN-----IP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQG 212 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT-----CC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTT
T ss_pred EEEEecccCcHHHHHHHHHHHhC-----CC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCC
Confidence 34677999999999999999843 22 54 688843 2 236655 699999999988
No 126
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=87.64 E-value=4.1 Score=36.44 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=50.5
Q ss_pred EEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCC--cccCCCCCcceEEEe----cCe-ecCCC----------
Q 032861 7 IDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS----SGK-ILENN---------- 67 (132)
Q Consensus 7 v~l~~rl~~G--~~i~~~~v~~s~TV~~LK~~I~~~~p~d--~e~~P~~~~~qrLIy----~Gk-~LeD~---------- 67 (132)
+.|.+...+| ....++.|=.++||.++|++|...+=++ +-.+| .++++.|=+ .|+ +|.|.
T Consensus 234 ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~w 312 (627)
T 3ig3_A 234 LTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRP-KAEDMDLEWRQGRMARIILQDEDITTKIECDW 312 (627)
T ss_dssp EEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEESCSSCEEEECSSSTTCCEETTE
T ss_pred EEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCccceeEeeCCCCceeeccCCccccccCce
Confidence 4555544443 2334677778999999999999882112 11233 478888865 234 45442
Q ss_pred ---CcccccCCCCCCCCCceEEEEEEecC
Q 032861 68 ---KTVGQCKIPYGEVPGGVIIMHVVVQP 93 (132)
Q Consensus 68 ---~tLs~~~I~~gd~~~~~~tmHlv~r~ 93 (132)
-||+.|++++| ++|-|+.+.
T Consensus 313 krLNTL~HY~V~Dg------a~v~L~p~~ 335 (627)
T 3ig3_A 313 KRVNSLAHYQVTDG------SLVALVPKQ 335 (627)
T ss_dssp EECCBTTTTTCCTT------CEEEEEEC-
T ss_pred eEecchhhcCCCCC------ceEEEEecc
Confidence 26888999998 677776654
No 127
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=80.84 E-value=2.5 Score=29.65 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=31.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~ 40 (132)
+.+.|.+.+.+|.- ..++++.+.|+.++|+.++++
T Consensus 18 ~~v~v~~LlPnGi~-i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGMI-VTLECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSCE-EEEEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEE-EEEEeeccccHHHHHHHHHHH
Confidence 66999999999954 478999999999999999988
No 128
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=79.71 E-value=12 Score=25.29 Aligned_cols=72 Identities=6% Similarity=0.044 Sum_probs=50.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCee--cCCCCcccccCCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI--LENNKTVGQCKIPYGE 79 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~--LeD~~tLs~~~I~~gd 79 (132)
.+-|.-+.-..-....+.++..+|+.++-++++...= + -..++.+.-+|..+.|+- |.++.|+++.||..-+
T Consensus 3 ~~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~V-G-rrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 3 AFPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCV-N-RRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTB-T-TTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred ccceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhc-c-eeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 3444444444433334788999999999999997610 0 112122558999999998 9999999999998654
No 129
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=71.50 E-value=31 Score=32.66 Aligned_cols=79 Identities=13% Similarity=0.228 Sum_probs=55.7
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCcccCCCCCcceEEEecCe-----ec-CCCCcccccC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQCK 74 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~---~p~d~e~~P~~~~~qrLIy~Gk-----~L-eD~~tLs~~~ 74 (132)
.+.|.|.|.+++|. +.++++..++|++++|+.|+++ .| ....-.++++-.+.+-.+ .+ ++.+.|.++.
T Consensus 49 ~~~v~vd~LLPnGi-~i~~~v~~~~Tl~~iK~~lw~~A~~~p--l~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~ 125 (1092)
T 2y3a_A 49 DGAISVDFLLPTGI-YIQLEVPREATISYIKQMLWKQVHNYP--MFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVR 125 (1092)
T ss_dssp CSEEEEEEECTTCC-EEEEEEETTCBHHHHHHHHHHHGGGST--TTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGC
T ss_pred CCceEEEEECCCce-EEEEEecCcccHHHHHHHHHHHHHhCC--chhccCCcceeEEEEecCCceEEEeecCceeeEeec
Confidence 47799999999995 4479999999999999999988 32 111223366667766332 24 6668888876
Q ss_pred CCCCCCCCceEEEEEEec
Q 032861 75 IPYGEVPGGVIIMHVVVQ 92 (132)
Q Consensus 75 I~~gd~~~~~~tmHlv~r 92 (132)
.-.+ .+.++-+
T Consensus 126 ~~~p-------~l~lve~ 136 (1092)
T 2y3a_A 126 PFLP-------VLKLVTR 136 (1092)
T ss_dssp BSSS-------CEEEEES
T ss_pred ccce-------EEEEEec
Confidence 5433 3677666
No 130
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.18 E-value=4.3 Score=27.74 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=51.1
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE---ecCeecCCCCcccccCCCC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPY 77 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI---y~Gk~LeD~~tLs~~~I~~ 77 (132)
|.++.|-+..... +-..+.|+|..+..+|=-.|-+++.-| ++..-|. -++..|+=+.+|.+|||.+
T Consensus 8 E~TvRLvVNy~~t-QKtVvRVSP~vpL~ellp~IC~Kcefd-------p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKT-QKTIVRVSPHASLQELAPIICSKCEFD-------PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTT-EEEEEEECSSSCTTTHHHHHHHHTTCC-------TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCc-ceeEEEeCCCCcHHHHHHHHhhcccCC-------hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 5778888888877 445689999999999999999984411 4444443 3566888899999999995
No 131
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=68.70 E-value=15 Score=24.69 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=25.6
Q ss_pred cceEEEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhh
Q 032861 4 EELIDIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSD 40 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~-~s~TV~~LK~~I~~~ 40 (132)
|..|+-+| .+..+...+.|+ ...||.+||..|.++
T Consensus 6 mS~V~YKF--kS~k~~~~v~fdG~~Isv~dLKr~I~~~ 41 (86)
T 2c7h_A 6 MSCVHYKF--SSKLNYDTVTFDGLHISLCDLKKQIMGR 41 (86)
T ss_dssp BEEEEEEE--TTCSSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred eeEEEEEE--eecCCcceEEEcCCEEEHHHHHHHHHHH
Confidence 44455444 666666777885 567999999999987
No 132
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.91 E-value=13 Score=25.60 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=45.8
Q ss_pred cceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CC--CCc---ccCCCCCcceEEEecCeecCCCCcccccC
Q 032861 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WP--KGK---TIVPKAVTEIKLISSGKILENNKTVGQCK 74 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~--~p--~d~---e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~ 74 (132)
-.++.|+|-..||+. ..+.|++++|++++-+.+.++ .. .+| |..|. ++.-|.++|.+.|-+.-
T Consensus 7 ~~k~vvkvf~~Dgss-ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~-------L~~ER~~EDHE~vvevl 76 (100)
T 1wgr_A 7 GRPHVVKVYSEDGAC-RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPH-------LALERGLEDHESVVEVQ 76 (100)
T ss_dssp CSCEEEEEEETTSCE-EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETT-------TTEEEEECSSSCHHHHH
T ss_pred CCCEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCC-------CCcEEeccCchhHHHHH
Confidence 345889999999965 479999999999999999998 22 112 34431 12347789988887764
No 133
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=63.81 E-value=9.7 Score=23.54 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=32.9
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcce--EEEecCeecCCCCcccccCCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEI--KLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~q--rLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.+++....||.+|.+.+...+| + .... .+..+|+....+ ..+++||
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p-~-------~~~v~~~v~vNg~~v~~~-----~~L~~gD 66 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYP-Q-------INNKKFQVAVNEEFVQKS-----DFIQPND 66 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCG-G-------GTTCCCEEEETTEEECTT-----SEECTTC
T ss_pred EEECCCCCCHHHHHHHHHHHCc-c-------hhcceEEEEECCEECCCC-----CCcCCCC
Confidence 4566778899999999988765 1 1334 678889888653 4577775
No 134
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=62.27 E-value=17 Score=24.44 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=28.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p 42 (132)
.++-|+|-.-+ ++..+.++++.+..+||.+|..++.
T Consensus 11 ~~~KVK~yy~D--DIiAIrvP~di~~~~L~dKi~~RLk 46 (85)
T 1ip9_A 11 KTTKIKFYYKD--DIFALMLKGDTTYKELRSKIAPRID 46 (85)
T ss_dssp CCEEEEECBTT--CCEEEEECSCCCHHHHHHHHHHHHT
T ss_pred CceEEEEEecC--cEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44555554443 7889999999999999999999965
No 135
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=61.13 E-value=14 Score=23.58 Aligned_cols=49 Identities=10% Similarity=0.257 Sum_probs=33.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCC
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~ 68 (132)
.|++++. |.....+++++..||++|=+.+. +| ++..-..-+|+++.-+.
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~Lg--l~---------~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDDDGTYADLVRAVD--LS---------PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECS-SSSEEEEECSTTCSHHHHHHTTC--CC---------SSCCCEECCCCCCCTTS
T ss_pred EEEEEEe-CccceeEEcCCCCcHHHHHHHcC--CC---------cceEEEEECCEECCHHH
Confidence 4667777 43445579999999988754432 33 66666778999885554
No 136
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=60.21 E-value=17 Score=24.16 Aligned_cols=38 Identities=5% Similarity=0.032 Sum_probs=30.2
Q ss_pred eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCe
Q 032861 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (132)
Q Consensus 18 ~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk 62 (132)
....+.+.++.+..+|+++|+++.+ .| ++...|-|.-.
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~-----l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLE-----LR--LEHTKLSYRPR 51 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTT-----CC--GGGCCEEECCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC-----CC--cceeEEEeeCC
Confidence 3457899999999999999999954 22 77788877653
No 137
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=59.95 E-value=30 Score=21.89 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=34.4
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCccc-CCCC----CcceEEEecCeecCCCCcccccCCCCCC
Q 032861 20 GPFRYSSASTVDMLKQRIVSDWPKGKTI-VPKA----VTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 20 ~~~~v~~s~TV~~LK~~I~~~~p~d~e~-~P~~----~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
..++++...||++|.+.+.+.+| ++.. .-.. .....+.-+|+.... +.-+++||
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p-~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gD 78 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHP-ALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGD 78 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCG-GGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHCc-HHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCC
Confidence 35777778899999999998865 1110 0000 123577778887765 34577774
No 138
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=53.90 E-value=76 Score=25.21 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=30.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~ 41 (132)
.+.+++.+.+|+. ..+.+++++|+.+|=+.|.+.+
T Consensus 85 ~~~~~V~l~dg~~-~~~~vd~~tt~~el~~~v~~~l 119 (371)
T 3ivf_A 85 QRPLKIRMLDGTV-KTIMVDDSKTVTDMLMTICARI 119 (371)
T ss_dssp EEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHHHT
T ss_pred eeEEEEECcCCCE-EEEEECCCCCHHHHHHHHHHHc
Confidence 3678899999955 4789999999999999999883
No 139
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=53.76 E-value=21 Score=24.21 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=45.6
Q ss_pred eeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCC--c----ceEEEecC-eecCC------CCcccccCCCCCCCCCceE
Q 032861 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV--T----EIKLISSG-KILEN------NKTVGQCKIPYGEVPGGVI 85 (132)
Q Consensus 19 i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~--~----~qrLIy~G-k~LeD------~~tLs~~~I~~gd~~~~~~ 85 (132)
..++++++++|..+|=+.+.+.-.-.. -.| +. . .-.|+..+ ..|+. +++|.++|+.+|+
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~ql-k~P-Sltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~------ 77 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQM-KSP-AITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ------ 77 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCC-SSC-EEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC------
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhc-cCC-eeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC------
Confidence 346899999999999999998510000 011 11 1 23343333 23433 4678999999883
Q ss_pred EEEEEecCCCccccccceeeEEEEeee
Q 032861 86 IMHVVVQPSLAKTKTVHFGVMLELDWT 112 (132)
Q Consensus 86 tmHlv~r~~~~~~~~~k~~~~~~~~~~ 112 (132)
.+|+. .+.. ...+.+++.|+
T Consensus 78 ei~Vt------D~~~-p~~~~~rl~f~ 97 (98)
T 1y8x_B 78 ELAVA------DVTT-PQTVLFKLHFT 97 (98)
T ss_dssp EEEEE------CTTC-SSCEEEEEEC-
T ss_pred EEEEE------CCCC-cccEEEEEEec
Confidence 46652 2222 36677888775
No 140
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=52.59 E-value=22 Score=21.44 Aligned_cols=29 Identities=17% Similarity=0.065 Sum_probs=21.7
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~ 40 (132)
+++.+.+|. ..+++...|+.++-+.+...
T Consensus 3 i~i~~p~g~---~~~~~~g~T~~dla~~i~~~ 31 (73)
T 2kmm_A 3 VMVFTPKGE---IKRLPQGATALDFAYSLHSD 31 (73)
T ss_dssp EEEECTTCC---EEEECTTCBHHHHHHHHCSH
T ss_pred EEEEcCCCC---EEEcCCCCcHHHHHHHHhhc
Confidence 566677883 35888899999998877543
No 141
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=50.60 E-value=88 Score=24.43 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=31.0
Q ss_pred eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCe
Q 032861 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (132)
Q Consensus 18 ~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk 62 (132)
....+...+..|+.++++.++++. +++ ++.|.|+|.|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t-----~i~--~~~q~~l~~~~ 359 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQT-----KII--SSNQELIYEGR 359 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHH-----CCC--STTEEEESSSS
T ss_pred eEEEEEcCchhHHHHHHHHHHHhc-----CCC--hhhhHHHhcCC
Confidence 555678889999999999999882 233 89999999994
No 142
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=50.14 E-value=54 Score=21.89 Aligned_cols=57 Identities=7% Similarity=0.125 Sum_probs=42.7
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC--eecCCCCcccccCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYG 78 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G--k~LeD~~tLs~~~I~~g 78 (132)
.+.++..+|+.++-++++..-= +.--.|.+-.-.|..+.| +.|..+.|+++.||..-
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsV-GrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~ 74 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSI-NRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPT 74 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTB-TTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTT
T ss_pred EEEecCCCcHHHHHHHHhhhhc-ceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCc
Confidence 3678999999999999997610 000112224468889999 99999999999999865
No 143
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.14 E-value=1.3e+02 Score=25.99 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=51.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecC-----eecCCCCcccccCCCCCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG-----KILENNKTVGQCKIPYGEV 80 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~G-----k~LeD~~tLs~~~I~~gd~ 80 (132)
.+.++|.+.|| .+ .+.+++++|+.+|=..|...+. +. .....=|.|.. ..|+.++.+.+.++..+
T Consensus 4 ~i~v~V~llDg-t~-e~~vd~~tt~~ell~~V~~~Lg-----L~-e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~-- 73 (575)
T 2i1j_A 4 SMNVRVTTMDA-EL-EFAIQQTTTGKQLFDQVVKTIG-----LR-EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKE-- 73 (575)
T ss_dssp EEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHT-----CC-CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCC--
T ss_pred eEEEEEEeCCC-eE-EEEECCCCCHHHHHHHHHHHcC-----CC-CccceeEEEEecCcchhHhhccccHHHhcccCC--
Confidence 58899999999 54 5999999999999999998822 10 13334444432 36666777776655433
Q ss_pred CCceEEEEEEecCCCc
Q 032861 81 PGGVIIMHVVVQPSLA 96 (132)
Q Consensus 81 ~~~~~tmHlv~r~~~~ 96 (132)
.+..+++-++.-++
T Consensus 74 --~~~~L~FRvkfy~~ 87 (575)
T 2i1j_A 74 --NPLQFKFRAKFYPE 87 (575)
T ss_dssp --SSEEEEEEESSCCS
T ss_pred --CCeEEEEEEEEcCC
Confidence 23556666654443
No 144
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=45.06 E-value=61 Score=21.01 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=40.6
Q ss_pred EEEEEEeCC------CCeeeeEEeCCcchHHHHHHHHHhhCCCCccc-C----CCCCcceEEEecCeecCCCCcccccCC
Q 032861 7 IDIKFRLYD------GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTI-V----PKAVTEIKLISSGKILENNKTVGQCKI 75 (132)
Q Consensus 7 v~l~~rl~~------G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~-~----P~~~~~qrLIy~Gk~LeD~~tLs~~~I 75 (132)
..|++++.. |..-..+++++..||.+|.+.+...+| ++.. . ..-.....+.-+|+.... +..+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p-~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L 83 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHE-KFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL 83 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCG-GGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHCh-hHHHHhhccccccCCcEEEEECCEECCC-----CCCC
Confidence 345555533 322335677788999999999988765 1111 0 000244677788887753 4567
Q ss_pred CCCC
Q 032861 76 PYGE 79 (132)
Q Consensus 76 ~~gd 79 (132)
++||
T Consensus 84 ~dGD 87 (98)
T 1vjk_A 84 KDGD 87 (98)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8885
No 145
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=44.83 E-value=24 Score=27.52 Aligned_cols=35 Identities=14% Similarity=-0.012 Sum_probs=30.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~ 40 (132)
..+.+++.+.||+. ..+.+++++|+.+|=+.|.+.
T Consensus 16 ~~~~~~V~lldgt~-~~~~vd~~tt~~el~~~v~~~ 50 (296)
T 3qij_A 16 FQGHCKVSLLDDTV-YECVVEKHAKGQDLLKRVCEH 50 (296)
T ss_dssp -CCEEEEECTTSCE-EEEECCTTCBHHHHHHHHHHH
T ss_pred ceEEEEEEccCCCE-EEEEECCCCCHHHHHHHHHHH
Confidence 45889999999965 479999999999999999998
No 146
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=44.35 E-value=1e+02 Score=23.38 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=48.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEec---C--eecCCCCcccccCCCCCCCC
Q 032861 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPYGEVP 81 (132)
Q Consensus 7 v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~---G--k~LeD~~tLs~~~I~~gd~~ 81 (132)
|.+++.+.|| .+ .+.+++++|+.+|=+.|.+.+. +. ..+.-=|.|. | ..|+.++.+.+.++..+
T Consensus 2 i~~~V~l~d~-~~-~~~v~~~tt~~el~~~v~~~l~-----L~-e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~--- 70 (294)
T 1ef1_A 2 ISVRVTTMDA-EL-EFAIQPNTTGKQLFDQVVKTIG-----LR-EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKE--- 70 (294)
T ss_dssp EEEEEEETTE-EE-EEEECTTCBHHHHHHHHHHHHT-----CC-CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCC---
T ss_pred EEEEEEECCc-eE-EEEECCCCcHHHHHHHHHHHcC-----CC-CcceeEEEEECCCCceeecccccCHHhhccCCC---
Confidence 6889999999 55 5999999999999999998822 10 0333334332 2 25666777776554333
Q ss_pred CceEEEEEEecCC
Q 032861 82 GGVIIMHVVVQPS 94 (132)
Q Consensus 82 ~~~~tmHlv~r~~ 94 (132)
.+..+++-++.-
T Consensus 71 -~~~~l~fr~kf~ 82 (294)
T 1ef1_A 71 -SPLLFKFRAKFY 82 (294)
T ss_dssp -SSEEEEEEESSC
T ss_pred -CCEEEEEEEEEE
Confidence 224566555543
No 147
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=43.50 E-value=1.1e+02 Score=23.53 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=50.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEe--cC--eecCCCCcccccCCCCCCC
Q 032861 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SG--KILENNKTVGQCKIPYGEV 80 (132)
Q Consensus 5 ~~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy--~G--k~LeD~~tLs~~~I~~gd~ 80 (132)
..+.+++.+.|| .+ .+.+++++|+.+|=+.|.+.+. +. ..+.-=|.| .| ..|+.++.|.+.....+
T Consensus 21 ~~~~~~V~lldg-~~-~~~v~~~t~~~el~~~v~~~l~-----L~-e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~-- 90 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EM-EFNCEMKWKGKDLFDLVCRTLG-----LR-ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKE-- 90 (314)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHT-----CC-CGGGEEEEEEETTEEEECCTTSBGGGSSCCCS--
T ss_pred CeeEEEEEeCCc-eE-EEEeCCCCcHHHHHHHHHHHhC-----CC-CCccceEEEEeCCcCeeCCCccCHHHcCCCCC--
Confidence 458899999999 65 5999999999999999998822 10 033334433 23 25777788877654433
Q ss_pred CCceEEEEEEecC
Q 032861 81 PGGVIIMHVVVQP 93 (132)
Q Consensus 81 ~~~~~tmHlv~r~ 93 (132)
.+..+++-++.
T Consensus 91 --~~~~l~fr~kf 101 (314)
T 1h4r_A 91 --EPVTFHFLAKF 101 (314)
T ss_dssp --SSEEEEEEESS
T ss_pred --CCEEEEEEEEE
Confidence 23456665553
No 148
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=42.77 E-value=22 Score=25.10 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=25.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEec
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~ 60 (132)
++.|-.++|+.+||+.|++.+ ++| +++|||-.-
T Consensus 59 ~~rv~k~~~~~~~~~~va~~l-----g~~--~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTM-----GFP--QDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHH-----CCC--GGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHHh-----CCC--cccEEEEEe
Confidence 456677999999999999973 233 999999543
No 149
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=42.10 E-value=25 Score=33.33 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=44.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCcccCCCCCcceEEEecCe-----ec-CCCCcccccCCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQCKIP 76 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~---~p~d~e~~P~~~~~qrLIy~Gk-----~L-eD~~tLs~~~I~ 76 (132)
.|.|.|.+++|. +.+++++.++|+.++|+.++.+ .|-...- .++++-.+.|-.+ .+ ++.+.|-++.+-
T Consensus 42 ~i~vd~LLPnGi-~i~l~v~~~~tl~~iK~~lw~~a~~~pl~~~l--~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~ 118 (1091)
T 3hhm_A 42 RILVECLLPNGM-IVTLECLREATLITIKHELFKEARKYPLHQLL--QDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 118 (1091)
T ss_dssp -EEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHHGGGSTTGGGC--CCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBS
T ss_pred ceEEEEEcCCCe-EEEEEecCCCcHHHHHHHHHHHHHhCcchhhc--CChhHeEEEEEccCceEeeeecCceeeEEeecc
Confidence 399999999995 4579999999999999999988 3311111 2255555554433 23 455566666544
No 150
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=41.63 E-value=75 Score=21.10 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=27.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p 42 (132)
++.||.... | ++..+.++++.+-.+|.++|.+.++
T Consensus 6 ~vkvK~~~~-g-di~~~~v~~~i~~~~L~~kv~~~~~ 40 (89)
T 1vd2_A 6 QVRVKAYYR-G-DIMITHFEPSISFEGLCNEVRDMCS 40 (89)
T ss_dssp CEEEEEESS-S-CEEEEEECTTCCHHHHHHHHHHHTT
T ss_pred eEEEEEEeC-C-eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444444 4 6778999999999999999999965
No 151
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=41.48 E-value=80 Score=21.33 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=43.0
Q ss_pred EEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEecCCCc
Q 032861 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (132)
Q Consensus 22 ~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd~~~~~~tmHlv~r~~~~ 96 (132)
..++=...+..||+.++.++. .+-+.=.+...+.+|+++++|-+-+++-. +.+.+.+-+....+
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~-------i~L~~y~f~LQd~~L~~~k~LvdQcVqge----GlVQinvqik~~~~ 70 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQ-------CSLDAHEICLQDIQLDPDRSLFDQGVKTD----GTVQLSVQVISYQG 70 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHC-------SCCSSCEEEETTEECCTTSBTTTSSCCCC----SEEEEEEEEECCTT
T ss_pred hhccccCcHHHHHHHHHHHhc-------CCcccCeEEeeccccCCCccHHHhhcccc----cEEEEEEEEEecCC
Confidence 345556678899999999843 11555556667788999999999888844 34555554444433
No 152
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=40.72 E-value=62 Score=19.84 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=35.6
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 9 l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
+++++...-.-..+++ ...||++|.+.+... | +... ......+.-+|+...+. +..+++||
T Consensus 3 v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~-~-~l~~---~l~~~~vavN~~~v~~~----~~~l~~gD 63 (74)
T 3rpf_C 3 VEVRFFGPIKEENFFI-KANDLKELRAILQEK-E-GLKE---WLGVCAIALNDHLIDNL----NTPLKDGD 63 (74)
T ss_dssp EEEEECTTCCCCCEEE-ECSSHHHHHHHHHTC-T-TTTT---TTTTCEEEESSSEECCT----TCCCCTTC
T ss_pred EEEEEEeecceeEEee-CCCcHHHHHHHHHHC-c-CHHH---HhhccEEEECCEEcCCC----CcCCCCCC
Confidence 4455544321134667 567999999999875 3 1111 02456677778775432 34578884
No 153
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=39.89 E-value=64 Score=19.74 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=32.0
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.++++...||.+|.+.+. ++ +....+..+|.++..+. .+++||
T Consensus 17 ~~~~~~~~tv~~Ll~~l~--~~---------~~~v~vavN~~~v~~~~-----~L~~gD 59 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGELE--IP---------IETVVVKKNGQIVIDEE-----EIFDGD 59 (70)
T ss_dssp EEEESSCCBHHHHHHHTT--CC---------TTTEEEEETTEECCTTS-----BCCTTC
T ss_pred eEECCCCCcHHHHHHHhC--CC---------CCCEEEEECCEECCCcc-----cCCCCC
Confidence 367888899999988774 22 55667889999996554 477775
No 154
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=39.34 E-value=22 Score=30.50 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.7
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEE
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLI 58 (132)
.+.+-.++|+.+||+.|++.+. +| +++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg-----~~--~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMG-----FP--QDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT-----SC--GGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhC-----cC--cccEEEE
Confidence 4667789999999999999832 33 8999994
No 155
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=36.71 E-value=91 Score=21.25 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=25.3
Q ss_pred eEEEEEEeCCC------C-eeeeEEeC---CcchHHHHHHHHHhhCCCC
Q 032861 6 LIDIKFRLYDG------S-DIGPFRYS---SASTVDMLKQRIVSDWPKG 44 (132)
Q Consensus 6 ~v~l~~rl~~G------~-~i~~~~v~---~s~TV~~LK~~I~~~~p~d 44 (132)
...|++++..+ . ....++++ ...||++|-+.+.+.+|..
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~ 59 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKE 59 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCS
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccch
Confidence 35566665443 2 12246666 3369999999999998744
No 156
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=35.46 E-value=15 Score=23.22 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=30.3
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.+++++..||.+|.+.+. ++ .....+..+|++...+ ..+++||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~--~~---------~~~v~VavNg~~v~~~-----~~L~dGD 66 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG--FN---------TESAIAKVNGKVVLED-----DEVKDGD 66 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT--CS---------SCSSCEEETTEEECSS-----SCCCSSC
T ss_pred EEECCCCCcHHHHHHHhC--CC---------CcCEEEEECCEECCCC-----CCcCCCC
Confidence 457777889999877654 33 5556778899988654 4577775
No 157
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=34.19 E-value=51 Score=22.52 Aligned_cols=25 Identities=24% Similarity=0.067 Sum_probs=22.1
Q ss_pred CeeeeEEeCCcchHHHHHHHHHhhC
Q 032861 17 SDIGPFRYSSASTVDMLKQRIVSDW 41 (132)
Q Consensus 17 ~~i~~~~v~~s~TV~~LK~~I~~~~ 41 (132)
.++..+-++++.+-.+|..+|.+++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl 46 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKI 46 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHH
Confidence 3677899999999999999999983
No 158
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=34.06 E-value=43 Score=29.68 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=40.6
Q ss_pred eCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCe-ecCCCCcccccCCC
Q 032861 13 LYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-ILENNKTVGQCKIP 76 (132)
Q Consensus 13 l~~G~~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk-~LeD~~tLs~~~I~ 76 (132)
+..+ ....+.+.+..|+.++++.|+++ +++| ++.|.||+.+. .|+.....++|.+.
T Consensus 318 ~~~~-~~~~~~i~~~~tl~~l~~~i~~~-----T~i~--~~~q~~~~~~~~~~~p~~~~~~~~~~ 374 (676)
T 3qa8_A 318 MVSG-RVHTYPVTENENLQNLKSWLQQD-----TGIP--EEEQELLQASGLALNSAQPLTQYVID 374 (676)
T ss_dssp SSSS-CCCEEECCTTCCHHHHHHHHHTT-----SCCC--STTCEEESSSSCCCCTTSCGGGSCCC
T ss_pred cccc-ccceeecCCCccHHHHHHHHHHH-----hCCC--HHHHHHHhccCCCCCCCcchhhheec
Confidence 3444 44467889999999999999988 3444 88999888665 55666677777543
No 159
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=32.40 E-value=67 Score=25.08 Aligned_cols=34 Identities=24% Similarity=0.114 Sum_probs=28.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~ 40 (132)
..-|+|-+.+|+.. .+.|++++|+++|-+.+.++
T Consensus 8 ~~ivkv~~~d~ss~-~l~V~~~mta~ev~~~l~~k 41 (256)
T 3hk0_A 8 KQDVKVFSEDGTSK-VVEILADMTARDLCQLLVYK 41 (256)
T ss_dssp CEEEEEEETTSCEE-EEEECTTCBHHHHHHHHHCC
T ss_pred ceEEEEEecCCcEE-EEEECCCCCHHHHHHHHHHh
Confidence 45688889999554 78999999999999998877
No 160
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=31.84 E-value=74 Score=21.30 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=40.3
Q ss_pred cceEEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCe-ec-CCCCcccc
Q 032861 4 EELIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-IL-ENNKTVGQ 72 (132)
Q Consensus 4 ~~~v~l~~rl~~G~---~i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk-~L-eD~~tLs~ 72 (132)
..+|.|+|+-.++- +-..+.|+.+.|++++-..|..++. .+.+=| |-+. .+ .-++++++
T Consensus 11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~---------l~alFl-yvn~~~~Ps~d~~m~~ 74 (96)
T 1wz3_A 11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---------SDSLFV-YVNSAFSPNPDESVID 74 (96)
T ss_dssp -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---------CSSCEE-EEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcC---------CceEEE-EECCcccCChhhHHHH
Confidence 34899999987551 1123789999999999999998854 334444 5555 55 45667765
No 161
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.57 E-value=73 Score=25.28 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=29.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~ 40 (132)
++-++|-+.+|+.. .+.|++++|+++|-+.+..+
T Consensus 31 k~ivkv~~~D~ss~-~l~V~~~~TA~dv~~~L~~k 64 (281)
T 4gmv_A 31 KLVIRVHMSDDSSK-TMMVDERQTVRQVLDNLMDK 64 (281)
T ss_dssp EEEEEEEETTSCEE-EEEEETTCBHHHHHHHHHHH
T ss_pred cEEEEEEecCCCEE-EEEECCCCcHHHHHHHHHHh
Confidence 46789999999654 79999999999999888877
No 162
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=29.51 E-value=71 Score=26.93 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=30.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~ 41 (132)
.+.+++.+.+|+. ..+.+++++|+++|-+.|.+++
T Consensus 216 ~~~~~V~l~dg~~-~~~~v~~~tt~~el~~~v~~~l 250 (555)
T 3au4_A 216 EMTSTVYCHGGGS-CKITINSHTTAGEVVEKLIRGL 250 (555)
T ss_dssp CEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHHHT
T ss_pred CcceEEEecCCCe-EEEEeCCCCcHHHHHHHHHHHc
Confidence 4788999999965 4689999999999999999984
No 163
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=28.29 E-value=1.1e+02 Score=19.15 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=25.3
Q ss_pred CCCcceEEEEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhh
Q 032861 1 MPDEELIDIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSD 40 (132)
Q Consensus 1 ~~~~~~v~l~~rl~~G~~i~~~~v~~-s~TV~~LK~~I~~~ 40 (132)
|++.+...+++.+.+|.. .++.. ..|+.++-..|...
T Consensus 4 ~~~~~~~~i~I~lpdG~~---~~~~~~~~T~~dia~~i~~~ 41 (88)
T 1wwt_A 4 GSSGDSKPIKVTLPDGKQ---VDAESWKTTPYQIACGISQG 41 (88)
T ss_dssp CCCCSCCEEEEECTTSCE---EEEETTTCCHHHHHHHSSTT
T ss_pred cccCCCCCEEEEECCCCE---EEcccCCCCHHHHHHHhhhc
Confidence 344556678888899943 35555 68999987777544
No 164
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=27.43 E-value=1.1e+02 Score=18.61 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=30.2
Q ss_pred CCcchHHHHHHHHHhhCCCCcc-cCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 25 SSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 25 ~~s~TV~~LK~~I~~~~p~d~e-~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.+..||.+|.+.+...+| ++. ..+ .....+..+|+.... +..+++||
T Consensus 23 ~~~~tv~~ll~~L~~~~p-~~~~~l~--~~~~~v~vN~~~v~~-----~~~l~~gD 70 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSD-RWALALE--DGKLLAAVNQTLVSF-----DHPLTDGD 70 (81)
T ss_dssp SCCSBHHHHHHHHHTTCH-HHHHHHC--CTTCEEEETTEECCT-----TCBCCTTC
T ss_pred CCCCCHHHHHHHHHHHCh-hHHHHhc--CCCEEEEECCEECCC-----CCCCCCCC
Confidence 467799999999987754 111 111 234567788887753 34577784
No 165
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=26.86 E-value=91 Score=19.90 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=23.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 032861 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~ 40 (132)
+|.+.+++| + .++++...|+.++-..|...
T Consensus 7 ~i~v~tP~G-~--~~~lp~GaT~~D~A~~Ih~~ 36 (78)
T 3hvz_A 7 EVFVFTPKG-D--VISLPIGSTVIDFAYAIHSA 36 (78)
T ss_dssp EEEEECTTS-C--EEEEETTCBHHHHHHHHCHH
T ss_pred eEEEECCCC-C--EEEecCCCCHHHHHHHhhhh
Confidence 466777999 3 36899999999998777654
No 166
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=24.77 E-value=78 Score=18.93 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=32.1
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
++++....||.+|.+.+.. + .....+..+|+++..+. ..+..+++||
T Consensus 9 ~~~~~~~~tv~~ll~~l~~--~---------~~~v~vavN~~~v~~~~-~~~~~L~~gD 55 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQLDQ--R---------QAGAALAINQQIVPREQ-WAQHIVQDGD 55 (66)
T ss_dssp EECCCTTCCHHHHHHHHTC--C---------CSSEEEEETTEEECHHH-HTTCCCCTTE
T ss_pred EEEcCCCCcHHHHHHHcCC--C---------CCCEEEEECCEECCchh-cCCcCCCCCC
Confidence 4577788999999888742 2 56677888888875321 2234578884
No 167
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=24.29 E-value=1.6e+02 Score=19.41 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=39.3
Q ss_pred cceEEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCcccCCCCCcceEEEe-cCeec-CCCCcccc
Q 032861 4 EELIDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-SGKIL-ENNKTVGQ 72 (132)
Q Consensus 4 ~~~v~l~~rl~~G~~---i~~~~v~~s~TV~~LK~~I~~~~p~d~e~~P~~~~~qrLIy-~Gk~L-eD~~tLs~ 72 (132)
..+|.|+|+-.+.-- -..+.|+.+.||+++...|..++. ..+++--.+| +...+ .-++++++
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~-------l~~~~alFlyVnn~~~P~~d~~~~~ 69 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLK-------LVASEQLFIYVNQSFAPSPDQEVGT 69 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTT-------CCSSSCCEEEETTTBCCCTTCBHHH
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhC-------CCCCCeEEEEECCccCCChhhHHHH
Confidence 467888888765521 113788999999999999999843 1144433444 44455 44667665
No 168
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.72 E-value=1e+02 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=30.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~~ 41 (132)
.+.+++.+.+|+. ..+.+++++|+.+|=+.|..++
T Consensus 263 ~i~~~V~llDgt~-~~~~vds~Tt~~ell~~V~~~L 297 (655)
T 3pvl_A 263 PIMLPVTFMDGTT-KTLLTDSATTARELCNALADKI 297 (655)
T ss_dssp CEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHHHT
T ss_pred ceEEEEEecCCce-EEEEEccCCcHHHHHHHHHHHc
Confidence 5789999999954 5799999999999999999984
No 169
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=22.28 E-value=1.5e+02 Score=18.31 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=33.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCcccC-------CCCCcceEEEecCeecCCCCcccccCCCCCC
Q 032861 21 PFRYSSASTVDMLKQRIVSDWPKGKTIV-------PKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (132)
Q Consensus 21 ~~~v~~s~TV~~LK~~I~~~~p~d~e~~-------P~~~~~qrLIy~Gk~LeD~~tLs~~~I~~gd 79 (132)
.++++...||.+|.+.+..++| +.... . .....+..+|+......- .+..+++||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p-~~~~~~l~~~~g~--~~~v~v~vN~~~v~~~~~-~~~~l~~gD 79 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYG-SEFTKQMYDGNNL--FKNVIILVNGNNITSMKG-LDTEIKDDD 79 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSC-HHHHHHHCCSSCS--TTTCEEEESSSBGGGTCS-SSCBCCTTC
T ss_pred EEEcCCCCcHHHHHHHHHHHCc-chhhhccccccCc--CcceEEEECCEEccccCC-CCcCCCCCC
Confidence 3567767899999999988754 11000 0 135667788887752221 134578884
No 170
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=20.96 E-value=1.3e+02 Score=22.36 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=28.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 032861 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (132)
Q Consensus 6 ~v~l~~rl~~G~~i~~~~v~~s~TV~~LK~~I~~~ 40 (132)
.+.|++-..||. ...+.|++++|+.+|-+.+.++
T Consensus 34 k~~v~v~~~d~~-~k~i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 34 KLVVKVHMDDSS-TKSLMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp EEEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHH
T ss_pred ceEEEEEcCCCc-eEEEEeCCCCcHHHHHHHHHHH
Confidence 356777778884 4578999999999999998887
No 171
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=20.46 E-value=82 Score=22.92 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=33.9
Q ss_pred CcchHHHHHHHHHhhCCCC--cc------cCCCC-------CcceEEEecCeec-CCCCcccccCCCCCCC
Q 032861 26 SASTVDMLKQRIVSDWPKG--KT------IVPKA-------VTEIKLISSGKIL-ENNKTVGQCKIPYGEV 80 (132)
Q Consensus 26 ~s~TV~~LK~~I~~~~p~d--~e------~~P~~-------~~~qrLIy~Gk~L-eD~~tLs~~~I~~gd~ 80 (132)
.++|..+|-..|.+..|.- .. .+-++ ..++=-++.|+-- +|++||.+++..-||+
T Consensus 62 ~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred CCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 6789999999998886521 00 00000 1112224445543 7899999999999974
Done!