BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032862
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L VVD I+ YDSM + ++ R LL + ++ E + ++
Sbjct: 115 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 169
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
SK + ++I Q +G DCG+F +Y + + +N + QQ H+ FR+ +
Sbjct: 170 SK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 216
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L VVD I+ YDSM + ++ R LL + ++ E + ++
Sbjct: 119 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 173
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
SK + ++I Q +G DCG+F +Y + + +N + QQ H+ FR+ +
Sbjct: 174 SK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 220
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L VVD I+ YDSM + ++ R LL + ++ E + ++
Sbjct: 127 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 181
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
SK + ++I Q +G DCG+F +Y + + +N + QQ H+ FR+ +
Sbjct: 182 SK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 228
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L VVD I+ YDSM + ++ R LL + ++ +
Sbjct: 115 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKRKEFDTNGWQLFSKK 172
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
S+IP Q +G DCG+F +Y + + +N + QQ H+ FR+ +
Sbjct: 173 SQIP----------QQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 215
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L VVD I+ YDSM + ++ R LL + ++ E + ++
Sbjct: 115 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 169
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
SK + ++I Q +G D G+F +Y + + +N + QQ H+ FR+ +
Sbjct: 170 SK------KSQEIPQQMNGSDAGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 216
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L VVD I+ YDSM + ++ R LL + ++ E + ++
Sbjct: 94 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 148
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQAL 118
SK + ++I Q +G D G+F +Y + + +N + QQ H+ FR+ +
Sbjct: 149 SK------KSQEIPQQMNGSDSGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRM 195
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 30.0 bits (66), Expect = 0.43, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 88 FLLRYLEVLAHG--LDVNSYCQQDHVTQFRQALAVKLFGHRSWKKTL 132
F L EVLA+G LD+ Y D Q Q LA + FG+++ K L
Sbjct: 496 FRLEQREVLANGEGLDMAQYPMDDEARQIFQDLAEEEFGYKTLVKRL 542
>pdb|4E8B|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsme From
E.Coli
Length = 251
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 56 HPDCSEVISKIPWPIVRVRDILQPKSG 82
HP S I+ +P P+ RVR ++ P+ G
Sbjct: 172 HPRASNSINTLPLPVERVRLLIGPEGG 198
>pdb|2BSR|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
Immunodominant Viral Peptides Complexed To Hla-B2705
pdb|2BSS|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
Immunodominant Viral Peptides Complexed To Hla-B2705
Length = 276
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 55 THPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLE 94
T D + I++ W RV + L+ G+C +L RYLE
Sbjct: 134 TAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLE 173
>pdb|1K5N|A Chain A, Hla-B2709 Bound To Nona-Peptide M9
pdb|1JGD|A Chain A, Hla-B2709 Bound To Deca-Peptide S10r
pdb|1OF2|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The
Vasoactive Intestinal Peptide Type 1 Receptor (Vipr)
Peptide (Residues 400-408)
pdb|1UXW|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The Latent
Membrane Protein 2 Peptide (Lmp2) Of Epstein-Barr Virus
pdb|1W0W|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The
Self-Peptide Tis From Egf-Response Factor 1
pdb|3B3I|A Chain A, Citrullination-dependent Differential Presentation Of A
Self-peptide By Hla-b27 Subtypes
pdb|3BP7|A Chain A, The High Resolution Crystal Structure Of Hla-B2709 In
Complex With A Cathepsin A Signal Sequence Peptide,
Pcata
pdb|3CZF|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The Glucagon
Receptor (Gr) Peptide (Residues 412-420)
pdb|3HCV|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The Double
Citrullinated Vasoactive Intestinal Peptide Type 1
Receptor (Vipr) Peptide (Residues 400-408)
Length = 276
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 55 THPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLE 94
T D + I++ W RV + L+ G+C +L RYLE
Sbjct: 134 TAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLE 173
>pdb|1HSA|A Chain A, The Three-Dimensional Structure Of Hla-B27 At 2.1
Angstroms Resolution Suggests A General Mechanism For
Tight Peptide Binding To Mhc
pdb|1HSA|D Chain D, The Three-Dimensional Structure Of Hla-B27 At 2.1
Angstroms Resolution Suggests A General Mechanism For
Tight Peptide Binding To Mhc
pdb|1JGE|A Chain A, Hla-B2705 Bound To Nona-Peptide M9
pdb|1OGT|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The
Vasoactive Intestinal Peptide Type 1 Receptor (Vipr)
Peptide (Residues 400-408)
pdb|1UXS|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The Latent
Membrane Protein 2 Peptide (Lmp2)of Epstein-Barr Virus
pdb|1W0V|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The
Self-Peptide Tis From Egf-Response Factor 1
pdb|2BST|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
Immunodominant Viral Peptides Complexed To Hla-b2705
pdb|2A83|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The Glucagon
Receptor (Gr) Peptide (Residues 412-420)
pdb|3B6S|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The
Citrullinated Vasoactive Intestinal Peptide Type 1
Receptor (Vipr) Peptide (Residues 400-408)
pdb|3BP4|A Chain A, The High Resolution Crystal Structure Of Hla-B2705 In
Complex With A Cathepsin A Signal Sequence Peptide Pcata
pdb|3DTX|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The Double
Citrullinated Vasoactive Intestinal Peptide Type 1
Receptor (Vipr) Peptide (Residues 400-408)
pdb|3LV3|A Chain A, Crystal Structure Of Hla-B2705 Complexed With A Peptide
Derived From The Human Voltage-Dependent Calcium Channel
Alpha1 Subunit (Residues 513-521)
Length = 276
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 55 THPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLE 94
T D + I++ W RV + L+ G+C +L RYLE
Sbjct: 134 TAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLE 173
>pdb|3D18|A Chain A, Crystal Structure Of Hla-B2709 Complexed With A Variant Of
The Latent Membrane Protein 2 Peptide (Lmp2(L)) Of
Epstein-Barr Virus
Length = 276
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 55 THPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLE 94
T D + I++ W RV + L+ G+C +L RYLE
Sbjct: 134 TAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLE 173
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 26 LTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWP 69
+T D +LV+ + PV + I K Y HPDC + + WP
Sbjct: 115 ITIDGILVK-VTPVKERI----YKATYKHIHPDC---MQEFEWP 150
>pdb|4IM7|A Chain A, Crystal Structure Of Fructuronate Reductase (ydfi) From E.
Coli Cft073 (efi Target Efi-506389) Complexed With Nadh
And D-mannonate
Length = 506
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 29 DSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVF 88
++VL P ++ L + + Y + P +++ P + V++ QPK+ GV
Sbjct: 126 ETVLAAMCEPQIAIVSLTITEKGYFHS-PATGQLMLDHPMVVADVQNPHQPKTA--TGVI 182
Query: 89 LLRYLEVLAHGLDV-----------NSYCQQDHVTQFRQALAVKL 122
+ A GL N + +D VT + QA+ VKL
Sbjct: 183 VEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAIDVKL 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,073,610
Number of Sequences: 62578
Number of extensions: 146713
Number of successful extensions: 536
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 22
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)