BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032862
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L V++ K+ DS L V MI L K E + + I
Sbjct: 380 HWTLAVINNRESKLLYLDS-------------LNGVDPMILNALAKYMGDEANEKSGKKI 426
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYC-QQDHVTQFRQALAVKL 122
W + V D+ Q K+G DCG+F+L+Y++ + GL + C Q+H+ FR A ++
Sbjct: 427 DANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGL---CFSQEHMPYFRLRTAKEI 483
Query: 123 FGHRS 127
R+
Sbjct: 484 LRLRA 488
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW LGV++ K DS+ V I + K E + I
Sbjct: 231 HWTLGVINNRERKFVYLDSL------------FTGVGHTILNAMAKYLVDEVKQKSQKNI 278
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQD 109
W + V + Q ++G DCG+F+L+Y++ + GL + + Q+D
Sbjct: 279 DVSSWGMEYVEERPQQQNGYDCGMFMLKYIDFYSRGLSL-QFSQKD 323
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 1 MNDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYH--ETHPD 58
MN HW L V++I K DS P +L +A + + D
Sbjct: 390 MNIHWTLAVINIKDQKFQYLDSF----------------KGREPKILDALARYFVDEVRD 433
Query: 59 CSEVISKIP-WPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYC-QQDHVTQFRQ 116
SEV + W V+D+ ++G DCG+F+++Y++ + GLD+ C Q+ + FR
Sbjct: 434 KSEVDLDVSRWRQEFVQDLPMQRNGFDCGMFMVKYIDFYSRGLDL---CFTQEQMPYFRA 490
Query: 117 ALAVKLF 123
A ++
Sbjct: 491 RTAKEIL 497
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L VVD I+ YDSM + ++ R LL + ++ E + ++
Sbjct: 534 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 588
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLF 123
SK + ++I Q +G DCG+F +Y + + +N + QQ H+ FR+ + ++
Sbjct: 589 SK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRMVWEIL 640
Query: 124 GHR 126
HR
Sbjct: 641 -HR 642
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L VVD I+ YDSM + ++ R LL + ++ E + ++
Sbjct: 533 HWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFDTNGWQLF 587
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLF 123
SK + ++I Q +G DCG+F +Y + + +N + QQ H+ FR+ + ++
Sbjct: 588 SK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRMVWEIL 639
Query: 124 GHR 126
HR
Sbjct: 640 -HR 641
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW L VVD I+ YDSM + ++ + +LQ + E
Sbjct: 529 HWCLAVVDFRRKSITYYDSMGGINNEACRI------------LLQYLKQESVDKKRKEFD 576
Query: 64 SKIPWPIV--RVRDILQPKSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVK 121
+ W + + ++I Q +G DCG+F +Y + + +N + QQ H+ FR+ + +
Sbjct: 577 TN-GWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRKRMVWE 633
Query: 122 LFGHR 126
+ HR
Sbjct: 634 IL-HR 637
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 4 HWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVI 63
HW + V+D+ KI YDS+ D ++ ++ L + L +K A + +
Sbjct: 585 HWCMAVIDMGEKKIEFYDSLYD--GNTAVLPALRGYLEAESLDKKKTAMNFSG------- 635
Query: 64 SKIPWPIVRVRDILQPKSGGDCGVFLLRYLE 94
W I ++ DI + ++G DCGVF ++ E
Sbjct: 636 ----WTIQQMTDIPRQQNGSDCGVFSCQFGE 662
>sp|B0BAX8|CDUB2_CHLTB Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar L2b (strain UCH-1/proctitis) GN=cdu2 PE=3 SV=1
Length = 339
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSE 61
N HWVL +VDI ++ +DS+ D +R+ L + + + L I E D +
Sbjct: 201 NSHWVLVIVDIEYRCVTFFDSLCDYVASPQQMREQL---EGLAVSLGAIYPKEGGADSDQ 257
Query: 62 VISKIPWPI-----VRVRDILQPKSGGDCGVFLLRYLE 94
P+ + V+V+ + G C FL YLE
Sbjct: 258 EELLSPFQVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|B0B999|CDUB2_CHLT2 Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar L2 (strain 434/Bu / ATCC VR-902B) GN=cdu2 PE=3
SV=1
Length = 339
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSE 61
N HWVL +VDI ++ +DS+ D +R+ L + + + L I E D +
Sbjct: 201 NSHWVLVIVDIEYRCVTFFDSLCDYVASPQQMREQL---EGLAVSLGAIYPKEGGADSDQ 257
Query: 62 VISKIPWPI-----VRVRDILQPKSGGDCGVFLLRYLE 94
P+ + V+V+ + G C FL YLE
Sbjct: 258 EELLSPFQVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 68 WPIVRVRDILQPKSGGDCGVFLLRYLEVLA 97
W + I Q K+ DCGVF+L+Y + LA
Sbjct: 696 WQTAVTKCIPQQKNDSDCGVFVLQYCKCLA 725
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 68 WPIVRVRDILQPKSGGDCGVFLLRYLEVLA 97
W + I Q K+ DCGVF+L+Y + LA
Sbjct: 696 WQTAVTKCIPQQKNDSDCGVFVLQYCKCLA 725
>sp|D3UTF3|CDUB2_CHLTS Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar E (strain Sweden2) GN=cdu2 PE=3 SV=1
Length = 339
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVR-QLLPVADMIPLVLQKIAYHETHPDCS 60
N HWVL +VDI ++ +DS D +R QL +A + + K ++ D
Sbjct: 201 NSHWVLVIVDIEHRCVTFFDSFYDYIASPQQMREQLEGLAASLGAIYPKEGGADS--DQE 258
Query: 61 EVISKIPWPIVRVRDILQPKSGGD------CGVFLLRYLE 94
E++S VR+ ++ +S G+ C FL YLE
Sbjct: 259 ELLSPF---QVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|O84875|CDUB2_CHLTR Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=cdu2 PE=1 SV=1
Length = 339
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVR-QLLPVADMIPLVLQKIAYHETHPDCS 60
N HWVL +VDI ++ +DS D +R QL +A + + K ++ D
Sbjct: 201 NSHWVLVIVDIEHRCVTFFDSFYDYIASPQQMREQLEGLAASLGAIYPKEGGADS--DQE 258
Query: 61 EVISKIPWPIVRVRDILQPKSGGD------CGVFLLRYLE 94
E++S VR+ ++ +S G+ C FL YLE
Sbjct: 259 ELLSPF---QVRIGSTVKVQSPGEFTCGAWCCQFLAWYLE 295
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 68 WPIVRVRDILQPKSGGDCGVFLLRYLEVLA 97
W + I Q K+ DCGVF+L+Y + LA
Sbjct: 690 WQTAVTKCIPQQKNDSDCGVFVLQYCKCLA 719
>sp|P07065|TOP5_BPT4 DNA topoisomerase medium subunit OS=Enterobacteria phage T4 GN=52
PE=3 SV=2
Length = 442
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 15 GKISIYDSMIDLTKDSVLVRQ 35
GK+ +YD+++DL KD V VR+
Sbjct: 312 GKLQVYDNVVDLIKDFVEVRK 332
>sp|Q8XXX9|TRPF_RALSO N-(5'-phosphoribosyl)anthranilate isomerase OS=Ralstonia
solanacearum (strain GMI1000) GN=trpF PE=3 SV=1
Length = 230
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 39 VADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEVLAH 98
V D +PL L + ET C+E+ K+ P +R L+ + G D F R+ A
Sbjct: 75 VLDQVPLTLLQFHGDETPEQCAEIAGKVGLPWLRA---LRVQPGTDLVEFADRF--AAAQ 129
Query: 99 GLDVNSYCQ 107
GL ++++ +
Sbjct: 130 GLLLDAFVE 138
>sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp.
japonica GN=Os03g0108600 PE=2 SV=2
Length = 641
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 6 VLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPL-VLQKIAYHETHPDCSEVIS 64
VL VDIL G+ S + L + L Q L V +PL + K+ ET PDC ++
Sbjct: 397 VLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVV--ETFPDCELIMG 454
Query: 65 K-IPWPIVRVRDILQPKSGGD 84
+ R+ +IL SG D
Sbjct: 455 PGVHRTSSRLEEILVDCSGDD 475
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,286,176
Number of Sequences: 539616
Number of extensions: 1920329
Number of successful extensions: 5064
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5046
Number of HSP's gapped (non-prelim): 21
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)