Query 032862
Match_columns 132
No_of_seqs 152 out of 904
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 2.7E-30 9.4E-35 186.2 13.3 112 2-128 113-226 (226)
2 2xph_A Sentrin-specific protea 100.0 4.9E-30 1.7E-34 186.2 12.3 112 2-128 125-238 (238)
3 1euv_A ULP1 protease; SUMO hyd 100.0 2.4E-27 8.3E-32 170.3 14.1 109 2-127 112-220 (221)
4 2bkr_A Sentrin-specific protea 99.9 1.3E-24 4.5E-29 155.1 7.7 103 2-125 100-209 (212)
5 2oix_A Xanthomonas outer prote 99.9 5.4E-23 1.9E-27 144.2 6.4 100 2-125 73-181 (186)
6 3eay_A Sentrin-specific protea 99.8 7.5E-21 2.5E-25 142.6 11.7 97 16-124 207-312 (323)
7 4ekf_A Adenain; alpha and beta 98.1 2.2E-05 7.4E-10 54.2 9.1 83 2-98 52-135 (204)
8 3k8u_A Putative ABC transporte 59.8 14 0.00048 23.7 4.3 25 77-102 9-33 (156)
9 1p22_C Beta-catenin, Pro2286; 35.6 7.7 0.00026 17.7 -0.0 10 79-88 8-18 (26)
10 3zua_A CLD, alpha-hemolysin tr 31.9 63 0.0022 20.1 4.0 24 2-25 86-109 (142)
11 3rnv_A HC-Pro, helper componen 29.7 52 0.0018 21.8 3.2 21 8-28 107-127 (158)
12 3h3g_B Parathyroid hormone-rel 27.1 49 0.0017 14.7 1.9 15 110-124 3-18 (24)
13 1g2y_A Hepatocyte nuclear fact 24.1 37 0.0013 16.1 1.3 23 110-132 4-26 (32)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=99.97 E-value=2.7e-30 Score=186.25 Aligned_cols=112 Identities=18% Similarity=0.375 Sum_probs=90.0
Q ss_pred CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEe--eccCCCC
Q 032862 2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVR--VRDILQP 79 (132)
Q Consensus 2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~P~Q 79 (132)
++||+|++||+++++|.+|||+++.. ... .+.+.+++. .+. .++.+..++. ++|++.. ..++|||
T Consensus 113 ~~HW~l~vi~~~~~~i~~~DSl~~~~-~~~----~~~l~~~l~----~e~-~~k~~~~~~~---~~w~~~~~~~~~~PqQ 179 (226)
T 1th0_A 113 KVHWSLVVIDLRKKCLKYLDSMGQKG-HRI----CEILLQYLQ----DES-KTKRNSDLNL---LEWTHHSMKPHEIPQQ 179 (226)
T ss_dssp TTEEEEEEEETTTTEEEEECTTCCCC-HHH----HHHHHHHHH----HHH-HHHTSCCCCG---GGCEEEECCTTTSCCC
T ss_pred CcEEEEEEEEcCCCceEEEcCCCCCc-hHH----HHHHHHHHH----HHH-HHhcCCCCCc---ccceeccccCCCCCCC
Confidence 68999999999999999999999864 322 333444443 332 3334444433 7898753 4689999
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhcccc
Q 032862 80 KSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSW 128 (132)
Q Consensus 80 ~n~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~~ 128 (132)
.||+|||||||+||++++.|.++ +|+++ +|+.+|++|+.||+.++||
T Consensus 180 ~Ng~DCGvfvl~~~~~~~~~~~~-~f~q~-dm~~~R~~~~~ei~~~~l~ 226 (226)
T 1th0_A 180 LNGSDCGMFTCKYADYISRDKPI-TFTQH-QMPLFRKKMVWEILHQQLL 226 (226)
T ss_dssp CSSSCHHHHHHHHHHHHTTTCCC-CCCGG-GHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCC-ccChh-hHHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999887 89999 9999999999999999986
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=99.97 E-value=4.9e-30 Score=186.22 Aligned_cols=112 Identities=22% Similarity=0.478 Sum_probs=89.9
Q ss_pred CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEE--eeccCCCC
Q 032862 2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIV--RVRDILQP 79 (132)
Q Consensus 2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~Q 79 (132)
|+||+|++||+++++|.+|||+++.. ... ++.+.+++. .+. .++.+..++ .++|++. ..+++|||
T Consensus 125 ~~HW~L~vi~~~~~~i~~~DSl~~~~-~~~----~~~l~~~L~----~e~-~~k~~~~~~---~~~w~~~~~~~~~~PqQ 191 (238)
T 2xph_A 125 GVHWCLAVVDFRKKNITYYDSMGGIN-NEA----CRILLQYLK----QES-IDKKRKEFD---TNGWQLFSKKSQEIPQQ 191 (238)
T ss_dssp TTEEEEEEEETTTTEEEEECTTCCCC-HHH----HHHHHHHHH----HHH-HHHHCSCCC---CTTCEEEECCSSSSCCC
T ss_pred CCceEEEEEEcccceEEEeecccCCC-HHH----HHHHHHHHH----HHH-HHhcCCCcC---cccceecccCCCCCCCC
Confidence 68999999999999999999999864 323 333444443 222 333334443 3889875 25689999
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhcccc
Q 032862 80 KSGGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRSW 128 (132)
Q Consensus 80 ~n~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~~ 128 (132)
.||+|||||||+||++++.|.++ +|+++ +|+.+|++|+.||+.++||
T Consensus 192 ~Ng~DCGvfvl~~~e~~~~~~~~-~f~q~-dm~~~R~~m~~eil~~~ll 238 (238)
T 2xph_A 192 MNGSDCGMFACKYADCITKDRPI-NFTQQ-HMPYFRKRMVWEILHRKLL 238 (238)
T ss_dssp SBGGGHHHHHHHHHHHHHTTCCC-CCCGG-GHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCC-CcChh-hHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999887 99999 9999999999999999986
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.95 E-value=2.4e-27 Score=170.33 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=84.6
Q ss_pred CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862 2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS 81 (132)
Q Consensus 2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n 81 (132)
++||+|++||+++++|.+|||+++..+... ...++.++ .++..+. .++.+ .+|.+. ..++|||.|
T Consensus 112 ~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~-~~i~~~l~----~~l~~e~-~~~~~--------~~~~~~-~~~~PqQ~N 176 (221)
T 1euv_A 112 QSHWALGIIDLKKKTIGYVDSLSNGPNAMS-FAILTDLQ----KYVMEES-KHTIG--------EDFDLI-HLDCPQQPN 176 (221)
T ss_dssp TTEEEEEEEETTTTEEEEECSSCCSCCHHH-HHHHHHHH----HHHHHHT-TSSSC--------TTCEEE-EECCCCCSS
T ss_pred CCeEEEEEEEcCCCEEEEEecCCCCCcchH-HHHHHHHH----HHHHHHH-HHhcC--------CCceEe-ecCCCCCCC
Confidence 489999999999999999999997544311 11233333 3333333 33222 456654 458999999
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHHHHHhccc
Q 032862 82 GGDCGVFLLRYLEVLAHGLDVNSYCQQDHVTQFRQALAVKLFGHRS 127 (132)
Q Consensus 82 ~~DCGvfvl~~~e~~~~~~~~~~~~~~~~i~~~R~~l~~~l~~~~~ 127 (132)
|+|||||||+||++++.|.++ +|+++ +|+.+|++|+.+|+.+++
T Consensus 177 ~~DCGvfv~~~~~~~~~~~~l-~f~~~-d~~~~R~~i~~~Il~~~l 220 (221)
T 1euv_A 177 GYDCGIYVCMNTLYGSADAPL-DFDYK-DAIRMRRFIAHLILTDAL 220 (221)
T ss_dssp SSTHHHHHHHHHHHHHTTCCC-CCCHH-HHHHHHHHHHHHHHTTTT
T ss_pred CcCHHHHHHHHHHHHhCCCCC-CcCHH-HHHHHHHHHHHHHHhccC
Confidence 999999999999999999988 99999 999999999999999876
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.91 E-value=1.3e-24 Score=155.11 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=75.9
Q ss_pred CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCC
Q 032862 2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKS 81 (132)
Q Consensus 2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n 81 (132)
|+||+|+||++++++|.+|||+++.+ .... +.+.+.+..++. .+ . .+|.+. .+++|||.|
T Consensus 100 ~~HW~L~vi~~~~~~i~~~DSl~~~n-~~~~----~~l~~~l~~~l~-----~~----~-----~~~~~~-~~~~PqQ~N 159 (212)
T 2bkr_A 100 GSHWSLLVYLQDKNSFFHYDSHSRSN-SVHA----KQVAEKLEAFLG-----RK----G-----DKLAFV-EEKAPAQQN 159 (212)
T ss_dssp CCCEEEEEEEGGGTEEEEECSSTTTT-HHHH----HHHHHHHHHHHS-----CT----T-----CCCCEE-ECCCCCCSS
T ss_pred CCCeEEEEEEecCCeEEEEeCCCCCC-HHHH----HHHHHHHHHHhC-----Cc----c-----ccceEe-ECCCCCCCC
Confidence 69999999999999999999999854 3232 233333433321 11 0 233333 468999999
Q ss_pred CCCcHHHHHHHHHHHhcCC----CC---CCCccchhHHHHHHHHHHHHHhc
Q 032862 82 GGDCGVFLLRYLEVLAHGL----DV---NSYCQQDHVTQFRQALAVKLFGH 125 (132)
Q Consensus 82 ~~DCGvfvl~~~e~~~~~~----~~---~~~~~~~~i~~~R~~l~~~l~~~ 125 (132)
|+|||||||+||++++.+. ++ ..|+++ +|..+|++|+..|..-
T Consensus 160 ~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~R~~i~~lI~~L 209 (212)
T 2bkr_A 160 SYDCGMYVICNTEALCQNFFRQQTESLLQLLTPA-YITKKRGEWKDLIATL 209 (212)
T ss_dssp SSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHH-HHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhhhcCcccccccCCHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999998775 11 257888 9999999999888753
No 5
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.88 E-value=5.4e-23 Score=144.21 Aligned_cols=100 Identities=26% Similarity=0.181 Sum_probs=69.6
Q ss_pred CCeEEEEEEeCCCCeE---EEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCC
Q 032862 2 NDHWVLGVVDILGGKI---SIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQ 78 (132)
Q Consensus 2 ~~HW~L~vv~~~~~~i---~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 78 (132)
|+||+|+|||.+++++ ++|||+++.. . ..+ .+.+.+..++ + .+. .++ ...++||
T Consensus 73 ~~HWsLlvi~~~~~~~~~~~~~DSl~~~~-~-~~~----~l~~~l~~~l---~------~~~-----~~~---~~~~~Pq 129 (186)
T 2oix_A 73 NAHWSLLVVDRRNKDAVAAYHYDSMAQKD-P-QQR----YLADMAAYHL---G------LDY-----QQT---HEMPIAI 129 (186)
T ss_dssp TTEEEEEEEECSSTTSCEEEEECCCSSCC-H-HHH----HHHHHHHHHT---T------CCG-----GGC---EEECBCC
T ss_pred CCccEEEEEECCCCeeeeeEEEcCCCCCC-H-HHH----HHHHHHHHHh---C------CCc-----ccc---ccCCCCC
Confidence 6899999999999999 9999999843 2 111 2233332221 1 111 222 2457999
Q ss_pred CCCCCCcHHHHHHHHHHHhcC----C--CCCCCccchhHHHHHHHHHHHHHhc
Q 032862 79 PKSGGDCGVFLLRYLEVLAHG----L--DVNSYCQQDHVTQFRQALAVKLFGH 125 (132)
Q Consensus 79 Q~n~~DCGvfvl~~~e~~~~~----~--~~~~~~~~~~i~~~R~~l~~~l~~~ 125 (132)
|.||+|||||||+|+++++.+ . .+..++.+ ++...|+.|...|.+.
T Consensus 130 Q~Ng~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~-~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 130 QSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLT-DIEPDRGLIRDRLAQA 181 (186)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBT-TCCCCHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcCccCCCcCCHH-HHHHHHHHHHHHHHhc
Confidence 999999999999999998753 1 23357777 9999999998888764
No 6
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.85 E-value=7.5e-21 Score=142.62 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=67.3
Q ss_pred eEEEEcCCCCCCChHHHHHhHHHHHHHHHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCCCCCCcHHHHHHHHHH
Q 032862 16 KISIYDSMIDLTKDSVLVRQLLPVADMIPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPKSGGDCGVFLLRYLEV 95 (132)
Q Consensus 16 ~i~~~DSl~~~~~~~~~~~~~~~i~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~n~~DCGvfvl~~~e~ 95 (132)
+|.+||||++..+... ++.|++++. .+. .++++....+ +.+.|... .+.+|+|.|++|||||||+|+++
T Consensus 207 cIl~lDSL~~~~~~~~----~~~Lr~YL~----~E~-~~k~~~~~~f-~~~~~~~~-~~~~P~Q~N~~DCGvfvl~~~e~ 275 (323)
T 3eay_A 207 CILILDSLKAASVQNT----VQNLREYLE----VEW-EVKLKTHRQF-SKTNMVDL-CPKVPKQDNSSDCGVYLLQYVES 275 (323)
T ss_dssp EEEEECSSCCSSHHHH----HHHHHHHHH----HHH-HHHHSSCCCC-CTTTSCEE-CCBCCCCCSTTCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcchH----HHHHHHHHH----HHH-HhhcCCCcCC-CHhHceec-cCCCCCcCCCCcHHHHHHHHHHH
Confidence 6999999999653323 444555543 443 4333222232 34677654 46899999999999999999999
Q ss_pred HhcCCCCC---------CCccchhHHHHHHHHHHHHHh
Q 032862 96 LAHGLDVN---------SYCQQDHVTQFRQALAVKLFG 124 (132)
Q Consensus 96 ~~~~~~~~---------~~~~~~~i~~~R~~l~~~l~~ 124 (132)
++.+.+++ .|+.. .|...|..|..-|..
T Consensus 276 ~~~~~~~~f~~~~~~~~wf~~~-~i~~kR~ei~~LI~~ 312 (323)
T 3eay_A 276 FFKDPIVNFELPIHLEKWFPRH-VIKTKREDIRELILK 312 (323)
T ss_dssp HHHSCCCCCCSSCBCTTSSCHH-HHHTHHHHHHHHHHH
T ss_pred HHhCCccccccccccccCCCHH-HHHHHHHHHHHHHHH
Confidence 99887541 24556 899999988776654
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=98.13 E-value=2.2e-05 Score=54.16 Aligned_cols=83 Identities=13% Similarity=0.228 Sum_probs=52.7
Q ss_pred CCeEEEEEEeCCCCeEEEEcCCCCCCChHHHHHhHHHHHHH-HHHHHHHhhhccCCCCCCCCccCCCeeEEeeccCCCCC
Q 032862 2 NDHWVLGVVDILGGKISIYDSMIDLTKDSVLVRQLLPVADM-IPLVLQKIAYHETHPDCSEVISKIPWPIVRVRDILQPK 80 (132)
Q Consensus 2 ~~HW~L~vv~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~-l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~ 80 (132)
|.||+.++.|+..++++.||+++=+. . ++.... ++ -..+++..+.....-+. .+.+.....-|=+
T Consensus 52 GvHWiA~Aw~P~s~~~YmFDPfG~sd-~-~L~qiY----~F~Y~~llkRSAL~sspdRC--------v~LvkstqsVQcp 117 (204)
T 4ekf_A 52 GVHWMAFAWNPRSKTCYLFEPFGFSD-Q-RLKQVY----QFEYESLLRRSAIASSPDRC--------ITLEKSTQSVQGP 117 (204)
T ss_dssp CCCEEEEEEETTTTEEEEECTBTTCS-H-HHHHHH----HHHHHHHHHHHCC----------------EEEECCSBCSCT
T ss_pred ceeEEEeEecCCcceEEEeCCCCCCH-H-HHHHHh----hhhHHHHHHHHhhcCCCCce--------eEEEeccccccCc
Confidence 68999999999999999999999853 2 433311 11 13344433310100011 2233444556667
Q ss_pred CCCCcHHHHHHHHHHHhc
Q 032862 81 SGGDCGVFLLRYLEVLAH 98 (132)
Q Consensus 81 n~~DCGvfvl~~~e~~~~ 98 (132)
++.-||.|++.|+.++..
T Consensus 118 ~SaACGLFC~lFL~aF~~ 135 (204)
T 4ekf_A 118 NSAAAGLFCCMFLHAFAN 135 (204)
T ss_dssp TCCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 899999999999999874
No 8
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=59.76 E-value=14 Score=23.69 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=18.9
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcCCCC
Q 032862 77 LQPKSGGDCGVFLLRYLEVLAHGLDV 102 (132)
Q Consensus 77 P~Q~n~~DCGvfvl~~~e~~~~~~~~ 102 (132)
-.|.+..|||+-++..+-.+ .|.+.
T Consensus 9 ~~Q~~~~dcglacLa~i~~~-~g~~~ 33 (156)
T 3k8u_A 9 VPQIDTRDCGPAVLASVAKH-YGSNY 33 (156)
T ss_dssp CCCSSTTCHHHHHHHHHHHH-TTCCC
T ss_pred EECCCCCCHHHHHHHHHHHH-hCCCC
Confidence 35778899999999887665 36554
No 9
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=35.65 E-value=7.7 Score=17.73 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=6.1
Q ss_pred CCCCC-CcHHH
Q 032862 79 PKSGG-DCGVF 88 (132)
Q Consensus 79 Q~n~~-DCGvf 88 (132)
|+++| |.|+.
T Consensus 8 qq~~y~DSGI~ 18 (26)
T 1p22_C 8 QQQSYLDSGIH 18 (26)
T ss_pred hhcCccccccc
Confidence 44565 77763
No 10
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=31.92 E-value=63 Score=20.07 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=17.3
Q ss_pred CCeEEEEEEeCCCCeEEEEcCCCC
Q 032862 2 NDHWVLGVVDILGGKISIYDSMID 25 (132)
Q Consensus 2 ~~HW~L~vv~~~~~~i~~~DSl~~ 25 (132)
++|++++-++-.++.+.+.|+-.+
T Consensus 86 g~~~Vv~~~~~~~~~~~I~dP~~g 109 (142)
T 3zua_A 86 GRHFILTKVSKEANRYLIFDLEQR 109 (142)
T ss_dssp SCCEEEEEEETTTTEEEEEETTTT
T ss_pred CCEEEEEEEeCCCCEEEEEcCCCC
Confidence 457777666655578999999655
No 11
>3rnv_A HC-Pro, helper component proteinase; cysteine protease, proteolysis, hydrolase; 2.00A {Turnip mosaic virus}
Probab=29.67 E-value=52 Score=21.80 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=18.7
Q ss_pred EEEeCCCCeEEEEcCCCCCCC
Q 032862 8 GVVDILGGKISIYDSMIDLTK 28 (132)
Q Consensus 8 ~vv~~~~~~i~~~DSl~~~~~ 28 (132)
+.||...+++.+.||.|+.+.
T Consensus 107 ILVDH~~ktmHViDs~Gs~~t 127 (158)
T 3rnv_A 107 MLVDHKTKIIHVVDSYGSLST 127 (158)
T ss_dssp EEEETTTTEEEEECCSSSCSS
T ss_pred EEEcCCCCeEEeccCCCCCCc
Confidence 678999999999999998754
No 12
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=27.11 E-value=49 Score=14.67 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=9.4
Q ss_pred hHHHHHHHH-HHHHHh
Q 032862 110 HVTQFRQAL-AVKLFG 124 (132)
Q Consensus 110 ~i~~~R~~l-~~~l~~ 124 (132)
.++.+|+++ +++++.
T Consensus 3 s~Q~~rRr~wL~~ll~ 18 (24)
T 3h3g_B 3 SIQDLRRRFFLHHLIA 18 (26)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 467777776 555554
No 13
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=24.11 E-value=37 Score=16.13 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHhcccccccC
Q 032862 110 HVTQFRQALAVKLFGHRSWKKTL 132 (132)
Q Consensus 110 ~i~~~R~~l~~~l~~~~~~~~~~ 132 (132)
....+.++++..|++.++-|.+|
T Consensus 4 kLs~LQ~eLL~aLL~SGlsKe~L 26 (32)
T 1g2y_A 4 KLSQLQTEMLAALLESGLSKEAL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcHHHH
Confidence 45678889999999998877643
Done!