BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032863
(132 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224065689|ref|XP_002301922.1| predicted protein [Populus trichocarpa]
gi|222843648|gb|EEE81195.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/132 (93%), Positives = 130/132 (98%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEASGH+VTVELKSGELYRGSMVECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS+S+GVGRGR+VAMR+KA A GRGA
Sbjct: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASLGVGRGRSVAMRSKAQATGRGA 120
Query: 121 APGRGVVPPVRR 132
APGRGVVPPVRR
Sbjct: 121 APGRGVVPPVRR 132
>gi|224083270|ref|XP_002306975.1| predicted protein [Populus trichocarpa]
gi|222856424|gb|EEE93971.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/132 (93%), Positives = 129/132 (97%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEASGH+VTVELKSGELYRG MVECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGGMVECEDNWNCQLESITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS+S+GVGRGR+VAMR+KA AAGRGA
Sbjct: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASLGVGRGRSVAMRSKAQAAGRGA 120
Query: 121 APGRGVVPPVRR 132
PGRGVVPPVRR
Sbjct: 121 PPGRGVVPPVRR 132
>gi|351721470|ref|NP_001237722.1| uncharacterized protein LOC100305856 [Glycine max]
gi|356525557|ref|XP_003531391.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Glycine max]
gi|255626793|gb|ACU13741.1| unknown [Glycine max]
Length = 131
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/132 (93%), Positives = 128/132 (96%), Gaps = 1/132 (0%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSM+ECEDNWNCQLE+ITYTAKDGK SQL
Sbjct: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK +S+GVGRGRAVAMRAKA AAGRGA
Sbjct: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGA 120
Query: 121 APGRGVVPPVRR 132
APGRG VPPVRR
Sbjct: 121 APGRG-VPPVRR 131
>gi|255539216|ref|XP_002510673.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
gi|223551374|gb|EEF52860.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
Length = 131
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/132 (91%), Positives = 127/132 (96%), Gaps = 1/132 (0%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GH+VTVELKSGELYRGSMVECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHIVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS+S+GVGRGR+VAMRAKA AAGR A
Sbjct: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASLGVGRGRSVAMRAKAQAAGR-A 119
Query: 121 APGRGVVPPVRR 132
PGRG PPVRR
Sbjct: 120 GPGRGTAPPVRR 131
>gi|357519697|ref|XP_003630137.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|355524159|gb|AET04613.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|388503694|gb|AFK39913.1| unknown [Medicago truncatula]
Length = 131
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/132 (92%), Positives = 127/132 (96%), Gaps = 1/132 (0%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEASGHVVTVELKSGELYRG+M+ECEDNWNCQLE+ITYTAKDGK SQL
Sbjct: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK +S+GVGRGRAVAMRAKA AAGRGA
Sbjct: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGA 120
Query: 121 APGRGVVPPVRR 132
PGRG VPPVRR
Sbjct: 121 PPGRG-VPPVRR 131
>gi|449512675|ref|XP_004164112.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/132 (90%), Positives = 126/132 (95%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK +S+GVGRGRAVAMRAKA AAGRG+
Sbjct: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
Query: 121 APGRGVVPPVRR 132
APGRG P RR
Sbjct: 121 APGRGAPPSGRR 132
>gi|388502716|gb|AFK39424.1| unknown [Lotus japonicus]
Length = 133
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 120/132 (90%), Positives = 127/132 (96%), Gaps = 1/132 (0%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEASGHVVTVELKSGELYRG+M+ECEDNWNCQLE+ITYTAKDGK SQL
Sbjct: 3 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQL 62
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGK +S+GVGRGRAVAMRAKA +AGRGA
Sbjct: 63 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQSAGRGA 122
Query: 121 APGRGVVPPVRR 132
APGRG PPVRR
Sbjct: 123 APGRG-APPVRR 133
>gi|449455595|ref|XP_004145538.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/132 (90%), Positives = 125/132 (94%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVV+VELKSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGK +S+GVGRGRAVAMRAKA AAGRG+
Sbjct: 61 EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
Query: 121 APGRGVVPPVRR 132
APGRG P RR
Sbjct: 121 APGRGAPPSGRR 132
>gi|116780936|gb|ABK21888.1| unknown [Picea sitchensis]
Length = 133
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/133 (86%), Positives = 121/133 (90%), Gaps = 1/133 (0%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELKSGELYRG+M+ECEDNWNCQLE ITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLEGITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDML+NAPMF+RLDARIKGK SSIGVGRGRAVAMRA+A A GR
Sbjct: 61 EHVFIRGSKVRFMVIPDMLRNAPMFRRLDARIKGKGSSIGVGRGRAVAMRARAQATGRAG 120
Query: 121 AP-GRGVVPPVRR 132
P GR PVRR
Sbjct: 121 PPAGRAGPAPVRR 133
>gi|302811572|ref|XP_002987475.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
gi|300144881|gb|EFJ11562.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
Length = 135
Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/136 (83%), Positives = 123/136 (90%), Gaps = 5/136 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS+SLGIPVKLLHEA GHVVTVELKSGELYRG+++ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1 MSKSLGIPVKLLHEAEGHVVTVELKSGELYRGTLIECEDNWNCQLENITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK-SSSIGVGRGRAVAMRAKAAAAGRG 119
EHVF+RGSKVRFM+IPDMLKNAPMFKRL+A+IKGK S+ IGVGRGRAV+MRAKA AAGRG
Sbjct: 61 EHVFVRGSKVRFMIIPDMLKNAPMFKRLEAKIKGKGSAGIGVGRGRAVSMRAKARAAGRG 120
Query: 120 A---APGRGVVPPVRR 132
PG G PVRR
Sbjct: 121 VPQPVPG-GRAMPVRR 135
>gi|21555384|gb|AAM63846.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 131
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/132 (87%), Positives = 121/132 (91%), Gaps = 1/132 (0%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEASGH+VTVELKSGELYRGSM+ECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGKSSS+GVGRGRA AMR K AA
Sbjct: 61 EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRA-AMRGKPAAGPGRG 119
Query: 121 APGRGVVPPVRR 132
GRG VPPVRR
Sbjct: 120 TGGRGAVPPVRR 131
>gi|388516583|gb|AFK46353.1| unknown [Lotus japonicus]
Length = 132
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/113 (91%), Positives = 111/113 (98%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHE+SGH+V+VELKSGELYRGSM+ECEDNWNCQLE+ITYTAKDGK SQL
Sbjct: 1 MSRSLGIPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR+KGK +S+GVGRGRAVAMRAKA
Sbjct: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGASLGVGRGRAVAMRAKA 113
>gi|148909638|gb|ABR17910.1| unknown [Picea sitchensis]
Length = 133
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/116 (89%), Positives = 112/116 (96%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELKSGELYRG+M+ECEDNWNCQLE ITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLEGITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAA 116
EHVFIRGSKVRFMVIPDML+NAPMF+RLDARIKG+ SS+GVGRGRAVAMRA+A A
Sbjct: 61 EHVFIRGSKVRFMVIPDMLRNAPMFRRLDARIKGRGSSLGVGRGRAVAMRARAQAT 116
>gi|297845022|ref|XP_002890392.1| hypothetical protein ARALYDRAFT_335306 [Arabidopsis lyrata subsp.
lyrata]
gi|297336234|gb|EFH66651.1| hypothetical protein ARALYDRAFT_335306 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 112/134 (83%), Positives = 119/134 (88%), Gaps = 4/134 (2%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEASGH+VTVELKSGELYRGSM+ECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGKSSS+GVGRGRA AMR K AA G+
Sbjct: 61 EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRA-AMRGKVKAAFLGS 119
Query: 121 ---APGRGVVPPVR 131
A G V P R
Sbjct: 120 VIYALGYAVKPNKR 133
>gi|18394883|ref|NP_564119.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|8886923|gb|AAF80609.1|AC069251_2 F2D10.7 [Arabidopsis thaliana]
gi|15724292|gb|AAL06539.1|AF412086_1 At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|20334748|gb|AAM16235.1| At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|332191869|gb|AEE29990.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
Length = 131
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/132 (86%), Positives = 120/132 (90%), Gaps = 1/132 (0%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEASGH+VTVELKSGELYRGSM+ECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGKSSS+GVGRGR AMR K AA
Sbjct: 61 EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 119
Query: 121 APGRGVVPPVRR 132
GRG VPPVRR
Sbjct: 120 TGGRGAVPPVRR 131
>gi|357145745|ref|XP_003573751.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Brachypodium
distachyon]
Length = 134
Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/114 (87%), Positives = 113/114 (99%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRGSM+ECEDNWNCQ+ENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAA 114
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVGRGRAVAMRA++A
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARSA 114
>gi|223975955|gb|ACN32165.1| unknown [Zea mays]
gi|413935154|gb|AFW69705.1| hypothetical protein ZEAMMB73_559735 [Zea mays]
Length = 125
Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 113/116 (97%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRGSMVECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAA 116
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S++GVGRGRAVAMRA+ ++
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAVGVGRGRAVAMRARVISS 116
>gi|195656155|gb|ACG47545.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 106/129 (82%), Positives = 118/129 (91%), Gaps = 3/129 (2%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRGS+VECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVGRGRAVAMRA+ AGR +
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRAR---AGRLS 117
Query: 121 APGRGVVPP 129
G PP
Sbjct: 118 FLDGGRAPP 126
>gi|414865765|tpg|DAA44322.1| TPA: hypothetical protein ZEAMMB73_746512 [Zea mays]
Length = 126
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/113 (88%), Positives = 111/113 (98%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRGS+VECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVGRGRAVAMRA+
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARC 113
>gi|225428263|ref|XP_002282385.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Vitis vinifera]
gi|297744494|emb|CBI37756.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/132 (90%), Positives = 127/132 (96%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELKSGELYRGSM+ECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR+KGK S++GVGRGRAVAMRA+A AAGRGA
Sbjct: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGSALGVGRGRAVAMRARAQAAGRGA 120
Query: 121 APGRGVVPPVRR 132
PGRGV PP RR
Sbjct: 121 PPGRGVAPPGRR 132
>gi|359491835|ref|XP_002270532.2| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Vitis
vinifera]
gi|297745546|emb|CBI40711.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/132 (90%), Positives = 128/132 (96%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELKSGELYRG+M+ECEDNWNCQLE+IT+T KDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLESITFTGKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK S++GVGRGRAVAMRA+A AAGRGA
Sbjct: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGSALGVGRGRAVAMRARAQAAGRGA 120
Query: 121 APGRGVVPPVRR 132
PGRGVVPPVRR
Sbjct: 121 PPGRGVVPPVRR 132
>gi|147822390|emb|CAN59901.1| hypothetical protein VITISV_002889 [Vitis vinifera]
Length = 116
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/112 (89%), Positives = 109/112 (97%), Gaps = 1/112 (0%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELKSGELYRGSM+ECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
EHVFIRGSKV ++ IPDMLKNAPMFKRLDAR+KGK S++GVGRGRAVAMRA+
Sbjct: 61 EHVFIRGSKVPWL-IPDMLKNAPMFKRLDARVKGKGSALGVGRGRAVAMRAR 111
>gi|15223010|ref|NP_177757.1| snRNP core protein SMD3 [Arabidopsis thaliana]
gi|6554488|gb|AAF16670.1|AC012394_19 putative small nuclear ribonucleoprotein Sm D3; 79504-78381
[Arabidopsis thaliana]
gi|6573711|gb|AAF17631.1|AC009978_7 T23E18.23 [Arabidopsis thaliana]
gi|14190503|gb|AAK55732.1|AF380651_1 At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|15809764|gb|AAL06810.1| At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|21592857|gb|AAM64807.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
gi|332197701|gb|AEE35822.1| snRNP core protein SMD3 [Arabidopsis thaliana]
Length = 128
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/132 (81%), Positives = 115/132 (87%), Gaps = 4/132 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHE+SGH+V+VE+KSGELYRGSM+ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGS VRF+VIPDMLKNAPMFK D R KGKS+S+GVGRGR AMRAK G G
Sbjct: 61 EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAKGTGRGTGG 118
Query: 121 APGRGVVPPVRR 132
RG VPPVRR
Sbjct: 119 G--RGAVPPVRR 128
>gi|357113192|ref|XP_003558388.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein Sm
D3-like [Brachypodium distachyon]
Length = 132
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/109 (87%), Positives = 106/109 (97%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YR SM+ECEDNWNCQLENI++TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRXSMLECEDNWNCQLENISFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVGRG AVAM
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGHAVAM 109
>gi|297839503|ref|XP_002887633.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
gi|297333474|gb|EFH63892.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
Length = 129
Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 106/132 (80%), Positives = 113/132 (85%), Gaps = 3/132 (2%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHE+SGH+V+VE+KSGELYRGSM+ECEDNWNCQLENITY AKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYKAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGS VRF+VIPDMLKNAPMFK D R KGKSSS+GVGRGR AMRAK GRG
Sbjct: 61 EHVFIRGSLVRFIVIPDMLKNAPMFK--DVRGKGKSSSLGVGRGRGAAMRAKGQGTGRGT 118
Query: 121 APGRGVVPPVRR 132
VPPVRR
Sbjct: 119 GGRGA-VPPVRR 129
>gi|147809809|emb|CAN60390.1| hypothetical protein VITISV_006493 [Vitis vinifera]
Length = 133
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/131 (87%), Positives = 122/131 (93%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVV VELKSGELYRGSM+EC+DNWNCQLENIT+T KDGKVSQL
Sbjct: 2 MSRSLGIPVKLLHEAAGHVVXVELKSGELYRGSMIECKDNWNCQLENITFTVKDGKVSQL 61
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRG KVRFMVIPDM KNAPMFKRLDAR+KGK S++GVGRGRAVAMRA+A AAGRGA
Sbjct: 62 EHVFIRGIKVRFMVIPDMRKNAPMFKRLDARVKGKGSALGVGRGRAVAMRARAQAAGRGA 121
Query: 121 APGRGVVPPVR 131
PGRGV PP R
Sbjct: 122 PPGRGVAPPGR 132
>gi|226507464|ref|NP_001150683.1| LOC100284316 [Zea mays]
gi|194696928|gb|ACF82548.1| unknown [Zea mays]
gi|195619600|gb|ACG31630.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|195641042|gb|ACG39989.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413956400|gb|AFW89049.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/132 (84%), Positives = 123/132 (93%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRGSMVECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVGRGRAVAMRA+AA+ G
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARAASGRGGG 120
Query: 121 APGRGVVPPVRR 132
GRG PPVRR
Sbjct: 121 PVGRGSAPPVRR 132
>gi|242041599|ref|XP_002468194.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
gi|241922048|gb|EER95192.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
Length = 132
Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/132 (84%), Positives = 123/132 (93%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRG+MVECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVGRGRAVAMRA+AAA G
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARAAAGRGGG 120
Query: 121 APGRGVVPPVRR 132
GRG PPVRR
Sbjct: 121 PVGRGSAPPVRR 132
>gi|195657699|gb|ACG48317.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|414865766|tpg|DAA44323.1| TPA: small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/132 (84%), Positives = 123/132 (93%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRGS+VECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVGRGRAVAMRA+AAA G
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARAAAGRGGG 120
Query: 121 APGRGVVPPVRR 132
GRG PPVRR
Sbjct: 121 PVGRGSAPPVRR 132
>gi|226505392|ref|NP_001152085.1| LOC100285722 [Zea mays]
gi|194699166|gb|ACF83667.1| unknown [Zea mays]
gi|195652485|gb|ACG45710.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413935155|gb|AFW69706.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/102 (89%), Positives = 101/102 (99%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRGSMVECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVG 102
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S++GVG
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAVGVG 102
>gi|8778615|gb|AAF79623.1|AC027665_24 F5M15.9 [Arabidopsis thaliana]
Length = 207
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/160 (69%), Positives = 117/160 (73%), Gaps = 32/160 (20%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEASGH+VTVELKSGELYRGSM+ECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKV-------------------------------RFMVIPDMLKNAPMFKRLD 89
EHVFIRGSKV RFMVIPD+LK+APMFKRLD
Sbjct: 61 EHVFIRGSKVRCCTCFLVYVIHGIILVNPSCLVIDLRIYLDRFMVIPDILKHAPMFKRLD 120
Query: 90 ARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGRGVVPP 129
ARIKGKSSS+GVGRGR AMR K AA GRG VPP
Sbjct: 121 ARIKGKSSSLGVGRGRG-AMRGKPAAGPGRGTGGRGAVPP 159
>gi|115443639|ref|NP_001045599.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|41052905|dbj|BAD07817.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|41053239|dbj|BAD08200.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|113535130|dbj|BAF07513.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|215692366|dbj|BAG87786.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692586|dbj|BAG88006.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737277|dbj|BAG96206.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189864|gb|EEC72291.1| hypothetical protein OsI_05466 [Oryza sativa Indica Group]
gi|222621997|gb|EEE56129.1| hypothetical protein OsJ_05002 [Oryza sativa Japonica Group]
Length = 132
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/102 (89%), Positives = 101/102 (99%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRGSMVECEDNWNCQL+NIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVG 102
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVG
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVG 102
>gi|195658123|gb|ACG48529.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/102 (89%), Positives = 101/102 (99%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRGS+VECEDNWNCQLENIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVG 102
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVG
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVG 102
>gi|168011639|ref|XP_001758510.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168011861|ref|XP_001758621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690120|gb|EDQ76488.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690231|gb|EDQ76599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/137 (76%), Positives = 119/137 (86%), Gaps = 5/137 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS+SLGIPVKLLHEA GH+VTVELKSGE+YRGS++ECEDNWN QLE+ITYTAKDGKVSQL
Sbjct: 1 MSKSLGIPVKLLHEAEGHIVTVELKSGEVYRGSLIECEDNWNSQLESITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARI-KGKSSSIGVGRGRAVAMRAKAAAAGRG 119
EHVFIRGSKVR+M+IPDMLKNAPMFKRLDA+I SS +GVGRGRA M+AKA +A RG
Sbjct: 61 EHVFIRGSKVRYMIIPDMLKNAPMFKRLDAKIKGKGSSGVGVGRGRASTMQAKARSAARG 120
Query: 120 AAP----GRGVVPPVRR 132
+ P GRG PP+RR
Sbjct: 121 SVPPPMGGRGAAPPMRR 137
>gi|115451821|ref|NP_001049511.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|108707095|gb|ABF94890.1| Small nuclear ribonucleoprotein Sm D3, putative, expressed [Oryza
sativa Japonica Group]
gi|113547982|dbj|BAF11425.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|215686515|dbj|BAG87776.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765251|dbj|BAG86948.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768316|dbj|BAH00545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 132
Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/102 (88%), Positives = 101/102 (99%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRG+MVECEDNWNCQL+NIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVG 102
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVG
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVG 102
>gi|125543063|gb|EAY89202.1| hypothetical protein OsI_10698 [Oryza sativa Indica Group]
gi|125585557|gb|EAZ26221.1| hypothetical protein OsJ_10089 [Oryza sativa Japonica Group]
Length = 134
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 90/102 (88%), Positives = 101/102 (99%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MSRSLGIPVKLLHEA+GHVVTVELK+GE+YRG+MVECEDNWNCQL+NIT+TAKDGKVSQL
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVG 102
EHVFIRGS+VRFM+IPDMLKNAPMFKRL+ARI+GK S+IGVG
Sbjct: 61 EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVG 102
>gi|302796635|ref|XP_002980079.1| hypothetical protein SELMODRAFT_112116 [Selaginella
moellendorffii]
gi|300152306|gb|EFJ18949.1| hypothetical protein SELMODRAFT_112116 [Selaginella
moellendorffii]
Length = 95
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 84/93 (90%), Positives = 92/93 (98%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS+SLGIPVKLLHEA GHVVTVELKSGELYRG+++ECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1 MSKSLGIPVKLLHEAEGHVVTVELKSGELYRGTLIECEDNWNCQLENITYTAKDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIK 93
EHVF+RGSKVRFM+IPDMLKNAPMFKRL+A+IK
Sbjct: 61 EHVFVRGSKVRFMIIPDMLKNAPMFKRLEAKIK 93
>gi|168003064|ref|XP_001754233.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694787|gb|EDQ81134.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 98
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 87/96 (90%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS+SLGI VKLLHEA GH+VTVELKSGE YRGS++ECEDNWN QLE++TYTA DGKVSQL
Sbjct: 1 MSKSLGILVKLLHEAEGHIVTVELKSGEAYRGSLIECEDNWNSQLESVTYTAMDGKVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS 96
EHV IRGSKVRFM+IPD+LKNAPMFKRLD +IK S
Sbjct: 61 EHVSIRGSKVRFMIIPDILKNAPMFKRLDTKIKVHS 96
>gi|307109545|gb|EFN57783.1| hypothetical protein CHLNCDRAFT_143127 [Chlorella variabilis]
Length = 126
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 92/111 (82%), Gaps = 1/111 (0%)
Query: 3 RSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEH 62
+ +G+P+KLLHEA+GHV TVELKSGE+YRG M E EDNWN QL N+ T +DGKV+ +EH
Sbjct: 10 KGVGVPIKLLHEATGHVCTVELKSGEIYRGEMYEAEDNWNVQLSNVQATGRDGKVTHMEH 69
Query: 63 VFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV-GRGRAVAMRAK 112
+FIRG +VRF+++PDMLKNAPMFKR+D + K KS+ +GV GRGRAVA RA
Sbjct: 70 IFIRGGRVRFVIVPDMLKNAPMFKRIDPKNKMKSAVLGVGGRGRAVADRAN 120
>gi|303273780|ref|XP_003056242.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462326|gb|EEH59618.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 122
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 80/91 (87%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
+ + +GIPVKLLHEA GH VT+ELK+GE YRG+++E EDNWNCQLE IT T +DG+V+QL
Sbjct: 5 LGKGIGIPVKLLHEAEGHTVTIELKNGETYRGTLLESEDNWNCQLEGITQTGRDGRVNQL 64
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR 91
EH +IRGSK+RF+VIPDMLKNAPMFKR+D R
Sbjct: 65 EHAYIRGSKIRFLVIPDMLKNAPMFKRIDPR 95
>gi|111226987|ref|XP_001134627.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|90971301|gb|EAS66961.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 146
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 90/101 (89%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIPVK+LHEA GH+VTVELK+GELYRG+++E EDN NC+++NIT TA+DG+ SQ+E+
Sbjct: 2 SIGIPVKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTARDGRNSQMEYC 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
++RGSKVRF+++PD+LKNAPMFKR+D R+ K ++G+G+G
Sbjct: 62 YVRGSKVRFIILPDILKNAPMFKRIDGRVVLKGKALGIGKG 102
>gi|330802087|ref|XP_003289052.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
gi|325080886|gb|EGC34423.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
Length = 149
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 90/103 (87%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIPVK+LHEA GH+VTVELK+GELYRG+++E EDN NC+++NIT TAKDG+ SQ+E+
Sbjct: 2 SIGIPVKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTAKDGRNSQMEYC 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
++RGSKVRF+++PD+LKNAPMFKR+D R+ K ++G+ +G A
Sbjct: 62 YVRGSKVRFIILPDILKNAPMFKRIDGRVVLKGKALGISKGAA 104
>gi|170087186|ref|XP_001874816.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650016|gb|EDR14257.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 127
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 93/131 (70%), Gaps = 8/131 (6%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS LG+PVKLLHE+ GH++TVELK+G+LYRG + E EDN N L++IT T +DG+VSQL
Sbjct: 1 MSAGLGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+ V+IRGS VRF ++PDML+NAPMFKR+ + IG RGRA MRA A
Sbjct: 61 DQVYIRGSMVRFFIVPDMLQNAPMFKRVGPNAM-RGRGIGTARGRATIMRANARR----- 114
Query: 121 APGRGVVPPVR 131
GRGVVPP R
Sbjct: 115 --GRGVVPPAR 123
>gi|221131194|ref|XP_002165640.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Hydra
magnipapillata]
Length = 130
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 93/115 (80%), Gaps = 4/115 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS S+G+P+K+LHEA GH+VT+E +GE+YRG ++E EDN NCQL +IT TA+DGKV+QL
Sbjct: 1 MSGSIGVPIKVLHEAEGHIVTLETLTGEVYRGKLLEAEDNMNCQLTHITMTARDGKVAQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
E +FIRGSK+RF+++PDMLKNAPMFK++ K + GVGRG++ ++A+ AA
Sbjct: 61 EQIFIRGSKIRFVILPDMLKNAPMFKKMLVSQK----NTGVGRGKSALLKAQVAA 111
>gi|281201849|gb|EFA76057.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 351
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 89/105 (84%), Gaps = 2/105 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIPVK+LHEA HV+T+EL++G+LYRG+++E EDN NC++ENIT TAK+GK +Q+E +
Sbjct: 71 SIGIPVKILHEADSHVITLELRNGDLYRGTLIESEDNMNCRMENITMTAKNGKQTQIEQI 130
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGR--GRA 106
+IRGSK+RF ++PDMLKNAPMFKR+D R + S+G+GR GRA
Sbjct: 131 YIRGSKIRFFILPDMLKNAPMFKRIDGRTVLRGKSLGIGRSVGRA 175
>gi|156402297|ref|XP_001639527.1| predicted protein [Nematostella vectensis]
gi|156226656|gb|EDO47464.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GHV+T+E +GE+YRG ++E EDN NCQ+ NIT TA+DG+VSQLE V
Sbjct: 2 SIGVPIKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITVTARDGRVSQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
F+RGSK+RF+++PDMLKNAPMFK++ KG S + GRG++ +RA+
Sbjct: 62 FVRGSKIRFLILPDMLKNAPMFKKMTQ--KGSSGTGAAGRGKSAILRAQ 108
>gi|384251125|gb|EIE24603.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 124
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 82/95 (86%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
++ +G+PVKLLHEA GHV+TVELKSGE YRG + E ED+WN QL+ +T TAKDG+VS LE
Sbjct: 4 AKGVGVPVKLLHEAEGHVITVELKSGETYRGELAEAEDSWNVQLKQVTATAKDGRVSHLE 63
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS 96
H+F+RGS+VRF++IPDMLKNAPMFKR+D + K K+
Sbjct: 64 HIFVRGSRVRFVIIPDMLKNAPMFKRIDPKNKAKA 98
>gi|255081394|ref|XP_002507919.1| predicted protein [Micromonas sp. RCC299]
gi|226523195|gb|ACO69177.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 81/89 (91%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
+ + +GIPVKLLHEA GH VT+ELK+G+ YRG+++E EDNWNCQLE IT+T +DG+V+QL
Sbjct: 5 LGKGIGIPVKLLHEAEGHTVTIELKTGDTYRGTLLEAEDNWNCQLEGITHTGRDGRVNQL 64
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLD 89
E+V++RGSK+RF++IPDMLKNAPMFKR+D
Sbjct: 65 ENVYVRGSKIRFLIIPDMLKNAPMFKRID 93
>gi|159480580|ref|XP_001698360.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158282100|gb|EDP07853.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 127
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 84/98 (85%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
++ +GIPVKLLHEA GHVVTVELKSGE+YRG + + EDN NCQL+++T T +DG+V+QL
Sbjct: 5 AKGIGIPVKLLHEAEGHVVTVELKSGEMYRGELCDAEDNMNCQLKDVTATGRDGRVTQLA 64
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSI 99
H+FIRGS+VRF +IPDMLKNAPMFKR+D + K K+ ++
Sbjct: 65 HLFIRGSRVRFFIIPDMLKNAPMFKRIDPKFKNKNMAL 102
>gi|302830880|ref|XP_002947006.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
gi|300268050|gb|EFJ52232.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
Length = 129
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 82/98 (83%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
+ +GIPVKLLHEA GHVVTVELKSGE+YRG + E EDN N QL+++T T +DG+VSQL
Sbjct: 5 QKGIGIPVKLLHEAEGHVVTVELKSGEMYRGELFEAEDNMNVQLKDVTATGRDGRVSQLA 64
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSI 99
H+FIRGS+VRF +IPDMLKNAPMFKR+D + K K+ ++
Sbjct: 65 HIFIRGSRVRFFIIPDMLKNAPMFKRIDPKFKNKNMAL 102
>gi|393217444|gb|EJD02933.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 126
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 95/127 (74%), Gaps = 4/127 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS SLG+PVKLLHE+ GHV+TVELK+G+LYRG + E ED+ N L++IT T +DG+VSQL
Sbjct: 1 MSSSLGVPVKLLHESLGHVITVELKTGQLYRGKLAEAEDSLNISLKDITVTGRDGRVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+ V+IRGS VRF ++PDML+NAPMFKR+ ++G+ IG RGRA MRA A GRG
Sbjct: 61 DQVYIRGSMVRFFIVPDMLQNAPMFKRVGPNAMRGR--GIGTARGRATIMRAN-ARRGRG 117
Query: 120 AAPGRGV 126
RG+
Sbjct: 118 QPAARGI 124
>gi|156550773|ref|XP_001605596.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nasonia
vitripennis]
Length = 142
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 94/124 (75%), Gaps = 6/124 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ++NIT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAP- 122
+IRGSK+RF+++PDMLKNAPMFKR + G + GRG++ +RA+A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTA-----GRGKSAILRAQARGRGRGQNQR 116
Query: 123 GRGV 126
GRG
Sbjct: 117 GRGT 120
>gi|395333040|gb|EJF65418.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 128
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 92/123 (74%), Gaps = 3/123 (2%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
LG+PVKLLHE+ GHV+TVELK+G+LYRG + E EDN N L++IT T +DG+VSQL+ V+
Sbjct: 6 LGVPVKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDGRVSQLDQVY 65
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPG 123
IRGS VRF ++PDML+NAPMFKR+ ++G+ IG RGRA MR ++ GRG
Sbjct: 66 IRGSMVRFFIVPDMLQNAPMFKRVGPNAMRGR--GIGTARGRATIMRGASSRRGRGVPAA 123
Query: 124 RGV 126
RG+
Sbjct: 124 RGI 126
>gi|307192021|gb|EFN75405.1| Small nuclear ribonucleoprotein Sm D3 [Harpegnathos saltator]
Length = 142
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 91/116 (78%), Gaps = 5/116 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ++NIT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+IRGSK+RF+++PDMLKNAPMFKR + G + GRG++ +RA+A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTA-----GRGKSAILRAQARGRGRG 112
>gi|392569479|gb|EIW62652.1| small nuclear ribonucleo protein Sm D3 [Trametes versicolor
FP-101664 SS1]
Length = 131
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 93/126 (73%), Gaps = 6/126 (4%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
LGIPVKLLHE+ GHV+TVELK+G+LYRG + E EDN N L++IT T +DG+VSQL+ V+
Sbjct: 6 LGIPVKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDGRVSQLDQVY 65
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAK---AAAAGRGA 120
IRGS VRF ++PDML+NAPMFKR+ +KG+ IG RGRA MRA AA GRG
Sbjct: 66 IRGSMVRFFIVPDMLQNAPMFKRVGPNAMKGR--GIGTARGRATIMRALTIFAARRGRGV 123
Query: 121 APGRGV 126
RG+
Sbjct: 124 PAARGI 129
>gi|307192020|gb|EFN75404.1| Small nuclear ribonucleoprotein Sm D3 [Harpegnathos saltator]
Length = 143
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 91/116 (78%), Gaps = 5/116 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ++NIT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+IRGSK+RF+++PDMLKNAPMFKR + G + GRG++ +RA+A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTA-----GRGKSAILRAQARGRGRG 112
>gi|389741899|gb|EIM83087.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 126
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 90/126 (71%), Gaps = 2/126 (1%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS LG+PVKLLHE+ GHV+TVELK+G+LYRG + E EDN N L+ IT T +DG++SQL
Sbjct: 1 MSSGLGVPVKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKEITVTGRDGRISQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+ V+IRGS VRF ++PDML+NAPMFKR+ + IG RGRA MRA A GRG
Sbjct: 61 DQVYIRGSMVRFFIVPDMLQNAPMFKRVGPNAM-RGRGIGTARGRATIMRAN-ARRGRGV 118
Query: 121 APGRGV 126
RG+
Sbjct: 119 PAARGI 124
>gi|307185014|gb|EFN71243.1| Small nuclear ribonucleoprotein Sm D3 [Camponotus floridanus]
Length = 142
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 90/116 (77%), Gaps = 5/116 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ++NIT T +DG+V QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+IRGSK+RF+++PDMLKNAPMFKR + G + GRG++ +RA+A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTA-----GRGKSAILRAQARGRGRG 112
>gi|432888006|ref|XP_004075020.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like, partial
[Oryzias latipes]
Length = 117
Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 89/116 (76%), Gaps = 4/116 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA +G
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQGAAKEKG 113
>gi|332028955|gb|EGI68973.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 142
Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 90/116 (77%), Gaps = 5/116 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ++NIT T +DG+V QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+IRGSK+RF+++PDMLKNAPMFKR + G + GRG++ +RA+A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTA-----GRGKSAILRAQARGRGRG 112
>gi|332028142|gb|EGI68193.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 141
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 90/116 (77%), Gaps = 5/116 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ++NIT T +DG+V QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+IRGSK+RF+++PDMLKNAPMFKR + G + GRG++ +RA+A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTA-----GRGKSAILRAQARGRGRG 112
>gi|238231831|ref|NP_001154102.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
gi|209734524|gb|ACI68131.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
gi|225704048|gb|ACO07870.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
Length = 128
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKILHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGTGAGRGKAAILKAQVAA 109
>gi|449546694|gb|EMD37663.1| hypothetical protein CERSUDRAFT_123559 [Ceriporiopsis subvermispora
B]
Length = 127
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
S LG+PVKLLHE+ GH++TVELK+G+LYRG + E EDN N L+ IT T +DG+VSQL+
Sbjct: 3 SHGLGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKEITVTQRDGRVSQLD 62
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
V+IRGS VRF ++PDML+NAPMFKR+ +KG+ IG RGRA MRA A GRG
Sbjct: 63 QVYIRGSMVRFFIVPDMLQNAPMFKRVGPNAMKGR--GIGTARGRATIMRAN-ARRGRGV 119
Query: 121 APGRGV 126
RG+
Sbjct: 120 PAARGI 125
>gi|302679434|ref|XP_003029399.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
gi|300103089|gb|EFI94496.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
Length = 125
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 89/122 (72%), Gaps = 4/122 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ LG+PVKLLHE+ GH++TVELK+G+LYRG + E EDN N L+ IT T +DG+VSQL
Sbjct: 1 MASGLGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKEITVTGRDGRVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+ V+IRGS +RF ++PDML+NAPMFKR+ K IG RGRA MRA+ GRG
Sbjct: 61 DQVYIRGSMIRFFIVPDMLQNAPMFKRVGPNAM-KGRGIGTARGRATIMRAR---RGRGV 116
Query: 121 AP 122
AP
Sbjct: 117 AP 118
>gi|148227688|ref|NP_001079359.1| uncharacterized protein LOC379046 [Xenopus laevis]
gi|27371312|gb|AAH40973.1| MGC52856 protein [Xenopus laevis]
gi|133736997|gb|AAI33764.1| MGC52856 protein [Xenopus laevis]
Length = 126
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GHVVT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 109
>gi|340904841|gb|EGS17209.1| small nuclear ribonucleoprotein smD3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 114
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 91/118 (77%), Gaps = 4/118 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ S+GIP+KLL+EA GH+VT+EL +G+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSSIGIPIKLLNEAQGHIVTLELTTGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGR 118
E ++IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+A+ GR
Sbjct: 61 EQIYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRATVSRARASGRGR 114
>gi|333656534|gb|AEF68170.1| Sm-D3-like protein [Physarum polycephalum]
Length = 134
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 79/87 (90%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+KLLHEA GH+VT+ELK+GE+YRG ++E EDN NCQL NIT TA+DG++S LEH
Sbjct: 2 SIGVPIKLLHEAEGHIVTIELKTGEVYRGQLIESEDNMNCQLGNITLTARDGRISNLEHA 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDA 90
++RGSK+RF+++PDMLKNAPMFKR++A
Sbjct: 62 YVRGSKIRFLILPDMLKNAPMFKRVEA 88
>gi|47211785|emb|CAF93753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 109
>gi|348513729|ref|XP_003444394.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Oreochromis
niloticus]
Length = 127
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 109
>gi|4759160|ref|NP_004166.1| small nuclear ribonucleoprotein Sm D3 [Homo sapiens]
gi|13385598|ref|NP_080371.1| small nuclear ribonucleoprotein Sm D3 [Mus musculus]
gi|56119060|ref|NP_001007839.1| small nuclear ribonucleoprotein Sm D3 [Gallus gallus]
gi|62859245|ref|NP_001017093.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|148230601|ref|NP_001084936.1| small nuclear ribonucleoprotein Sm D3 [Xenopus laevis]
gi|302563765|ref|NP_001180981.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|343478171|ref|NP_001230355.1| small nuclear ribonucleoprotein Sm D3 [Sus scrofa]
gi|73995845|ref|XP_849660.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Canis lupus
familiaris]
gi|109093572|ref|XP_001096170.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Macaca mulatta]
gi|109509970|ref|XP_001079870.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|126344584|ref|XP_001362481.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Monodelphis
domestica]
gi|149632566|ref|XP_001509901.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like
[Ornithorhynchus anatinus]
gi|149720126|ref|XP_001489110.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Equus
caballus]
gi|291412675|ref|XP_002722599.1| PREDICTED: small nuclear ribonucleoprotein polypeptide D3
[Oryctolagus cuniculus]
gi|296191500|ref|XP_002743645.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Callithrix
jacchus]
gi|297708452|ref|XP_002830980.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pongo
abelii]
gi|301779389|ref|XP_002925102.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Ailuropoda
melanoleuca]
gi|332263674|ref|XP_003280877.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Nomascus
leucogenys]
gi|344294995|ref|XP_003419200.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Loxodonta
africana]
gi|348584590|ref|XP_003478055.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cavia
porcellus]
gi|392355294|ref|XP_003751996.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|395753126|ref|XP_003779546.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pongo
abelii]
gi|395753128|ref|XP_003779547.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 3 [Pongo
abelii]
gi|395861839|ref|XP_003803182.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Otolemur
garnettii]
gi|397469575|ref|XP_003806425.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Pan paniscus]
gi|410055702|ref|XP_003953897.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pan
troglodytes]
gi|410055704|ref|XP_003953898.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pan
troglodytes]
gi|410976969|ref|XP_003994885.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Felis catus]
gi|426247570|ref|XP_004017554.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Ovis aries]
gi|426393867|ref|XP_004063231.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Gorilla gorilla
gorilla]
gi|51338667|sp|P62318.1|SMD3_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|54039609|sp|P62323.1|SMD3_XENLA RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|61246343|sp|P62320.1|SMD3_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|315583600|pdb|3PGW|Z Chain Z, Crystal Structure Of Human U1 Snrnp
gi|315583609|pdb|3PGW|W Chain W, Crystal Structure Of Human U1 Snrnp
gi|332639436|pdb|2Y9A|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639443|pdb|2Y9A|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639450|pdb|2Y9A|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639460|pdb|2Y9B|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639467|pdb|2Y9B|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639474|pdb|2Y9B|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639484|pdb|2Y9C|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639491|pdb|2Y9C|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639498|pdb|2Y9C|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639508|pdb|2Y9D|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639515|pdb|2Y9D|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639522|pdb|2Y9D|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|600750|gb|AAA57034.1| Sm D3 [Homo sapiens]
gi|12653375|gb|AAH00457.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|12837822|dbj|BAB23963.1| unnamed protein product [Mus musculus]
gi|12839911|dbj|BAB24705.1| unnamed protein product [Mus musculus]
gi|12859667|dbj|BAB31729.1| unnamed protein product [Mus musculus]
gi|13111955|gb|AAH03150.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|47122949|gb|AAH70616.1| MGC81359 protein [Xenopus laevis]
gi|47678697|emb|CAG30469.1| SNRPD3 [Homo sapiens]
gi|53130412|emb|CAG31535.1| hypothetical protein RCJMB04_7j2 [Gallus gallus]
gi|74227850|dbj|BAE35738.1| unnamed protein product [Mus musculus]
gi|89266931|emb|CAJ81806.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|90085617|dbj|BAE91549.1| unnamed protein product [Macaca fascicularis]
gi|109451504|emb|CAK54613.1| SNRPD3 [synthetic construct]
gi|109452100|emb|CAK54912.1| SNRPD3 [synthetic construct]
gi|119580074|gb|EAW59670.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|148699966|gb|EDL31913.1| small nuclear ribonucleoprotein D3, isoform CRA_b [Mus musculus]
gi|149043764|gb|EDL97215.1| rCG60635, isoform CRA_b [Rattus norvegicus]
gi|170285144|gb|AAI61305.1| hypothetical protein LOC549847 [Xenopus (Silurana) tropicalis]
gi|197129341|gb|ACH45839.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129342|gb|ACH45840.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129343|gb|ACH45841.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197692199|dbj|BAG70063.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|197692447|dbj|BAG70187.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|208965532|dbj|BAG72780.1| small nuclear ribonucleoprotein D3 polypeptide [synthetic
construct]
gi|296478296|tpg|DAA20411.1| TPA: small nuclear ribonucleoprotein D3 polypeptide 18kDa [Bos
taurus]
gi|355563528|gb|EHH20090.1| hypothetical protein EGK_02876 [Macaca mulatta]
gi|355784846|gb|EHH65697.1| hypothetical protein EGM_02515 [Macaca fascicularis]
gi|380815844|gb|AFE79796.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815846|gb|AFE79797.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815848|gb|AFE79798.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815850|gb|AFE79799.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815852|gb|AFE79800.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|383420997|gb|AFH33712.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|384940658|gb|AFI33934.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|387018114|gb|AFJ51175.1| Small nuclear ribonucleoprotein D3 polypeptide [Crotalus
adamanteus]
gi|410211528|gb|JAA02983.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264204|gb|JAA20068.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264206|gb|JAA20069.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410302836|gb|JAA30018.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|417395981|gb|JAA45024.1| Putative small nuclear ribonucleoprotein sm d3 [Desmodus rotundus]
gi|432095017|gb|ELK26406.1| Small nuclear ribonucleoprotein Sm D3 [Myotis davidii]
gi|449281570|gb|EMC88617.1| Small nuclear ribonucleoprotein Sm D3 [Columba livia]
Length = 126
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 109
>gi|403412007|emb|CCL98707.1| predicted protein [Fibroporia radiculosa]
Length = 127
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 89/122 (72%), Gaps = 2/122 (1%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
LGIPVKLLHE+ GH++TVELK+G+LYRG + E EDN N L++IT T +DG+VSQL+ V+
Sbjct: 6 LGIPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 65
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGR 124
IRGS +RF ++PDML+NAPMFKR+ + IG RGRA MRA A GRG R
Sbjct: 66 IRGSMIRFFIVPDMLQNAPMFKRVGPNAM-RGRGIGTARGRATIMRAN-ARRGRGVPAAR 123
Query: 125 GV 126
G+
Sbjct: 124 GI 125
>gi|409080651|gb|EKM81011.1| hypothetical protein AGABI1DRAFT_112714 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197565|gb|EKV47492.1| hypothetical protein AGABI2DRAFT_192678 [Agaricus bisporus var.
bisporus H97]
Length = 128
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 91/123 (73%), Gaps = 3/123 (2%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
LG+PVKLLHE+ GH++TVELK+G+LYRG + E EDN N L++IT T +DG+VSQL+ V+
Sbjct: 6 LGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 65
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPG- 123
IRGS +RF ++PDML+NAPMFKR+ + IG RGRA MRA A GRGA P
Sbjct: 66 IRGSMIRFFIVPDMLQNAPMFKRVGPNAM-RGRGIGTARGRATIMRAN-ARRGRGAVPAP 123
Query: 124 RGV 126
RG+
Sbjct: 124 RGI 126
>gi|367024463|ref|XP_003661516.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
gi|347008784|gb|AEO56271.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
Length = 114
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 90/118 (76%), Gaps = 4/118 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ S+GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSSIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGR 118
E V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+A GR
Sbjct: 61 EQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRATVSRARAGGRGR 114
>gi|189199034|ref|XP_001935854.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330913493|ref|XP_003296291.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
gi|187982953|gb|EDU48441.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311331686|gb|EFQ95612.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
Length = 118
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 95/124 (76%), Gaps = 6/124 (4%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA+GH+VT+E+ SGE+YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAAGHIVTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
E V+IRGS VR+ ++PDML+NAPMF+ R +G +G+ RGRA RA+A+ RG
Sbjct: 61 EQVYIRGSHVRYFIVPDMLRNAPMFRSRGTRGRG----VGLARGRATVNRARAST--RGG 114
Query: 121 APGR 124
A GR
Sbjct: 115 AGGR 118
>gi|336363219|gb|EGN91635.1| hypothetical protein SERLA73DRAFT_192176 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384161|gb|EGO25309.1| hypothetical protein SERLADRAFT_465253 [Serpula lacrymans var.
lacrymans S7.9]
Length = 127
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 2/125 (1%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
S LG+PVKLLHE+ GH++TVELK+G+LYRG + E EDN N L++IT T +DG+VSQL+
Sbjct: 3 SVGLGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLD 62
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAA 121
V+IRGS VRF ++PDML+NAPMFKR+ + IG RGRA MRA A GRG
Sbjct: 63 QVYIRGSMVRFFIVPDMLQNAPMFKRVGPNAM-RGRGIGTARGRATIMRAN-ARRGRGVP 120
Query: 122 PGRGV 126
RG+
Sbjct: 121 AARGI 125
>gi|390602523|gb|EIN11916.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 127
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 89/122 (72%), Gaps = 2/122 (1%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
LGIPVKLLHE+ GH++TVELK+G+LYRG + E EDN N L++IT T +DG+VSQL+ V+
Sbjct: 6 LGIPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 65
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGR 124
IRGS VRF ++PDML+NAPMFKR+ + IG RGRA MRA A GRG R
Sbjct: 66 IRGSMVRFFIVPDMLQNAPMFKRVGPNAM-RGRGIGTARGRATIMRAN-ARRGRGVPAPR 123
Query: 125 GV 126
G+
Sbjct: 124 GI 125
>gi|169846820|ref|XP_001830124.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
gi|116508894|gb|EAU91789.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
Length = 126
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 91/123 (73%), Gaps = 5/123 (4%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
LG+PVKLLHE+ GH++TVELK+G+LYRG + E EDN N L++IT T +DG+VSQL+ V+
Sbjct: 6 LGVPVKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVY 65
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPG- 123
IRGS +RF ++PDML+NAPMFKR+ + IG RGRA MRA+ GRG AP
Sbjct: 66 IRGSMIRFFIVPDMLQNAPMFKRVGPNAM-RGRGIGTARGRATIMRAR---RGRGVAPAP 121
Query: 124 RGV 126
RG+
Sbjct: 122 RGI 124
>gi|392594010|gb|EIW83335.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 92/123 (74%), Gaps = 4/123 (3%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
LG+PVKLLHE+ GHV+TVELK+G+LYRG + E EDN N L++IT TA+DG+VSQL+ V+
Sbjct: 4 LGVPVKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTARDGRVSQLDQVY 63
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPG 123
IRGS +RF ++PDML+NAPMFKR+ ++G+ IG RGRA MRA A GRG
Sbjct: 64 IRGSMIRFFIVPDMLQNAPMFKRVGPNAMRGR--GIGTARGRATIMRAN-ARRGRGVPAA 120
Query: 124 RGV 126
R +
Sbjct: 121 RAI 123
>gi|336269505|ref|XP_003349513.1| hypothetical protein SMAC_03101 [Sordaria macrospora k-hell]
gi|380093412|emb|CCC09070.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 116
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 93/121 (76%), Gaps = 6/121 (4%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
E V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+ A GRG+
Sbjct: 61 EQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRATVSRAR--AGGRGS 114
Query: 121 A 121
A
Sbjct: 115 A 115
>gi|340729743|ref|XP_003403155.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
terrestris]
gi|350411432|ref|XP_003489349.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
impatiens]
Length = 142
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 92/124 (74%), Gaps = 6/124 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH +T E +GE+YRG ++E EDN NCQ++NIT T +DG+ +QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGREAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAP- 122
+IRGSK+RF+++PDMLKNAPMFKR + G + GRG++ +RA+A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTA-----GRGKSAILRAQARGRGRGQNQR 116
Query: 123 GRGV 126
GRG
Sbjct: 117 GRGT 120
>gi|367037323|ref|XP_003649042.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
gi|346996303|gb|AEO62706.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
Length = 114
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 90/117 (76%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ S+GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSSIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
E V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+A+ G
Sbjct: 61 EQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRATVSRARASGRG 113
>gi|145344044|ref|XP_001416549.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576775|gb|ABO94842.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 95
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 80/95 (84%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
+ + +G+PVKLLHE+ GHVVTVELK+GE YRG +VE EDNWNCQ+ ++T+ +DGK S++
Sbjct: 1 LGKGVGVPVKLLHESEGHVVTVELKTGETYRGQLVESEDNWNCQMTDVTHVGRDGKESKM 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK 95
EHV+IRGSKVR MVIPDMLK+APMFKR+D + K
Sbjct: 61 EHVYIRGSKVRMMVIPDMLKHAPMFKRIDPKFDPK 95
>gi|444708595|gb|ELW49650.1| Small nuclear ribonucleoprotein Sm D3 [Tupaia chinensis]
Length = 112
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 86/110 (78%), Gaps = 4/110 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+A
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQA 107
>gi|451851728|gb|EMD65026.1| hypothetical protein COCSADRAFT_36375 [Cochliobolus sativus ND90Pr]
gi|451995470|gb|EMD87938.1| hypothetical protein COCHEDRAFT_1183070 [Cochliobolus
heterostrophus C5]
Length = 116
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 92/119 (77%), Gaps = 4/119 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA+GH+VT+E+ SGE+YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAAGHIVTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
E V+IRGS VR+ ++PDML+NAPMF+ R +G +G+ RGRA RA+A+ G G
Sbjct: 61 EQVYIRGSHVRYFIVPDMLRNAPMFRSRGTRGRG----VGLARGRATVNRARASTRGGG 115
>gi|225734040|pdb|3CW1|D Chain D, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734049|pdb|3CW1|S Chain S, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734058|pdb|3CW1|T Chain T, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734067|pdb|3CW1|U Chain U, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 126
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 86/112 (76%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRG K+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGCKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 109
>gi|347841024|emb|CCD55596.1| hypothetical protein [Botryotinia fuckeliana]
Length = 117
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 95/123 (77%), Gaps = 6/123 (4%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GHVVT+E+ +G++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHVVTLEITTGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+ A+GRGA
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNTRGRG----VGLARGRATVSRAR--ASGRGA 114
Query: 121 APG 123
G
Sbjct: 115 PRG 117
>gi|15079335|gb|AAH11510.1| Small nuclear ribonucleoprotein D3 [Mus musculus]
Length = 126
Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 86/112 (76%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRG K+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGRKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 109
>gi|351701822|gb|EHB04741.1| Small nuclear ribonucleoprotein Sm D3, partial [Heterocephalus
glaber]
Length = 136
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 87/113 (76%), Gaps = 4/113 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAA 116
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ + A
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQGSTA 110
>gi|260837085|ref|XP_002613536.1| hypothetical protein BRAFLDRAFT_114009 [Branchiostoma floridae]
gi|229298921|gb|EEN69545.1| hypothetical protein BRAFLDRAFT_114009 [Branchiostoma floridae]
Length = 120
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 83/97 (85%), Gaps = 3/97 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT+E +GE+YRG +VE EDN NCQ+ NIT T +DG+V+QLEHV
Sbjct: 2 SIGVPIKVLHEAEGHIVTLETTTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLEHV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
FIRGSK+RFM++PDMLKNAPMFK ++ KG+ +++G
Sbjct: 62 FIRGSKIRFMILPDMLKNAPMFK---SQQKGQKAAMG 95
>gi|209732182|gb|ACI66960.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 128
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 86/112 (76%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++ EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKILHEAEGHIVTGETNTGEVYRGKLIGAEDNMNCQMSNITVTHRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGTGAGRGKAAILKAQVAA 109
>gi|383853962|ref|XP_003702491.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Megachile
rotundata]
Length = 142
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 92/124 (74%), Gaps = 6/124 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ++NIT T +DG+ +LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGREVELENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAP- 122
+IRGSK+RF+++PDMLKNAPMFKR + G + GRG++ +RA+A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTA-----GRGKSAILRAQARGRGRGQNQR 116
Query: 123 GRGV 126
GRG
Sbjct: 117 GRGT 120
>gi|169614183|ref|XP_001800508.1| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
gi|160707292|gb|EAT82563.2| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
Length = 117
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 92/119 (77%), Gaps = 4/119 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA+GH++T+E+ SGE+YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAAGHIITLEITSGEVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
E V+IRGS VR+ ++PDML+NAPMF+ R +G +G+ RGRA RA+A+ G G
Sbjct: 61 EQVYIRGSHVRYFIVPDMLRNAPMFRSRGTRGRG----VGLARGRATVNRARASTRGGG 115
>gi|346472269|gb|AEO35979.1| hypothetical protein [Amblyomma maculatum]
Length = 122
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 85/106 (80%), Gaps = 4/106 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GHVVT E +GE+YRG +VE EDN NCQ+ NIT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+IRGSK+RFM++PDMLKNAPMFK+ A KS++ GRG++ +
Sbjct: 62 YIRGSKIRFMILPDMLKNAPMFKKAGA----KSATASAGRGKSAIL 103
>gi|388579924|gb|EIM20243.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 123
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 92/121 (76%), Gaps = 4/121 (3%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
+P+KL+HE+ GHVVT+ELKSG++YRG + E EDN N L++IT TA+DG+VSQL+ V+IR
Sbjct: 4 VPIKLVHESLGHVVTIELKSGQMYRGKLQEAEDNLNVSLQDITVTARDGRVSQLDQVYIR 63
Query: 67 GSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGRG 125
GS ++F+V+PDML+NAPMFKR+ +KG+ IG RGRA MRA A GRG P G
Sbjct: 64 GSMIKFLVVPDMLQNAPMFKRVGPNAMKGR--GIGTARGRATIMRAN-ARRGRGGPPTVG 120
Query: 126 V 126
+
Sbjct: 121 I 121
>gi|410932149|ref|XP_003979456.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like, partial
[Takifugu rubripes]
gi|281343886|gb|EFB19470.1| hypothetical protein PANDA_014546 [Ailuropoda melanoleuca]
Length = 106
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQ 106
>gi|407923942|gb|EKG17004.1| hypothetical protein MPH_05830 [Macrophomina phaseolina MS6]
Length = 114
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 90/118 (76%), Gaps = 4/118 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA+GHVVT+EL +G +YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEATGHVVTLELTTGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGR 118
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RGRA RA+ A GR
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRGTRGRG----VGLARGRATVNRARGARGGR 114
>gi|209730588|gb|ACI66163.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 119
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKILHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGTGAGRGKAAILKAQ 106
>gi|440901202|gb|ELR52187.1| Small nuclear ribonucleoprotein Sm D3, partial [Bos grunniens
mutus]
Length = 107
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQ 106
>gi|91084331|ref|XP_972583.1| PREDICTED: similar to AGAP012380-PA [Tribolium castaneum]
Length = 137
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 92/120 (76%), Gaps = 8/120 (6%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ IT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAA-AAGRGAAP 122
+IRGSK+RF+++PDMLKNAPMFK+ ++ + GRG++ +RA+AA GRGA P
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKK-------QTKAGTAGRGKSAILRAQAARGRGRGANP 114
>gi|110758613|ref|XP_001120143.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Apis mellifera]
gi|380017261|ref|XP_003692578.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Apis florea]
gi|380017263|ref|XP_003692579.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 2
[Apis florea]
Length = 142
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 90/124 (72%), Gaps = 6/124 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH +T E +GE+YRG ++E EDN NCQ++NIT T +DG QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGHEVQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAP- 122
+IRGSK+RF+++PDMLKNAPMFKR + G + GRG++ +RA+A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRPGGKGSGTA-----GRGKSAILRAQARGRGRGQNQR 116
Query: 123 GRGV 126
GRG
Sbjct: 117 GRGT 120
>gi|402224280|gb|EJU04343.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 127
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 95/128 (74%), Gaps = 5/128 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++G+P+KLLHE+ GHV+TVELK+G+ YRG + + ED+ N L +IT T +DG+VSQL
Sbjct: 1 MASTIGVPIKLLHESLGHVITVELKTGQTYRGKLADAEDSLNISLRDITVTGRDGRVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+ V+IRGS VRF ++PDML+NAPMFKR+ +KG+ IG RGRA MRA A GRG
Sbjct: 61 DSVYIRGSMVRFFIVPDMLQNAPMFKRVGPNAMKGR--GIGTARGRATIMRAN-ARRGRG 117
Query: 120 A-APGRGV 126
A P RG+
Sbjct: 118 APQPARGI 125
>gi|171693559|ref|XP_001911704.1| hypothetical protein [Podospora anserina S mat+]
gi|170946728|emb|CAP73532.1| unnamed protein product [Podospora anserina S mat+]
Length = 118
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 89/114 (78%), Gaps = 4/114 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAA 114
E V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+A+
Sbjct: 61 EQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRATVSRARAS 110
>gi|440634941|gb|ELR04860.1| small nuclear ribonucleoprotein D3 [Geomyces destructans 20631-21]
Length = 117
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 94/123 (76%), Gaps = 6/123 (4%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GHVVT+E+ SG++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+ V+IRGS VRF ++PDML+NAPMF+ + +G +G+ RGRA RA+ A+GRGA
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRGVKGRG----VGLARGRATVSRAR--ASGRGA 114
Query: 121 APG 123
G
Sbjct: 115 PRG 117
>gi|310799322|gb|EFQ34215.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 115
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 90/117 (76%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+A+ G
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGMARGRATVSRARASGRG 113
>gi|302909812|ref|XP_003050156.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
gi|256731093|gb|EEU44443.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
Length = 384
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 90/118 (76%), Gaps = 4/118 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG +++ EDN N QL++IT TA+DG+VS L
Sbjct: 271 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHL 330
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGR 118
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+A GR
Sbjct: 331 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRATVSRARAGGRGR 384
>gi|395753131|ref|XP_003779548.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 4 [Pongo
abelii]
Length = 120
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQ 106
>gi|354492024|ref|XP_003508152.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cricetulus
griseus]
Length = 126
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQ 106
>gi|427786245|gb|JAA58574.1| Putative small nuclear ribonucleoprotein sm d3 [Rhipicephalus
pulchellus]
Length = 122
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 85/106 (80%), Gaps = 4/106 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG +VE EDN NCQ+ NIT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMCNITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+IRGSK+RFM++PDMLKNAPMFK+ A KS++ GRG++ +
Sbjct: 62 YIRGSKIRFMILPDMLKNAPMFKKAGA----KSATASAGRGKSAIL 103
>gi|340519305|gb|EGR49544.1| predicted protein [Trichoderma reesei QM6a]
gi|358388432|gb|EHK26025.1| hypothetical protein TRIVIDRAFT_27430, partial [Trichoderma virens
Gv29-8]
gi|358392460|gb|EHK41864.1| hypothetical protein TRIATDRAFT_134655, partial [Trichoderma
atroviride IMI 206040]
Length = 114
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 92/119 (77%), Gaps = 5/119 (4%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH++T+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+ A+ GRG
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRATVSRAR-ASGGRG 114
>gi|194382308|dbj|BAG58909.1| unnamed protein product [Homo sapiens]
Length = 120
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQ 106
>gi|154299390|ref|XP_001550114.1| hypothetical protein BC1G_10957 [Botryotinia fuckeliana B05.10]
Length = 117
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 94/123 (76%), Gaps = 6/123 (4%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GHVVT+E+ +G++YRG ++ EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHVVTLEITTGQVYRGKLLGAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+ A+GRGA
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNTRGRG----VGLARGRATVSRAR--ASGRGA 114
Query: 121 APG 123
G
Sbjct: 115 PRG 117
>gi|322787518|gb|EFZ13606.1| hypothetical protein SINV_14465 [Solenopsis invicta]
Length = 115
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 5/109 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH +T E +GE+YRG ++E EDN NCQ++NIT T +DG+V+QLE+V
Sbjct: 12 SIGVPIKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENV 71
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPMFKR G S GRG++ +RA+
Sbjct: 72 YIRGSKIRFLILPDMLKNAPMFKR-----PGGKGSGTAGRGKSAILRAQ 115
>gi|328866082|gb|EGG14468.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 170
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 84/98 (85%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+PVK+LHEA H+VT+ELK+GE+YRG++++ EDN NC+L+ +T TA+DGK SQLE +
Sbjct: 2 SIGVPVKILHEADSHIVTIELKNGEMYRGTLMQSEDNMNCKLKIVTMTARDGKQSQLEQI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV 101
+IRGSK+RF+++PD+LKNAPMFKR+D + + S+G+
Sbjct: 62 YIRGSKIRFIILPDILKNAPMFKRIDGKTVLRGKSLGI 99
>gi|443687679|gb|ELT90579.1| hypothetical protein CAPTEDRAFT_221674 [Capitella teleta]
Length = 135
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 83/106 (78%), Gaps = 2/106 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E SGE+YRG +VE EDN NCQ+ NIT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETTSGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
FIRGSK+RF+++PDMLKNAPMFKR+ KG GRG++ +
Sbjct: 62 FIRGSKIRFLILPDMLKNAPMFKRVVG--KGGHPGATAGRGKSAIL 105
>gi|291235317|ref|XP_002737590.1| PREDICTED: small nuclear ribonucleoprotein polypeptide D3-like
[Saccoglossus kowalevskii]
Length = 123
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 85/107 (79%), Gaps = 7/107 (6%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E SGE+YRG ++E EDN NCQ+ NIT T +DG+VSQLEHV
Sbjct: 2 SIGVPIKVLHEAEGHIITCETSSGEVYRGKLIEAEDNMNCQMANITVTYRDGRVSQLEHV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMR 110
+IRGSK+RF+++PDMLKNAPMFK+ A KG + GRG++ ++
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKK--AGTKGTA-----GRGKSALLK 101
>gi|115497280|ref|NP_001069947.1| small nuclear ribonucleoprotein Sm D3 [Bos taurus]
gi|86437979|gb|AAI12525.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Bos taurus]
Length = 125
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 86/112 (76%), Gaps = 5/112 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG ++QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-LAQLEQV 60
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 61 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 108
>gi|440790083|gb|ELR11371.1| LSM domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 136
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+K+ HEA GH VT+ELK+GE+YRG + + EDN NCQ+ NI YTA+DG+V+ LE V
Sbjct: 2 SIGIPIKVFHEAKGHTVTIELKTGEVYRGQLGDTEDNMNCQMANIQYTARDGRVTNLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV 107
+IRGSK+RFM++PDMLKNAPMF+ +D + K + G G +A+
Sbjct: 62 YIRGSKIRFMILPDMLKNAPMFRNVDPK-KAQGRGKGAGVQKAI 104
>gi|322694233|gb|EFY86068.1| small nuclear ribonucleoprotein Sm D3 [Metarhizium acridum CQMa
102]
Length = 113
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 88/113 (77%), Gaps = 4/113 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG +++ EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
E V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA+A
Sbjct: 61 EQVYIRGSHVRFFIVPDMLRNAPMFRSRNLRGRG----VGLARGRATVSRARA 109
>gi|405976315|gb|EKC40827.1| Small nuclear ribonucleoprotein Sm D3 [Crassostrea gigas]
Length = 131
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 87/111 (78%), Gaps = 6/111 (5%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG +VE EDN NCQ+ IT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETTTGEVYRGKLVEAEDNMNCQMSAITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAA 114
++RGSK+RF+++PDMLKNAPMFK R++GK S RG++ +R +AA
Sbjct: 62 YLRGSKIRFLILPDMLKNAPMFK----RVQGKGGS--ANRGKSAILRTQAA 106
>gi|393244822|gb|EJD52333.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 126
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 84/109 (77%), Gaps = 1/109 (0%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ +LG+PVKLLHEA GH++TVELK+G+LYRG ++E ED+ N L++IT T +DG+VSQL
Sbjct: 1 MTSTLGVPVKLLHEAMGHIITVELKTGQLYRGKLLEAEDSLNISLKDITVTGRDGRVSQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+ V+IRGS +RF ++PDML+NAPMFKR+ + IG RGRA M
Sbjct: 61 DQVYIRGSMIRFFIVPDMLQNAPMFKRVGPNAM-RGRGIGTARGRATIM 108
>gi|241690470|ref|XP_002411764.1| small nuclear ribonucleoprotein Sm D3, putative [Ixodes scapularis]
gi|215504603|gb|EEC14097.1| small nuclear ribonucleoprotein Sm D3, putative [Ixodes scapularis]
Length = 122
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 84/106 (79%), Gaps = 4/106 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG +VE EDN NCQ+ NIT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+IRGSK+RF+++PDMLKNAPMFK+ K+++ GRG++ +
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKAGT----KTATASAGRGKSAIL 103
>gi|225714524|gb|ACO13108.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290462385|gb|ADD24240.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290563060|gb|ADD38924.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
Length = 138
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 92/121 (76%), Gaps = 3/121 (2%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ +++ T +DG VSQLE++
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAA-AAGRGAAP 122
+IRGSK+RFM++PDMLKNAPMFK + R +G S+ GRG++ +R +AA GR P
Sbjct: 62 YIRGSKIRFMILPDMLKNAPMFKNM-GRGRG-SAPASAGRGKSAILREQAARGRGRAGPP 119
Query: 123 G 123
G
Sbjct: 120 G 120
>gi|378726753|gb|EHY53212.1| small nuclear ribonucleoprotein D3 [Exophiala dermatitidis
NIH/UT8656]
Length = 116
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 88/113 (77%), Gaps = 4/113 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+EL SG++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLELTSGQVYRGKLLEAEDNMNVQLKDITATARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RGRA RA+A
Sbjct: 64 DQVYIRGSHVRFFIVPDMLRNAPMFRTRGIRGRG----VGLARGRATVNRARA 112
>gi|353236668|emb|CCA68658.1| related to small nuclear ribonucleoprotein sm d3 [Piriformospora
indica DSM 11827]
Length = 129
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 86/110 (78%), Gaps = 3/110 (2%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ +LG+PVKLLHEA GHV+TVELK+G+LYRG + E ED+ N L++IT T +DG++SQL
Sbjct: 1 MTSTLGVPVKLLHEALGHVITVELKTGQLYRGKLAEAEDSLNISLKDITVTGRDGRISQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAM 109
+ V+IRGS +RF ++PDML+NAPMFKR+ ++G+ IG RGRA M
Sbjct: 61 DQVYIRGSMIRFFIVPDMLQNAPMFKRVGPNAMRGR--GIGTARGRATIM 108
>gi|398407783|ref|XP_003855357.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici IPO323]
gi|339475241|gb|EGP90333.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici IPO323]
Length = 119
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 87/120 (72%), Gaps = 4/120 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA+GH VTVE+ SG+ YRG ++E EDN N QLENI T +DG+V+ L
Sbjct: 1 MTSTIGIPIKLLNEATGHQVTVEITSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+ V+IRGS VR ++PDML+NAPMF+ R +G +G+ RGRA RA+ + RGA
Sbjct: 61 DRVYIRGSHVRLFIVPDMLRNAPMFRSKGVRGRG----VGLARGRATVNRARGSGGPRGA 116
>gi|321456914|gb|EFX68011.1| hypothetical protein DAPPUDRAFT_63450 [Daphnia pulex]
Length = 118
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 88/109 (80%), Gaps = 2/109 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG +VE EDN NCQ+ NIT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETNTGEIYRGKLVEAEDNMNCQMTNITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPMFKR A+ +++ GRG++ +RA+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRQGAKAASSAAA--SGRGKSAILRAQ 108
>gi|428184458|gb|EKX53313.1| hypothetical protein GUITHDRAFT_84386 [Guillardia theta CCMP2712]
Length = 130
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+PVKLLHEA H++TVELKSGELYRG++ E EDN NC + N+T T +DG +S LE V
Sbjct: 2 SIGVPVKLLHEAESHIITVELKSGELYRGTLQEAEDNMNCNMTNVTMTGRDGSISTLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
FIRG +RF+++PD+LKNAPMFKR+D + +G GVG GR+
Sbjct: 62 FIRGGLIRFVILPDILKNAPMFKRIDPK-QGILRGKGVGIGRS 103
>gi|295658451|ref|XP_002789786.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|225682914|gb|EEH21198.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226282930|gb|EEH38496.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226290365|gb|EEH45849.1| small nuclear ribonucleoprotein Sm D3 [Paracoccidioides
brasiliensis Pb18]
gi|327350126|gb|EGE78983.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 116
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 88/117 (75%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RGRA RA+ G
Sbjct: 64 DQVYIRGSHVRFFIVPDMLRNAPMFRSRGQRGRG----VGLARGRATVNRARGQRRG 116
>gi|119174174|ref|XP_001239448.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|258569991|ref|XP_002543799.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|303314089|ref|XP_003067053.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237904069|gb|EEP78470.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|240106721|gb|EER24908.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037285|gb|EFW19222.1| small nuclear ribonucleoprotein Sm D3 [Coccidioides posadasii str.
Silveira]
gi|392869636|gb|EAS28151.2| small nuclear ribonucleoprotein Sm D3 [Coccidioides immitis RS]
Length = 116
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 88/117 (75%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RGRA RA+ G
Sbjct: 64 DQVYIRGSHVRFFIVPDMLRNAPMFRTRGQRGRG----VGLARGRATVNRARGQRRG 116
>gi|167524150|ref|XP_001746411.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775173|gb|EDQ88798.1| predicted protein [Monosiga brevicollis MX1]
Length = 325
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 84/109 (77%), Gaps = 6/109 (5%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
+ +P+K++HE GHVVT+ELK+GE+YRG +VE EDN N QL ++T+TA+DG+V+ +E V+
Sbjct: 175 ISVPIKIMHEGEGHVVTIELKNGEIYRGKLVEAEDNMNSQLRDVTFTARDGQVAHVESVY 234
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
IRGSK+RF V+PDMLKNAPMFKR A+ + GRG+ +RA+A
Sbjct: 235 IRGSKIRFFVLPDMLKNAPMFKRASAK------GMTAGRGKTAILRAQA 277
>gi|270008821|gb|EFA05269.1| hypothetical protein TcasGA2_TC015424 [Tribolium castaneum]
Length = 152
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 95/140 (67%), Gaps = 21/140 (15%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ IT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA-------- 115
+IRGSK+RF+++PDMLKNAPMFK+ ++ + GRG++ +RA+ A
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKK-------QTKAGTAGRGKSAILRAQGLAVLRVEFWL 114
Query: 116 ----AGRGAAPGRGVVPPVR 131
A RG GRG P VR
Sbjct: 115 IVFSAARGR--GRGANPAVR 132
>gi|392577030|gb|EIW70160.1| hypothetical protein TREMEDRAFT_38820 [Tremella mesenterica DSM
1558]
Length = 124
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 88/111 (79%), Gaps = 3/111 (2%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
+LG+PVKLLHE+ GHVVTVELK+GE+YRG ++E EDN N L++IT TA+DG+VSQ++ V
Sbjct: 3 NLGVPVKLLHESLGHVVTVELKTGEMYRGKLMEAEDNLNIALKDITVTARDGRVSQMDMV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKA 113
+IRGS +RF+++PD+L +APMFKR+ ++G+ IG RGRA RA A
Sbjct: 63 YIRGSMIRFVIVPDLLSSAPMFKRVGPNAMRGR--GIGAARGRATIQRANA 111
>gi|116206378|ref|XP_001228998.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183079|gb|EAQ90547.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 115
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 84/106 (79%), Gaps = 4/106 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
E V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA
Sbjct: 61 EQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRA 102
>gi|85102544|ref|XP_961352.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
gi|12718393|emb|CAC28701.1| probable small nuclear ribonucleoprotein SM D3 [Neurospora crassa]
gi|28922896|gb|EAA32116.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
Length = 116
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 84/106 (79%), Gaps = 4/106 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
E V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA
Sbjct: 61 EQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRA 102
>gi|403373657|gb|EJY86747.1| Small nuclear ribonucleoprotein [Oxytricha trifallax]
Length = 692
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 61/106 (57%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+KLLHEA HV+TVELKSGELYRG ++E ED N +L+++ T KDG+ L+ V
Sbjct: 2 SIGVPIKLLHEAENHVITVELKSGELYRGYLMEAEDTMNMRLDDVYVTGKDGRQYHLDQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRL-DARIKGKSSSIGVGRGRAVA 108
F+RGS+VRF++IPDMLKN+PMFKR+ + KGK++ + GRGR +A
Sbjct: 62 FVRGSQVRFIIIPDMLKNSPMFKRIANQAKKGKNALLAKGRGRGIA 107
>gi|402079014|gb|EJT74279.1| small nuclear ribonucleoprotein Sm D3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 130
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 85/111 (76%), Gaps = 4/111 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH++T+E+ +G+ YRG ++E EDN N QL +IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIITLEITTGQTYRGKLIEAEDNMNIQLRDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRA 111
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRATVNRA 107
>gi|154286938|ref|XP_001544264.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407905|gb|EDN03446.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|225555382|gb|EEH03674.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus
G186AR]
gi|240273870|gb|EER37389.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325094696|gb|EGC48006.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus H88]
Length = 116
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 88/117 (75%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEILSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RGRA RA+ G
Sbjct: 64 DQVYIRGSHVRFFIVPDMLRNAPMFRSRGQRGRG----VGLARGRATVNRARGQRRG 116
>gi|58264244|ref|XP_569278.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134107716|ref|XP_777469.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|321248376|ref|XP_003191109.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|50260161|gb|EAL22822.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223928|gb|AAW41971.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457576|gb|ADV19322.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118776|gb|AFR93550.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 124
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
+LG+PVKLLHE+ GH++TVELK+GE+YRG ++E ED N L IT TA+DG+VSQLE V
Sbjct: 3 NLGVPVKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITVTARDGRVSQLEQV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKA 113
+IRGS +RF+++PD+L APMFKR+ ++G+ IG RGRA RA A
Sbjct: 63 YIRGSMIRFIIVPDLLAQAPMFKRIGPNAMRGR--GIGAARGRATIQRANA 111
>gi|212538165|ref|XP_002149238.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|242807429|ref|XP_002484954.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
gi|210068980|gb|EEA23071.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|218715579|gb|EED15001.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 116
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 88/117 (75%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RG+A RA+ G
Sbjct: 64 DQVYIRGSHVRFFIVPDMLRNAPMFRTRGQRGRG----VGLARGKATVNRARGQRRG 116
>gi|320589183|gb|EFX01645.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 116
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 84/106 (79%), Gaps = 4/106 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGRLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
E V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA
Sbjct: 61 EQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRA 102
>gi|345560308|gb|EGX43433.1| hypothetical protein AOL_s00215g169 [Arthrobotrys oligospora ATCC
24927]
Length = 123
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 84/110 (76%), Gaps = 4/110 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+KLL E+ GHVVT+EL SG++YRG ++E EDN N QL++IT TA+DG+VS L+ V
Sbjct: 3 SIGIPLKLLGESQGHVVTLELTSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+IRGS VRF ++PDML+NAPMF+ R +G +G+ RGRA RAK
Sbjct: 63 YIRGSHVRFFIVPDMLRNAPMFRSRAVRGRG----VGMARGRATVNRAKT 108
>gi|332376959|gb|AEE63619.1| unknown [Dendroctonus ponderosae]
Length = 138
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 86/112 (76%), Gaps = 9/112 (8%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LH+A GH+VT E +GE+YRG ++E EDN NCQL IT T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHDAEGHIVTCETITGEVYRGKLIEAEDNMNCQLTQITVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV-GRGRAVAMRAKAA 114
+IRGSK+RF+++PDMLKNAPMFK K + GV GRG++ +RA+ A
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFK--------KQTKAGVAGRGKSGILRAQVA 105
>gi|357631535|gb|EHJ79005.1| hypothetical protein KGM_15381 [Danaus plexippus]
Length = 130
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 84/109 (77%), Gaps = 7/109 (6%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GHVVT E +GE+YRG ++E EDN NCQ+ +T T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPMFKR + + GRG++ +RA+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKR-------QGNKPTAGRGKSAILRAQ 103
>gi|389644246|ref|XP_003719755.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|351639524|gb|EHA47388.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|440466514|gb|ELQ35778.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae Y34]
gi|440477082|gb|ELQ58226.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae P131]
Length = 119
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 85/111 (76%), Gaps = 4/111 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH++T+E+ +G+ YRG +++ EDN N QL +IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIITLEITTGQTYRGKLIDAEDNMNIQLRDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRA 111
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA RA
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRATVNRA 107
>gi|255948872|ref|XP_002565203.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592220|emb|CAP98547.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|425774880|gb|EKV13173.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum PHI26]
gi|425780976|gb|EKV18959.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum Pd1]
Length = 117
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 89/119 (74%), Gaps = 5/119 (4%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG +YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTIEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRG 119
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RG+A RA+ GRG
Sbjct: 64 DQVYIRGSHVRFFIVPDMLRNAPMFRTRGQRGRG----VGLARGKATVQRAR-GQRGRG 117
>gi|24652901|ref|NP_725106.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|194883784|ref|XP_001975977.1| GG20251 [Drosophila erecta]
gi|195333626|ref|XP_002033491.1| GM21338 [Drosophila sechellia]
gi|195485512|ref|XP_002091120.1| GE12410 [Drosophila yakuba]
gi|195551839|ref|XP_002076307.1| GD15400 [Drosophila simulans]
gi|13124554|sp|O44437.1|SMD3_DROME RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|2708715|gb|AAB92621.1| small nuclear ribonucleoprotein Sm D3 [Drosophila melanogaster]
gi|7303511|gb|AAF58566.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|21064481|gb|AAM29470.1| RE39820p [Drosophila melanogaster]
gi|190659164|gb|EDV56377.1| GG20251 [Drosophila erecta]
gi|194125461|gb|EDW47504.1| GM21338 [Drosophila sechellia]
gi|194177221|gb|EDW90832.1| GE12410 [Drosophila yakuba]
gi|194201956|gb|EDX15532.1| GD15400 [Drosophila simulans]
gi|220948494|gb|ACL86790.1| SmD3-PA [synthetic construct]
gi|220957770|gb|ACL91428.1| SmD3-PA [synthetic construct]
Length = 151
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 85/110 (77%), Gaps = 4/110 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ+ IT T +DG+ + LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+IRGSK+RF+++PDMLKNAPMFK+ + G ++ GRG+A +RA+A
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTA----GRGKAAILRAQA 107
>gi|389610295|dbj|BAM18759.1| small ribonucleoprotein particle protein SmD3 [Papilio xuthus]
Length = 130
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 7/109 (6%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GHVVT E +GE+YRG ++E EDN NCQ+ +T T +DG+V+QLE+V
Sbjct: 2 SIGVPIKVLHEAEGHVVTCETITGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPMFKR +G S GRG++ +RA+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKR-----QGNKPS--AGRGKSAILRAQ 103
>gi|46123175|ref|XP_386141.1| hypothetical protein FG05965.1 [Gibberella zeae PH-1]
Length = 365
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 84/107 (78%), Gaps = 4/107 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG +++ EDN N QL++IT TA+DG+VS L
Sbjct: 251 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHL 310
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV 107
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA
Sbjct: 311 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRAT 353
>gi|41054297|ref|NP_956054.1| small nuclear ribonucleoprotein D3 polypeptide, like [Danio rerio]
gi|28278495|gb|AAH45929.1| Small nuclear ribonucleoprotein D3 polypeptide, like [Danio rerio]
gi|182889668|gb|AAI65492.1| Snrpd3l protein [Danio rerio]
Length = 128
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+VSQLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVSQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGAGAGRGKAAILKAQVAA 109
>gi|315044655|ref|XP_003171703.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|327297404|ref|XP_003233396.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|311344046|gb|EFR03249.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|326464702|gb|EGD90155.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|326472436|gb|EGD96445.1| pre-mRNA splicing factor [Trichophyton tonsurans CBS 112818]
gi|326481659|gb|EGE05669.1| small nuclear ribonucleoprotein D3 polypeptide [Trichophyton
equinum CBS 127.97]
Length = 116
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG +YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS V+F ++PDML+NAPMF+ R +G +G+ RGRA RA+ G
Sbjct: 64 DQVYIRGSHVKFFIVPDMLRNAPMFRSRGQRGRG----VGLARGRATVNRARGQRRG 116
>gi|115492327|ref|XP_001210791.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|169771623|ref|XP_001820281.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae RIB40]
gi|238485796|ref|XP_002374136.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|83768140|dbj|BAE58279.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|114197651|gb|EAU39351.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|220699015|gb|EED55354.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|391871729|gb|EIT80886.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae 3.042]
Length = 116
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG +YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RG+A RA+ G
Sbjct: 64 DQVYIRGSHVRFFIVPDMLRNAPMFRSRGQRGRG----VGLARGKATVQRARGQRRG 116
>gi|67523101|ref|XP_659611.1| hypothetical protein AN2007.2 [Aspergillus nidulans FGSC A4]
gi|40745683|gb|EAA64839.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487374|tpe|CBF86001.1| TPA: small nuclear ribonucleoprotein SmD3, putative
(AFU_orthologue; AFUA_4G10240) [Aspergillus nidulans
FGSC A4]
Length = 116
Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG +YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RG+A RA+ G
Sbjct: 64 DQVYIRGSHVRFFIVPDMLRNAPMFRTRGQRGRG----VGLARGKATVQRARGQRRG 116
>gi|170038404|ref|XP_001847040.1| small nuclear ribonucleoprotein SM D3 [Culex quinquefasciatus]
gi|167882083|gb|EDS45466.1| small nuclear ribonucleoprotein SM D3 [Culex quinquefasciatus]
Length = 155
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 85/111 (76%), Gaps = 6/111 (5%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ +T T +DG+ + LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQLTVTFRDGRTANLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAA 114
+IRGSK+RF+++PDMLKNAPMFK+ A+ S GRG++ +RA+AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQGAK------SGTAGRGKSAILRAQAA 106
>gi|452985910|gb|EME85666.1| hypothetical protein MYCFIDRAFT_52885 [Pseudocercospora fijiensis
CIRAD86]
Length = 115
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 81/107 (75%), Gaps = 4/107 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA+GH VTVE+ SG+ YRG ++E EDN NCQLENI T +DG+V+ L
Sbjct: 1 MTSTIGIPIKLLNEATGHQVTVEIDSGQTYRGRLIEAEDNMNCQLENINVTQRDGRVTHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV 107
+ V+IRGS VR ++PDML+NAPMFK R +G +G+ RGRA
Sbjct: 61 DRVYIRGSHVRLFIVPDMLRNAPMFKSRGTRGRG----VGLARGRAT 103
>gi|412990430|emb|CCO19748.1| Small nuclear ribonucleoprotein Sm D3 [Bathycoccus prasinos]
Length = 131
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 82/117 (70%), Gaps = 24/117 (20%)
Query: 1 MSRSLGIPVKLLHEASGHVVTV------------------------ELKSGELYRGSMVE 36
+ + +GIPVKL+HE+ GHV+TV ELKSGELYRG++VE
Sbjct: 6 LGKGVGIPVKLMHESEGHVITVPSLHSFLSFSLSLTKTFLSCAQQVELKSGELYRGTLVE 65
Query: 37 CEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIK 93
EDNWNCQL N+++TA+DGK S LE+ ++RGSK+R +++PDMLKNAPMFK++D R K
Sbjct: 66 AEDNWNCQLTNVSHTARDGKHSSLENCYLRGSKIRMVIVPDMLKNAPMFKKIDPRTK 122
>gi|195455442|ref|XP_002074722.1| GK23009 [Drosophila willistoni]
gi|194170807|gb|EDW85708.1| GK23009 [Drosophila willistoni]
Length = 150
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 84/109 (77%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ+ IT T +DG+ + LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPMFK+ + G ++ GRG+A +RA+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTA----GRGKAAILRAQ 106
>gi|195384527|ref|XP_002050966.1| GJ19907 [Drosophila virilis]
gi|194145763|gb|EDW62159.1| GJ19907 [Drosophila virilis]
Length = 151
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 84/109 (77%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ+ IT T +DG+ + LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPMFK+ + G ++ GRG+A +RA+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTA----GRGKAAILRAQ 106
>gi|195030021|ref|XP_001987867.1| GH19718 [Drosophila grimshawi]
gi|195120652|ref|XP_002004838.1| GI20137 [Drosophila mojavensis]
gi|193903867|gb|EDW02734.1| GH19718 [Drosophila grimshawi]
gi|193909906|gb|EDW08773.1| GI20137 [Drosophila mojavensis]
Length = 151
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 84/109 (77%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ+ IT T +DG+ + LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPMFK+ + G ++ GRG+A +RA+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTA----GRGKAAILRAQ 106
>gi|296810002|ref|XP_002845339.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
gi|238842727|gb|EEQ32389.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
Length = 116
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHV+T+E+ SG +YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVITLEITSGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS V+F ++PDML+NAPMF+ R +G +G+ RGRA RA+ G
Sbjct: 64 DQVYIRGSHVKFFIVPDMLRNAPMFRSRGQRGRG----VGLARGRATVNRARGQRRG 116
>gi|384497430|gb|EIE87921.1| hypothetical protein RO3G_12632 [Rhizopus delemar RA 99-880]
Length = 129
Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 74/83 (89%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G+P+KLLHEA GH++++ELK+G+LYRG ++E EDN N QL++IT TA+DG+VSQL+ V
Sbjct: 2 TIGVPIKLLHEAQGHIISLELKTGQLYRGKLLEAEDNMNIQLKDITVTARDGRVSQLDQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
+IRGS VRF ++PDMLKNAPMFK
Sbjct: 62 YIRGSHVRFFIVPDMLKNAPMFK 84
>gi|328856039|gb|EGG05162.1| hypothetical protein MELLADRAFT_48913 [Melampsora larici-populina
98AG31]
Length = 138
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 85/113 (75%), Gaps = 3/113 (2%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++G+P KLLHEA GHV+TVELK+G++YRG + + EDN N L++IT T +DG+V+QL
Sbjct: 1 MTSNIGVPTKLLHEALGHVITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDGRVTQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+ V+IRG +R VIPDML+NAPMFKR +KG+ IG RGRA RA+A
Sbjct: 61 DQVYIRGPMIRLYVIPDMLQNAPMFKR-GTGVKGR--GIGTARGRATIQRAQA 110
>gi|400601331|gb|EJP68974.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 115
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 84/107 (78%), Gaps = 4/107 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH++T+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV 107
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSSNLRGRG----VGMARGRAT 103
>gi|308321147|gb|ADO27727.1| small nuclear ribonucleoprotein sm d3 [Ictalurus furcatus]
Length = 128
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K +K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLK----SVKNKNQGAGAGRGKAAILKAQVAA 109
>gi|242013355|ref|XP_002427375.1| Small nuclear ribonucleoprotein SM D3, putative [Pediculus humanus
corporis]
gi|212511744|gb|EEB14637.1| Small nuclear ribonucleoprotein SM D3, putative [Pediculus humanus
corporis]
Length = 136
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 82/106 (77%), Gaps = 6/106 (5%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ + T +DGKVSQLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMVTCSVTYRDGKVSQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+IRGSK+RF+++PDMLKNAPMFKR+ + S G GRG++ +
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKRV------QKGSGGAGRGKSAIL 101
>gi|342888751|gb|EGU87970.1| hypothetical protein FOXB_01453 [Fusarium oxysporum Fo5176]
gi|408397687|gb|EKJ76827.1| hypothetical protein FPSE_03013 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 84/106 (79%), Gaps = 4/106 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG +++ EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRA 102
>gi|324540294|gb|ADY49583.1| Small nuclear ribonucleoprotein Sm D3, partial [Ascaris suum]
Length = 143
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 84/118 (71%), Gaps = 5/118 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G+P+K+LHEA GH+VT+E GE+YRG ++E EDN NCQ+ ++ T +DG+ QL++V
Sbjct: 3 AIGVPIKILHEAEGHIVTLETTIGEVYRGKLIEAEDNMNCQMSDVNVTYRDGRTHQLDNV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAA 121
FIRGSK+RFM++PDMLKNAPMFK + G++ VG G +AA GRG +
Sbjct: 63 FIRGSKIRFMILPDMLKNAPMFKNI-----GRAQKGAVGMGMGDNRDGRAAFRGRGTS 115
>gi|331242127|ref|XP_003333710.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312700|gb|EFP89291.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 131
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%), Gaps = 3/113 (2%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++G+P KLLHEA GHV+TVELK+G++YRG + + EDN N L++IT T +DG+V+QL
Sbjct: 1 MTSNIGVPTKLLHEALGHVITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDGRVTQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+ V+IRG +R V+PDML+NAPMFKR +KG+ IG RGRA RA+A
Sbjct: 61 DQVYIRGPMIRLYVVPDMLQNAPMFKR-GTGVKGR--GIGTARGRATIQRAQA 110
>gi|195148972|ref|XP_002015436.1| GL11081 [Drosophila persimilis]
gi|198455755|ref|XP_002138132.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
gi|194109283|gb|EDW31326.1| GL11081 [Drosophila persimilis]
gi|198135383|gb|EDY68690.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
Length = 150
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 83/109 (76%), Gaps = 4/109 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ+ IT T +DG+ LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTGNLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGSK+RF+++PDMLKNAPMFK+ + G ++ GRG+A +RA+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTA----GRGKAAILRAQ 106
>gi|391342640|ref|XP_003745624.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Metaseiulus
occidentalis]
Length = 138
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG +VE EDN NC ++ IT T +DG SQLE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETNTGEVYRGKLVEAEDNMNCHMQGITVTYRDGSTSQLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+IRGSK+RF+++PDMLKNAPMFK+ KG + GRG++ +
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKPPG--KGMQTGAAAGRGKSAIL 105
>gi|340383261|ref|XP_003390136.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Amphimedon
queenslandica]
Length = 131
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 71/83 (85%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+KLLHEA GH+VT+E GE+YRG ++E EDN NCQL+N+T T + G+VSQLE V
Sbjct: 2 SIGIPIKLLHEAEGHIVTLETVMGEIYRGKLLEAEDNMNCQLQNVTVTNRSGQVSQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
F+RGS +RF+++PDMLKNAPMFK
Sbjct: 62 FVRGSMIRFLIVPDMLKNAPMFK 84
>gi|225706764|gb|ACO09228.1| Small nuclear ribonucleoprotein Sm D3 [Osmerus mordax]
gi|225707146|gb|ACO09419.1| Small nuclear ribonucleoprotein Sm D3 [Osmerus mordax]
Length = 127
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 88/112 (78%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ + G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQAAGAGRGKAAILKAQVAA 109
>gi|225716266|gb|ACO13979.1| Small nuclear ribonucleoprotein Sm D3 [Esox lucius]
Length = 127
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGAGAGRGKAAILKAQVAA 109
>gi|70993910|ref|XP_751802.1| small nuclear ribonucleoprotein SmD3 [Aspergillus fumigatus Af293]
gi|119500466|ref|XP_001266990.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|145258404|ref|XP_001402031.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus niger CBS
513.88]
gi|66849436|gb|EAL89764.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus Af293]
gi|119415155|gb|EAW25093.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|134074637|emb|CAK44670.1| unnamed protein product [Aspergillus niger]
gi|159125281|gb|EDP50398.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus A1163]
gi|350632459|gb|EHA20827.1| hypothetical protein ASPNIDRAFT_204683 [Aspergillus niger ATCC
1015]
gi|358370798|dbj|GAA87408.1| small nuclear ribonucleoprotein SmD3 [Aspergillus kawachii IFO
4308]
Length = 116
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG +YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS V+F ++PDML+NAPMF+ R +G +G+ RG+A RA+ G
Sbjct: 64 DQVYIRGSHVKFFIVPDMLRNAPMFRSRGQRGRG----VGLARGKATVQRARGQRRG 116
>gi|453087211|gb|EMF15252.1| Sm-like ribonucleo protein, partial [Mycosphaerella populorum
SO2202]
Length = 115
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 82/106 (77%), Gaps = 4/106 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA+GH VTVE+ SG+ YRG ++E EDN N QLENI T +DG+V+ L
Sbjct: 1 MTSTIGIPIKLLNEATGHQVTVEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
+ V+IRGS VR ++PDML+NAPMF+ +AR +G +G+ RGRA
Sbjct: 61 DRVYIRGSHVRLFIVPDMLRNAPMFRSRNARGRG----VGLARGRA 102
>gi|209732980|gb|ACI67359.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGAGAGRGKAAILKAQVAA 109
>gi|302410425|ref|XP_003003046.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
gi|261358070|gb|EEY20498.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
Length = 154
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 84/107 (78%), Gaps = 4/107 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH++T+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNIQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV 107
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNQRGRG----VGLARGRAT 103
>gi|452822235|gb|EME29256.1| small nuclear ribonucleoprotein D3 [Galdieria sulphuraria]
Length = 125
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 76/93 (81%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+KLLHEA VTVE KSG+LYRG++ + EDN NCQL+ +T T +DGK++ EHV
Sbjct: 2 SVGIPIKLLHEAISQTVTVETKSGDLYRGTLYDAEDNMNCQLKKVTCTGRDGKITPFEHV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS 96
F+RGSK+RF ++PD+L NAPMFKR++A +GK+
Sbjct: 62 FLRGSKIRFFIVPDILANAPMFKRVEAIKEGKT 94
>gi|449302555|gb|EMC98564.1| hypothetical protein BAUCODRAFT_137738 [Baudoinia compniacensis
UAMH 10762]
Length = 116
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 80/107 (74%), Gaps = 4/107 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA+GH VTVE+ SG+ YRG ++E EDN NCQLENI T +DG+V+ L
Sbjct: 1 MTSTIGIPIKLLNEATGHQVTVEIDSGQTYRGKLIEAEDNMNCQLENINVTQRDGRVTHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV 107
+ V+IRGS VR ++PDML+NAPMF++ K +G+ RGRA
Sbjct: 61 DRVYIRGSHVRLFIVPDMLRNAPMFRQR----ANKGRGVGLARGRAT 103
>gi|326428962|gb|EGD74532.1| small nuclear ribonucleoprotein Sm D3 [Salpingoeca sp. ATCC 50818]
Length = 128
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 79/98 (80%), Gaps = 6/98 (6%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
+ +PVKL+HEA GH +T+ELK+GE+YRG ++E EDN N Q+ ++T+TA+DG+V+QL+ V+
Sbjct: 4 VSVPVKLMHEAEGHTITIELKNGEMYRGKLIEAEDNMNSQMRDVTFTARDGQVTQLDTVY 63
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVG 102
IRGSK++F V+PDMLKNAP FKR K +++GVG
Sbjct: 64 IRGSKIKFFVLPDMLKNAPFFKR------AKGAAVGVG 95
>gi|268534544|ref|XP_002632403.1| C. briggsae CBR-SNR-1 protein [Caenorhabditis briggsae]
Length = 136
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 86/136 (63%), Gaps = 11/136 (8%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH VT+E +GE+YRG ++E EDN NCQL T +DG+ QLE+V
Sbjct: 3 SVGVPIKILHEAEGHTVTLETVTGEVYRGKLIEAEDNMNCQLSETIVTFRDGRSHQLENV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV--------GRGRAVAMRAKAAA 115
FIRG+K+RFM++PDMLKNAPMFK + KG +IG+ GRGR A R
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIGRAQKG---AIGMGLGGLDQRGRGRGTAFRRPMGR 119
Query: 116 AGRGAAPGRGVVPPVR 131
G G PP R
Sbjct: 120 GGPRGMSRPGGAPPFR 135
>gi|339251454|ref|XP_003372749.1| putative LSM domain protein [Trichinella spiralis]
gi|316968905|gb|EFV53105.1| putative LSM domain protein [Trichinella spiralis]
Length = 133
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 89/127 (70%), Gaps = 8/127 (6%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
SLG+P+K+LHEA GH+V +E +GE++RG ++E EDN NC + ++T T +DG+V+Q+E V
Sbjct: 2 SLGVPLKILHEAEGHIVMLETTTGEVFRGKLLEAEDNMNCNMTDVTVTYRDGQVAQMEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK-----AAAAGR 118
+IRGSK+RF+++PDMLKNAPMF+ + +KG RG+A A ++K GR
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFRTM---LKGVPKVPAPPRGKAAAFKSKMFCHFKGGRGR 118
Query: 119 GAAPGRG 125
G GRG
Sbjct: 119 GVFSGRG 125
>gi|50344816|ref|NP_001002081.1| small nuclear ribonucleoprotein Sm D3 [Danio rerio]
gi|47938090|gb|AAH71554.1| Small nuclear ribonucleoprotein D3 polypeptide [Danio rerio]
Length = 127
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 88/112 (78%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNVNCQMANITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ + G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNPAAGAGRGKAAILKAQVAA 109
>gi|341886102|gb|EGT42037.1| CBN-SNR-1 protein [Caenorhabditis brenneri]
Length = 136
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 86/136 (63%), Gaps = 11/136 (8%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH VT+E +GE+YRG ++E EDN NCQL T +DG+ QLE+V
Sbjct: 3 SVGVPIKILHEAEGHTVTLETVTGEVYRGKLIEAEDNMNCQLAETIVTFRDGRSHQLENV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV--------GRGRAVAMRAKAAA 115
FIRG+K+RFM++PDMLKNAPMFK + KG +IG+ GRGR A R
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIGRAQKG---AIGMGLGGLDQRGRGRGTAFRRPMGR 119
Query: 116 AGRGAAPGRGVVPPVR 131
G G PP R
Sbjct: 120 GGPRGMSRPGGAPPFR 135
>gi|339251460|ref|XP_003372752.1| putative LSM domain protein [Trichinella spiralis]
gi|316968894|gb|EFV53095.1| putative LSM domain protein [Trichinella spiralis]
Length = 133
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%), Gaps = 4/124 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
SLG+P+K+LHEA GH+V +E +GE++RG ++E EDN NC + ++T T +DG+V+Q++ V
Sbjct: 2 SLGVPLKILHEAEGHIVMLETTTGEVFRGKLLEAEDNMNCNMTDVTVTYRDGQVTQMDQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPG 123
+IRGSK+RF+++PDMLKNAPMFK + +KG RG+A A ++K G G
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKTM---LKGVPKVPAPPRGKAAAFKSKMFCHFEGGR-G 117
Query: 124 RGVV 127
RGV
Sbjct: 118 RGVF 121
>gi|343427423|emb|CBQ70950.1| related to small nuclear ribonucleoprotein sm d3 [Sporisorium
reilianum SRZ2]
Length = 136
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 85/110 (77%), Gaps = 3/110 (2%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++GIPVKL+HEA GHV+TVELK G YRG++ + EDN+N +++IT TA DGK S LE+V
Sbjct: 3 TIGIPVKLIHEAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHLENV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAK 112
+IRG+ +RF+++PDML+ APMFKR+ +KG+ IG RGRA +RA+
Sbjct: 63 YIRGNMLRFIIVPDMLQQAPMFKRIGPNGMKGR--GIGSARGRATILRAQ 110
>gi|58393584|ref|XP_320178.2| AGAP012380-PA [Anopheles gambiae str. PEST]
gi|55234277|gb|EAA00211.2| AGAP012380-PA [Anopheles gambiae str. PEST]
Length = 143
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 78/98 (79%), Gaps = 4/98 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GHVVT E +GE+YRG ++E EDN NCQ+ IT T +DG+V LE+V
Sbjct: 2 SIGVPIKVLHEAEGHVVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVGNLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARI----KGKSS 97
+IRGSK+RF+++PDMLKNAPMFK+ A+ +GKS+
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQGAKTGTAGRGKSA 99
>gi|442762477|gb|JAA73397.1| Putative small nuclear ribonucleoprotein sm d3, partial [Ixodes
ricinus]
Length = 119
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 79/101 (78%), Gaps = 4/101 (3%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+K+LHEA GH+VT E +GE+YRG +VE EDN NCQ+ NIT T +DG+V+QLE+V+IRGS
Sbjct: 4 IKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENVYIRGS 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
K+RF+++PDMLKNAPMFK+ K+++ GRG++ +
Sbjct: 64 KIRFLILPDMLKNAPMFKKAGT----KTATASAGRGKSAIL 100
>gi|452845934|gb|EME47867.1| hypothetical protein DOTSEDRAFT_42182 [Dothistroma septosporum
NZE10]
Length = 115
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 80/108 (74%), Gaps = 4/108 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA+GH VTVE+ SG+ YRG ++E EDN N QLENI T +DG+V+ L
Sbjct: 1 MTSTIGIPIKLLNEATGHQVTVEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVA 108
+ V+IRGS VR ++PDML+NAPMF+ R +G +G+ RGRA
Sbjct: 61 DRVYIRGSHVRLFIVPDMLRNAPMFRSRGTRGRG----VGLARGRATV 104
>gi|239613701|gb|EEQ90688.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 88/124 (70%), Gaps = 11/124 (8%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLK-------NAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+ V+IRGS VRF ++PDML+ NAPMF+ R +G +G+ RGRA RA+
Sbjct: 64 DQVYIRGSHVRFFIVPDMLRYGINITPNAPMFRSRGQRGRG----VGLARGRATVNRARG 119
Query: 114 AAAG 117
G
Sbjct: 120 QRRG 123
>gi|157129367|ref|XP_001661657.1| small nuclear ribonucleoprotein sm d3 [Aedes aegypti]
gi|108872253|gb|EAT36478.1| AAEL011433-PA [Aedes aegypti]
Length = 147
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 73/88 (82%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ +T T +DG+ S LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQLTVTYRDGRTSNLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDAR 91
+IRGSK+RFM++PDMLKNAPMFK+ A+
Sbjct: 62 YIRGSKIRFMILPDMLKNAPMFKKQGAK 89
>gi|320165991|gb|EFW42890.1| small nuclear ribonucleoprotein Sm D3 [Capsaspora owczarzaki ATCC
30864]
Length = 135
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 81/97 (83%), Gaps = 3/97 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G P+K+LHEA GH+VT+ELK+ E+YRG + + EDN NCQLE+IT+T++DG+VS+L+ V
Sbjct: 2 SIGTPIKVLHEAVGHIVTIELKTSEVYRGKLFQVEDNMNCQLEDITFTSRDGQVSRLQQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDAR---IKGKSS 97
+IRGSKVRF ++PDM++++P+F + A+ + GK+S
Sbjct: 62 YIRGSKVRFFIVPDMIRHSPVFAKTSAQRAHLGGKTS 98
>gi|380480731|emb|CCF42263.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 138
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 78/95 (82%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK 95
+ V+IRGS VRF ++PDML+NAPMF+ + R +G+
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGE 95
>gi|164661203|ref|XP_001731724.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
gi|159105625|gb|EDP44510.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
Length = 126
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++GIPVKLLHE GH VT+ELK G YRG + + EDN+N +++I TA+DGK + L+ V
Sbjct: 3 TVGIPVKLLHEGLGHTVTIELKGGATYRGRLFDAEDNFNISMKDIAVTARDGKQTHLDSV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+IRG+ +RFMV+PDML+ APMFKR+ K IG RGRA MRA+A
Sbjct: 63 YIRGNMIRFMVVPDMLQQAPMFKRVGPNAM-KGRGIGSARGRATIMRAQA 111
>gi|194753313|ref|XP_001958958.1| GF12297 [Drosophila ananassae]
gi|190620256|gb|EDV35780.1| GF12297 [Drosophila ananassae]
Length = 151
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 81/106 (76%), Gaps = 4/106 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ+ IT T +DG+ + LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTASLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+IRGSK+RF+++PDMLKNAPMFK+ + G ++ GRG+A +
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTA----GRGKAAIL 103
>gi|209731578|gb|ACI66658.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 85/111 (76%), Gaps = 4/111 (3%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V+
Sbjct: 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQVY 62
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
IRGSK+RF+++PDMLKNAP K + K K+ G GRG+A ++A+ AA
Sbjct: 63 IRGSKIRFLILPDMLKNAPTLKSM----KNKNQGAGAGRGKAAILKAQVAA 109
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 84/110 (76%), Gaps = 3/110 (2%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++GIPVKL+HEA GHV+TVELK G YRG++ + EDN+N +++IT TA DGK S LE+V
Sbjct: 3 TIGIPVKLIHEAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHLENV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAK 112
+IRG+ +RF+++PDML+ APMFKR+ +KG+ IG RGRA +R +
Sbjct: 63 YIRGNMLRFIIVPDMLQQAPMFKRIGPNAMKGR--GIGSARGRATVLRGE 110
>gi|350293601|gb|EGZ74686.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 236
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 84/118 (71%), Gaps = 15/118 (12%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVEC-----------EDNWNCQLENIT 49
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT
Sbjct: 110 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAMLTNALPPKTAEDNMNVQLKDIT 169
Query: 50 YTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV 107
TA+DG+VS LE V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA
Sbjct: 170 VTARDGRVSHLEQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRAT 223
>gi|358055777|dbj|GAA98122.1| hypothetical protein E5Q_04805 [Mixia osmundae IAM 14324]
Length = 128
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 3/114 (2%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS S+GIP KLLHE+ GHV+T+ELK+G+ YRG +++ EDN N + IT T +DG+V+QL
Sbjct: 1 MSASIGIPCKLLHESVGHVITIELKTGQTYRGKLLDAEDNLNISMSQITVTQRDGRVTQL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKA 113
+ V+IRG + F ++PDML +APMFKR +KG+ IG RGRA RA++
Sbjct: 61 DQVYIRGPMINFFIVPDMLAHAPMFKRQGPNALKGR--GIGTARGRATIQRAQS 112
>gi|212538167|ref|XP_002149239.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|210068981|gb|EEA23072.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
Length = 114
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 87/117 (74%), Gaps = 6/117 (5%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG++YRG ++E DN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLE--DNMNVQLKDITVTARDGRVSHL 61
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+ RG+A RA+ G
Sbjct: 62 DQVYIRGSHVRFFIVPDMLRNAPMFRTRGQRGRG----VGLARGKATVNRARGQRRG 114
>gi|388854781|emb|CCF51674.1| related to small nuclear ribonucleoprotein sm d3 [Ustilago hordei]
Length = 134
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++GIPVKL+HEA GHV+TVELK G YRG++ + ED++N ++++T TA DGK S LE++
Sbjct: 3 TIGIPVKLIHEAVGHVITVELKGGACYRGTLYDAEDSFNVAMKDVTATAPDGKQSHLENI 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+IRG+ +RF+++PDML+ APMFKR+ K IG RGRA +RA+A
Sbjct: 63 YIRGNMLRFIIVPDMLQQAPMFKRIGPNAM-KGRGIGSARGRATILRAQA 111
>gi|336473142|gb|EGO61302.1| hypothetical protein NEUTE1DRAFT_107812 [Neurospora tetrasperma
FGSC 2508]
Length = 247
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 84/118 (71%), Gaps = 15/118 (12%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVEC-----------EDNWNCQLENIT 49
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG ++E EDN N QL++IT
Sbjct: 121 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLIEAMLTNALPPKTAEDNMNVQLKDIT 180
Query: 50 YTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV 107
TA+DG+VS LE V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ RGRA
Sbjct: 181 VTARDGRVSHLEQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGLARGRAT 234
>gi|67601489|ref|XP_666403.1| aspartyl protease-like [Cryptosporidium hominis TU502]
gi|54657392|gb|EAL36172.1| aspartyl protease-like [Cryptosporidium hominis]
Length = 128
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 3/124 (2%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++GIP+KLL+E GH+VT+ELKSG+LYRG++ EDN NC LE++ T +DGK LE
Sbjct: 2 TIGIPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSLEQC 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG-VGRGRAVAMRAKAAAAGRGAAP 122
++RGS++RF ++PDMLKNAPMFK L A K ++S +G G +A A R + RG +
Sbjct: 62 YLRGSQIRFCILPDMLKNAPMFK-LAANAKNRASVLGAAGNKKAFAARFISRGTSRGRS- 119
Query: 123 GRGV 126
GRG+
Sbjct: 120 GRGL 123
>gi|196006814|ref|XP_002113273.1| hypothetical protein TRIADDRAFT_8416 [Trichoplax adhaerens]
gi|190583677|gb|EDV23747.1| hypothetical protein TRIADDRAFT_8416, partial [Trichoplax
adhaerens]
Length = 101
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIPVK+LHEA GHV+T+E SGE+YRG + E EDN NCQ+ ++ T +DG+ + L+ +
Sbjct: 2 SIGIPVKILHEAEGHVITLETVSGEVYRGKLSEAEDNMNCQMYSVNVTYRDGRTAYLQQI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIK-GKSS 97
F+RGSKVRF+VIPDMLKNAPMFK+ + + GKS+
Sbjct: 62 FVRGSKVRFIVIPDMLKNAPMFKKTSNKAELGKSA 96
>gi|294653209|gb|ADF28512.1| small nuclear robonucleoprotein SMD3 [Pelinobius muticus]
Length = 122
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 70/82 (85%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
SLG+PVK+ HEA GHVVT+E +GE+YRG +VE EDN NCQ+ ++T T +DG+V QLE++
Sbjct: 2 SLGVPVKVFHEAEGHVVTLETNTGEIYRGRLVEAEDNMNCQMADVTVTYRDGRVGQLENI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMF 85
+IRGSK+RF+++PD LKNAPMF
Sbjct: 62 YIRGSKIRFLILPDTLKNAPMF 83
>gi|17542052|ref|NP_503027.1| Protein SNR-1 [Caenorhabditis elegans]
gi|21542463|sp|Q17348.2|SMD3_CAEEL RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5832794|emb|CAB55132.1| Protein SNR-1 [Caenorhabditis elegans]
Length = 136
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 81/115 (70%), Gaps = 11/115 (9%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT+E +GE+YRG + E EDN NCQL T +DG+ QL++V
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV--------GRGRAVAMR 110
FIRG+K+RFM++PDMLKNAPMFK + KG +IG+ GRGR A R
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIGRAQKG---AIGMGLGGLDQRGRGRGTAFR 114
>gi|170574009|ref|XP_001892634.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|170579971|ref|XP_001895061.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|312076574|ref|XP_003140922.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|158598127|gb|EDP36091.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|158601689|gb|EDP38531.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|307763915|gb|EFO23149.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|402590446|gb|EJW84376.1| small nuclear ribonucleoprotein Sm D3 [Wuchereria bancrofti]
Length = 138
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 84/130 (64%), Gaps = 13/130 (10%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G+P+K+LHEA GHV+T+E GE+YRG + E EDN NCQ+ +T T +DG+ L++V
Sbjct: 3 AIGVPIKILHEAEGHVITLETTIGEVYRGKLNEAEDNMNCQMSEVTVTYRDGRTHHLDNV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG----------RAVAMRAKA 113
FIRGSK+RFM++PDMLKNAPMFK + KG ++G+G G R A R +
Sbjct: 63 FIRGSKIRFMILPDMLKNAPMFKNIGRAQKG---AVGMGMGDNRDGRGLRGRGTAFRGRG 119
Query: 114 AAAGRGAAPG 123
G PG
Sbjct: 120 GPRGNQRGPG 129
>gi|358254548|dbj|GAA55787.1| small nuclear ribonucleoprotein D3 [Clonorchis sinensis]
Length = 715
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/109 (52%), Positives = 82/109 (75%), Gaps = 7/109 (6%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+K+LH+A GHV+T+E +GE++RG +VE EDN N Q+ +I TA+DG+ S L+ V
Sbjct: 2 SVGIPIKVLHDAEGHVITLETVNGEVFRGKLVEAEDNMNIQMADIILTARDGRTSNLQQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKR-LDARIKGKSSSIGVGRGRAVAMRA 111
+IRGSK+RF+++PDMLKN+PM KR L A+ +G GRG+ +RA
Sbjct: 62 YIRGSKIRFLILPDMLKNSPMLKRPLGAK------GLGTGRGKNAMIRA 104
>gi|66362186|ref|XP_628057.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
gi|46227630|gb|EAK88565.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
Length = 143
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 85/120 (70%), Gaps = 2/120 (1%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+E GH+VT+ELKSG+LYRG++ EDN NC LE++ T +DGK L
Sbjct: 21 INMTIGIPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSL 80
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG-VGRGRAVAMRAKAAAAGRG 119
E ++RGS++RF ++PDMLKNAPMFK L A K ++S +G G +A A R + RG
Sbjct: 81 EQCYLRGSQIRFCILPDMLKNAPMFK-LAANAKNRASVLGAAGNKKAFAARFISRGTSRG 139
>gi|240848533|ref|NP_001155808.1| small nuclear ribonucleoprotein Sm D3 [Acyrthosiphon pisum]
gi|239789870|dbj|BAH71532.1| ACYPI009639 [Acyrthosiphon pisum]
Length = 139
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 72/83 (86%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E GE+YRG ++E EDN NCQ+ ++T T +DG+V+Q+E+V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETIDGEVYRGKLIEAEDNMNCQVSHVTVTYRDGRVAQMENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
++RGSKVRF+++PDML+NAPMFK
Sbjct: 62 YVRGSKVRFIILPDMLRNAPMFK 84
>gi|322706526|gb|EFY98106.1| small nuclear ribonucleoprotein Sm D3 [Metarhizium anisopliae ARSEF
23]
Length = 137
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 28/137 (20%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVE------------------------ 36
M+ ++GIP+KLL+EA GH+VT+E+ SG+ YRG +++
Sbjct: 1 MTSTIGIPIKLLNEAQGHIVTLEITSGQTYRGKLLDGTPPLGPLPRNIRTCRVLVLTSRL 60
Query: 37 CEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS 96
EDN N QL++IT TA+DG+VS LE V+IRGS VRF ++PDML+NAPMF+ + R +G
Sbjct: 61 AEDNMNVQLKDITVTARDGRVSHLEQVYIRGSHVRFFIVPDMLRNAPMFRSRNLRGRG-- 118
Query: 97 SSIGVGRGRAVAMRAKA 113
+G+ RGRA RA+A
Sbjct: 119 --VGLARGRATVSRARA 133
>gi|198436795|ref|XP_002126080.1| PREDICTED: similar to Small nuclear ribonucleoprotein Sm D3 (Sm-D3)
(snRNP core protein D3) [Ciona intestinalis]
Length = 130
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 84/109 (77%), Gaps = 8/109 (7%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GHVVT E +GE+YRG ++E EDN N Q++++T T +DG+ +QL+++
Sbjct: 2 SIGVPIKVLHEAEGHVVTCESATGEVYRGKLIEAEDNMNSQMQDVTVTYRDGRTAQLQNI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+IRGS+VRFM++PDMLKNAPM + KG ++ GRG+A ++A+
Sbjct: 62 YIRGSQVRFMILPDMLKNAPMLRHQ----KGGTA----GRGKAAILKAQ 102
>gi|56756683|gb|AAW26514.1| SJCHGC04758 protein [Schistosoma japonicum]
gi|226469480|emb|CAX76570.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469482|emb|CAX76571.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469484|emb|CAX76572.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469486|emb|CAX76573.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469488|emb|CAX76574.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469490|emb|CAX76575.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469492|emb|CAX76576.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469494|emb|CAX76577.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469496|emb|CAX76578.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226472942|emb|CAX71157.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
Length = 130
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 87/128 (67%), Gaps = 8/128 (6%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+K+LH+A GHVVT+E SGE++RG +VE EDN N + ++ T++DG+ S L+ V
Sbjct: 2 SVGIPIKVLHDAEGHVVTLETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDGRTSNLQQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPG 123
+IRGSK+RF+++PDMLKN+PM KR + +G GRG+ +R A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNSPMLKRPQG-----AKGLGTGRGKNAMLR--AGVRGRGTLV- 113
Query: 124 RGVVPPVR 131
RG V VR
Sbjct: 114 RGRVATVR 121
>gi|256083677|ref|XP_002578067.1| small nuclear ribonucleoprotein SM-D3 [Schistosoma mansoni]
gi|68165953|gb|AAY87930.1| small nuclear ribonucleoprotein SM-D3 [Schistosoma mansoni]
gi|353230790|emb|CCD77207.1| putative small nuclear ribonucleoprotein SM-D3 [Schistosoma
mansoni]
Length = 130
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 87/128 (67%), Gaps = 8/128 (6%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+K+LH+A GHVVT+E SGE++RG +VE EDN N + ++ T++DG+ S L+ V
Sbjct: 2 SVGIPIKVLHDAEGHVVTLETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDGRTSNLQQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPG 123
+IRGSK+RF+++PDMLKN+PM KR + +G GRG+ +R A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNSPMLKRPQG-----AKGLGTGRGKNAMLR--AGVRGRGTFV- 113
Query: 124 RGVVPPVR 131
RG V VR
Sbjct: 114 RGRVATVR 121
>gi|170585533|ref|XP_001897537.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|158595042|gb|EDP33618.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
Length = 91
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 69/85 (81%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G+P+K+LHEA GHV+T+E GE+YRG + E EDN NCQ+ +T T +DG+ L++V
Sbjct: 3 AIGVPIKILHEAEGHVITLETTIGEVYRGKLNEAEDNMNCQMSEVTVTYRDGRTHHLDNV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRL 88
FIRGSK+RFM++PDMLKNAPMFK +
Sbjct: 63 FIRGSKIRFMILPDMLKNAPMFKNI 87
>gi|363751767|ref|XP_003646100.1| hypothetical protein Ecym_4216 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889735|gb|AET39283.1| hypothetical protein Ecym_4216 [Eremothecium cymbalariae
DBVPG#7215]
Length = 102
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS S GIPVKLL+EA GH V++EL +GE YRG +VE EDN NCQL ++T TA++G+V+ +
Sbjct: 1 MSTS-GIPVKLLNEAQGHTVSLELTTGETYRGKLVESEDNMNCQLRDVTATARNGQVTHM 59
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFK 86
+HVFIRGS VRF V+PDM KNAP+F
Sbjct: 60 DHVFIRGSHVRFFVVPDMFKNAPLFN 85
>gi|308482400|ref|XP_003103403.1| CRE-SNR-1 protein [Caenorhabditis remanei]
gi|308259824|gb|EFP03777.1| CRE-SNR-1 protein [Caenorhabditis remanei]
Length = 152
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 87/152 (57%), Gaps = 27/152 (17%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GHVVT+E +GE+YRG ++E EDN NCQL T +DG+ QLE+V
Sbjct: 3 SVGVPIKILHEAEGHVVTLETVTGEVYRGKLIEAEDNMNCQLSETIVTFRDGRSHQLENV 62
Query: 64 FIRGSKV----------------RFMVIPDMLKNAPMFKRLDARIKGKSSSIGV------ 101
FIRG+KV RFM++PDMLKNAPMFK + KG +IG+
Sbjct: 63 FIRGNKVRFKALLYLELPYIFQIRFMILPDMLKNAPMFKNIGRAQKG---AIGMGLGGID 119
Query: 102 --GRGRAVAMRAKAAAAGRGAAPGRGVVPPVR 131
GRGR A R G G PP R
Sbjct: 120 PRGRGRGTAFRRPMGRGGPRGMSRPGGAPPFR 151
>gi|226472944|emb|CAX71158.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
Length = 147
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 82/117 (70%), Gaps = 7/117 (5%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+K+LH+A GHVVT+E SGE++RG +VE EDN N + ++ T++DG+ S L+ V
Sbjct: 2 SVGIPIKVLHDAEGHVVTLETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDGRTSNLQQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+IRGSK+RF+++PDMLKN+PM KR + +G GRG+ +R A GRG
Sbjct: 62 YIRGSKIRFLILPDMLKNSPMLKRPQG-----AKGLGTGRGKNAMLR--AGVRGRGT 111
>gi|45200940|ref|NP_986510.1| AGL157Cp [Ashbya gossypii ATCC 10895]
gi|44985710|gb|AAS54334.1| AGL157Cp [Ashbya gossypii ATCC 10895]
gi|374109756|gb|AEY98661.1| FAGL157Cp [Ashbya gossypii FDAG1]
Length = 102
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS S GIPVKLL+EA GH V++EL +GE YRG +V EDN NCQL ++T TA++G+V+ +
Sbjct: 1 MSTS-GIPVKLLNEAQGHTVSLELTTGETYRGKLVGSEDNMNCQLRDVTATARNGQVTHM 59
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFK 86
+HVF+RGS VRF V+PDM KNAP+FK
Sbjct: 60 DHVFVRGSHVRFFVVPDMFKNAPLFK 85
>gi|290983277|ref|XP_002674355.1| predicted protein [Naegleria gruberi]
gi|284087945|gb|EFC41611.1| predicted protein [Naegleria gruberi]
Length = 134
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 77/100 (77%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS ++GIP+KLLHEA H++++E KSGELYRG ++E ED+ N QL ++T T ++G+ S +
Sbjct: 1 MSSNIGIPIKLLHEAESHIISLETKSGELYRGKLIEAEDSMNVQLVDVTVTHRNGQQSAM 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
V+IRGSK+R+ V+PD+L+ APMFK +D+ +KG+ G
Sbjct: 61 NTVYIRGSKIRYFVLPDILQKAPMFKVVDSTVKGQGRGYG 100
>gi|209881474|ref|XP_002142175.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557781|gb|EEA07826.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 126
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 2/109 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIPVK+L+E GH++++E+KSG+LYRG++ EDN NC L+ + T KDG+ LE
Sbjct: 2 SIGIPVKILYEGLGHIISIEMKSGDLYRGTLAHVEDNMNCMLDTVNVTMKDGRPLALEQC 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV-GRGRAVAMRA 111
++RGS++RF ++PDMLKNAPMFK L A K ++ +GV G RA A R
Sbjct: 62 YLRGSQIRFFILPDMLKNAPMFK-LAANAKNRARILGVAGNKRAFANRT 109
>gi|255718497|ref|XP_002555529.1| KLTH0G11396p [Lachancea thermotolerans]
gi|238936913|emb|CAR25092.1| KLTH0G11396p [Lachancea thermotolerans CBS 6340]
Length = 102
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 70/84 (83%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S GIP+KLL E+ GHVV++EL +GE YRG +V+ EDN N QL ++T TA+DG V++++HV
Sbjct: 3 SNGIPIKLLTESQGHVVSLELTTGEAYRGKLVDSEDNMNVQLRDVTATARDGSVTRMDHV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKR 87
F+RGS +RF V+PD+LKNAPMFK+
Sbjct: 63 FVRGSHIRFFVVPDILKNAPMFKQ 86
>gi|121707652|ref|XP_001271900.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
clavatus NRRL 1]
gi|119400048|gb|EAW10474.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
clavatus NRRL 1]
Length = 136
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 87/137 (63%), Gaps = 24/137 (17%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG +YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDML--------------------KNAPMFKRLDARIKGKSSSIG 100
+ V+IRGS V+F ++PDML +NAPMF+ R +G +G
Sbjct: 64 DQVYIRGSHVKFFIVPDMLRGNIVRGRTSDDGCADFSATRNAPMFRSRGQRGRG----VG 119
Query: 101 VGRGRAVAMRAKAAAAG 117
+ RG+A RA+ G
Sbjct: 120 LARGKATVQRARGQRRG 136
>gi|328771488|gb|EGF81528.1| hypothetical protein BATDEDRAFT_7518, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 77
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 67/77 (87%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+LLHEA GH+VT+ELK+G +YRG ++ EDN N QL +IT+TA++G+VSQL VFIRGS+
Sbjct: 1 QLLHEAMGHIVTIELKTGSVYRGKLLNAEDNMNVQLRDITHTARNGRVSQLTQVFIRGSQ 60
Query: 70 VRFMVIPDMLKNAPMFK 86
+RF+++PDMLKNAPMFK
Sbjct: 61 IRFVIVPDMLKNAPMFK 77
>gi|429329451|gb|AFZ81210.1| LSM domain-containing protein [Babesia equi]
Length = 121
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 67/84 (79%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIPVKLL+E GH+VT EL++ +LYRG++ EDN NC LE +T T KDGK LE V
Sbjct: 2 SIGIPVKLLYEGIGHIVTAELQNSQLYRGTLTNVEDNMNCLLEGVTLTMKDGKTLALEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKR 87
++RGS++RFMV PDML++APMFK+
Sbjct: 62 YLRGSQIRFMVFPDMLRHAPMFKQ 85
>gi|19112491|ref|NP_595699.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe 972h-]
gi|12230614|sp|Q9UUC6.1|SMD3_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5689996|emb|CAB52041.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe]
Length = 97
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 68/82 (82%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
+ + +KLLHE GH+VT+EL++G YRG ++E EDN NCQ+ +I+ TA+DG+VS L+ V+
Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFK 86
IRGS +RF+++PDML+NAPMFK
Sbjct: 61 IRGSHIRFLIVPDMLRNAPMFK 82
>gi|118387719|ref|XP_001026962.1| Sm protein [Tetrahymena thermophila]
gi|89308732|gb|EAS06720.1| Sm protein [Tetrahymena thermophila SB210]
Length = 2269
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 53/118 (44%), Positives = 81/118 (68%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+PVK+L E+ HVVT+ELK+G+ +RG + E ED N +L+N+T ++GK SQL+ V
Sbjct: 2 SIGLPVKILRESESHVVTIELKTGDQFRGYLAESEDTMNVRLDNVTMINRNGKQSQLQSV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAA 121
++RG+++RF+VIPD KNAPMFKR+ A+ K K+ S + R + + + AA
Sbjct: 62 YLRGAQIRFIVIPDFFKNAPMFKRIKAQSKNKNKSAIREKARKIREATEKVSQSYAAA 119
>gi|50545379|ref|XP_500227.1| YALI0A19030p [Yarrowia lipolytica]
gi|49646092|emb|CAG84160.1| YALI0A19030p [Yarrowia lipolytica CLIB122]
Length = 105
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 64/81 (79%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
GIP+KLL EA GHVVTVEL SG YRG ++E EDN N Q+ ++T TA+ G+VS LE V+I
Sbjct: 5 GIPLKLLSEAQGHVVTVELTSGHTYRGKLIEAEDNMNVQIRDVTVTARGGRVSHLEQVYI 64
Query: 66 RGSKVRFMVIPDMLKNAPMFK 86
RGS VRF IP+MLKNAPMF+
Sbjct: 65 RGSHVRFFSIPEMLKNAPMFR 85
>gi|313220248|emb|CBY31107.1| unnamed protein product [Oikopleura dioica]
gi|313235868|emb|CBY11255.1| unnamed protein product [Oikopleura dioica]
Length = 162
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 75/101 (74%), Gaps = 4/101 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
+LG+PVK+LHEA GH VTVE +GELYRG ++E EDN N QL +++ T +DG+ + L ++
Sbjct: 2 TLGVPVKVLHEAEGHTVTVESATGELYRGVLIEAEDNMNMQLRDVSATYRDGRSAHLSNI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
FIRGS+VRF ++PDMLKNAPM L+ K K G+GRG
Sbjct: 62 FIRGSQVRFAILPDMLKNAPM---LNVDKKSKQPR-GLGRG 98
>gi|313214383|emb|CBY42774.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 75/101 (74%), Gaps = 4/101 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
+LG+PVK+LHEA GH VTVE +GELYRG ++E EDN N QL +++ T +DG+ + L ++
Sbjct: 2 TLGVPVKVLHEAEGHTVTVESATGELYRGVLIEAEDNMNMQLRDVSATYRDGRSAHLSNI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
FIRGS+VRF ++PDMLKNAPM L+ K K G+GRG
Sbjct: 62 FIRGSQVRFAILPDMLKNAPM---LNVDKKSKQPR-GLGRG 98
>gi|401411081|ref|XP_003884988.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
gi|325119407|emb|CBZ54960.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
Length = 132
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 76/106 (71%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G PVKLL+E GH VTVE+KSGE+YRG + EDN NC L+ +T T +DG+V LE V
Sbjct: 3 TVGTPVKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLEQV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+IRGS+V+F+V PDML++AP F+ +D K K + VG RA+ M
Sbjct: 63 YIRGSQVKFIVFPDMLRHAPFFRMMDKAGKYKRALGLVGMRRAMNM 108
>gi|254567285|ref|XP_002490753.1| Core Sm protein Sm D3 [Komagataella pastoris GS115]
gi|238030549|emb|CAY68473.1| Core Sm protein Sm D3 [Komagataella pastoris GS115]
Length = 100
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 68/82 (82%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
+L IPVKLL+EA GH+++ EL SGE YRG +VE ED+ N QL+++T TA+DGKVS +E +
Sbjct: 2 ALSIPVKLLNEAQGHIISAELTSGESYRGKLVESEDSMNIQLKDVTLTAQDGKVSHMEQI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMF 85
FIRGS++RF +P++LKNAP+F
Sbjct: 62 FIRGSQIRFFSVPEILKNAPIF 83
>gi|254584500|ref|XP_002497818.1| ZYRO0F14212p [Zygosaccharomyces rouxii]
gi|238940711|emb|CAR28885.1| ZYRO0F14212p [Zygosaccharomyces rouxii]
Length = 100
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 66/81 (81%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
IPVKLL+EA GHVV++EL +GE YRG +VE EDN N QL ++T T D +V++++HVF+
Sbjct: 3 NIPVKLLNEAQGHVVSLELTTGETYRGKLVESEDNMNVQLRDVTVTGVDSQVTRMDHVFV 62
Query: 66 RGSKVRFMVIPDMLKNAPMFK 86
RGS VRF V+PDML+NAP+FK
Sbjct: 63 RGSHVRFFVVPDMLENAPLFK 83
>gi|367016010|ref|XP_003682504.1| hypothetical protein TDEL_0F04820 [Torulaspora delbrueckii]
gi|359750166|emb|CCE93293.1| hypothetical protein TDEL_0F04820 [Torulaspora delbrueckii]
Length = 100
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 65/80 (81%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
IPVKLL+EA GH+V++EL +GE YRG +VE EDN N QL + T T D KV+++ HVF+R
Sbjct: 4 IPVKLLNEAQGHIVSLELTTGETYRGKLVESEDNMNVQLRDATVTGADSKVTRMNHVFVR 63
Query: 67 GSKVRFMVIPDMLKNAPMFK 86
GS++RF V+PDML+NAP+FK
Sbjct: 64 GSQIRFFVVPDMLENAPLFK 83
>gi|237829847|ref|XP_002364221.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii ME49]
gi|211961885|gb|EEA97080.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii ME49]
gi|221487294|gb|EEE25526.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221507086|gb|EEE32690.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 131
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 76/106 (71%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G PVKLL+E GH VTVE+KSGE+YRG + EDN NC L+ +T T +DG+V LE V
Sbjct: 3 TVGTPVKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLEQV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+IRGS+V+F+V PDML++AP F+ +D K K + VG RA+ M
Sbjct: 63 YIRGSQVKFIVFPDMLRHAPFFRMVDKAGKYKRALGLVGMRRAMNM 108
>gi|366991799|ref|XP_003675665.1| hypothetical protein NCAS_0C03090 [Naumovozyma castellii CBS
4309]
gi|342301530|emb|CCC69299.1| hypothetical protein NCAS_0C03090 [Naumovozyma castellii CBS
4309]
Length = 102
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 66/83 (79%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S IPVKLL+EA GH+V++EL +GE YRG ++E EDN N QL ++ T D K+++++HV
Sbjct: 3 SNSIPVKLLNEAQGHIVSIELTTGETYRGKLIESEDNMNVQLRDVVVTQTDSKITRMDHV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
F+RGS ++F V+PDMLKNAP+FK
Sbjct: 63 FVRGSHIKFFVVPDMLKNAPLFK 85
>gi|296083703|emb|CBI23692.3| unnamed protein product [Vitis vinifera]
Length = 118
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ 59
MSRSLGIPVKLLHEA+GHVVTVELKSGELYRGSM+ECEDNWNCQLENIT+TAKD + Q
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDEEARQ 59
>gi|118490850|ref|XP_001238734.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria tenella
strain Houghton]
gi|109238517|emb|CAK51481.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria tenella]
Length = 125
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIPVKLLHE GH +TVE K+G LYRG++ EDN N ++ +T T KDGKV LE V
Sbjct: 6 SVGIPVKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTVTHKDGKVLSLEQV 65
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMR 110
+IRGS+V+ ++ PDML++APMFK D R KG+ VG RA+ MR
Sbjct: 66 YIRGSQVQMVIFPDMLRHAPMFKLAD-RGKGRRPLGLVGMRRAMNMR 111
>gi|300175666|emb|CBK20977.2| unnamed protein product [Blastocystis hominis]
Length = 108
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 71/92 (77%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
+P+KLLHE G+ V VEL +GE YRG +V EDN NCQL N+T A+DGK+S+LE+V+I
Sbjct: 4 SVPIKLLHEGEGNTVIVELTNGEKYRGHLVRAEDNMNCQLTNVTMRARDGKLSKLENVYI 63
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 97
RGS+VR++V+PD+LK +PMF+++ + K S
Sbjct: 64 RGSRVRYVVLPDILKQSPMFQKVQQLKEAKES 95
>gi|156084564|ref|XP_001609765.1| small nuclear ribonucleoprotein (snRNP) [Babesia bovis T2Bo]
gi|154797017|gb|EDO06197.1| small nuclear ribonucleoprotein (snRNP), putative [Babesia bovis]
Length = 110
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G PVKL +E GH+VTVE+++ +LYRG++V EDN NC LE +T KDGK LE V
Sbjct: 2 SIGTPVKLFYEGIGHIVTVEMQNSQLYRGTLVNVEDNMNCLLEGVTMVMKDGKTLALEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSI 99
F+RG+++RF++ PDML++APMFK+ AR + K + I
Sbjct: 62 FLRGAQIRFVIFPDMLRHAPMFKQ-SARDRNKQAVI 96
>gi|406867417|gb|EKD20455.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 115
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 69/83 (83%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA GHVVT+E+ SG++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAP 83
+ V+IRGS VRF ++PDML+ P
Sbjct: 61 DQVYIRGSHVRFFIVPDMLRYGP 83
>gi|156848641|ref|XP_001647202.1| hypothetical protein Kpol_1036p91 [Vanderwaltozyma polyspora DSM
70294]
gi|156117886|gb|EDO19344.1| hypothetical protein Kpol_1036p91 [Vanderwaltozyma polyspora DSM
70294]
Length = 100
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 66/82 (80%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
IP+KLL EA GHVVT+EL +GE YRG +V+ EDN N QL+++T T D KVS+++HVF+
Sbjct: 3 NIPLKLLSEAQGHVVTLELSTGETYRGKLVDSEDNMNVQLQDVTVTGVDSKVSRMDHVFV 62
Query: 66 RGSKVRFMVIPDMLKNAPMFKR 87
RGS ++F V+PD+LKNAP+F +
Sbjct: 63 RGSHIKFFVVPDLLKNAPLFNK 84
>gi|406607031|emb|CCH41546.1| Small nuclear ribonucleoprotein Sm D3 [Wickerhamomyces ciferrii]
Length = 95
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 65/82 (79%), Gaps = 5/82 (6%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S GIPVKLL+EA GH+V++EL SGE YR EDN N QL +IT T++DGKV+ L+HV
Sbjct: 2 SAGIPVKLLNEAQGHIVSLELNSGETYR-----AEDNMNVQLNDITLTSRDGKVTHLDHV 56
Query: 64 FIRGSKVRFMVIPDMLKNAPMF 85
FIRGS +RF V+PDML+NAPMF
Sbjct: 57 FIRGSNIRFFVVPDMLRNAPMF 78
>gi|50294275|ref|XP_449549.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528863|emb|CAG62525.1| unnamed protein product [Candida glabrata]
Length = 99
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 65/82 (79%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
IPVKLL EA GHVVT+EL +G+ YRG +VE EDN N QL ++ T+ K+S+++HVF+
Sbjct: 3 NIPVKLLSEAQGHVVTIELNNGDTYRGKLVESEDNMNVQLRDVMVTSSTQKLSRMDHVFV 62
Query: 66 RGSKVRFMVIPDMLKNAPMFKR 87
RGS +RF V+PDMLKNAP+FK+
Sbjct: 63 RGSHIRFFVVPDMLKNAPLFKK 84
>gi|156097204|ref|XP_001614635.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium vivax Sal-1]
gi|148803509|gb|EDL44908.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
vivax]
Length = 116
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 4/117 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+KLLHE GH ++VE K+G LYRG+++ EDN NC LEN++ KDGK LE V
Sbjct: 2 SVGIPIKLLHEGIGHTISVETKAGVLYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+IRG V FM+ PDML+ AP+FK A+ K ++I RA+ + A+ A+ R A
Sbjct: 62 YIRGGSVSFMIFPDMLRYAPIFKVNKAKTKTNFATI----RRAMEVHARMASKNREA 114
>gi|389582938|dbj|GAB65674.1| small nuclear ribonucleoprotein [Plasmodium cynomolgi strain B]
Length = 116
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 4/117 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+KLLHE GH ++VE K+G LYRG+++ EDN NC LEN++ KDGK LE V
Sbjct: 2 SVGIPIKLLHEGIGHTISVETKAGVLYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+IRG V FM+ PDML+ AP+FK A+ K ++I RA+ + A+ A+ R A
Sbjct: 62 YIRGGSVSFMIFPDMLRYAPIFKVNRAKTKTNFATI----RRAMEVHARMASKNREA 114
>gi|62664874|ref|XP_577651.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|109508438|ref|XP_001063748.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
Length = 142
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 84/125 (67%), Gaps = 4/125 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G P+++L EA G++VT E +GE+Y G ++E EDN NCQ+ NIT T +DG V+Q E V
Sbjct: 2 SIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPG 123
+I +K+RF ++P+MLKNAP+ + L K K+ G+G+A ++A+ AA GRG G
Sbjct: 62 YICDTKIRFPILPNMLKNAPVLENL----KNKNQGSRAGQGKAAILKAQVAARGRGHEMG 117
Query: 124 RGVVP 128
+P
Sbjct: 118 PWKLP 122
>gi|67476256|ref|XP_653731.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gi|56470719|gb|EAL48353.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449709025|gb|EMD48372.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
KU27]
Length = 111
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 67/83 (80%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G P+K+ HE+ G +VT+E+K+GE YRG MVE EDN NCQL ++T TAKDG S+ E++
Sbjct: 2 NIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEYI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
FIRG++VRF+V+P+M KN+P K
Sbjct: 62 FIRGNQVRFVVLPEMFKNSPCLK 84
>gi|407038001|gb|EKE38889.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 111
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 67/83 (80%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G P+K+ HE+ G +VT+E+K+GE YRG MVE EDN NCQL ++T TAKDG S+ E++
Sbjct: 2 NIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEYI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
FIRG++VRF+V+P+M KN+P K
Sbjct: 62 FIRGNQVRFVVLPEMFKNSPCLK 84
>gi|167378504|ref|XP_001734822.1| small nuclear ribonucleoprotein Sm D3 [Entamoeba dispar SAW760]
gi|165903473|gb|EDR29003.1| small nuclear ribonucleoprotein Sm D3, putative [Entamoeba dispar
SAW760]
Length = 111
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 67/83 (80%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G P+K+ HE+ G +VT+E+K+GE YRG MVE EDN NCQL ++T TAKDG S+ E++
Sbjct: 2 NIGAPLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEYI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
FIRG++VRF+V+P+M KN+P K
Sbjct: 62 FIRGNQVRFVVLPEMFKNSPCLK 84
>gi|221054464|ref|XP_002258371.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193808440|emb|CAQ39143.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 116
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 75/115 (65%), Gaps = 4/115 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+KLLHE GH ++VE K+G LYRG+++ EDN NC LEN++ KDGK LE V
Sbjct: 2 SVGIPIKLLHEGIGHTISVETKAGVLYRGTLLFAEDNMNCLLENVSVIKKDGKQILLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGR 118
+IRG V FM+ PDML+ AP+FK + K ++I RA+ + AK A R
Sbjct: 62 YIRGGSVSFMIFPDMLRYAPIFKVNKTKTKTNFATI----RRAMEVHAKMATKNR 112
>gi|401840421|gb|EJT43250.1| SMD3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 99
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 68/86 (79%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
G+PVKLL+EA GHVVT+EL +G YRG +VE ED+ N QL ++T T G V+ ++ +F+
Sbjct: 3 GVPVKLLNEAQGHVVTLELTTGATYRGKLVESEDSMNVQLRDVTATEPHGAVTHMDQIFV 62
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDAR 91
RGS+++F+V+PD+LKNAP+FKR +R
Sbjct: 63 RGSQIKFIVVPDLLKNAPLFKRNSSR 88
>gi|301108107|ref|XP_002903135.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
gi|262097507|gb|EEY55559.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
Length = 113
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 71/90 (78%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS+++G+P+ LLHE G VT+ELK+GE+YRG + E ED+ NCQL ++ T +DG+ S+L
Sbjct: 1 MSKTVGVPISLLHEGEGRTVTIELKNGEVYRGHLTESEDSMNCQLSDVVLTQRDGQKSKL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA 90
E V++RGS+++ +++PD+LKN+P+ ++ A
Sbjct: 61 ELVYVRGSQIKLVILPDILKNSPLLSKVQA 90
>gi|145495655|ref|XP_001433820.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145545630|ref|XP_001458499.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400940|emb|CAK66423.1| unnamed protein product [Paramecium tetraurelia]
gi|124426319|emb|CAK91102.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 70/93 (75%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
SLG+P+K++HEA+ H+VTVELK+GE++ G M E ED N +L+ + +DG+ LE V
Sbjct: 2 SLGVPLKIMHEAAHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS 96
++RGS++RF+VIPD+ K APMFK++ A K K+
Sbjct: 62 YLRGSQIRFVVIPDVFKYAPMFKKIRANAKSKN 94
>gi|403224047|dbj|BAM42177.1| snRNP protein [Theileria orientalis strain Shintoku]
Length = 119
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 64/83 (77%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G PVKLL+E GH+VT+EL++ LYRG++ EDN NC LE +T T KDG+ LE V
Sbjct: 2 SIGAPVKLLYEGIGHIVTIELQNSNLYRGTLTNVEDNMNCLLEGVTMTTKDGRTLALEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
++RG+++ FM+ PDML++APMFK
Sbjct: 62 YLRGAQILFMIFPDMLRHAPMFK 84
>gi|261193182|ref|XP_002622997.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
SLH14081]
gi|239589132|gb|EEQ71775.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
SLH14081]
Length = 124
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 68/80 (85%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
++ ++GIP+KLL+EA GHVVT+E+ SG++YRG ++E EDN N QL++IT TA+DG+VS L
Sbjct: 4 LTSTIGIPIKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHL 63
Query: 61 EHVFIRGSKVRFMVIPDMLK 80
+ V+IRGS VRF ++PDML+
Sbjct: 64 DQVYIRGSHVRFFIVPDMLR 83
>gi|384497172|gb|EIE87663.1| hypothetical protein RO3G_12374 [Rhizopus delemar RA 99-880]
Length = 119
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 67/83 (80%), Gaps = 10/83 (12%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G+P+KLLHEA GH++++ELK+G+LYRG + LE+IT TA+DG+VSQL+ V
Sbjct: 2 TIGVPIKLLHEAQGHIISLELKTGQLYRGKL----------LEDITVTARDGRVSQLDQV 51
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
+IRGS VRF ++PDMLKNAPMFK
Sbjct: 52 YIRGSHVRFFIVPDMLKNAPMFK 74
>gi|296005187|ref|XP_002808925.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
gi|225631811|emb|CAX64206.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
Length = 116
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 76/115 (66%), Gaps = 4/115 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+KLLHE GH ++VE KSG LYRG+++ EDN NC LEN++ KDGK LE V
Sbjct: 2 SVGIPIKLLHEGIGHTISVETKSGILYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGR 118
+IRG V FM+ PDML+ AP+FK ++ K ++I RA+ A+ A+ +
Sbjct: 62 YIRGGSVSFMIFPDMLRYAPIFKINKSKAKTNFTTI----RRAMEAHARIASKNK 112
>gi|6730225|pdb|1D3B|A Chain A, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730227|pdb|1D3B|C Chain C, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730229|pdb|1D3B|E Chain E, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730231|pdb|1D3B|G Chain G, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730233|pdb|1D3B|I Chain I, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730235|pdb|1D3B|K Chain K, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
Length = 75
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 62/74 (83%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPD 77
+IRG K+RF+++PD
Sbjct: 62 YIRGCKIRFLILPD 75
>gi|145493031|ref|XP_001432512.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399624|emb|CAK65115.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 69/93 (74%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
SLG+P+K++HEA H+VTVELK+GE++ G M E ED N +L+ + +DG+ LE V
Sbjct: 2 SLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS 96
++RGS++RF+VIPD+ K APMFK++ A K K+
Sbjct: 62 YLRGSQIRFVVIPDVFKYAPMFKKIRANAKSKN 94
>gi|298714042|emb|CBJ27274.1| Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus
siliculosus]
Length = 113
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 67/83 (80%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G+P+KLLHE GH VTVE+K+GE+YRG + E ED NC + +T T +DG+VS+LE V
Sbjct: 3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
++RGS ++ +V+PD+LKNAP+FK
Sbjct: 63 YLRGSHIKLVVLPDVLKNAPVFK 85
>gi|71028700|ref|XP_763993.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
gi|68350947|gb|EAN31710.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 118
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 64/83 (77%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G P+KLL+E GHVVTVEL++ LYRG++ EDN NC LE + T KDG+ LE V
Sbjct: 2 SIGAPIKLLYEGIGHVVTVELQNSNLYRGTLTNVEDNMNCLLEGVVMTMKDGRTIALEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
++RG++++FM+ PDML++APMFK
Sbjct: 62 YLRGAQIQFMIFPDMLRHAPMFK 84
>gi|403213468|emb|CCK67970.1| hypothetical protein KNAG_0A02810 [Kazachstania naganishii CBS
8797]
Length = 100
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 63/83 (75%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
+ IP+KLL EA GH+V +EL +GE YRG ++ EDN N QL ++T T DG + +EHVF
Sbjct: 1 MSIPIKLLQEAQGHIVDLELHTGETYRGRLIGSEDNMNVQLGDVTVTKVDGSRTTMEHVF 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFKR 87
+RGS+VRF +PDML+NAP+FK+
Sbjct: 61 VRGSQVRFFTLPDMLRNAPLFKK 83
>gi|145510771|ref|XP_001441315.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408561|emb|CAK73918.1| unnamed protein product [Paramecium tetraurelia]
Length = 363
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 5/132 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
SLG+P+K++HEA H+VTVELK+GE++ G M E ED N +L+ + +DG+ LE V
Sbjct: 2 SLGVPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV-AMRAKAAAAGRGAAP 122
++RGS++RF+VIPD+ K APMFK++ A K K+ + R V M + RG
Sbjct: 62 YLRGSQIRFVVIPDVFKYAPMFKKIRANAKSKNMQQIREKARQVRGMEFTSFVNNRGVGA 121
Query: 123 ----GRGVVPPV 130
G GVV +
Sbjct: 122 SYQVGFGVVEEM 133
>gi|50307679|ref|XP_453819.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642953|emb|CAH00915.1| KLLA0D17160p [Kluyveromyces lactis]
Length = 100
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 68/82 (82%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
IP+KLL+E+ GH +T+EL +G++YRG +VE EDN NCQL ++ +T +GK+++++ VFI
Sbjct: 3 AIPIKLLNESQGHEITLELNNGDMYRGKLVENEDNMNCQLRDVIFTQANGKMTRMDDVFI 62
Query: 66 RGSKVRFMVIPDMLKNAPMFKR 87
RGS ++ +V+PDMLK+AP+FK+
Sbjct: 63 RGSNIKLVVVPDMLKHAPLFKK 84
>gi|387220181|gb|AFJ69799.1| small nuclear ribonucleoprotein D3, partial [Nannochloropsis
gaditana CCMP526]
Length = 133
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 78/115 (67%), Gaps = 3/115 (2%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
+GIP+ LLH+A G ++TVE ++GELYRG + E EDN N L ++T T GK S++E ++
Sbjct: 9 VGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILRDVTKTNVHGKESKVELIY 68
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDA--RIKGKSSSIGVG-RGRAVAMRAKAAAA 116
I+GS+V FM++PDMLK APMFKR+ + G +G G RG+A + K AA
Sbjct: 69 IKGSQVNFMILPDMLKKAPMFKRIKVWKKYHGNVPELGAGVRGQAAVISQKTLAA 123
>gi|84996607|ref|XP_953025.1| snRNP protein [Theileria annulata strain Ankara]
gi|65304021|emb|CAI76400.1| snRNP protein, putative [Theileria annulata]
Length = 118
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 64/83 (77%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G P+KLL+E GHVVTVEL++ LYRG++ EDN NC +E + T KDG+ LE V
Sbjct: 2 SIGAPIKLLYEGIGHVVTVELQNSNLYRGTLTNVEDNMNCLMEGVVMTMKDGRTLALEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
++RG++++FM+ PDML++APMFK
Sbjct: 62 YLRGAQIQFMIFPDMLRHAPMFK 84
>gi|325192510|emb|CCA26944.1| small nuclear ribonucleoprotein Sm D3 putative [Albugo laibachii
Nc14]
Length = 112
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 72/88 (81%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
MS+++ +P+ LLHE G +TVELK+GE+YRG + E ED+ NCQL N+ +A++G+ +L
Sbjct: 1 MSKTMAVPIALLHEGEGRNITVELKNGEIYRGHLEESEDSMNCQLSNVVLSARNGQKCKL 60
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRL 88
E V++RGS+++F+++P++LKN+P+F+++
Sbjct: 61 EQVYVRGSQIKFIILPELLKNSPLFEKV 88
>gi|323454301|gb|EGB10171.1| hypothetical protein AURANDRAFT_36815 [Aureococcus
anophagefferens]
Length = 113
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 76/92 (82%), Gaps = 5/92 (5%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
++++G+P+KLLHE GH+VT+ELK+GE+YRG + E E+ NC + ++ TA+DG+V++LE
Sbjct: 5 AKAVGVPIKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLE 64
Query: 62 HVFIRGSKVR-----FMVIPDMLKNAPMFKRL 88
+V+IRGS+++ FM++PD+LK++P+F+++
Sbjct: 65 NVYIRGSQIKRERRAFMILPDLLKHSPVFEKV 96
>gi|313228903|emb|CBY18055.1| unnamed protein product [Oikopleura dioica]
Length = 124
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 68/83 (81%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
SLGIP+K+LHEA HV+T E +GE++RG +VE E++ N Q++++T T ++G +QL ++
Sbjct: 2 SLGIPIKVLHEAESHVITCETSTGEVFRGKLVEAEEHMNIQMQDVTATYRNGSTAQLANI 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
+IRG++++FM++P+MLKNAPM K
Sbjct: 62 YIRGTQIKFMILPEMLKNAPMLK 84
>gi|294933185|ref|XP_002780640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239890574|gb|EER12435.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 120
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 64/83 (77%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++GIP+KLLHE+ GH VTVE+++GELYRG ++ EDN N + + T KDGK + LE
Sbjct: 3 AVGIPIKLLHESVGHTVTVEMQTGELYRGHLIHTEDNMNLLIAEVVVTRKDGKQTSLEQA 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
+IRGSK+R++V+PD L+ APMFK
Sbjct: 63 YIRGSKIRYIVVPDNLRYAPMFK 85
>gi|6323176|ref|NP_013248.1| Smd3p [Saccharomyces cerevisiae S288c]
gi|1173457|sp|P43321.1|SMD3_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|807056|gb|AAB32821.1| Smd3 protein, snRNP protein Smd3=D core small nuclear
ribonucleoprotein [Saccharomyces cerevisiae, BJ3434,
Peptide, 101 aa]
gi|1262307|gb|AAB82381.1| Smd3p: Small nuclear ribonucleoprotein D3 homolog [Saccharomyces
cerevisiae]
gi|1360574|emb|CAA97719.1| SMD3 [Saccharomyces cerevisiae]
gi|151941309|gb|EDN59687.1| Sm D3 [Saccharomyces cerevisiae YJM789]
gi|190406176|gb|EDV09443.1| small nuclear ribonucleoprotein Sm D3 [Saccharomyces cerevisiae
RM11-1a]
gi|256273010|gb|EEU07972.1| Smd3p [Saccharomyces cerevisiae JAY291]
gi|259148134|emb|CAY81383.1| Smd3p [Saccharomyces cerevisiae EC1118]
gi|285813562|tpg|DAA09458.1| TPA: Smd3p [Saccharomyces cerevisiae S288c]
gi|323303905|gb|EGA57686.1| Smd3p [Saccharomyces cerevisiae FostersB]
gi|323308144|gb|EGA61397.1| Smd3p [Saccharomyces cerevisiae FostersO]
gi|323332570|gb|EGA73978.1| Smd3p [Saccharomyces cerevisiae AWRI796]
gi|323336667|gb|EGA77933.1| Smd3p [Saccharomyces cerevisiae Vin13]
gi|323353994|gb|EGA85847.1| Smd3p [Saccharomyces cerevisiae VL3]
gi|349579868|dbj|GAA25029.1| K7_Smd3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764414|gb|EHN05938.1| Smd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|392297664|gb|EIW08763.1| Smd3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 101
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 67/86 (77%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
GIPVKLL+EA GH+V++EL +G YRG +VE ED+ N QL ++ T G V+ ++ +F+
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDAR 91
RGS+++F+V+PD+LKNAP+FK+ +R
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFKKNSSR 90
>gi|366999829|ref|XP_003684650.1| hypothetical protein TPHA_0C00590 [Tetrapisispora phaffii CBS
4417]
gi|357522947|emb|CCE62216.1| hypothetical protein TPHA_0C00590 [Tetrapisispora phaffii CBS
4417]
Length = 100
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 65/81 (80%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
IP+KLL EA GHVV++EL +GE YRG +V+ EDN N QL ++T+T + +V++++ VFI
Sbjct: 3 NIPIKLLSEAQGHVVSLELSTGETYRGKLVDSEDNMNVQLRDVTHTGVNSEVTRMDDVFI 62
Query: 66 RGSKVRFMVIPDMLKNAPMFK 86
RGS++RF +PDMLK+AP+FK
Sbjct: 63 RGSQIRFFALPDMLKHAPLFK 83
>gi|45270956|gb|AAS56859.1| YLR147C [Saccharomyces cerevisiae]
Length = 101
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 67/86 (77%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
GIPVKLL+EA GH+V++EL +G YRG +VE ED+ N QL ++ T G V+ ++ +F+
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDAR 91
RGS+++F+V+PD+LKNAP+FK+ +R
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFKKNPSR 90
>gi|294874372|ref|XP_002766923.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|294881753|ref|XP_002769480.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239868298|gb|EEQ99640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239872939|gb|EER02198.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 119
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 64/83 (77%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++GIP+KLLHE+ GH VTVE+++GELYRG ++ EDN N + + T +DGK + LE
Sbjct: 3 AVGIPIKLLHESVGHTVTVEMQTGELYRGHLIHTEDNMNLLIAEVVVTRRDGKQTSLEQA 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFK 86
+IRGSK+R++V+PD L+ APMFK
Sbjct: 63 YIRGSKIRYIVVPDNLRYAPMFK 85
>gi|349804137|gb|AEQ17541.1| putative small nuclear ribonucleoprotein sm d3 [Hymenochirus
curtipes]
Length = 105
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 69/93 (74%), Gaps = 5/93 (5%)
Query: 23 ELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNA 82
E +GE+YR ++E EDN NCQ+ NIT T +DG+V+QLE V++RGSK+RF+++PDMLKNA
Sbjct: 1 ETNTGEVYR-KLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYMRGSKIRFLILPDMLKNA 59
Query: 83 PMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
PM K + K K+ G GRG+A ++A+ AA
Sbjct: 60 PMLKSM----KNKNQGSGAGRGKAAILKARVAA 88
>gi|323447696|gb|EGB03608.1| hypothetical protein AURANDRAFT_8431 [Aureococcus anophagefferens]
Length = 118
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 77/118 (65%), Gaps = 5/118 (4%)
Query: 3 RSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEH 62
R +G+P+ L+H+ G +VT+E K+G+ YRG + E EDN NC L++ T T G SQ+EH
Sbjct: 1 RGVGVPLILMHDGEGTIVTIECKNGDTYRGFLDETEDNMNCVLKDATRTDAKGNKSQVEH 60
Query: 63 VFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSS-----IGVGRGRAVAMRAKAAA 115
+F+RGS++ F + P+MLK APMF R+ A K K++ G RG+A A+ KA A
Sbjct: 61 IFLRGSQIAFFIFPNMLKKAPMFNRVRAWRKTKATKKAGAPSGTVRGQAAAIIRKAQA 118
>gi|443917507|gb|ELU38208.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 132
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 67/85 (78%), Gaps = 6/85 (7%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++G+PVKLLHEA GH++TVELKSG LY ED+ N L++IT T +DGKVSQL
Sbjct: 1 MASTIGVPVKLLHEALGHIITVELKSGALYP------EDSLNISLKDITVTGRDGKVSQL 54
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMF 85
+ V+IRGS VRF ++PDML+NAP++
Sbjct: 55 DQVYIRGSMVRFFIVPDMLQNAPIW 79
>gi|399215849|emb|CCF72537.1| unnamed protein product [Babesia microti strain RI]
Length = 142
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G PVKLL+E GH++T E +G LYRG++ ED NC +E + T +DGK LE V
Sbjct: 28 SIGTPVKLLYEGIGHIITAESCNGLLYRGTLTNVEDTMNCLMEGVVVTMRDGKTMALEQV 87
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
++RG+++RFMV PDML++APMFK+ + R + + + + G A+ MRAK
Sbjct: 88 YLRGAQIRFMVFPDMLRHAPMFKQ-NPRDRPRLAVLP-GMRHAIQMRAK 134
>gi|448082089|ref|XP_004195048.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
gi|448086614|ref|XP_004196142.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
gi|359376470|emb|CCE87052.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
gi|359377564|emb|CCE85947.1| Piso0_005589 [Millerozyma farinosa CBS 7064]
Length = 106
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S GIPVKLL+EA GH+++VEL +G++YRG ++E EDN N L ++T T K G S +E
Sbjct: 2 SAGIPVKLLNEAQGHIISVELTTGDIYRGKLLENEDNMNLSLYDVTITKGKSGSTSYMEQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VF+RGS +R++++P++LKNAPMF
Sbjct: 62 VFVRGSMIRYVMVPEILKNAPMF 84
>gi|149237821|ref|XP_001524787.1| small nuclear ribonucleoprotein Sm D3 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146451384|gb|EDK45640.1| small nuclear ribonucleoprotein Sm D3 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 106
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S GIPV+LL+EA GH+V++E+ +G++YRG ++E EDN N L ++T T K+G V +E
Sbjct: 2 SAGIPVRLLNEAQGHIVSIEVNNGDVYRGKLLENEDNMNSSLYDVTITNGKNGSVKHMEQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VFIRGS +RF+ +PD+L+NAPMF
Sbjct: 62 VFIRGSMIRFISVPDILRNAPMF 84
>gi|296090161|emb|CBI39980.3| unnamed protein product [Vitis vinifera]
Length = 117
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT 51
MSRSLGIPVKLLHEA+GHVV VELKSGELYRGSM+EC+DNWNCQLENIT+T
Sbjct: 1 MSRSLGIPVKLLHEAAGHVVIVELKSGELYRGSMIECKDNWNCQLENITFT 51
>gi|241955335|ref|XP_002420388.1| small nuclear ribonucleoprotein, putative; snRNP core protein,
putative [Candida dubliniensis CD36]
gi|223643730|emb|CAX41466.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 106
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S GIPV+LL+EA GH++++EL +G+ YRG ++E EDN N L T T K GKVS ++
Sbjct: 2 SAGIPVRLLNEAQGHIISIELVNGDTYRGKLLENEDNMNLSLYEATITQGKSGKVSHMDQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VFIRGS +RF+ +PD+LKNAPMF
Sbjct: 62 VFIRGSMIRFISVPDILKNAPMF 84
>gi|68489557|ref|XP_711397.1| hypothetical protein CaO19.11622 [Candida albicans SC5314]
gi|68489657|ref|XP_711350.1| hypothetical protein CaO19.4146 [Candida albicans SC5314]
gi|46432646|gb|EAK92119.1| hypothetical protein CaO19.4146 [Candida albicans SC5314]
gi|46432696|gb|EAK92167.1| hypothetical protein CaO19.11622 [Candida albicans SC5314]
gi|238882554|gb|EEQ46192.1| small nuclear ribonucleoprotein Sm D3 [Candida albicans WO-1]
Length = 106
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S GIPV+LL+EA GH++++EL +G+ YRG ++E EDN N L T T K GKVS ++
Sbjct: 2 SAGIPVRLLNEAQGHIISIELINGDTYRGKLLENEDNMNLSLYEATITQGKSGKVSHMDQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VFIRGS +RF+ +PD+LKNAPMF
Sbjct: 62 VFIRGSMIRFISVPDILKNAPMF 84
>gi|444314147|ref|XP_004177731.1| hypothetical protein TBLA_0A04160 [Tetrapisispora blattae CBS
6284]
gi|387510770|emb|CCH58212.1| hypothetical protein TBLA_0A04160 [Tetrapisispora blattae CBS
6284]
Length = 100
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 61/80 (76%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
+P+KLL EA GH+V++EL +GE Y+G +VE EDN N QL+++ T D K S+++ VF+R
Sbjct: 4 VPIKLLSEAQGHIVSLELINGETYKGRLVESEDNMNVQLQDVLVTGTDSKQSRMDQVFVR 63
Query: 67 GSKVRFMVIPDMLKNAPMFK 86
GS +RF V+P ML+ AP+FK
Sbjct: 64 GSHIRFFVLPSMLQKAPLFK 83
>gi|410082351|ref|XP_003958754.1| hypothetical protein KAFR_0H02100 [Kazachstania africana CBS
2517]
gi|372465343|emb|CCF59619.1| hypothetical protein KAFR_0H02100 [Kazachstania africana CBS
2517]
Length = 102
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQL-ENITYTAKDGKVSQLEH 62
S IP+KLL+E+ GH++++EL +G+ YRG ++ EDN N QL + I A+ K ++++H
Sbjct: 2 SSNIPIKLLNESQGHIISLELNNGDTYRGKLLTNEDNMNLQLRDTIVTNAQTNKQTKMDH 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMFK 86
VFIRGS+++F+ +PDMLKNAP+FK
Sbjct: 62 VFIRGSQIKFLSLPDMLKNAPLFK 85
>gi|70952429|ref|XP_745383.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium chabaudi
chabaudi]
gi|56525689|emb|CAH74732.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
chabaudi chabaudi]
Length = 129
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 19/129 (14%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVEC--------------EDNWNCQLENIT 49
S+G P+KL+HE GH ++VE KSG LYRG++V C EDN NC L N+T
Sbjct: 2 SVGTPIKLIHEGIGHTISVETKSGILYRGTLV-CSFMLILYFLKDLFAEDNMNCLLSNVT 60
Query: 50 YTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAM 109
+DGK LE V+IRG V FM+ PDML+ AP+FK ++ K ++I RA+
Sbjct: 61 VVKQDGKQVLLEQVYIRGGSVSFMIFPDMLRYAPIFKINKSKAKTNFATI----RRAMEA 116
Query: 110 RAKAAAAGR 118
A+ A+ G+
Sbjct: 117 HARIASKGK 125
>gi|255726920|ref|XP_002548386.1| small nuclear ribonucleoprotein Sm D3 [Candida tropicalis
MYA-3404]
gi|240134310|gb|EER33865.1| small nuclear ribonucleoprotein Sm D3 [Candida tropicalis
MYA-3404]
Length = 106
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S GIPV+LL+EA GHV+++EL +G+ YRG ++E EDN N L T T K G V ++
Sbjct: 2 SAGIPVRLLNEAQGHVISIELTNGDTYRGKLLENEDNMNLSLYEATVTKGKSGSVEHMDQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VFIRGS +RF+ +PD+LKNAPMF
Sbjct: 62 VFIRGSMIRFVSVPDILKNAPMF 84
>gi|325182649|emb|CCA17104.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 133
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 62/86 (72%)
Query: 3 RSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEH 62
R +GIP LLH+ G V++E+KSGE+YRG + E EDN NC L+ T +G + +E
Sbjct: 7 RGVGIPTILLHDGEGTTVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVEL 66
Query: 63 VFIRGSKVRFMVIPDMLKNAPMFKRL 88
V++RGS++ F+V PDMLK+APMFKR+
Sbjct: 67 VYVRGSQILFIVFPDMLKHAPMFKRV 92
>gi|397638104|gb|EJK72932.1| hypothetical protein THAOC_05490 [Thalassiosira oceanica]
Length = 112
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++GIP+KLL+EA G VTVE+KSGE+YRG ++ ED N L + T ++G+V++ V
Sbjct: 3 NIGIPIKLLYEAEGMKVTVEMKSGEIYRGLLLNAEDTMNMTLSEVVRTGRNGQVTKHSTV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK 95
++RGS +RF+ +PD+L+NAP FK++ A +K K
Sbjct: 63 YLRGSGIRFIALPDLLRNAPAFKKV-ASMKAK 93
>gi|219110787|ref|XP_002177145.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411680|gb|EEC51608.1| predicted protein, partial [Phaeodactylum tricornutum CCAP
1055/1]
Length = 87
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 68/85 (80%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++G+P+KLL EA G +TVE+K+GE+YRG +V ED N L ++ TA++GK++++ +V
Sbjct: 3 TVGVPIKLLFEAEGMKITVEMKNGEIYRGLLVGAEDTMNVSLSDVLRTARNGKITKMPNV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRL 88
++RGS +RF+ +PD+LK+AP+F+++
Sbjct: 63 YLRGSSIRFIALPDLLKSAPIFQKV 87
>gi|260947028|ref|XP_002617811.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847683|gb|EEQ37147.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 106
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S G+PV+LL+EA GH+V++EL +G+ YRG ++E EDN N L ++T T + G+ S +
Sbjct: 2 SAGVPVRLLNEAQGHIVSLELTTGDTYRGKLIENEDNMNLSLYDVTITKGRTGETSYMNQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VF+RGS +RF+ +PD+L+NAPMF
Sbjct: 62 VFVRGSMIRFVSVPDILRNAPMF 84
>gi|50422631|ref|XP_459888.1| DEHA2E13420p [Debaryomyces hansenii CBS767]
gi|49655556|emb|CAG88129.1| DEHA2E13420p [Debaryomyces hansenii CBS767]
Length = 106
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S GIPVKLL+EA GH++++EL +G+ YRG ++E EDN N L ++T T + G S +
Sbjct: 2 SAGIPVKLLNEAQGHIISLELTTGDTYRGKLLENEDNMNLSLYDVTITKGRTGNTSYMNQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VF+RGS +RF+++P++LKNAPMF
Sbjct: 62 VFVRGSMIRFVMVPEILKNAPMF 84
>gi|68076469|ref|XP_680154.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium berghei strain
ANKA]
gi|56501047|emb|CAH95430.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
berghei]
Length = 126
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 66/107 (61%), Gaps = 12/107 (11%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVEC-----------EDNWNCQLENITYTA 52
S+G P+KL+HE GH ++VE KSG LYRG +V C EDN NC L N+T
Sbjct: 2 SVGTPIKLIHEGIGHTISVETKSGILYRGILV-CSVATRTIYLFAEDNMNCLLANVTVVK 60
Query: 53 KDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSI 99
+DGK LE V+IRG V FM+ PDML+ AP+FK ++ K ++I
Sbjct: 61 QDGKQVLLEQVYIRGGSVSFMIFPDMLRYAPIFKVNKSKAKTNFATI 107
>gi|448515433|ref|XP_003867337.1| Smd3 core snRNP protein [Candida orthopsilosis Co 90-125]
gi|380351676|emb|CCG21899.1| Smd3 core snRNP protein [Candida orthopsilosis]
Length = 106
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S GIPV+LL+EA GH++T+EL +G+ YRG ++E EDN N L ++T T ++G + ++
Sbjct: 2 SAGIPVRLLNEAQGHIITIELTNGDTYRGKLLENEDNMNSSLFDVTITNGRNGSLKHMDQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VFIRGS +RF+ +PD+L++APMF
Sbjct: 62 VFIRGSMIRFVSVPDILRHAPMF 84
>gi|301099995|ref|XP_002899088.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262104400|gb|EEY62452.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 143
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 81/135 (60%), Gaps = 12/135 (8%)
Query: 3 RSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEH 62
R +GIP LLH+ G +V++E+K+GE YRG + E EDN NC +++ T +G SQ+E
Sbjct: 7 RGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTSQVEQ 66
Query: 63 VFIRGSKVRFMVIPDM----------LKNAPMFKRLD--ARIKGKSSSIGVGRGRAVAMR 110
V++RGS++ F+V PD+ LK+APMFKR+ + KG ++G G A R
Sbjct: 67 VYLRGSQILFIVFPDIYPLQPDIAVTLKHAPMFKRVKMWKKHKGSIPTLGQGGVGGGAPR 126
Query: 111 AKAAAAGRGAAPGRG 125
+AAA R A RG
Sbjct: 127 GQAAAIIRKAQERRG 141
>gi|344301770|gb|EGW32075.1| hypothetical protein SPAPADRAFT_138952 [Spathaspora passalidarum
NRRL Y-27907]
Length = 103
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEHVF 64
GIPV+LL+EA GHV++VEL +G+ YRG ++E EDN N L ++ T K G + + VF
Sbjct: 5 GIPVRLLNEAQGHVISVELTTGDTYRGKLLENEDNMNLSLYDVVITKGKTGDTTYMNQVF 64
Query: 65 IRGSKVRFMVIPDMLKNAPMF 85
+RGS +RF+ +PD+LKNAPMF
Sbjct: 65 VRGSMIRFISVPDILKNAPMF 85
>gi|401887212|gb|EJT51213.1| pre-mRNA splicing factor [Trichosporon asahii var. asahii CBS
2479]
Length = 200
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 57/65 (87%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
+LG+PVKLLHE+ GH+VTVELK+GE+YRG ++E ED+ N L++IT TA+DG+VSQLE V
Sbjct: 3 NLGVPVKLLHESLGHIVTVELKTGEMYRGKLMEAEDSLNMALKDITVTARDGRVSQLEQV 62
Query: 64 FIRGS 68
+IRGS
Sbjct: 63 YIRGS 67
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 63 VFIRGSKVRFMVIPDMLKNAPMFKRLDAR-IKGKSSSIGVGRGRAVAMRAKAAAAGRGAA 121
VF +VRF+++PD+L +APMFKR+ ++G+ IG RGRA RA + G+ +
Sbjct: 138 VFTADIQVRFIIVPDLLAHAPMFKRVGPNAMRGR--GIGAARGRATIQRAISRRGGQPRS 195
Query: 122 PG 123
G
Sbjct: 196 QG 197
>gi|126133653|ref|XP_001383351.1| hypothetical protein PICST_13887 [Scheffersomyces stipitis CBS
6054]
gi|126095500|gb|ABN65322.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 97
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEHVF 64
GIPV+LL+EA GHV+++EL +G+ YRG ++E EDN N L ++ T + G S + VF
Sbjct: 2 GIPVRLLNEAQGHVISLELTTGDTYRGKLLENEDNMNLSLYDVVITKGRTGATSYMNQVF 61
Query: 65 IRGSKVRFMVIPDMLKNAPMF 85
+RGS +RF+ +PD+LKNAPMF
Sbjct: 62 VRGSMIRFITVPDILKNAPMF 82
>gi|354547206|emb|CCE43940.1| hypothetical protein CPAR2_501650 [Candida parapsilosis]
Length = 106
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S GIPV+LL+EA GH++T+EL +G+ YRG ++E EDN N L ++T T ++G ++
Sbjct: 2 SAGIPVRLLNEAQGHIITIELTNGDTYRGKLLENEDNMNASLFDVTITNGRNGSSKHMDQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VF+RGS +RF+ +PD+L++APMF
Sbjct: 62 VFVRGSMIRFVSVPDILRHAPMF 84
>gi|773428|gb|AAA65451.1| small nuclear ribonucleoprotein, partial [Caenorhabditis elegans]
Length = 71
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 54/70 (77%)
Query: 17 GHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIP 76
H+VT+E +GE+YRG + E EDN NCQL T +DG+ QL++VFIRG+K+RFM++P
Sbjct: 2 SHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILP 61
Query: 77 DMLKNAPMFK 86
DMLKNAP FK
Sbjct: 62 DMLKNAPXFK 71
>gi|429858964|gb|ELA33765.1| small nuclear ribonucleoprotein sm d3 [Colletotrichum
gloeosporioides Nara gc5]
Length = 93
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 26/117 (22%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA +DN N QL++IT TA+DG+VS L
Sbjct: 1 MTSTIGIPIKLLNEA----------------------QDNMNVQLKDITVTARDGRVSHL 38
Query: 61 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
+ V+IRGS VRF ++PDML+NAPMF+ + R +G +G+ GRA RA+A+ G
Sbjct: 39 DQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRG----VGMAPGRATVSRARASGRG 91
>gi|344229960|gb|EGV61845.1| hypothetical protein CANTEDRAFT_107251 [Candida tenuis ATCC
10573]
Length = 108
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEHV 63
+ IPV+LL EA GH+VTVEL +G+ YRG ++E EDN N L ++ T + G S + V
Sbjct: 4 IDIPVRLLTEAQGHIVTVELVTGDTYRGKLLENEDNMNLSLYDVVITKGRSGTTSHMSQV 63
Query: 64 FIRGSKVRFMVIPDMLKNAPMF 85
F+RGS +R +++P+MLKNAPMF
Sbjct: 64 FVRGSMIRLVIVPEMLKNAPMF 85
>gi|323445642|gb|EGB02152.1| hypothetical protein AURANDRAFT_35508 [Aureococcus
anophagefferens]
Length = 87
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 58/81 (71%)
Query: 3 RSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEH 62
R +G+P+ L+H+ G +VT+E K+G+ YRG + E EDN NC L++ T T G SQ+EH
Sbjct: 7 RGVGVPLILMHDGEGTIVTIECKNGDTYRGFLDETEDNMNCVLKDATRTDAKGNKSQVEH 66
Query: 63 VFIRGSKVRFMVIPDMLKNAP 83
+F+RGS++ F + P+MLK AP
Sbjct: 67 IFLRGSQIAFFIFPNMLKKAP 87
>gi|262401386|gb|ACY66595.1| small nuclear ribonucleoprotein SM D3 (snRNP core protein D3)
(SM-D3)-like protein [Scylla paramamosain]
Length = 101
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 62/85 (72%), Gaps = 5/85 (5%)
Query: 30 YRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLD 89
YRG ++E EDN N Q+E T T ++G+ ++LE+VFIRGSK+RF+++PDMLKNAPMFK +
Sbjct: 1 YRGKLLEAEDNMNVQMEACTVTYRNGQTARLENVFIRGSKIRFLILPDMLKNAPMFKNMT 60
Query: 90 ARIKGKSSSIGVGRGRAVAMRAKAA 114
R G + G G++ +RA+AA
Sbjct: 61 GRKGGAA-----GSGKSAILRAQAA 80
>gi|348674274|gb|EGZ14093.1| hypothetical protein PHYSODRAFT_510917 [Phytophthora sojae]
Length = 146
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 15/138 (10%)
Query: 3 RSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEH 62
R +GIP LLH+ G +V++E+K+GE YRG + E EDN NC +++ T +G + +E
Sbjct: 7 RGVGIPTILLHDGEGTIVSIEMKTGETYRGLLDETEDNMNCVMKDAVRTDINGNTTHVEQ 66
Query: 63 VFIRGSKVRFMVIPDM-------------LKNAPMFKRLDA--RIKGKSSSIGVGRGRAV 107
V++RGS++ F+V PD+ LK+APMFKR+ + KG ++G G
Sbjct: 67 VYLRGSQILFIVFPDIYPLQPHTCGCIFTLKHAPMFKRVKMWKKHKGAIPTLGQGGVGGG 126
Query: 108 AMRAKAAAAGRGAAPGRG 125
A R +AAA R A RG
Sbjct: 127 APRGQAAAIIRKAQERRG 144
>gi|123480015|ref|XP_001323163.1| Sm protein [Trichomonas vaginalis G3]
gi|121906022|gb|EAY10940.1| Sm protein [Trichomonas vaginalis G3]
Length = 112
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 4/110 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S GIP+KLLHEA+ VV + L +G+ YRG++ EDN NC L N+ +T KDG+ + +
Sbjct: 2 SNGIPIKLLHEATNFVVEIHLNTGDSYRGTLKYVEDNMNCWLTNVVHTQKDGQQIKFDKT 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
++RGS + + +P+ML NA +FK + +K K S G+ R M K
Sbjct: 62 YVRGSNILYFDLPEMLLNARLFKTGETEVKKKYS----GKLRRTFMTVKV 107
>gi|146415963|ref|XP_001483951.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
gi|146391076|gb|EDK39234.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 106
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
S GIPVKLL+EA GHVV++EL +G+ YRG ++E EDN N L ++ T + G + +
Sbjct: 2 SAGIPVKLLNEAQGHVVSLELVTGDTYRGKLLENEDNMNLSLYDVVVTKGRTGATTHMNQ 61
Query: 63 VFIRGSKVRFMVIPDMLKNAPMF 85
VF+RGS +R++ +P++L+NAPMF
Sbjct: 62 VFVRGSMIRYISVPEILRNAPMF 84
>gi|326490932|dbj|BAJ90133.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 137
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/56 (80%), Positives = 51/56 (91%)
Query: 56 KVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRA 111
KVSQLEHVFI GS+VRFM+I DMLKNAPM K L+ARI+GK S+IGVGRGRA+AMRA
Sbjct: 4 KVSQLEHVFIMGSRVRFMIISDMLKNAPMVKLLEARIRGKGSAIGVGRGRALAMRA 59
>gi|147768951|emb|CAN69253.1| hypothetical protein VITISV_038147 [Vitis vinifera]
Length = 611
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/48 (81%), Positives = 46/48 (95%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKV 57
+LLHEA+GHVVTVELKSGEL+RGS++ECEDNWNCQLENIT+T KD +V
Sbjct: 40 QLLHEAAGHVVTVELKSGELFRGSLIECEDNWNCQLENITFTVKDEEV 87
>gi|410956322|ref|XP_003984791.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Felis catus]
Length = 131
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S + +K+LHEA+GH++T E + ++Y G + EDN NC++ NI ++G V+QLE V
Sbjct: 2 SYSVLIKVLHEAAGHIMTCETNTDKMYHGKLGGREDNINCRMSNIAVPYREGPVAQLEQV 61
Query: 64 FIRG-------SKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IR K+ F+ PDML N PM K + K K G GRG+A ++A+ AA
Sbjct: 62 YIRDINICFKKKKICFLTSPDMLTNVPMLKSM----KNKHQGSGSGRGKAAMLKAQVAA 116
>gi|158263375|gb|ABW24416.1| small nuclear ribonucleoprotein [Riftia pachyptila]
Length = 104
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 51/58 (87%)
Query: 31 RGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRL 88
RG ++E EDN NCQ+ +IT T +DG+ +QLE+VF+RGSK+RF+++PDMLKNAPMFK++
Sbjct: 1 RGKLLEAEDNMNCQMSDITCTYRDGRTAQLENVFVRGSKIRFLILPDMLKNAPMFKKV 58
>gi|154414287|ref|XP_001580171.1| Sm protein [Trichomonas vaginalis G3]
gi|121914386|gb|EAY19185.1| Sm protein [Trichomonas vaginalis G3]
Length = 119
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ +LHEA G VVT+E K GE+YRG++ ED N +L ++TYT G S + V+IRGS
Sbjct: 12 IAILHEADGFVVTIETKQGEMYRGTLFGSEDTMNVELHDVTYTNSKGVDSHKDKVYIRGS 71
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSS 97
+ F V+PDM NAPMF + ++KG ++
Sbjct: 72 NIVFFVLPDMFANAPMFID-EKKVKGHAN 99
>gi|213403558|ref|XP_002172551.1| small nuclear ribonucleoprotein Sm D3 [Schizosaccharomyces
japonicus yFS275]
gi|212000598|gb|EEB06258.1| small nuclear ribonucleoprotein Sm D3 [Schizosaccharomyces
japonicus yFS275]
Length = 98
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 21/101 (20%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
+ + +KLLHEA + EDN NCQL++I+ TA+DG+VS L+ V+
Sbjct: 18 MSLCIKLLHEA--------------------QAEDNMNCQLKDISVTARDGRVSHLDQVY 57
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGR 105
IRGS +RF+++PDMLKNAPMFK A ++G+ +S+ GR
Sbjct: 58 IRGSHIRFLIVPDMLKNAPMFKVTPA-VRGRGTSLPTRGGR 97
>gi|298709378|emb|CBJ31311.1| Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus
siliculosus]
Length = 177
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 60/82 (73%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
+P+ LLH+A G ++TVELK+GE+ RG + E ED+ N L++ T GK S L+ ++IR
Sbjct: 1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTSTLQQLYIR 60
Query: 67 GSKVRFMVIPDMLKNAPMFKRL 88
G+++ F ++P+ML+NAPMF R+
Sbjct: 61 GNQIVFCIVPNMLRNAPMFARI 82
>gi|149043763|gb|EDL97214.1| rCG60635, isoform CRA_a [Rattus norvegicus]
Length = 84
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 51/71 (71%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQW 61
Query: 64 FIRGSKVRFMV 74
V + V
Sbjct: 62 LQEEEDVEWGV 72
>gi|148699965|gb|EDL31912.1| small nuclear ribonucleoprotein D3, isoform CRA_a [Mus musculus]
Length = 84
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 52/71 (73%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQW 61
Query: 64 FIRGSKVRFMV 74
G V + V
Sbjct: 62 PHEGEDVGWDV 72
>gi|340508275|gb|EGR34016.1| lsm domain protein [Ichthyophthirius multifiliis]
Length = 93
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 24/104 (23%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+PVK+L E+ HV+TVE+K+G+ +RG + E E V
Sbjct: 2 SIGLPVKILRESESHVITVEMKTGDQFRGYLAESE------------------------V 37
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAV 107
++RG+++RF+VIPD KNAPMFKR+ A+ K K+ ++ +GR +
Sbjct: 38 YLRGAQIRFIVIPDFFKNAPMFKRVKAQTKNKNKTLIREKGRKL 81
>gi|300122650|emb|CBK23217.2| unnamed protein product [Blastocystis hominis]
Length = 125
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 3 RSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAK-DGKVSQLE 61
R +G+P LL+EA G ++ + G +YRG ++E +DNWN ++N+T K ++ E
Sbjct: 13 RIIGMPTLLLYEAEGCTALIQTRDGSIYRGIIMEVQDNWNLNMKNVTMKTKYSNEIIPFE 72
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKRL 88
+FIRG+++ F+V+P+M K++PMF+R+
Sbjct: 73 MLFIRGAQISFIVLPEMFKHSPMFQRV 99
>gi|224004388|ref|XP_002295845.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209585877|gb|ACI64562.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 85
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLEN-ITYTAKDGKVSQLEHV 63
+GIP+ LLH+A G VVTVE K GEL RG + E ED N L+ + K G +E V
Sbjct: 1 VGIPIVLLHDAEGAVVTVETKRGELIRGLLFEAEDMMNLYLKKAVVLGPKPGAKRNVEQV 60
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRL 88
++RG+++ F+V+P+ML++APMF+R+
Sbjct: 61 YVRGTEIVFIVLPEMLRHAPMFQRI 85
>gi|161899479|ref|XP_001712973.1| spliceosomal snRNA-associated Sm core protein required for
pre-mRNA splicing [Bigelowiella natans]
gi|75756468|gb|ABA27361.1| spliceosomal snRNA-associated Sm core protein required for
pre-mRNA splicing [Bigelowiella natans]
Length = 141
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 64/94 (68%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
S+++GIP+KL+H+A H ++V+LK G+L G ++ EDNWN L+ + K+ K S+
Sbjct: 5 SKNVGIPLKLIHQAEKHQISVKLKDGKLLIGELMNSEDNWNLCLKKVIIKEKENKSSKSM 64
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK 95
F+RG+++ F++IP++LK +P+F L ++ K
Sbjct: 65 LYFVRGNQITFIIIPEILKYSPLFYELRLKMTVK 98
>gi|403369356|gb|EJY84523.1| hypothetical protein OXYTRI_17631 [Oxytricha trifallax]
Length = 574
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 35 VECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRL-DARIK 93
+E ED N +L+++ T KDG+ L+ VF+RGS+VRF++IPDMLKN+PMFKR+ + K
Sbjct: 1 MEAEDTMNMRLDDVYVTGKDGRQYHLDQVFVRGSQVRFIIIPDMLKNSPMFKRIANQAKK 60
Query: 94 GKSSSIGVGRGRAVA 108
GK++ + GRGR +
Sbjct: 61 GKNALLAKGRGRGIG 75
>gi|346321072|gb|EGX90672.1| tRNA methyltransferase subunit GCD14, putative [Cordyceps militaris
CM01]
Length = 712
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 4/69 (5%)
Query: 38 EDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 97
EDN N QL++IT TA+DG+VS L+ V+IRGS VRF ++PDML+NAPMF+ + R +G
Sbjct: 634 EDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPDMLRNAPMFRSSNLRGRG--- 690
Query: 98 SIGVGRGRA 106
+G+ RGRA
Sbjct: 691 -VGMARGRA 698
>gi|410730161|ref|XP_003671258.2| hypothetical protein NDAI_0G02400 [Naumovozyma dairenensis CBS
421]
gi|401780078|emb|CCD26015.2| hypothetical protein NDAI_0G02400 [Naumovozyma dairenensis CBS
421]
Length = 67
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 48/61 (78%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
IPVKLL+EA GH+V+VEL +GE YRG ++E EDN N QL ++ T D K+++++HVF+R
Sbjct: 4 IPVKLLNEAQGHIVSVELATGETYRGKLIESEDNMNIQLRDVIVTGTDSKMTRMDHVFVR 63
Query: 67 G 67
G
Sbjct: 64 G 64
>gi|430811877|emb|CCJ30671.1| unnamed protein product [Pneumocystis jirovecii]
Length = 114
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 14/99 (14%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+GIP+KLLHEA+GH+VT EL +G YRG ++E EDN N QL++IT TA+DG+ V
Sbjct: 3 SIGIPLKLLHEATGHIVTCELSNGSTYRGKLLEAEDNMNIQLKDITVTARDGR------V 56
Query: 64 FIRGSKVRFMVIPDML--------KNAPMFKRLDARIKG 94
F S + + +L +NAPMF+ R +G
Sbjct: 57 FTSRSGIYSWIACSLLYCTRHVKYRNAPMFRSRSVRGRG 95
>gi|326929848|ref|XP_003211067.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Meleagris
gallopavo]
gi|327289616|ref|XP_003229520.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Anolis
carolinensis]
gi|354491990|ref|XP_003508135.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cricetulus
griseus]
gi|395517578|ref|XP_003762952.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Sarcophilus
harrisii]
gi|344256042|gb|EGW12146.1| Small nuclear ribonucleoprotein Sm D3 [Cricetulus griseus]
Length = 84
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 53/71 (74%), Gaps = 4/71 (5%)
Query: 45 LENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG
Sbjct: 1 MSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRG 56
Query: 105 RAVAMRAKAAA 115
+A ++A+ AA
Sbjct: 57 KAAILKAQVAA 67
>gi|296422411|ref|XP_002840754.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636977|emb|CAZ84945.1| unnamed protein product [Tuber melanosporum]
Length = 79
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 6/82 (7%)
Query: 42 NCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV 101
N QL +IT TA+DG+VS L+ V+IRGS VRF ++PDML+NAPMF+ R +G +G+
Sbjct: 2 NVQLRDITVTARDGRVSHLDQVYIRGSHVRFFIVPDMLRNAPMFRSRAVRGRG----VGL 57
Query: 102 GRGRAVAMRAKAAA--AGRGAA 121
RGRA RA+ GRG A
Sbjct: 58 ARGRATVNRARGQQNRGGRGTA 79
>gi|449329731|gb|AGE96001.1| small nuclear ribonucleoprotein d3 [Encephalitozoon cuniculi]
Length = 87
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++ +P+KLLHE+ G +VTVE SG++YRG + E +D N L+++ T+ + +S+ E V
Sbjct: 2 AVTVPLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVTSNNSSLSRKE-V 60
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKR 87
IRGS +RF V+P LK AP F++
Sbjct: 61 LIRGSSIRFFVLPPALKFAPFFEK 84
>gi|219122966|ref|XP_002181806.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407082|gb|EEC47020.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 95
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
+ +GIP+ +LH+A G V+ VE K GEL RG + E ED N ++N +G +
Sbjct: 6 NNRVGIPIVVLHDAEGAVIEVETKKGELIRGLLFEAEDMMNLYIKNAVVLDPNGVKRKTP 65
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKR 87
+++RG ++ F+V+PDMLK+APMFKR
Sbjct: 66 QMYLRGCEILFIVLPDMLKHAPMFKR 91
>gi|19173042|ref|NP_597593.1| similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3 [Encephalitozoon
cuniculi GB-M1]
gi|19168709|emb|CAD26228.1| similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3 [Encephalitozoon
cuniculi GB-M1]
Length = 87
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++ +P+KLLHE+ G +VTVE SG++YRG + E +D N L+++ T+ + +S+ E V
Sbjct: 2 AVTVPLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVTSNNSSLSRKE-V 60
Query: 64 FIRGSKVRFMVIPDMLKNAPMF 85
IRGS +RF V+P LK AP F
Sbjct: 61 LIRGSSIRFFVLPPALKFAPFF 82
>gi|396081074|gb|AFN82693.1| small nuclear D3-like ribonucleoprotein [Encephalitozoon romaleae
SJ-2008]
Length = 87
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
+ +P+KLLHEA G +VT+E +G++YRG M E +D N L+ +T T+ G S +
Sbjct: 3 ITVPLKLLHEAQGFIVTIETSNGDMYRGRMKEIDDYMNVVLDEVTVTSF-GSCSPRKEAI 61
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDA 90
IRGS +RF V+P LK AP F R +
Sbjct: 62 IRGSSIRFFVLPPALKFAPFFGRYET 87
>gi|303388687|ref|XP_003072577.1| small nuclear D3-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
gi|303301718|gb|ADM11217.1| small nuclear D3-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
Length = 86
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
IP+KLLHEA G VVTVE SG++YRG M E +D N L + T+ + + E V IR
Sbjct: 5 IPLKLLHEAQGFVVTVETNSGDMYRGQMKEVDDYMNIILTDAVVTSNSSCIPRKE-VVIR 63
Query: 67 GSKVRFMVIPDMLKNAPMFKR 87
GS +RF V+P LK AP F R
Sbjct: 64 GSSIRFFVLPPALKFAPFFGR 84
>gi|401825715|ref|XP_003886952.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|392998109|gb|AFM97971.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 87
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++ +P+KLLHEA G VVTVE +G++YRG M E +D N L+ +T T+ + + E +
Sbjct: 2 AVTVPLKLLHEAQGFVVTVETNNGDMYRGRMKEVDDYMNVVLDEVTVTSHSSCMPKKE-I 60
Query: 64 FIRGSKVRFMVIPDMLKNAPMF 85
IRGS +RF V+P LK AP F
Sbjct: 61 VIRGSSIRFFVLPPALKFAPFF 82
>gi|224008695|ref|XP_002293306.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970706|gb|EED89042.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 182
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 21 TVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLK 80
T ++K+GE+YRG ++ ED N L + TA++G+VS+L V++RGS VRF+ +PD+L+
Sbjct: 87 TQQMKNGEIYRGLLLNAEDTMNMTLSEVVRTARNGQVSKLPTVYLRGSGVRFIALPDLLR 146
Query: 81 NAPMFKRLDARIKGK 95
NAP FK++ A +K K
Sbjct: 147 NAPAFKKV-ASMKAK 160
>gi|401428927|ref|XP_003878946.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495195|emb|CBZ30499.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 113
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 62/98 (63%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
IP+K+L++A V++E+ +GE+Y G++ E ++N N L+N T TA+ GK ++++ VF+R
Sbjct: 5 IPIKVLYDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKNATKTARGGKETKMDSVFVR 64
Query: 67 GSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
GS + F +PD L+ +P R + + G G+G
Sbjct: 65 GSNIVFFQLPDALQTSPALLRAGEVVSKAKDTRGDGKG 102
>gi|157133873|ref|XP_001663050.1| hypothetical protein AaeL_AAEL012919 [Aedes aegypti]
gi|108870656|gb|EAT34881.1| AAEL012919-PA [Aedes aegypti]
Length = 96
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%), Gaps = 4/60 (6%)
Query: 42 NCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR----IKGKSS 97
NCQ+ +T T +DG+ S LE+V+IRGSKVRFM +PDMLKNAPMFK+ A+ +GKS+
Sbjct: 2 NCQMTQLTVTYRDGRTSNLENVYIRGSKVRFMNLPDMLKNAPMFKKQGAKAGTACRGKSA 61
>gi|399949598|gb|AFP65256.1| small nuclear ribonucleoprotein Sm D3 [Chroomonas mesostigmatica
CCMP1168]
Length = 83
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
+P++L+ EA VVT+E K GE YRG +V+ E+N NC LEN + K+GK VFI
Sbjct: 4 SLPLQLIFEARPFVVTIESKMGEKYRGKLVQVENNMNCYLENAIF-RKNGKSKFRNFVFI 62
Query: 66 RGSKVRFMVIPDMLKNAPMFK 86
RG+ V+ + +PD+L+ P+ K
Sbjct: 63 RGNNVKTIYLPDILREVPLLK 83
>gi|71663921|ref|XP_818947.1| small nuclear ribonucleoprotein SmD3 [Trypanosoma cruzi strain CL
Brener]
gi|70884226|gb|EAN97096.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma
cruzi]
Length = 115
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
+ IP+K+L +A G +++E+ +GELY G++ E +DN N L + T K GK L V
Sbjct: 3 TFSIPLKVLFDAIGTTISLEVSNGELYTGTLSEVQDNMNVLLISAKKTKKSGKTVDLNSV 62
Query: 64 FIRGSKVRFMVIPDMLKNAP 83
F+RGS + F +PD L+ +P
Sbjct: 63 FVRGSSIVFFQLPDALRTSP 82
>gi|66807347|ref|XP_637396.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853183|sp|Q54KX4.1|LSM4_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|60465817|gb|EAL63891.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 177
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL GH + VELK+GE Y G +V C DNW N L+N+ T+KD K +++ +
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNC-DNWMNINLKNVIRTSKDSDKFWKIQSCY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARI---KGKSSSIGVGRGRAVAMRAKAAAAGRG 119
IRG+ ++++ +PD + + + R + S+ G GRG A R + A+GRG
Sbjct: 61 IRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRG 118
>gi|146099718|ref|XP_001468724.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|134073092|emb|CAM71812.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
Length = 113
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 61/98 (62%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
IP+K+L +A V++E+ +GE+Y G++ E ++N N L++ T TA+ GK ++++ VF+R
Sbjct: 5 IPIKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVR 64
Query: 67 GSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
GS + F +PD L+ +P R + + G G+G
Sbjct: 65 GSNIVFFQLPDALQTSPALLRAGEVVSKAQDTRGDGKG 102
>gi|340053110|emb|CCC47397.1| putative small nuclear ribonucleoprotein SmD3 [Trypanosoma vivax
Y486]
Length = 115
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 12/112 (10%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
+ +P+K+L++A G VV++E+ +G +Y G++ + EDN N L T+K G+V + V
Sbjct: 3 TFSVPLKVLYDAIGTVVSLEVANGSVYTGTLSQLEDNMNVLLTKAQKTSKSGRVENMASV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKR--------LDARIKGKSSSIGVGRGRAV 107
+RGS + F +PD L+ P + LDAR +GK G G R V
Sbjct: 63 LVRGSHIVFFQLPDALRAGPALLKAGTIVPSALDARGEGK----GFGERRTV 110
>gi|157876267|ref|XP_001686492.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398022728|ref|XP_003864526.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68129566|emb|CAJ08109.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|322502761|emb|CBZ37844.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 113
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 61/98 (62%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
IP+K+L +A V++E+ +GE+Y G++ E ++N N L++ T TA+ GK ++++ VF+R
Sbjct: 5 IPIKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVR 64
Query: 67 GSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
GS + F +PD L+ +P R + + G G+G
Sbjct: 65 GSNIVFFQLPDALQTSPALLRAGEVVSKAKDTRGDGKG 102
>gi|397641451|gb|EJK74654.1| hypothetical protein THAOC_03654 [Thalassiosira oceanica]
Length = 90
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 24 LKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAP 83
+KSGE+YRG ++ ED N L + T ++G+V++ V++RGS +RF+ +PD+L+NAP
Sbjct: 1 MKSGEIYRGLLLNAEDTMNMTLSEVVRTGRNGQVTKHSTVYLRGSGIRFIALPDLLRNAP 60
Query: 84 MFKRLDARIKGK 95
FK++ A +K K
Sbjct: 61 AFKKV-ASMKAK 71
>gi|68531941|ref|XP_723655.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478019|gb|EAA15220.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 215
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 60/181 (33%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE-- 61
S+G P+KL+HE GH ++VE KSG LYRG ++ EDN NC L N+T +DGK LE
Sbjct: 2 SVGTPIKLIHEGIGHTISVETKSGILYRGILLFAEDNMNCLLSNVTVVKQDGKQILLEVC 61
Query: 62 ------------------------------HV-------------------FIRGSKVR- 71
H+ F++ +R
Sbjct: 62 ENSKKITKHFVFLPSLRNFQFYTSICLTIYHIINTFFASLVHMYKSFISFFFLQQVYIRG 121
Query: 72 ----FMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGRGVV 127
FM+ PDML+ AP+FK ++ K ++I RA+ A+ A+ A +V
Sbjct: 122 GSVSFMIFPDMLRYAPIFKVNKSKAKTNFATI----RRAMEAHARIASKTNEAEFSNKIV 177
Query: 128 P 128
Sbjct: 178 T 178
>gi|168038469|ref|XP_001771723.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677030|gb|EDQ63506.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 73
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEHVFI 65
+P+KLLHE GH VTVELK+G++ RG ++E E+NW QL+ + ++ GK +L+ +FI
Sbjct: 1 VPLKLLHEGEGHGVTVELKNGDVCRGKLIESENNWTLQLDTANFIFSRTGKEVKLDSIFI 60
Query: 66 RGSKVRFMVIPDM 78
RG +++ ++ M
Sbjct: 61 RGRRIKLVLFQPM 73
>gi|154336783|ref|XP_001564627.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061662|emb|CAM38693.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 113
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 59/98 (60%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
IP+K+L +A V++E+ +GE+Y G + E ++N N L+N T T + GK ++++ VF+R
Sbjct: 5 IPMKVLFDALHLKVSIEVATGEVYHGIVEELQNNMNVLLKNATKTTRGGKETKMDSVFVR 64
Query: 67 GSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
GS + F +PD L+ +P R + + G G+G
Sbjct: 65 GSNIVFFQLPDALQTSPALLRAGEIVSKAKDTRGDGKG 102
>gi|328351139|emb|CCA37539.1| Calcium-binding mitochondrial carrier protein SCaMC-1-B
[Komagataella pastoris CBS 7435]
Length = 521
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGK 56
+L IPVKLL+EA GH+++ EL SGE YRG +VE ED+ N QL+++T TA+DGK
Sbjct: 2 ALSIPVKLLNEAQGHIISAELTSGESYRGKLVESEDSMNIQLKDVTLTAQDGK 54
>gi|12230258|sp|Q43582.1|LSM4_TOBAC RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 10; Short=GRP 10
gi|790473|emb|CAA58702.1| unnamed protein product [Nicotiana tabacum]
Length = 146
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ ++
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYV 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGRG 125
RG+ ++++ +PD + + + +A+ + GVGR RA R +A + GRG
Sbjct: 62 RGNTIKYLRVPDEVIDK---VQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRG 118
Query: 126 V 126
+
Sbjct: 119 M 119
>gi|432854576|ref|XP_004067969.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Oryzias
latipes]
Length = 144
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 24/136 (17%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK-----------A 113
IRGS ++++ IPD + + +K + S G GRG A + +
Sbjct: 61 IRGSTIKYLRIPDEIIDM---------VKDEVVSKGRGRGGAQQNKQQGKGRGGAGRGVF 111
Query: 114 AAAGRG-AAPGRGVVP 128
+ GRG + PGRG P
Sbjct: 112 GSRGRGMSGPGRGQQP 127
>gi|357619535|gb|EHJ72069.1| hypothetical protein KGM_17625 [Danaus plexippus]
Length = 138
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIP----DMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
IRGS ++++ IP DM+K K +R +G+ I GRG MR+ + RGA
Sbjct: 61 IRGSTIKYLRIPDEVIDMVKEETQVK---SRGRGE---ISKGRG-GQNMRSGRGGS-RGA 112
Query: 121 APGRGVVPPVRR 132
RG P+ R
Sbjct: 113 FGNRGRAAPLSR 124
>gi|354473886|ref|XP_003499163.1| PREDICTED: hypothetical protein LOC100769464 [Cricetulus griseus]
Length = 391
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQ 59
S+ L +P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K +
Sbjct: 250 SQFLMLPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWR 308
Query: 60 LEHVFIRGSKVRFMVIPDML 79
+ +IRGS ++++ IPD +
Sbjct: 309 MPECYIRGSTIKYLRIPDEI 328
>gi|330798959|ref|XP_003287516.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
gi|325082462|gb|EGC35943.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
Length = 168
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL GH + VELK+GE Y G ++ C DNW N L N+ T+KD K +++ +
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGYLINC-DNWMNINLRNVIRTSKDSDKFWKIQSCY 60
Query: 65 IRGSKVRFMVIP----DMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
IRG+ ++++ +P D++ R KG +++ G GRGR
Sbjct: 61 IRGNTIKYISVPDEIIDLVVEEEQISRPHNLSKGDNTT-GRGRGRG 105
>gi|256083180|ref|XP_002577827.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
gi|360044788|emb|CCD82336.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
Length = 142
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+PV LL A+ + VELKSGE Y G +V C+D N L+ + T++DG + ++ +I
Sbjct: 2 LPVTLLKAATNLPMLVELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYI 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
RGS ++++ IPD + + A+++ +S S GRG
Sbjct: 62 RGSIIKYLRIPDDVIDKVKEDLQLAKMRNRSQSADTGRG 100
>gi|167516422|ref|XP_001742552.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779176|gb|EDQ92790.1| predicted protein [Monosiga brevicollis MX1]
Length = 115
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL AS H++ VELK+GE Y G + +C++ N + ++T T+KDG + ++ +I
Sbjct: 2 LPLSLLRAASNHMMLVELKNGETYNGHLSKCDNYMNITMRDVTLTSKDGDRFWKMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++F+ IPD
Sbjct: 62 RGNNIKFLRIPD 73
>gi|91084013|ref|XP_975325.1| PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated
[Tribolium castaneum]
Length = 163
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 14 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 72
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG--RGAA- 121
IRGS ++++ IPD + + M K +A +K + + GRG R + AA G RG
Sbjct: 73 IRGSTIKYLRIPDEVID--MVKE-EAVVKNRGRDMKGGRG-GQNQRNRPAARGSYRGEPD 128
Query: 122 PGRGV 126
PG G
Sbjct: 129 PGPGF 133
>gi|270007999|gb|EFA04447.1| hypothetical protein TcasGA2_TC014750 [Tribolium castaneum]
Length = 130
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 14 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 72
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAG 117
IRGS ++++ IPD + M K +A +K + + GRG R + AA G
Sbjct: 73 IRGSTIKYLRIPDEV--IDMVKE-EAVVKNRGRDMKGGRG-GQNQRNRPAARG 121
>gi|410921860|ref|XP_003974401.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Takifugu
rubripes]
Length = 147
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 28/135 (20%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 6 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 64
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAA---------- 114
IRGS ++++ IPD + + K + GRGR A + K
Sbjct: 65 IRGSTIKYLRIPDEIIDMV-----------KEDVLSKGRGRGGAQQNKQQGKGRGGAGRG 113
Query: 115 ---AAGRG-AAPGRG 125
+ GRG PGRG
Sbjct: 114 VFGSRGRGLTGPGRG 128
>gi|332376551|gb|AEE63415.1| unknown [Dendroctonus ponderosae]
Length = 135
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIP----DMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
IRGS ++++ IP DM+K + K +R + R R A+ GR
Sbjct: 61 IRGSTIKYLRIPDEVIDMVKEETVTKNKQSRDQKGGRGGQNQRNRPA---ARGNFGGRAN 117
Query: 121 APG 123
PG
Sbjct: 118 KPG 120
>gi|403303582|ref|XP_003942405.1| PREDICTED: uncharacterized protein LOC101034609 [Saimiri
boliviensis boliviensis]
Length = 285
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 148 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 206
Query: 65 IRGSKVRFMVIPDML 79
IRGS ++++ IPD +
Sbjct: 207 IRGSTIKYLRIPDEI 221
>gi|348523129|ref|XP_003449076.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Oreochromis niloticus]
Length = 147
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 28/135 (20%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAA---------- 114
IRGS ++++ IPD + + K + GRGR A + K
Sbjct: 61 IRGSTIKYLRIPDEIIDMV-----------KEEVVSKGRGRGGAQQNKQQGKGRGAGGRG 109
Query: 115 ---AAGRG-AAPGRG 125
+ GRG PGRG
Sbjct: 110 LFGSRGRGMTGPGRG 124
>gi|148696909|gb|EDL28856.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 143
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLE 61
S +P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++
Sbjct: 4 SCSLPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMP 62
Query: 62 HVFIRGSKVRFMVIPD 77
+IRGS ++++ IPD
Sbjct: 63 ECYIRGSTIKYLRIPD 78
>gi|13161882|emb|CAC33027.1| Lsm4 protein [Takifugu rubripes]
Length = 144
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 29/136 (21%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA----------- 113
IRGS ++++ IPD + + K + GRGR A + K
Sbjct: 61 IRGSTIKYLRIPDEIIDMV-----------KEDVLSKGRGRGGAQQNKQQGKGRGGAGRV 109
Query: 114 ---AAAGRG-AAPGRG 125
+ GRG PGRG
Sbjct: 110 GVFGSRGRGLTGPGRG 125
>gi|426230288|ref|XP_004009208.1| PREDICTED: uncharacterized protein LOC101110507, partial [Ovis
aries]
Length = 207
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 6 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 64
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 65 IRGSTIKYLRIPD 77
>gi|395848095|ref|XP_003796696.1| PREDICTED: uncharacterized protein LOC100963645 [Otolemur
garnettii]
Length = 312
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 175 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 233
Query: 65 IRGSKVRFMVIPDML 79
IRGS ++++ IPD +
Sbjct: 234 IRGSTIKYLRIPDEI 248
>gi|390597253|gb|EIN06653.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 130
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G ++ C++ N L + T+ DG + +L+ +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSADGERFWKLKECYI 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKS---SSIGVGRG 104
RGS ++++ +PD L +A ++ AR G+S S + GRG
Sbjct: 62 RGSTIKYLRVPDTLLDAVKEEQTRAREAGRSARGSHVSGGRG 103
>gi|281201415|gb|EFA75627.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 157
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL GH + VELK+GE + G +V C DNW N L+N+ T+KD K +L+ +
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETFNGYLVNC-DNWMNINLKNVIRTSKDSDKFWKLQSCY 60
Query: 65 IRGSKVRFMVIPD 77
IRG+ ++++ +PD
Sbjct: 61 IRGNTIKYISVPD 73
>gi|384489888|gb|EIE81110.1| hypothetical protein RO3G_05815 [Rhizopus delemar RA 99-880]
Length = 129
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LLH A+GH + VELKSGE + G +V C DNW N L + T+ +G K +L +
Sbjct: 2 LPLSLLHTAAGHPMLVELKSGETFNGHLVNC-DNWMNLTLREVIQTSPEGDKFWRLPECY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIK 93
IRG+ ++++ +P+ + + M K ++R +
Sbjct: 61 IRGNTIKYLNVPEEIVD--MVKEEESRTR 87
>gi|355700149|gb|AES01356.1| LSM4-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 153
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 17 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 75
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 76 IRGSTIKYLRIPD 88
>gi|301753917|ref|XP_002912773.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Ailuropoda melanoleuca]
Length = 152
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|307195781|gb|EFN77595.1| U6 snRNA-associated Sm-like protein LSm4 [Harpegnathos saltator]
Length = 138
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 1 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNVNLREVICTSRDGDKFWRMPECY 59
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 60 IRGSTIKYLRIPD 72
>gi|326934546|ref|XP_003213349.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Meleagris
gallopavo]
Length = 174
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 38 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 96
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 97 IRGSTIKYLRIPD 109
>gi|162606428|ref|XP_001713244.1| putative small nuclear ribonucleoprotein Sm D3 [Guillardia theta]
gi|12580710|emb|CAC27028.1| putative small nuclear ribonucleoprotein Sm D3 [Guillardia theta]
Length = 79
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 11 LLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKV 70
+L E+ +V+T+E K+G +YRG ++ E+N NC L+ + K KV +L VF+RGS +
Sbjct: 9 ILRESKPYVITIECKNGFIYRGKLIHIEENMNCILKE-AFVIKKKKVQKLTLVFLRGSNI 67
Query: 71 RFMVIPDML 79
+IPD+L
Sbjct: 68 SMFIIPDIL 76
>gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|6692064|emb|CAB65729.1| Lsm4 protein [Mus musculus]
Length = 137
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|332019235|gb|EGI59745.1| U6 snRNA-associated Sm-like protein LSm4 [Acromyrmex echinatior]
Length = 138
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 1 LPLTLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 59
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 60 IRGSTIKYLRIPD 72
>gi|307178481|gb|EFN67170.1| U6 snRNA-associated Sm-like protein LSm4 [Camponotus floridanus]
Length = 139
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLTLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|195051225|ref|XP_001993055.1| GH13613 [Drosophila grimshawi]
gi|193900114|gb|EDV98980.1| GH13613 [Drosophila grimshawi]
Length = 155
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L ++ T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|159107430|ref|XP_001703995.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia lamblia
ATCC 50803]
gi|157432041|gb|EDO76321.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia lamblia
ATCC 50803]
Length = 90
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++ P++LL EA V+VE ++G +Y G +V E + + N T T G+ + V
Sbjct: 2 TITAPIQLLFEAIDMCVSVETRTGSIYEGKLVSVEPTLSVTISNCTITHPTGQKETAQTV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARI 92
+RGS+VRF+ +P+ L ++P+ K+ + +I
Sbjct: 62 MLRGSEVRFVSVPNALVDSPVLKQGNRKI 90
>gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 2
gi|3927916|emb|CAA10233.1| glycine-rich protein 2 [Fagus sylvatica]
Length = 148
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELKSGE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|119605093|gb|EAW84687.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
Length = 163
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLE 61
+ +P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++
Sbjct: 23 AFQLPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMP 81
Query: 62 HVFIRGSKVRFMVIPD 77
+IRGS ++++ IPD
Sbjct: 82 ECYIRGSTIKYLRIPD 97
>gi|195578187|ref|XP_002078947.1| GD22262 [Drosophila simulans]
gi|194190956|gb|EDX04532.1| GD22262 [Drosophila simulans]
Length = 154
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L ++ T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|25012547|gb|AAN71375.1| RE35747p [Drosophila melanogaster]
Length = 154
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L ++ T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|226372266|gb|ACO51758.1| U6 snRNA-associated Sm-like protein LSm4 [Rana catesbeiana]
Length = 140
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|157823641|ref|NP_001099543.1| U6 snRNA-associated Sm-like protein LSm4 [Rattus norvegicus]
gi|159032056|ref|NP_056631.2| U6 snRNA-associated Sm-like protein LSm4 [Mus musculus]
gi|12846677|dbj|BAB27261.1| unnamed protein product [Mus musculus]
gi|20073103|gb|AAH26747.1| Lsm4 protein [Mus musculus]
gi|26354156|dbj|BAC40708.1| unnamed protein product [Mus musculus]
gi|74198684|dbj|BAE39816.1| unnamed protein product [Mus musculus]
gi|74228648|dbj|BAE25390.1| unnamed protein product [Mus musculus]
gi|148696910|gb|EDL28857.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Mus musculus]
gi|149036057|gb|EDL90723.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
Length = 138
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|345488677|ref|XP_003425963.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Nasonia
vitripennis]
Length = 138
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|209735614|gb|ACI68676.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 150
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|72387630|ref|XP_844239.1| small nuclear ribonucleoprotein SmD3 [Trypanosoma brucei TREU927]
gi|62360517|gb|AAX80930.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma brucei]
gi|70800772|gb|AAZ10680.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261327389|emb|CBH10364.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 115
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
G+P+K+L +A G V++ELK+GELY G++ E DN L + T G+ + V +
Sbjct: 5 GLPLKVLSDAVGTTVSLELKNGELYTGTLSEVVDNMGVLLTSARKTTMAGREVDMPKVLV 64
Query: 66 RGSKVRFMVIPDMLKNAP----MFKRLDARIKGKSSSIGVGRGRA 106
G+ + F +PD L+ P M K L + + G+ G G R+
Sbjct: 65 CGTNIVFFQLPDALRCCPPLMKMGKLLPSDLDGRGDGKGFGAHRS 109
>gi|449542283|gb|EMD33263.1| hypothetical protein CERSUDRAFT_87573 [Ceriporiopsis subvermispora
B]
Length = 132
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 11/124 (8%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G ++ C++ N L + T+ +G + +L+ +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSAEGDRFWKLKECYI 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAP--G 123
RGS ++++ +PD L +A ++ AR G+S+ RG V + A A GRG G
Sbjct: 62 RGSTIKYLRVPDTLLDAVKEEQNRAREAGRSA-----RGAHV---SGAGARGRGMPTRGG 113
Query: 124 RGVV 127
RG+V
Sbjct: 114 RGMV 117
>gi|78706862|ref|NP_001027236.1| CG17768, isoform A [Drosophila melanogaster]
gi|320544912|ref|NP_001188778.1| CG17768, isoform B [Drosophila melanogaster]
gi|45445082|gb|AAF52938.3| CG17768, isoform A [Drosophila melanogaster]
gi|201065957|gb|ACH92388.1| FI07244p [Drosophila melanogaster]
gi|318068412|gb|ADV37028.1| CG17768, isoform B [Drosophila melanogaster]
Length = 154
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L ++ T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|41152340|ref|NP_956990.1| U6 snRNA-associated Sm-like protein LSm4 [Danio rerio]
gi|37589787|gb|AAH59435.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
gi|38328316|gb|AAH62285.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
Length = 143
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|449279546|gb|EMC87118.1| U6 snRNA-associated Sm-like protein LSm4, partial [Columba livia]
Length = 138
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|147902804|ref|NP_001088454.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|54311207|gb|AAH84779.1| LOC495318 protein [Xenopus laevis]
Length = 138
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|47217413|emb|CAG00773.1| unnamed protein product [Tetraodon nigroviridis]
Length = 131
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
IRGS ++++ IPD + + K + GRGR A + K
Sbjct: 61 IRGSTIKYLRIPDEIIDMV-----------KEEVLSKGRGRGGAQQNK 97
>gi|45361593|ref|NP_989371.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|39849973|gb|AAH64199.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
gi|52078460|gb|AAH82491.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
Length = 138
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|209733716|gb|ACI67727.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 147
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|194859892|ref|XP_001969475.1| GG23936 [Drosophila erecta]
gi|190661342|gb|EDV58534.1| GG23936 [Drosophila erecta]
Length = 154
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L ++ T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|350535801|ref|NP_001232447.1| U6 snRNA-associated Sm-like protein LSm4 [Taeniopygia guttata]
gi|363743848|ref|XP_418245.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Gallus
gallus]
gi|197129949|gb|ACH46447.1| putative LSM4 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
Length = 138
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|195146798|ref|XP_002014371.1| GL19160 [Drosophila persimilis]
gi|194106324|gb|EDW28367.1| GL19160 [Drosophila persimilis]
Length = 151
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L ++ T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|348558677|ref|XP_003465143.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Cavia
porcellus]
Length = 139
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|355703322|gb|EHH29813.1| Glycine-rich protein, partial [Macaca mulatta]
gi|440903986|gb|ELR54561.1| U6 snRNA-associated Sm-like protein LSm4, partial [Bos grunniens
mutus]
Length = 139
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|6912486|ref|NP_036453.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Homo sapiens]
gi|78369240|ref|NP_001030513.1| U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|160837874|ref|NP_001104275.1| LSM4 homolog, U6 small nuclear RNA associated [Canis lupus
familiaris]
gi|386780610|ref|NP_001247502.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|296233291|ref|XP_002761949.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Callithrix
jacchus]
gi|297704123|ref|XP_002828970.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pongo abelii]
gi|338718643|ref|XP_001500651.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Equus
caballus]
gi|397493881|ref|XP_003817824.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pan paniscus]
gi|402904782|ref|XP_003915219.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Papio anubis]
gi|410950868|ref|XP_003982124.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Felis catus]
gi|426387786|ref|XP_004060343.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Gorilla gorilla gorilla]
gi|10720082|sp|Q9Y4Z0.1|LSM4_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm4; AltName:
Full=Glycine-rich protein; Short=GRP
gi|109892572|sp|Q3ZBK6.1|LSM4_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|5919149|gb|AAD56228.1|AF182290_1 U6 snRNA-associated Sm-like protein LSm4 [Homo sapiens]
gi|6563244|gb|AAF17216.1|AF117235_1 glycine-rich protein [Homo sapiens]
gi|9623197|gb|AAF90055.1|AF251218_1 LSm4 autoantigen [Homo sapiens]
gi|5262858|emb|CAB45867.1| Lsm4 protein [Homo sapiens]
gi|12653237|gb|AAH00387.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|13177763|gb|AAH03652.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|18645159|gb|AAH22198.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|23273864|gb|AAH23665.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|73587230|gb|AAI03244.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119605092|gb|EAW84686.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|190690627|gb|ACE87088.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|190691985|gb|ACE87767.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|208966682|dbj|BAG73355.1| LSM4 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296486080|tpg|DAA28193.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|380784377|gb|AFE64064.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Macaca
mulatta]
gi|383408443|gb|AFH27435.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|410214894|gb|JAA04666.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410249724|gb|JAA12829.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410289766|gb|JAA23483.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410328789|gb|JAA33341.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
Length = 139
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|427784849|gb|JAA57876.1| Putative small nuclear ribonucleoprotein snrnp [Rhipicephalus
pulchellus]
Length = 142
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIP----DMLKNAPMFK 86
IRGS ++++ IP DM+K + K
Sbjct: 61 IRGSTIKYLRIPDEVIDMVKEETLIK 86
>gi|429965752|gb|ELA47749.1| hypothetical protein VCUG_00710 [Vavraia culicis 'floridensis']
Length = 90
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 54/87 (62%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
L +P+KLL+E +TVEL +G G +++ +D N L+++ T +G ++E +
Sbjct: 3 LSVPLKLLYECENFQLTVELDNGVKVTGKLMQMDDLMNLTLDDVVLTEANGHNIKVERMM 62
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDAR 91
+RGS ++F+V+P +L+++P K + R
Sbjct: 63 VRGSLIQFIVLPPILRHSPFLKADETR 89
>gi|355755618|gb|EHH59365.1| hypothetical protein EGM_09452, partial [Macaca fascicularis]
Length = 138
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 1 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 59
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 60 IRGSTIKYLRIPD 72
>gi|344283091|ref|XP_003413306.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Loxodonta africana]
Length = 151
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEH 62
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++
Sbjct: 12 FQLPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPE 70
Query: 63 VFIRGSKVRFMVIPD 77
+IRGS ++++ IPD
Sbjct: 71 CYIRGSTIKYLRIPD 85
>gi|387016780|gb|AFJ50509.1| u6 snRNA-associated Sm-like protein LSm4-like [Crotalus
adamanteus]
Length = 139
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|389743937|gb|EIM85121.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 130
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G +V C++ N L + T+ DG + +++ +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGENFNGHLVNCDNFMNITLREVYQTSADGERFWKVKECYI 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV---GRGRA 106
RGS ++++ +P+ L + ++L AR GKS G+ GRGR
Sbjct: 62 RGSTIKYIRVPETLLDVVKEEQLRAREAGKSQRGGLNDRGRGRG 105
>gi|414876860|tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea mays]
Length = 172
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|321456471|gb|EFX67578.1| hypothetical protein DAPPUDRAFT_218645 [Daphnia pulex]
Length = 135
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T+KDG + ++ +
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSKDGDRFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|346469961|gb|AEO34825.1| hypothetical protein [Amblyomma maculatum]
Length = 142
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|293335959|ref|NP_001170512.1| uncharacterized LOC100384520 [Zea mays]
gi|238005774|gb|ACR33922.1| unknown [Zea mays]
gi|413947013|gb|AFW79662.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|414876859|tpg|DAA53990.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|417408054|gb|JAA50600.1| Putative small nuclear ribonucleoprotein snrnp, partial [Desmodus
rotundus]
Length = 142
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEH 62
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++
Sbjct: 3 FQLPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPE 61
Query: 63 VFIRGSKVRFMVIPD 77
+IRGS ++++ IPD
Sbjct: 62 CYIRGSTIKYLRIPD 76
>gi|449529475|ref|XP_004171725.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|226491554|ref|NP_001152235.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|195654155|gb|ACG46545.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|242056887|ref|XP_002457589.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
gi|241929564|gb|EES02709.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
Length = 145
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|357129770|ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Brachypodium distachyon]
gi|326528247|dbj|BAJ93305.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|326516310|dbj|BAJ92310.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326521472|dbj|BAK00312.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|449526219|ref|XP_004170111.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|157109644|ref|XP_001650762.1| small nuclear ribonucleoprotein sm [Aedes aegypti]
gi|108878946|gb|EAT43171.1| AAEL005355-PA [Aedes aegypti]
Length = 154
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|351701223|gb|EHB04142.1| U6 snRNA-associated Sm-like protein LSm4, partial [Heterocephalus
glaber]
Length = 117
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|38047763|gb|AAR09784.1| similar to Drosophila melanogaster CG17768, partial [Drosophila
yakuba]
Length = 152
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIR 66
P+ LL A H + VELK+GE Y G +V C+ N L ++ T+KDG + ++ +IR
Sbjct: 1 PLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIR 60
Query: 67 GSKVRFMVIPD 77
GS ++++ IPD
Sbjct: 61 GSTIKYLRIPD 71
>gi|170578381|ref|XP_001894384.1| Probable U6 snRNA-associated Sm-like protein LSm4 [Brugia malayi]
gi|158599053|gb|EDP36777.1| Probable U6 snRNA-associated Sm-like protein LSm4, putative [Brugia
malayi]
Length = 163
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHV 63
L +P+ LL A H + VELK+GE Y G +V C+ N L + T++DG + +++ V
Sbjct: 32 LQLPLSLLRTAQNHPMLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEV 91
Query: 64 FIRGSKVRFMVIPD 77
++RGS ++++ IPD
Sbjct: 92 YVRGSTIKYLRIPD 105
>gi|253735672|ref|NP_001156694.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239791415|dbj|BAH72178.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T+KDG + +L +I
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVTCDSWMNINLREVICTSKDGDRFWRLPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSMIKYLRIPD 73
>gi|242247021|ref|NP_001156271.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239790147|dbj|BAH71652.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T+KDG + +L +I
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVTCDSWMNINLREVICTSKDGDRFWRLPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSMIKYLRIPD 73
>gi|195434128|ref|XP_002065055.1| GK14878 [Drosophila willistoni]
gi|194161140|gb|EDW76041.1| GK14878 [Drosophila willistoni]
Length = 303
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L ++ T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|118790653|ref|XP_318746.3| AGAP009687-PA [Anopheles gambiae str. PEST]
gi|116118049|gb|EAA14138.4| AGAP009687-PA [Anopheles gambiae str. PEST]
Length = 157
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|449672414|ref|XP_002167952.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Hydra
magnipapillata]
Length = 128
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL + H + VELK+GE Y G +V C DNW N L + T++DG + ++ +
Sbjct: 3 LPLTLLQTSQNHPMLVELKNGETYNGHLVTC-DNWMNINLREVICTSRDGDRFWRMSQCY 61
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSI 99
IRGS ++++ IPD + M K R K KS ++
Sbjct: 62 IRGSTIKYLRIPDEV--IDMVKEDIQRNKQKSQAV 94
>gi|427778567|gb|JAA54735.1| Putative small nuclear ribonucleoprotein snrnp [Rhipicephalus
pulchellus]
Length = 167
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVFI 65
P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +I
Sbjct: 28 PLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECYI 86
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 87 RGSTIKYLRIPD 98
>gi|393905582|gb|EFO18954.2| hypothetical protein LOAG_09541 [Loa loa]
Length = 135
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELKSGE Y G +V C+ N L + T++DG + +++ V++
Sbjct: 3 LPLSLLRTAQNHPMLVELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYV 62
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 63 RGSTIKYLRIPD 74
>gi|218187914|gb|EEC70341.1| hypothetical protein OsI_01238 [Oryza sativa Indica Group]
Length = 147
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|149571864|ref|XP_001512156.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like, partial
[Ornithorhynchus anatinus]
Length = 138
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 1 LPLSLLKTAQNHPYLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 59
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 60 IRGSTIKYLRIPD 72
>gi|328780963|ref|XP_624908.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Apis
mellifera]
Length = 138
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T++DG K ++ +I
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|115435742|ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|108792648|dbj|BAE95809.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|113532160|dbj|BAF04543.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|215704752|dbj|BAG94780.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618133|gb|EEE54265.1| hypothetical protein OsJ_01157 [Oryza sativa Japonica Group]
Length = 147
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|328774253|gb|EGF84290.1| hypothetical protein BATDEDRAFT_85018 [Batrachochytrium
dendrobatidis JAM81]
Length = 132
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL++A GH + +ELK+G+ + G +V C+ N L + T+ DG K ++ ++I
Sbjct: 2 LPLSLLNKAQGHPMLIELKNGDTFNGHLVNCDPYMNVNLREVIRTSADGEKFWKIPEIYI 61
Query: 66 RGSKVRFMVIPDML 79
RGS ++++ +PD +
Sbjct: 62 RGSTIKYLRVPDEI 75
>gi|340376985|ref|XP_003387011.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Amphimedon queenslandica]
Length = 125
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEH 62
+ +P+ LL A + + VELK+GE Y G +V C DNW N QL+ + T++DG + ++
Sbjct: 2 VSLPLSLLKAAQDNPMLVELKNGETYNGHLVSC-DNWMNIQLKEVICTSRDGDRFWKMPE 60
Query: 63 VFIRGSKVRFMVIPD 77
FIRGS ++++ IPD
Sbjct: 61 CFIRGSMIKYLRIPD 75
>gi|242207126|ref|XP_002469417.1| predicted protein [Postia placenta Mad-698-R]
gi|220731446|gb|EED85290.1| predicted protein [Postia placenta Mad-698-R]
Length = 106
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G +V C++ N L + T DG + +L+ +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDRFWKLKECYI 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 97
RGS ++++ +PD L +A ++ AR G+S+
Sbjct: 62 RGSTIKYLRVPDTLLDAVKEEQNKAREAGRSA 93
>gi|313241313|emb|CBY33589.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGK-VSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N QL + T++DG ++ +
Sbjct: 2 LPLSLLKTAVNHPMLVELKNGETYNGHLVNC-DNWMNLQLREVICTSRDGDHFWRMNECY 60
Query: 65 IRGSKVRFMVIPD 77
+RGS ++++ IPD
Sbjct: 61 VRGSTIKYLRIPD 73
>gi|313236950|emb|CBY12197.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGK-VSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N QL + T++DG ++ +
Sbjct: 2 LPLSLLKTAVNHPMLVELKNGETYNGHLVNC-DNWMNLQLREVICTSRDGDHFWRMNECY 60
Query: 65 IRGSKVRFMVIPD 77
+RGS ++++ IPD
Sbjct: 61 VRGSTIKYLRIPD 73
>gi|357511251|ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|357516335|ref|XP_003628456.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355500929|gb|AES82132.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355522478|gb|AET02932.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 150
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|340383285|ref|XP_003390148.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Amphimedon queenslandica]
Length = 93
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEH 62
+ +P+ LL A + + VELK+GE Y G +V C DNW N QL+ + T++DG + ++
Sbjct: 2 VSLPLSLLKAAQDNPMLVELKNGETYNGHLVSC-DNWMNIQLKEVICTSRDGERFWKMPE 60
Query: 63 VFIRGSKVRFMVIPD 77
FIRGS +++ IPD
Sbjct: 61 CFIRGSMTKYLRIPD 75
>gi|328876176|gb|EGG24539.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 162
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL GH + VELK+GE Y G +V C DNW N + + T+KD K +L+ +
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGILVNC-DNWMNINMRTVIRTSKDSDKFWKLQGCY 60
Query: 65 IRGSKVRFMVIPD 77
IRG+ ++++ +PD
Sbjct: 61 IRGNTIKYITVPD 73
>gi|350409693|ref|XP_003488818.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Bombus
impatiens]
gi|380028027|ref|XP_003697713.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Apis
florea]
Length = 139
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T++DG K ++ +I
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 62 RGSTIKYLRIPD 73
>gi|307107546|gb|EFN55788.1| hypothetical protein CHLNCDRAFT_22901 [Chlorella variabilis]
Length = 132
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A+ H V +ELK+GE Y G MV+C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLVLLKTAAAHPVLIELKNGETYNGHMVQCDTWMNIHLREVICTSKDGDRFWRMPEAYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|395328270|gb|EJF60663.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 132
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 9/115 (7%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G +V C++ N L + T+ +G K +L +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLRECYI 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
RGS ++++ +PD L +A ++ AR G+S+ RG V + A GRGA
Sbjct: 62 RGSTIKYLRVPDTLLDAVKEEQNRAREAGRSA-----RGAHV---SGAGQRGRGA 108
>gi|390335655|ref|XP_783129.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Strongylocentrotus purpuratus]
Length = 161
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG + ++ +
Sbjct: 29 LPLSLLRTAQNHPMLVELKNGETYNGHLVAC-DNWMNINLREVICTSRDGDRFWRMPECY 87
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 88 IRGSTIKYLRIPD 100
>gi|297743868|emb|CBI36838.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 48 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 107
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 108 RGNTIKYLRVPD 119
>gi|225437330|ref|XP_002264738.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 150
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 3656 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 3715
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 3716 RGNTIKYLRVPD 3727
>gi|12834762|dbj|BAB23033.1| unnamed protein product [Mus musculus]
Length = 138
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T+ DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSLDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|225450786|ref|XP_002283804.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 149
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|77745469|gb|ABB02633.1| glycine rich protein-like [Solanum tuberosum]
gi|82623401|gb|ABB87115.1| glycine rich protein-like [Solanum tuberosum]
Length = 147
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|340718599|ref|XP_003397752.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like isoform
1 [Bombus terrestris]
Length = 154
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T++DG K ++ +I
Sbjct: 17 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYI 76
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 77 RGSTIKYLRIPD 88
>gi|405977571|gb|EKC42014.1| UPF0632 protein A [Crassostrea gigas]
Length = 697
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG + ++ +
Sbjct: 8 LPLSLLRTAVNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDRFWRMPECY 66
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 67 IRGSTIKYLRIPD 79
>gi|356572732|ref|XP_003554520.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 148
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|224064436|ref|XP_002301475.1| predicted protein [Populus trichocarpa]
gi|222843201|gb|EEE80748.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|296089694|emb|CBI39513.3| unnamed protein product [Vitis vinifera]
Length = 162
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 15 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 74
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 75 RGNTIKYLRVPD 86
>gi|255564128|ref|XP_002523061.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
gi|223537623|gb|EEF39246.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
Length = 147
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|242212742|ref|XP_002472203.1| predicted protein [Postia placenta Mad-698-R]
gi|220728761|gb|EED82649.1| predicted protein [Postia placenta Mad-698-R]
Length = 96
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G +V C++ N L + T DG + +L+ +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDRFWKLKECYI 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 97
RGS ++++ +PD L +A ++ AR G+S+
Sbjct: 62 RGSTIKYLRVPDTLLDAVKEEQNKAREAGRSA 93
>gi|390362890|ref|XP_003730251.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Strongylocentrotus purpuratus]
Length = 151
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG + ++ +
Sbjct: 29 LPLSLLRTAQNHPMLVELKNGETYNGHLVAC-DNWMNINLREVICTSRDGDRFWRMPECY 87
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 88 IRGSTIKYLRIPD 100
>gi|303279759|ref|XP_003059172.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459008|gb|EEH56304.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 129
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L+ + T+KDG + ++ + ++
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVSCDTWMNVHLKEVICTSKDGDRFWRMANCYV 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYVCVPD 73
>gi|297812937|ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
gi|297320189|gb|EFH50611.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|443711054|gb|ELU05001.1| hypothetical protein CAPTEDRAFT_200433 [Capitella teleta]
Length = 136
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N + + T++DG + ++ +
Sbjct: 2 LPLSLLRTAVNHPMLVELKNGETYNGHLVSC-DNWMNINMREVICTSRDGDRFWRMPECY 60
Query: 65 IRGSKVRFMVIP----DMLKNAPMFKRLDARIKGK 95
+RGS ++++ IP DM+K M K R+ GK
Sbjct: 61 VRGSTIKYLRIPDEIIDMVKEDNMMKH-KGRVDGK 94
>gi|357519603|ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355524112|gb|AET04566.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 161
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPDMLKNA-----PMFKR-----LDARIKGKSSSIGVGRGRAVAMRAKAAA 115
RG+ ++++ +PD + N F++ + + + + VGR V + AK A
Sbjct: 62 RGNTIKYLRVPDEVCNGVDWLLTKFRKKRAVQIASHLVWDVVGVEVGRMLLVLVDAKQKA 121
Query: 116 AG 117
G
Sbjct: 122 LG 123
>gi|255629165|gb|ACU14927.1| unknown [Glycine max]
Length = 148
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|15241028|ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
gi|332006335|gb|AED93718.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
Length = 129
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|21593495|gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|391339536|ref|XP_003744104.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Metaseiulus occidentalis]
Length = 116
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T+++G K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSREGDKFWRIPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRG+ +RF+ IPD
Sbjct: 61 IRGNTIRFLRIPD 73
>gi|383858764|ref|XP_003704869.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Megachile rotundata]
Length = 158
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHV 63
+ +P+ LL A H + VELK+GE Y G +V C+ N L + T++DG K ++
Sbjct: 19 VDLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPEC 78
Query: 64 FIRGSKVRFMVIPD 77
+IRGS ++++ IPD
Sbjct: 79 YIRGSTIKYLRIPD 92
>gi|189197851|ref|XP_001935263.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187981211|gb|EDU47837.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 131
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A+GH + VELKSGE G +V C+ N L + T+ DG K +L +++
Sbjct: 2 LPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMKLPEIYV 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ +PD
Sbjct: 62 RGSTIKYLRVPD 73
>gi|414876858|tpg|DAA53989.1| TPA: hypothetical protein ZEAMMB73_426325, partial [Zea mays]
Length = 112
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|384254045|gb|EIE27519.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 117
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H V VELK+GE Y G MV+C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLLLLKTAQKHPVLVELKNGETYNGHMVQCDSWMNVHLREVICTSKDGDRFWRIPETYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|356500280|ref|XP_003518961.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 149
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|452001361|gb|EMD93821.1| hypothetical protein COCHEDRAFT_1154389 [Cochliobolus
heterostrophus C5]
Length = 134
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A+GH + VELKSGE G +V C+ N L + T+ DG K +L +++
Sbjct: 2 LPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYV 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ +PD
Sbjct: 62 RGSTIKYLRVPD 73
>gi|451849184|gb|EMD62488.1| hypothetical protein COCSADRAFT_221383 [Cochliobolus sativus
ND90Pr]
Length = 141
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A+GH + VELKSGE G +V C+ N L + T+ DG K +L +++
Sbjct: 2 LPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYV 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ +PD
Sbjct: 62 RGSTIKYLRVPD 73
>gi|430813206|emb|CCJ29431.1| unnamed protein product [Pneumocystis jirovecii]
Length = 639
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 15 ASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFM 73
A G+ + VELK+GE Y G MV C+ N L+ + T DG + +L +IRGS ++++
Sbjct: 519 AQGYPMLVELKNGETYNGHMVSCDTWMNLILKEVIQTNADGDRFFRLSECYIRGSTIKYL 578
Query: 74 VIPDMLKNAPMFKRLDARIKGKSSSI-----GVGRGRAVAMRAKAAAAGRGAAPGRGVV 127
IPD + N + R I G+ GR M+ GR + GRG +
Sbjct: 579 RIPDEIINIVKLQNEQNRDNRSQRGISRGGRGINLGRGRGMQNIQGRGGRTSDRGRGRI 637
>gi|308158291|gb|EFO61046.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia lamblia
P15]
Length = 90
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
++ P++LL EA V+VE ++G +Y G +V E + + N T T G+ + V
Sbjct: 2 TITAPIQLLFEAIDMRVSVETRAGTIYEGKLVSVEPTLSVTISNCTITHPTGQREIAQTV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARI 92
+RGS+VRF+ +P L ++P+ K+ + +I
Sbjct: 62 MLRGSEVRFVSVPSALVDSPVLKQGNRKI 90
>gi|253746256|gb|EET01663.1| Small nuclear ribonucleoprotein Sm D3, putative [Giardia
intestinalis ATCC 50581]
Length = 90
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRG 67
PV+LL EA V+VE +SG +Y G + E + + + T T G+ V +RG
Sbjct: 6 PVQLLFEAIDMRVSVESRSGIIYEGKLASVEPTLSVIISDCTITHPTGQKETAHTVMLRG 65
Query: 68 SKVRFMVIPDMLKNAPMFKRLDARI 92
S+VRF+ +PD L N+P+ K+ + +I
Sbjct: 66 SEVRFVSVPDALMNSPVLKQGNRKI 90
>gi|391338956|ref|XP_003743819.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Metaseiulus occidentalis]
Length = 116
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T+++G K ++ +
Sbjct: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSREGDKFWRIPECY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ +RF+ IPD
Sbjct: 61 VRGNTIRFLRIPD 73
>gi|195655461|gb|ACG47198.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYX 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|294463283|gb|ADE77177.1| unknown [Picea sitchensis]
Length = 146
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLRTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD-MLKNAPMFKRLDAR 91
RG+ ++++ +PD ++ KR+D +
Sbjct: 62 RGNTIKYLRVPDEVIDKVQEEKRIDRK 88
>gi|260793240|ref|XP_002591620.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
gi|229276829|gb|EEN47631.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
Length = 126
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G + C DNW N +L ++ T++DG + ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLEAC-DNWMNIKLRDVICTSRDGDRFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>gi|326432761|gb|EGD78331.1| hypothetical protein PTSG_09397 [Salpingoeca sp. ATCC 50818]
Length = 115
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ L+ A H + VELK+GE Y G +V C+ N L +T T+KDG + +L+ +I
Sbjct: 2 LPLSLIRAAVNHPMLVELKNGESYNGHLVNCDHYMNIILRGVTLTSKDGDRFWKLKECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ +PD
Sbjct: 62 RGSTIKYLRLPD 73
>gi|392560868|gb|EIW54050.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 161
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVF 64
G+P+ LL+ A + VELK+GE + G +V C++ N L T+ +G + +L+ +
Sbjct: 31 GLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREAYQTSAEGDRFWKLKECY 90
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 97
IRGS ++++ +PD L +A ++ AR G+S+
Sbjct: 91 IRGSTIKYLRVPDTLLDAVKDEQNRAREAGRSA 123
>gi|168013104|ref|XP_001759241.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689554|gb|EDQ75925.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|198436639|ref|XP_002128141.1| PREDICTED: similar to GL19160 isoform 1 [Ciona intestinalis]
Length = 127
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGK-VSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG ++ +
Sbjct: 2 LPLSLLKTAVNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDHFWRMPECY 60
Query: 65 IRGSKVRFMVIP----DMLKNAPMFK 86
IRGS ++++ IP DM+K M K
Sbjct: 61 IRGSTIKYLRIPDEVIDMVKEDSMSK 86
>gi|402581860|gb|EJW75807.1| small nuclear ribonucleoprotein, partial [Wuchereria bancrofti]
Length = 123
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T++DG + +++ V++
Sbjct: 1 MPLSLLRTAQNHPMLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYV 60
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 61 RGSTIKYLRIPD 72
>gi|324507721|gb|ADY43268.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 130
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T++DG + ++ V++
Sbjct: 3 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEVYV 62
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 63 RGSTIKYLRIPD 74
>gi|449443839|ref|XP_004139683.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 88
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|223974607|gb|ACN31491.1| unknown [Zea mays]
Length = 146
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VE K+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVEPKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|224131146|ref|XP_002321012.1| predicted protein [Populus trichocarpa]
gi|222861785|gb|EEE99327.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + + +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRTPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|440494060|gb|ELQ76472.1| Small nuclear ribonucleoprotein Sm D3 [Trachipleistophora
hominis]
Length = 90
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 50/81 (61%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
+P+KLL+E +TVEL +G G +V+ +D N L+++ T +G +++E + +
Sbjct: 4 SVPLKLLYECENFQLTVELDNGTKATGKLVQVDDLMNLTLDDVVLTEINGHNTRIERMMV 63
Query: 66 RGSKVRFMVIPDMLKNAPMFK 86
RGS ++ +++P +L+ +P K
Sbjct: 64 RGSLIQLIILPPILQYSPFLK 84
>gi|342180491|emb|CCC89967.1| putative small nuclear ribonucleoprotein SmD3 [Trypanosoma
congolense IL3000]
Length = 115
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
IP+K+L++A G V++ELK+GELY G++ E +N L + T G+ + V +
Sbjct: 6 IPLKVLYDAVGTTVSLELKNGELYTGTLSELVENMGVVLTSARKTTMAGREVDMPTVLVS 65
Query: 67 GSKVRFMVIPDMLKNAP 83
G + F +PD L+ +P
Sbjct: 66 GKNIVFFQLPDALQASP 82
>gi|453080718|gb|EMF08768.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 132
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + +G++ N L N T K G L+HV IRGS
Sbjct: 4 VRFLMKCSNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMTPKGGSQISLDHVSIRGS 63
Query: 69 KVRFMVIPDML 79
++R+ ++PD L
Sbjct: 64 EIRYYILPDSL 74
>gi|156395605|ref|XP_001637201.1| predicted protein [Nematostella vectensis]
gi|156224311|gb|EDO45138.1| predicted protein [Nematostella vectensis]
Length = 137
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T++DG K ++ ++
Sbjct: 3 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSRDGDKFWKIPECYV 62
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 63 RGSNIKYLRIPD 74
>gi|20260282|gb|AAM13039.1| unknown protein [Arabidopsis thaliana]
gi|22136528|gb|AAM91342.1| unknown protein [Arabidopsis thaliana]
Length = 129
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ L A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLFKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>gi|452986281|gb|EME86037.1| hypothetical protein MYCFIDRAFT_130274, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 126
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LLH A GH + VELK+GE G +V C+ N L+ + T+ +G K +L ++
Sbjct: 2 LPLGLLHAAQGHPMLVELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECYV 61
Query: 66 RGSKVRFMVIPDMLKNA 82
RG+ ++++ +PD + +A
Sbjct: 62 RGNNIKYLRVPDEVVDA 78
>gi|255076339|ref|XP_002501844.1| predicted protein [Micromonas sp. RCC299]
gi|226517108|gb|ACO63102.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL + GH + VELK+GE Y G +V C+ N L + T+KDG + ++ + ++
Sbjct: 2 LPLSLLKTSQGHPMLVELKNGETYNGHLVSCDTWMNVHLREVICTSKDGDRFWRMANCYV 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYICVPD 73
>gi|47028321|gb|AAT09093.1| U6 snRNA-associated Sm like protein [Bigelowiella natans]
Length = 119
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VEL++GE Y G +V C DNW N + + T++DG + Q++ +
Sbjct: 2 LPLSLLRTAVGHPMLVELRNGETYNGHLVSC-DNWMNLLIRGVICTSRDGERFWQMDECY 60
Query: 65 IRGSKVRFMVIPD 77
I+G+ ++++ IPD
Sbjct: 61 IKGNTIKYLRIPD 73
>gi|324523014|gb|ADY48174.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 166
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C+ N L + T++DG + ++ V++
Sbjct: 39 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEVYV 98
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IPD
Sbjct: 99 RGSTIKYLRIPD 110
>gi|294932805|ref|XP_002780450.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239890384|gb|EER12245.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 126
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A G + VELK+GE Y G + C+ N + + T+KDG + +L +I
Sbjct: 3 LPMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYI 62
Query: 66 RGSKVRFMVIPD 77
RG+ V+++ IPD
Sbjct: 63 RGNHVKYLRIPD 74
>gi|308804932|ref|XP_003079778.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
gi|116058235|emb|CAL53424.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
Length = 779
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL + G + VELK+GE Y G++ C+ N L+ + T+KDG + ++E ++
Sbjct: 660 LPLTLLKTSCGRPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMEECYV 719
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 720 RGNTIKYVCVPD 731
>gi|17533617|ref|NP_495514.1| Protein LSM-4 [Caenorhabditis elegans]
gi|12230257|sp|Q19952.1|LSM4_CAEEL RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|351065126|emb|CCD66279.1| Protein LSM-4 [Caenorhabditis elegans]
Length = 123
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G + C+ N L ++ +T+KDG K ++ ++
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IP+
Sbjct: 63 RGSTIKYLRIPE 74
>gi|219124066|ref|XP_002182333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406294|gb|EEC46234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 135
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGK-VSQLEHVFI 65
+P+ LL A+G + VELK G+ Y G +V C+ N L+++ T+ DG+ S+L +I
Sbjct: 2 LPLTLLRAANGSPILVELKGGDTYNGRVVNCDTFMNMNLQDVICTSADGEHFSKLPSCYI 61
Query: 66 RGSKVRFMVIPDML 79
RGS ++++ +P L
Sbjct: 62 RGSSIKYLRLPPSL 75
>gi|294866382|ref|XP_002764688.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
gi|239864378|gb|EEQ97405.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
Length = 349
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A G + VELK+GE Y G + C D+W N + + T+KDG + +L +
Sbjct: 3 LPMSLLKTAQGQPIMVELKNGEAYSGVLANC-DSWMNLHIRDAVLTSKDGDRFWKLAEAY 61
Query: 65 IRGSKVRFMVIPD 77
IRG+ ++++ IPD
Sbjct: 62 IRGNHIKYLRIPD 74
>gi|237839011|ref|XP_002368803.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211966467|gb|EEB01663.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221481300|gb|EEE19694.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221502024|gb|EEE27770.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 121
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + +ELK+G + G++V + + N L+N+ T K G + LEH+ IRG+
Sbjct: 4 VRFLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTMKQGNPTSLEHLTIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|145347482|ref|XP_001418193.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578422|gb|ABO96486.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL + GH + VELK+GE Y G++ C+ N L+ + T+KDG + ++ ++
Sbjct: 2 LPLTLLKTSCGHPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAECYV 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYVCVPD 73
>gi|330038680|ref|XP_003239668.1| small nuclear ribonucleoprotein Sm D3 [Cryptomonas paramecium]
gi|327206592|gb|AEA38770.1| small nuclear ribonucleoprotein Sm D3 [Cryptomonas paramecium]
Length = 84
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
IP+ LL E ++VT+E ++G YRGS+ E N NC L++ D K + +F+
Sbjct: 4 SIPINLLLETKPYIVTIETRNGTKYRGSLNFIEKNMNCCLKD-AIVLTDMKKKKFNSIFL 62
Query: 66 RGSKVRFMVIPDML 79
RG+ + +++PDML
Sbjct: 63 RGNSIVVIMLPDML 76
>gi|195995525|ref|XP_002107631.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190588407|gb|EDV28429.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 96
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G +V C++ N L + T+KDG + ++ ++
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVNCDNFMNINLREVICTSKDGDRFWKMPECYL 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ IPD
Sbjct: 62 RGNMIKYLRIPD 73
>gi|398390838|ref|XP_003848879.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
gi|339468755|gb|EGP83855.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
Length = 129
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V C+ N L+ + T+ DG K +L ++
Sbjct: 2 LPLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKFFRLPECYV 61
Query: 66 RGSKVRFMVIPDMLKNA 82
RG+ ++++ +PD + +A
Sbjct: 62 RGNNIKYLRVPDEVVDA 78
>gi|341899817|gb|EGT55752.1| CBN-LSM-4 protein [Caenorhabditis brenneri]
Length = 123
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G + C+ N L ++ +T+KDG K ++ ++
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IP+
Sbjct: 63 RGSTIKYLRIPE 74
>gi|56757161|gb|AAW26752.1| SJCHGC06377 protein [Schistosoma japonicum]
gi|226490214|emb|CAX69349.1| putative U6 snRNA-associated Sm-like protein LSm4 [Schistosoma
japonicum]
Length = 128
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDMLK 80
VELKSGE Y G +V C+D N L+ + T++DG + ++ +IRGS ++++ IPD +
Sbjct: 3 VELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYIRGSIIKYLRIPDDVI 62
Query: 81 NAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAA 121
+ A+++ +S S GRG +AK GRG +
Sbjct: 63 DKVKEDLQLAKMRNRSQSADTGRGGFHRNKAK----GRGGS 99
>gi|268562665|ref|XP_002646730.1| C. briggsae CBR-LSM-4 protein [Caenorhabditis briggsae]
Length = 124
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G + C+ N L ++ +T+KDG K ++ ++
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IP+
Sbjct: 63 RGSTIKYLRIPE 74
>gi|308503320|ref|XP_003113844.1| CRE-LSM-4 protein [Caenorhabditis remanei]
gi|308263803|gb|EFP07756.1| CRE-LSM-4 protein [Caenorhabditis remanei]
Length = 123
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G + C+ N L ++ +T+KDG K ++ ++
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IP+
Sbjct: 63 RGSTIKYLRIPE 74
>gi|398389859|ref|XP_003848390.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici
IPO323]
gi|339468265|gb|EGP83366.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici
IPO323]
Length = 133
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + +G++ N L N T + G LEHV IRGS
Sbjct: 4 VRFLMKCTNETVTIELKTGTIVQGTIASISPQMNTNLRNAKMTPRGGSQIALEHVSIRGS 63
Query: 69 KVRFMVIPDML 79
++R+ ++PD L
Sbjct: 64 EIRYYILPDSL 74
>gi|392591224|gb|EIW80552.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 127
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A + VELK+GE + G +V C++ N L + T+ DG + +L+ +I
Sbjct: 2 LPLSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECYI 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 97
RGS ++++ +PD L + +L AR +++
Sbjct: 62 RGSTIKYLRVPDQLLDVVKEDQLRAREANRTT 93
>gi|226372678|gb|ACO51964.1| U7 snRNA-associated Sm-like protein LSm10 [Rana catesbeiana]
Length = 121
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL GH TVEL+ +GS++ + N +LE +TYT + GK S+L+ +FI G
Sbjct: 18 VILLQGLHGHATTVELRDESSAKGSVINVDAFMNVRLEKVTYTDRRGKESKLDDLFINGR 77
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
VR++ IP+ + + +I+G G GR V+ + K
Sbjct: 78 NVRYIHIPEEVDIIHTIEERLKKIQGIRGFGGKGRKEFVSKKCK 121
>gi|401400718|ref|XP_003880841.1| sm protein, related [Neospora caninum Liverpool]
gi|325115253|emb|CBZ50808.1| sm protein, related [Neospora caninum Liverpool]
Length = 121
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + +ELK+G + G++V + + N L+N+ T K G + LEH+ IRG+
Sbjct: 4 VRFLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTLKHGNPTSLEHLTIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|409080918|gb|EKM81278.1| hypothetical protein AGABI1DRAFT_112946 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197836|gb|EKV47763.1| hypothetical protein AGABI2DRAFT_192916 [Agaricus bisporus var.
bisporus H97]
Length = 131
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A + VELK+GE + G +V C++ N L + T+ DG + +L+ +I
Sbjct: 2 LPLSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECYI 61
Query: 66 RGSKVRFMVIPDML 79
RGS ++++ +PD L
Sbjct: 62 RGSTIKYLRVPDTL 75
>gi|296415636|ref|XP_002837492.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633364|emb|CAZ81683.1| unnamed protein product [Tuber melanosporum]
Length = 249
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L+ + T+ +G K +L ++
Sbjct: 117 LPLSLLNTAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKFFRLAECYV 176
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 177 RGNNIKYLRVPD 188
>gi|452845143|gb|EME47076.1| hypothetical protein DOTSEDRAFT_124881, partial [Dothistroma
septosporum NZE10]
Length = 126
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V C+ N L+ + T+ DG K +L ++
Sbjct: 2 LPLGLLTAAQGHPMLVELKTGETLNGHLVACDTYMNITLKEVVQTSPDGDKFFRLPECYV 61
Query: 66 RGSKVRFMVIPDMLKNA 82
RG+ ++++ +PD + +A
Sbjct: 62 RGNNIKYLRVPDEVVDA 78
>gi|452837979|gb|EME39920.1| hypothetical protein DOTSEDRAFT_74704 [Dothistroma septosporum
NZE10]
Length = 131
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + +G++ N L N T K G L+H+ IRGS
Sbjct: 4 VRFLMKCTNETVTIELKTGTIVQGTVASVSPQMNTNLRNAKMTPKGGSQISLDHISIRGS 63
Query: 69 KVRFMVIPDML 79
++R+ ++PD L
Sbjct: 64 EIRYYILPDSL 74
>gi|154311062|ref|XP_001554861.1| hypothetical protein BC1G_06649 [Botryotinia fuckeliana B05.10]
Length = 690
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK GE G +V C+ N L+ + T+ DG K ++L +++
Sbjct: 3 LPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYV 62
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 63 KGNNIKYLRMPD 74
>gi|412992977|emb|CCO16510.1| U6 snRNA-associated Sm-like protein LSm4 [Bathycoccus prasinos]
Length = 122
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL + GH + VELK+GE Y G + C+ N L + T KDG + +LE FI
Sbjct: 2 LPLSLLKTSQGHSMLVELKNGETYNGVLNACDAWMNVHLTKVVCTNKDGDRFHELETCFI 61
Query: 66 RGSKVRFMVIPD 77
RG+ +++M + +
Sbjct: 62 RGNTIKYMCVQE 73
>gi|348673931|gb|EGZ13750.1| hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae]
Length = 153
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+G+ Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 4 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYI 63
Query: 66 RGSKVRFMVIP----DMLKNAPMFKR 87
RG+ ++++ +P DM+ KR
Sbjct: 64 RGNTIKYIRVPNEILDMVNEEDFSKR 89
>gi|302681117|ref|XP_003030240.1| hypothetical protein SCHCODRAFT_57519 [Schizophyllum commune
H4-8]
gi|300103931|gb|EFI95337.1| hypothetical protein SCHCODRAFT_57519 [Schizophyllum commune
H4-8]
Length = 129
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A + VELK+GE + G +V C++ N L + T DG K +L+ +I
Sbjct: 2 LPLSLLTAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDKFWKLKECYI 61
Query: 66 RGSKVRFMVIPDML 79
RGS ++++ IPD L
Sbjct: 62 RGSTIKYLRIPDEL 75
>gi|301108303|ref|XP_002903233.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
gi|262097605|gb|EEY55657.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
Length = 82
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+G+ Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +P+
Sbjct: 62 RGNTIKYIRVPN 73
>gi|169606003|ref|XP_001796422.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
gi|111065978|gb|EAT87098.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
Length = 187
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 11 LLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSK 69
LL A+GH + VELKSGE G +V C+ N L + T+ DG K +L +++RGS
Sbjct: 66 LLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGST 125
Query: 70 VRFMVIPD 77
++++ +PD
Sbjct: 126 IKYLRVPD 133
>gi|301108373|ref|XP_002903268.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
gi|262097640|gb|EEY55692.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
Length = 79
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+G+ Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +P+
Sbjct: 62 RGNTIKYIRVPN 73
>gi|395513176|ref|XP_003760805.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Sarcophilus
harrisii]
Length = 152
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 15 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 73
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGR 103
IRGS ++++ IPD + + K + GR
Sbjct: 74 IRGSTIKYLRIPDEIIDMV-----------KEEVVSKGR 101
>gi|296812049|ref|XP_002846362.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
gi|238841618|gb|EEQ31280.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
Length = 126
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHV 63
+P+ LL+ A GH + VELK+GE G +V C DNW N L+ + T+ +G + +L V
Sbjct: 7 ALPLGLLNAAQGHPMLVELKNGETLNGHLVNC-DNWMNLTLKEVVQTSPEGDRFFRLPEV 65
Query: 64 FIRGSKVRFMVIPD 77
++RG+ ++++ +P+
Sbjct: 66 YVRGNNIKYLRVPE 79
>gi|156034609|ref|XP_001585723.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980]
gi|154698643|gb|EDN98381.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 122
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK GE G +V C+ N L+ + T+ DG K ++L +++
Sbjct: 3 LPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYV 62
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 63 KGNNIKYLRMPD 74
>gi|452978143|gb|EME77907.1| hypothetical protein MYCFIDRAFT_57424 [Pseudocercospora fijiensis
CIRAD86]
Length = 129
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + +G++ N L N T K G L+H+ +RGS
Sbjct: 4 VRFLMKCTNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMTPKGGSQISLDHISVRGS 63
Query: 69 KVRFMVIPDML 79
++R+ ++PD L
Sbjct: 64 EIRYYILPDSL 74
>gi|315051216|ref|XP_003174982.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
gi|311340297|gb|EFQ99499.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
Length = 124
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL+ A GH + VELK+GE G +V C DNW N L+ + T+ +G + +L V+
Sbjct: 5 LPLGLLNAAQGHPMLVELKNGETLNGHLVNC-DNWMNLTLKEVVQTSPEGDRFFRLPEVY 63
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 64 VRGNNIKYLRVPE 76
>gi|294881583|ref|XP_002769420.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239872829|gb|EER02138.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 137
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A G + VELK+GE Y G + C+ N + + T+KDG + +L +I
Sbjct: 3 LPMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYI 62
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ IPD
Sbjct: 63 RGNHIKYLRIPD 74
>gi|347837957|emb|CCD52529.1| hypothetical protein [Botryotinia fuckeliana]
Length = 122
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK GE G +V C+ N L+ + T+ DG K ++L +++
Sbjct: 3 LPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYV 62
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 63 KGNNIKYLRMPD 74
>gi|299750975|ref|XP_001829959.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
gi|298409160|gb|EAU91881.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
Length = 129
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G +V C++ N L + T+ +G + +L+ +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLKECYI 61
Query: 66 RGSKVRFMVIPDMLKNA 82
RGS ++++ +PD L +A
Sbjct: 62 RGSTIKYLRVPDQLLDA 78
>gi|327304028|ref|XP_003236706.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326462048|gb|EGD87501.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 121
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 10/100 (10%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLTLKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
+RG+ ++++ +P+ + + AR + +S G RG
Sbjct: 61 VRGNNIKYLRVPEEVVDL-------ARDQQQSQQSGRNRG 93
>gi|409044160|gb|EKM53642.1| hypothetical protein PHACADRAFT_260106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 130
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G +V C++ N L + T+ +G K +L+ +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLKECYI 61
Query: 66 RGSKVRFMVIPDML 79
RGS ++++ +PD L
Sbjct: 62 RGSTIKYLRVPDQL 75
>gi|302831786|ref|XP_002947458.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
gi|300267322|gb|EFJ51506.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
Length = 140
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGK-VSQLEHVFI 65
+P+ LL A H V VELK+GE Y G + +C+ N L + T+KDG+ ++ +I
Sbjct: 2 LPLSLLKTAQRHAVLVELKNGETYNGYLQQCDTWMNLHLSEVICTSKDGQRFFKMPEAYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +P+
Sbjct: 62 RGNTIKYISVPE 73
>gi|336372413|gb|EGO00752.1| hypothetical protein SERLA73DRAFT_121184 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385171|gb|EGO26318.1| hypothetical protein SERLADRAFT_367910 [Serpula lacrymans var.
lacrymans S7.9]
Length = 115
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G +V C++ N L + T+ +G + +L +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLRECYI 61
Query: 66 RGSKVRFMVIPDMLKNA 82
RGS ++++ +PD L +A
Sbjct: 62 RGSTIKYLRVPDTLLDA 78
>gi|298715431|emb|CBJ28042.1| Sm-like protein LSm4 [Ectocarpus siliculosus]
Length = 165
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A G + VELK+G+ Y G + C+ N +L+++ +T++D K ++ V++
Sbjct: 2 LPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYV 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ IP+
Sbjct: 62 RGNSIKYVTIPE 73
>gi|357442545|ref|XP_003591550.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
gi|355480598|gb|AES61801.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
Length = 106
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
P+ LL A GH + VELK+GE Y G +V C+ N L + T+ DG + + +I
Sbjct: 2 FPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVFCTSNDGDRFWYMPKCYI 61
Query: 66 RGSKVRFMVIPDML 79
RG+ ++++ +P L
Sbjct: 62 RGNTIKYLRLPPSL 75
>gi|50543206|ref|XP_499769.1| YALI0A04961p [Yarrowia lipolytica]
gi|49645634|emb|CAG83694.1| YALI0A04961p [Yarrowia lipolytica CLIB122]
Length = 138
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V +ELK+G + G+++ +N N L+N+ T K+ + L+++ IRG+
Sbjct: 4 VRFLMKLTSESVQIELKNGTVLLGTVMSVSNNMNTTLKNVKMTMKNRPPTSLDYINIRGN 63
Query: 69 KVRFMVIPDML 79
+RF ++PD L
Sbjct: 64 TIRFFILPDSL 74
>gi|294916931|ref|XP_002778398.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239886770|gb|EER10193.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 81
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 42 NCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFK 86
N + + T KDGK + LE +IRGSK+R++V+PD L+ APMFK
Sbjct: 2 NLLIAEVVVTRKDGKQTSLEQAYIRGSKIRYIVVPDNLRYAPMFK 46
>gi|367022520|ref|XP_003660545.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
gi|347007812|gb|AEO55300.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
Length = 128
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V+C+ N L + T+ +G K +L V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|326470583|gb|EGD94592.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326484638|gb|EGE08648.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 121
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLTLKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 61 VRGNNIKYLRVPE 73
>gi|354548533|emb|CCE45270.1| hypothetical protein CPAR2_702830 [Candida parapsilosis]
Length = 161
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A + VELK+GE Y G++ C+ N L ++ T DG + +++ ++I
Sbjct: 2 LPLYLLTAAKNQPILVELKTGETYNGNLTNCDSWMNLTLHDVIQTNADGDEFAKIAEIYI 61
Query: 66 RGSKVRFMVIPDML 79
+G ++++ IPD +
Sbjct: 62 KGMHIKYLRIPDQI 75
>gi|320035592|gb|EFW17533.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392868800|gb|EAS34594.2| small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 125
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ + GH + VELK+GE G +V C+ N L+ + T+ +G + +L V++
Sbjct: 2 LPLGLLNASQGHPMLVELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++F+ +P+
Sbjct: 62 RGNNIKFLRVPE 73
>gi|83769760|dbj|BAE59895.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 133
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 14/96 (14%)
Query: 1 MSRSLGI-------PVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTA 52
MS +LGI P+ LL A GH + VELK+GE G + C DNW N L+ + T+
Sbjct: 1 MSCNLGINFFSGRLPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILKEVVQTS 59
Query: 53 KDG-KVSQLEHVFIRGSKVRFMVIP----DMLKNAP 83
+G + +L V+IRG+ ++++ IP +M+K P
Sbjct: 60 PEGDRFFRLPEVYIRGNNIKYLRIPEEIIEMVKEQP 95
>gi|46121885|ref|XP_385496.1| hypothetical protein FG05320.1 [Gibberella zeae PH-1]
Length = 154
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L+ + T+ +G + +L V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|303315215|ref|XP_003067615.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240107285|gb|EER25470.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 144
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ + GH + VELK+GE G +V C+ N L+ + T+ +G + +L V++
Sbjct: 21 LPLGLLNASQGHPMLVELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYV 80
Query: 66 RGSKVRFMVIPD 77
RG+ ++F+ +P+
Sbjct: 81 RGNNIKFLRVPE 92
>gi|449017546|dbj|BAM80948.1| Sm protein D3 [Cyanidioschyzon merolae strain 10D]
Length = 170
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
+ +P LL EA +V+VE K+G YRG + N L +T G+ +Q V
Sbjct: 8 AFDLPRALLREAKNQIVSVETKNGMEYRGRLDNVSSRMNLVLSAVTVLNATGERTQKNRV 67
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRL 88
+RG + +V+P+ L++AP L
Sbjct: 68 LVRGDSIVLVVLPEALEDAPQLDVL 92
>gi|302881905|ref|XP_003039863.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
gi|256720730|gb|EEU34150.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
Length = 125
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L + T+ +G K +L V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLREVVQTSPEGDKFVRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|224015193|ref|XP_002297255.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968091|gb|EED86446.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A+ + VELKSG Y G +V C+ N L ++ T+K+G K +L +I
Sbjct: 2 LPLSLLKSATTLPLLVELKSGTTYNGRLVNCDTYMNLNLRDVVCTSKEGDKFWKLNECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS V+++ +P+
Sbjct: 62 RGSSVKYLRLPE 73
>gi|224015187|ref|XP_002297252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968088|gb|EED86443.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A+ + VELKSG Y G +V C+ N L ++ T+K+G K +L +I
Sbjct: 2 LPLSLLKSATTLPLLVELKSGTTYNGRLVNCDTYMNLNLRDVVCTSKEGDKFWKLNECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS V+++ +P+
Sbjct: 62 RGSSVKYLRLPE 73
>gi|82913333|ref|XP_728601.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoelii yoelii]
Length = 130
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
P+ LL + V VELK+GE Y G +V C+ N ++NI T+KDG K ++ ++
Sbjct: 1 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 60
Query: 66 RGSKVRFMVIPDM-LKNA 82
RGS V+++ + D ++NA
Sbjct: 61 RGSSVKYIRVQDQAIENA 78
>gi|317147119|ref|XP_001821897.2| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 123
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L+ + T+ +G + +L V+
Sbjct: 4 LPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 62
Query: 65 IRGSKVRFMVIP----DMLKNAP 83
IRG+ ++++ IP +M+K P
Sbjct: 63 IRGNNIKYLRIPEEIIEMVKEQP 85
>gi|452819748|gb|EME26801.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Galdieria
sulphuraria]
Length = 110
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A G V VELKSG+ Y G +V + N L + +T+++G + ++ +++
Sbjct: 3 LPLSLLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYV 62
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGR 103
RG+ V+++ +P+ + + ++ KSSS R
Sbjct: 63 RGNTVKYLRVPEEIVDT--LTDQQSQTTDKSSSFPKNR 98
>gi|452819749|gb|EME26802.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Galdieria
sulphuraria]
Length = 127
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A G V VELKSG+ Y G +V + N L + +T+++G + ++ +++
Sbjct: 3 LPLSLLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYV 62
Query: 66 RGSKVRFMVIPD 77
RG+ V+++ +P+
Sbjct: 63 RGNTVKYLRVPE 74
>gi|317147121|ref|XP_003189888.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 121
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIP----DMLKNAP 83
IRG+ ++++ IP +M+K P
Sbjct: 61 IRGNNIKYLRIPEEIIEMVKEQP 83
>gi|401419814|ref|XP_003874396.1| putative small nuclear ribonucleaoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490632|emb|CBZ25894.1| putative small nuclear ribonucleaoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 141
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECE-DNWNCQLENITYTAKDGKVSQLEHVF 64
IP L+ EA VTVE G+LY+G++ + N +L ++ + AKD E V
Sbjct: 10 DIPSSLVFEALNSRVTVETVDGDLYKGTLAAFDVSRGNIELVDVRHQAKDSTYGFYERVT 69
Query: 65 IRGSKVRFMVIPDMLKNAPMFK 86
+RGSK+R +++P +K AP +
Sbjct: 70 VRGSKIRIVLLPPEMKAAPSLQ 91
>gi|340517649|gb|EGR47892.1| predicted protein [Trichoderma reesei QM6a]
Length = 152
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L+ + T+ +G K +L V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|320590330|gb|EFX02773.1| bar domain containing protein [Grosmannia clavigera kw1407]
Length = 1158
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V+C+ N L+ + T+ DG ++ V++
Sbjct: 366 LPLGLLSAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLKGVVQTSPDGDSFMRIPEVYV 425
Query: 66 RGSKVRFMVIPDMLKNA 82
+G+ ++++ +PD + +A
Sbjct: 426 KGNNIKYLRVPDEIIDA 442
>gi|340960256|gb|EGS21437.1| hypothetical protein CTHT_0032950 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 769
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V+C+ N L + T+ +G K +L V++
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|396476736|ref|XP_003840106.1| predicted protein [Leptosphaeria maculans JN3]
gi|312216677|emb|CBX96627.1| predicted protein [Leptosphaeria maculans JN3]
Length = 54
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 33/36 (91%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVE 36
M+ ++GIP+KLL+EA+GH+VT+E+ SGE+YRG ++E
Sbjct: 1 MTSTIGIPIKLLNEAAGHIVTLEITSGEVYRGKLIE 36
>gi|323452593|gb|EGB08466.1| hypothetical protein AURANDRAFT_25994 [Aureococcus
anophagefferens]
Length = 139
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A G + +ELK+G+ Y G +V + N LE + T++DG + +L+ +I
Sbjct: 2 LPLSLLTTAKGQPMLIELKNGDTYNGRLVSADTWMNVNLEEVICTSRDGDRFWKLKECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ IPD
Sbjct: 62 RGNSIKYLRIPD 73
>gi|145490317|ref|XP_001431159.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398262|emb|CAK63761.1| unnamed protein product [Paramecium tetraurelia]
Length = 75
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 51 TAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS 96
+DG+ LE V++RGS++RF+VIPD+ K APMFK++ A K K+
Sbjct: 2 VTRDGRPMSLEQVYLRGSQIRFVVIPDVFKYAPMFKKIRANAKSKN 47
>gi|392579756|gb|EIW72883.1| hypothetical protein TREMEDRAFT_24586, partial [Tremella
mesenterica DSM 1558]
Length = 104
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A G + VELK+G + G +VEC++ N L + T+ DG + +++ VFI
Sbjct: 1 LPLTLLNAAQGKPMLVELKNGVTFNGHLVECDNFMNVTLREVYQTSADGERFWKMKEVFI 60
Query: 66 RGSKVRFMVIPDMLKNAPMFK----RLDARIKGKSS 97
+G+ +++ I D + ++ + R A+ +G+S+
Sbjct: 61 KGNIIKYFRIADAILDSAFEQQEKNRAAAKTRGQSA 96
>gi|448536329|ref|XP_003871097.1| hypothetical protein CORT_0G02940 [Candida orthopsilosis Co
90-125]
gi|380355453|emb|CCG24972.1| hypothetical protein CORT_0G02940 [Candida orthopsilosis]
Length = 155
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A + VELK+GE Y G++ C+ N L + T DG + ++L ++I
Sbjct: 2 LPLYLLTAAKNQPILVELKTGETYNGNLTNCDSWMNLTLHEVIQTNADGDEFAKLPEIYI 61
Query: 66 RGSKVRFMVIPDML 79
+G ++++ IPD +
Sbjct: 62 KGMHIKYLRIPDQI 75
>gi|212537193|ref|XP_002148752.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
gi|210068494|gb|EEA22585.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
Length = 170
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L+ + T +G + +L V+
Sbjct: 54 LPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLTLKEVVQTTPEGDRFFRLPEVY 112
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 113 VRGNNIKYLRVPE 125
>gi|358382645|gb|EHK20316.1| hypothetical protein TRIVIDRAFT_68894 [Trichoderma virens Gv29-8]
Length = 129
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L+ + T+ +G K +L V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|336270436|ref|XP_003349977.1| hypothetical protein SMAC_00869 [Sordaria macrospora k-hell]
gi|380095367|emb|CCC06840.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 130
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ +L A GH + VELK+GE G +++C+ N L + T+ +G K ++L V++
Sbjct: 2 LPLGILTAAQGHPMLVELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFARLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|443922752|gb|ELU42142.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 137
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL+ A + VELK+GE + G +V C+ N L + T+ +G + +L+ +
Sbjct: 11 SLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDTFMNITLREVYQTSPEGDRFWKLKECY 70
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDAR 91
IRGS ++++ +PD L + ++L AR
Sbjct: 71 IRGSMIKYLRVPDALLDNVKEEQLRAR 97
>gi|68064470|ref|XP_674219.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4 [Plasmodium berghei strain ANKA]
gi|56492635|emb|CAH99966.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4, putative [Plasmodium berghei]
Length = 130
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
P+ LL + V VELK+GE Y G +V C+ N ++NI T+KDG K ++ ++
Sbjct: 1 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 60
Query: 66 RGSKVRFMVIPDM-LKNA 82
RGS V+++ + D ++NA
Sbjct: 61 RGSSVKYIRVQDQAIENA 78
>gi|346325131|gb|EGX94728.1| U6 snRNA-associated Sm-like protein LSM4, putative [Cordyceps
militaris CM01]
Length = 163
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEH 62
SL +P+ LL+ A GH + VELK+GE G +V C+ N L + T+ +G K +L+
Sbjct: 34 SLQLPLGLLNAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLTQVVQTSPEGDKFMRLKE 93
Query: 63 VFIRGSKVRFMVIPD 77
V+++G+ ++++ + +
Sbjct: 94 VYVKGNNIKYLRVAE 108
>gi|393239356|gb|EJD46888.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 136
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G +V C++ N L + T+ +G + +L+ +I
Sbjct: 2 LPLSLLNAAQSKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRFWKLKECYI 61
Query: 66 RGSKVRFMVIPDML 79
RGS ++++ +PD L
Sbjct: 62 RGSTIKYLRVPDQL 75
>gi|402079351|gb|EJT74616.1| glycine rich protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 141
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N ++ + T+ +G K +L +++
Sbjct: 2 LPLGLLNAAQGHAMMVELKNGETLNGHLVMCDTWMNLTMKEVVQTSPEGDKFMRLPEIYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|449300793|gb|EMC96805.1| hypothetical protein BAUCODRAFT_122769 [Baudoinia compniacensis
UAMH 10762]
Length = 125
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V C+ N L+ + T+ +G K +L ++
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDTYMNLTLKEVVQTSPEGDKFFRLPECYV 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNNIKYLRVPD 73
>gi|302814278|ref|XP_002988823.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
gi|300143394|gb|EFJ10085.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
Length = 180
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAK---DG-KVSQLEH 62
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+K DG + ++
Sbjct: 2 LPLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPE 61
Query: 63 VFIRGSKVRFMVIPD 77
+IRG+ ++++ +PD
Sbjct: 62 CYIRGNTIKYLRVPD 76
>gi|328862497|gb|EGG11598.1| hypothetical protein MELLADRAFT_31042 [Melampsora larici-populina
98AG31]
Length = 108
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LLH A G + VELK+GE + G +++ ++ N + + T+ DG K +L +I
Sbjct: 1 LPLALLHGAQGKPMLVELKNGETFNGHLIQSDNFMNLTMREVYLTSSDGEKFWKLSECYI 60
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
RG+ ++++ + D + + + R + +S+ G G G
Sbjct: 61 RGNTIKYIRVTDNVIDIVKQQEDSYRQQNRSARGGAGNG 99
>gi|242809941|ref|XP_002485479.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716104|gb|EED15526.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 118
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L+ + T +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLTLKEVVQTTPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 61 VRGNNIKYLRVPE 73
>gi|225563373|gb|EEH11652.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus G186AR]
Length = 124
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 61 VRGNNIKYLRVPE 73
>gi|154281997|ref|XP_001541811.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
gi|150411990|gb|EDN07378.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
Length = 124
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 61 VRGNNIKYLRVPE 73
>gi|240275971|gb|EER39484.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325093332|gb|EGC46642.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H88]
Length = 124
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLAAAQGHPMLVELKNGETLNGHLVNC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 61 VRGNNIKYLRVPE 73
>gi|402216859|gb|EJT96942.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 132
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE G +V C++ N L + T+ +G + +L+ ++
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETLNGHLVNCDNFMNITLREVYQTSPEGDRFWKLKECYV 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDAR 91
RGS ++++ +PD L + ++ AR
Sbjct: 62 RGSTIKYLRVPDQLLDEVQLEQFHAR 87
>gi|380477058|emb|CCF44358.1| small nuclear ribonucleoprotein [Colletotrichum higginsianum]
Length = 170
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L+ + T+ +G K ++ V++
Sbjct: 41 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYV 100
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 101 KGNNIKYLRVPD 112
>gi|348513171|ref|XP_003444116.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Oreochromis niloticus]
gi|432883312|ref|XP_004074261.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Oryzias
latipes]
Length = 119
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + +QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ +IK K
Sbjct: 64 NIRYFILPDSLPLDTLLVDIEPKIKSK 90
>gi|295674033|ref|XP_002797562.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280212|gb|EEH35778.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 124
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L+ + T +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLILKEVVQTTPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 61 VRGNNIKYLRVPE 73
>gi|302762304|ref|XP_002964574.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
gi|300168303|gb|EFJ34907.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
Length = 90
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAK---DG-KVSQLEH 62
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+K DG + ++
Sbjct: 2 LPLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPE 61
Query: 63 VFIRGSKVRFMVIPD 77
+IRG+ ++++ +PD
Sbjct: 62 CYIRGNTIKYLRVPD 76
>gi|358394136|gb|EHK43537.1| hypothetical protein TRIATDRAFT_266952 [Trichoderma atroviride
IMI 206040]
Length = 130
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L+ + T+ +G K +L V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|225684632|gb|EEH22916.1| U6 snRNP-associated protein Lsm4 [Paracoccidioides brasiliensis
Pb03]
gi|226286829|gb|EEH42342.1| small nuclear ribonucleoprotein [Paracoccidioides brasiliensis
Pb18]
Length = 124
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L+ + T +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLILKEVVQTTPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 61 VRGNNIKYLRVPE 73
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILKEVVQTSPEGDRFFKLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
IRG+ ++++ IP+
Sbjct: 61 IRGNNIKYLRIPE 73
>gi|238496529|ref|XP_002379500.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|220694380|gb|EED50724.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|391868822|gb|EIT78031.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 121
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
IRG+ ++++ IP+
Sbjct: 61 IRGNNIKYLRIPE 73
>gi|146411987|ref|XP_001481965.1| hypothetical protein PGUG_05728 [Meyerozyma guilliermondii ATCC
6260]
gi|146393472|gb|EDK41630.1| hypothetical protein PGUG_05728 [Meyerozyma guilliermondii ATCC
6260]
Length = 121
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 12 LHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVR 71
+ ++G +TVELK+G G+++ C + N L+NI L+ + IRG+++R
Sbjct: 10 MPSSTGQPITVELKNGTSVSGTLLSCTPSMNLSLKNIKLVQPHQDPQLLQFMNIRGNQIR 69
Query: 72 FMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRA-KAAAAGR 118
+++PD L + + +IKG+ + G A R KAA GR
Sbjct: 70 QIILPDDLNIESVLSKSQVKIKGQGAGPGNKDIEAEPRRPFKAATRGR 117
>gi|340718601|ref|XP_003397753.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like isoform
2 [Bombus terrestris]
Length = 148
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
+P+ LL A H + VELK+GE Y G +V C D+W NI K ++ +IR
Sbjct: 17 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DSW----MNINLREDGDKFWRMPECYIR 71
Query: 67 GSKVRFMVIPD 77
GS ++++ IPD
Sbjct: 72 GSTIKYLRIPD 82
>gi|146103398|ref|XP_001469552.1| putative small nuclear ribonucleaoprotein [Leishmania infantum
JPCM5]
gi|134073922|emb|CAM72661.1| putative small nuclear ribonucleaoprotein [Leishmania infantum
JPCM5]
Length = 141
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECE-DNWNCQLENITYTAKDGKVSQLEHVF 64
IP L+ EA VTVE G+LY+G++ + N +L ++ + AKD E V
Sbjct: 10 DIPSSLVFEALHSRVTVETVEGDLYKGTLAAFDVSRGNIELVDVRHHAKDSSFGFYERVT 69
Query: 65 IRGSKVRFMVIPDMLKNAPMFK 86
+RGSK+R +++P +K AP +
Sbjct: 70 VRGSKIRIILLPSEMKAAPSLQ 91
>gi|410910972|ref|XP_003968964.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Takifugu
rubripes]
Length = 119
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + +QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTPKNREPTQLESLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDIEPKVKSK 90
>gi|440638708|gb|ELR08627.1| hypothetical protein GMDG_03318 [Geomyces destructans 20631-21]
Length = 124
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V C+ N L+ + T+ +G K +L V++
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDKFFRLAEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|345560998|gb|EGX44114.1| hypothetical protein AOL_s00210g95 [Arthrobotrys oligospora ATCC
24927]
Length = 145
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKV-SQLEHVFI 65
+P+ LL GH + VELK+GE G +V C+ N L+ + T+ DG+ +L ++
Sbjct: 2 LPLTLLTTVQGHPLLVELKNGETLNGHLVSCDTWMNLTLKEVIQTSPDGETFHRLPEAYV 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNNIKYLRVPD 73
>gi|116196218|ref|XP_001223921.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
gi|88180620|gb|EAQ88088.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
Length = 127
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L + T+ +G K +L V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDKFVRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|342870013|gb|EGU73372.1| hypothetical protein FOXB_16133 [Fusarium oxysporum Fo5176]
Length = 127
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L+ + T+ +G + +L V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|50759758|ref|XP_417768.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Gallus gallus]
Length = 123
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
SL I ++ LH GHV TV+L+ G + + N +L +T+T + G+VSQL+ +
Sbjct: 16 SLVILLQGLH---GHVTTVDLRDESTATGRVANVDAFMNMRLAEVTFTDRRGEVSQLDEI 72
Query: 64 FIRGSKVRFMVIPD 77
F+ G VR++ IPD
Sbjct: 73 FVTGRNVRYVHIPD 86
>gi|336470904|gb|EGO59065.1| hypothetical protein NEUTE1DRAFT_116371 [Neurospora tetrasperma
FGSC 2508]
gi|350291974|gb|EGZ73169.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 130
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ +L A GH + VELK+GE G +++C+ N L + T+ +G K +L V++
Sbjct: 2 LPLGILTAAQGHPMLVELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLREVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|425765914|gb|EKV04555.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum PHI26]
gi|425779249|gb|EKV17325.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum Pd1]
Length = 121
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V C++ N L + T+ +G + +L V+I
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +P+
Sbjct: 62 RGNNIKYLRVPE 73
>gi|398024024|ref|XP_003865173.1| small nuclear ribonucleaoprotein, putative [Leishmania donovani]
gi|322503410|emb|CBZ38495.1| small nuclear ribonucleaoprotein, putative [Leishmania donovani]
Length = 141
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECE-DNWNCQLENITYTAKDGKVSQLEHVF 64
IP L+ EA VTVE G+LY+G++ + N +L ++ + AKD E V
Sbjct: 10 DIPSSLVFEALHSRVTVETVEGDLYKGTLAAFDVSRGNIELVDVRHHAKDSSFGFYERVT 69
Query: 65 IRGSKVRFMVIPDMLKNAPMFK 86
+RGSK+R +++P +K AP +
Sbjct: 70 VRGSKIRIILLPPEMKAAPSLQ 91
>gi|255946281|ref|XP_002563908.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588643|emb|CAP86759.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 121
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V C++ N L + T+ +G + +L V+I
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVTCDNFMNLILREVVQTSPEGDRFFRLPEVYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +P+
Sbjct: 62 RGNNIKYLRVPE 73
>gi|27545253|ref|NP_775359.1| small nuclear ribonucleoprotein Sm D1 [Danio rerio]
gi|21105451|gb|AAM34669.1|AF506225_1 small nuclear ribonucleoprotein D1 [Danio rerio]
gi|47938075|gb|AAH71543.1| Snrpd1 protein [Danio rerio]
Length = 119
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + +QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDIEPKVKSK 90
>gi|408393268|gb|EKJ72533.1| hypothetical protein FPSE_07170 [Fusarium pseudograminearum
CS3096]
Length = 139
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L+ + T+ +G + +L V++
Sbjct: 17 LPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYV 76
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 77 KGNNIKYLRVPD 88
>gi|159476634|ref|XP_001696416.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
gi|158282641|gb|EDP08393.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
Length = 134
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H V VELK+GE Y G + C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQRHGVLVELKNGETYNGYLQHCDTWMNLHLSEVICTSKDGQRFFKMPEAYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +P+
Sbjct: 62 RGNTIKYISVPE 73
>gi|399218474|emb|CCF75361.1| unnamed protein product [Babesia microti strain RI]
Length = 122
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G + C+ N + N+ T+++G K ++ F+
Sbjct: 3 LPLTLLRTAQGHPMLVELKNGETCSGILTTCDGFMNLHMRNVVRTSREGDKFWKINECFV 62
Query: 66 RGSKVRFMVIPDMLKN 81
RG+ ++ + +PD + N
Sbjct: 63 RGNNLKSVRLPDQVAN 78
>gi|85107173|ref|XP_962325.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
gi|28923928|gb|EAA33089.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
Length = 130
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ +L A GH + VELK+GE G +++C+ N L + T+ +G K +L V++
Sbjct: 2 LPLGILTAAQGHPMLVELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|348519431|ref|XP_003447234.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 1
[Oreochromis niloticus]
gi|348519433|ref|XP_003447235.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 2
[Oreochromis niloticus]
Length = 140
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TV+L++ RG +V + N +LE++ Y + G+++QL+ +FI G
Sbjct: 36 VILLQGLQGEVTTVDLRNESTARGRVVNVDAFMNIRLEDVLYRDRRGQLTQLQDLFITGR 95
Query: 69 KVRFMVIPDML 79
+R++ IPD +
Sbjct: 96 NIRYVHIPDHM 106
>gi|260943870|ref|XP_002616233.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC 42720]
gi|238849882|gb|EEQ39346.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC 42720]
Length = 115
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 12 LHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVR 71
L A+ VTVELK+G G ++ C + N ++NI ++ + IRG+++R
Sbjct: 10 LPSATNQPVTVELKNGNSVNGQILSCSPSMNLSMKNIKLIQPHQDPQLMQFMNIRGNQIR 69
Query: 72 FMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAK 112
+++PD L + R ++KG G G G+ V+ R K
Sbjct: 70 QILLPDDLNIESLLSRSTVKMKGS----GAGPGKVVSERKK 106
>gi|310795553|gb|EFQ31014.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 128
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L+ + T+ +G K ++ V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|393222663|gb|EJD08147.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 130
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+GE + G +V C++ N L + T+ D + +L +I
Sbjct: 2 LPLTLLNAAQNRPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADADRFWKLTECYI 61
Query: 66 RGSKVRFMVIPDML 79
RGS ++++ +PD L
Sbjct: 62 RGSTIKYLRVPDKL 75
>gi|432105433|gb|ELK31648.1| Small nuclear ribonucleoprotein Sm D1 [Myotis davidii]
Length = 221
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 106 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 165
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 166 NIRYFILPDSLPLDTLLVDVEPKVKSK 192
>gi|428673180|gb|EKX74093.1| small ribonucleoprotein D1, putative [Babesia equi]
Length = 119
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G+++ + + N L+N+ KD V L+H+ +RG+
Sbjct: 4 VRFLMKLANESVTLELKNGTVMTGTIIGIDISMNTHLKNVKIVKKDNSVILLDHLTVRGN 63
Query: 69 KVRFMVIPD 77
+R+ ++PD
Sbjct: 64 SIRYYLLPD 72
>gi|402902787|ref|XP_003914277.1| PREDICTED: uncharacterized protein LOC101001281 [Papio anubis]
Length = 266
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 112 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 171
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 172 NIRYFILPDSLPLDTLLVDVEPKVKSK 198
>gi|119481265|ref|XP_001260661.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|146322938|ref|XP_755534.2| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus fumigatus
Af293]
gi|119408815|gb|EAW18764.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|129558535|gb|EAL93496.2| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus Af293]
Length = 119
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ IP+
Sbjct: 61 VRGNNIKYLRIPE 73
>gi|327349106|gb|EGE77963.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 167
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEH 62
+ +P+ LL A GH + VELK+GE G +V C DNW N L + T+ +G + +L
Sbjct: 43 IQLPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLILREVVQTSPEGDRFFRLPE 101
Query: 63 VFIRGSKVRFMVIPD 77
+++RG+ ++++ +P+
Sbjct: 102 MYVRGNNIKYLRVPE 116
>gi|145232181|ref|XP_001399544.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus niger CBS
513.88]
gi|134056455|emb|CAL00622.1| unnamed protein product [Aspergillus niger]
Length = 121
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ IP+
Sbjct: 61 VRGNNIKYLRIPE 73
>gi|221055864|ref|XP_002259070.1| U6 snRNA associated Sm-like protein Ls [Plasmodium knowlesi
strain H]
gi|193809141|emb|CAQ39843.1| U6 snRNA associated Sm-like protein Ls,putative [Plasmodium
knowlesi strain H]
Length = 126
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
P+ LL + V VELK+GE Y G +V C+ N ++NI T+KDG K ++ ++
Sbjct: 3 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 62
Query: 66 RGSKVRFMVIPD 77
RG+ V+++ + D
Sbjct: 63 RGNSVKYIRVQD 74
>gi|255722764|ref|XP_002546316.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240130833|gb|EER30395.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 129
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 12 LHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVR 71
+ ++ VTVELK+G + G+M+ C + N L+N+ L+ + IRG++VR
Sbjct: 10 IPNSTNQPVTVELKNGNVISGTMLSCNPSMNLNLKNVKLQQPLQDPILLDFINIRGNQVR 69
Query: 72 FMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+++PD L + + + +IKG+ + G
Sbjct: 70 QIILPDELNIESVLSKSETKIKGQGAGPG 98
>gi|261195536|ref|XP_002624172.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239588044|gb|EEQ70687.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239610465|gb|EEQ87452.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 124
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G +V C DNW N L + T+ +G + +L ++
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNC-DNWMNLILREVVQTSPEGDRFFRLPEMY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ +P+
Sbjct: 61 VRGNNIKYLRVPE 73
>gi|358365662|dbj|GAA82284.1| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus kawachii
IFO 4308]
Length = 121
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLASC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ IP+
Sbjct: 61 VRGNNIKYLRIPE 73
>gi|350634474|gb|EHA22836.1| hypothetical protein ASPNIDRAFT_127789 [Aspergillus niger ATCC
1015]
Length = 118
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L+ + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILKEVVQTSPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
+RG+ ++++ IP+
Sbjct: 61 VRGNNIKYLRIPE 73
>gi|67540086|ref|XP_663817.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
gi|40738809|gb|EAA57999.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
Length = 775
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEH 62
L +P+ LL A GH + VELK+GE G + C DNW N L + T+ +G + +L
Sbjct: 10 LCLPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILREVVQTSPEGDRFFKLPE 68
Query: 63 VFIRGSKVRFMVIP----DMLK 80
V++RG+ ++++ IP DM+K
Sbjct: 69 VYVRGNNIKYLRIPEEIIDMVK 90
>gi|453086958|gb|EMF14999.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 138
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGK-VSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V C+ N L+ + T+ +G +L ++
Sbjct: 2 LPLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNITLKEVVQTSPEGDHFFRLAECYV 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNNIKYLRVPD 73
>gi|195384890|ref|XP_002051145.1| GJ13818 [Drosophila virilis]
gi|194147602|gb|EDW63300.1| GJ13818 [Drosophila virilis]
Length = 140
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE Y G +V C+ N L ++ T+KDG + ++ FIRGS ++++ IPD
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECFIRGSTIKYLRIPD 59
>gi|297602887|ref|NP_001053049.2| Os04g0470200 [Oryza sativa Japonica Group]
gi|38344744|emb|CAE03048.2| OSJNBa0089K21.2 [Oryza sativa Japonica Group]
gi|116310018|emb|CAH67043.1| OSIGBa0124N08.5 [Oryza sativa Indica Group]
gi|222629031|gb|EEE61163.1| hypothetical protein OsJ_15131 [Oryza sativa Japonica Group]
gi|255675540|dbj|BAF14963.2| Os04g0470200 [Oryza sativa Japonica Group]
Length = 114
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKAKKPTAG 95
>gi|259479587|tpe|CBF69945.1| TPA: U6 snRNA-associated Sm-like protein LSM4, putative
(AFU_orthologue; AFUA_2G12020) [Aspergillus nidulans
FGSC A4]
Length = 119
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L + T+ +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILREVVQTSPEGDRFFKLPEVY 60
Query: 65 IRGSKVRFMVIP----DMLK 80
+RG+ ++++ IP DM+K
Sbjct: 61 VRGNNIKYLRIPEEIIDMVK 80
>gi|326933035|ref|XP_003212615.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Meleagris gallopavo]
Length = 123
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL GHV TV+L+ G + + N +L +T+T + G VSQL+ +F+ G
Sbjct: 18 VILLQGLHGHVTTVDLRDESTATGRVANVDAFMNMRLAQVTFTDRRGVVSQLDEIFVAGR 77
Query: 69 KVRFMVIPDML 79
VR++ IPD +
Sbjct: 78 NVRYVHIPDQV 88
>gi|403174347|ref|XP_003333333.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170935|gb|EFP88914.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 248
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LLH A G + VELK+GE + G +++C++ N + + T+ +G + +L +I
Sbjct: 101 LPLALLHGAQGKPMLVELKNGETFNGHLIQCDNFMNLTMREVYQTSANGEQFWKLPECYI 160
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ + D
Sbjct: 161 RGNTIKYIRVTD 172
>gi|367045678|ref|XP_003653219.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
gi|347000481|gb|AEO66883.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL
8126]
Length = 127
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A GH + VELK+GE G +V C+ N L + T+ +G + +L V++
Sbjct: 2 LPLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQTSPEGDRFMRLPEVYV 61
Query: 66 RGSKVRFMVIPD 77
+G+ ++++ +PD
Sbjct: 62 KGNNIKYLRVPD 73
>gi|326498561|dbj|BAJ98708.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 181
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTMKGKNPVTLDHISVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGR 105
+R+ ++PD L + R+K K + G GR
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKSKKPTTGKPMGR 100
>gi|226507836|ref|NP_001151154.1| LOC100284787 [Zea mays]
gi|195644674|gb|ACG41805.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 116
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTTG 95
>gi|226496545|ref|NP_001148353.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|195618318|gb|ACG30989.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|414586802|tpg|DAA37373.1| TPA: small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 115
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTTG 95
>gi|169617530|ref|XP_001802179.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
gi|111059239|gb|EAT80359.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
Length = 137
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VTVELK+G + G++ N L + YT K L+ + +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGSIVNGTITSVSPLMNVALRTVKYTPKSRDTVTLDSMTVRGS 63
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 64 TIRYIILPDSL 74
>gi|326511932|dbj|BAJ95947.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 114
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G G+++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTIIGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
>gi|291394184|ref|XP_002713641.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like [Oryctolagus cuniculus]
Length = 236
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 121 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 180
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 181 NIRYFILPDSLPLDTLLVDVEPKVKSK 207
>gi|52345462|ref|NP_001004780.1| small nuclear ribonucleoprotein Sm D1 [Xenopus (Silurana)
tropicalis]
gi|148227202|ref|NP_001085322.1| small nuclear ribonucleoprotein Sm D1 [Xenopus laevis]
gi|49250837|gb|AAH74514.1| MGC69276 protein [Xenopus (Silurana) tropicalis]
gi|49255946|gb|AAH71069.1| MGC78968 protein [Xenopus laevis]
gi|76779906|gb|AAI06262.1| MGC78968 protein [Xenopus laevis]
gi|118835457|gb|AAI28954.1| MGC78968 protein [Xenopus laevis]
Length = 119
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VTVELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>gi|290988841|ref|XP_002677099.1| predicted protein [Naegleria gruberi]
gi|284090705|gb|EFC44355.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + SG VT+ELK+G + G++V + + N L+ + T K LEH+ +RGS
Sbjct: 1 RFLMKLSGESVTIELKNGTVIAGTIVGVDMSMNTHLKAVKMTLKGKNPLPLEHMSVRGSN 60
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVG 102
+R++++P+ + + + K K + G G
Sbjct: 61 IRYVILPETINLDNLLQDTTVHPKPKKKTAGQG 93
>gi|354545656|emb|CCE42383.1| hypothetical protein CPAR2_200260 [Candida parapsilosis]
Length = 118
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%)
Query: 14 EASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFM 73
++ VTVELK+G + G+++ C + N L+N+ K L+++ +RG+++R +
Sbjct: 12 NSTNQPVTVELKNGNIINGTLLSCTPSMNLNLKNVKLQQKYQDPILLQYINVRGNQIRQI 71
Query: 74 VIPDMLKNAPMFKRLDARIKGK 95
++P+ L + ++ RIKG+
Sbjct: 72 LLPEDLNIDSVLEKSQTRIKGQ 93
>gi|361128454|gb|EHL00389.1| putative Small nuclear ribonucleoprotein Sm D3 [Glarea lozoyensis
74030]
Length = 266
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 12/60 (20%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQL 60
M+ ++GIP+KLL+EA ++YRG ++E EDN N QL++IT TA+DG+ +++
Sbjct: 1 MTSTIGIPIKLLNEA------------QVYRGKLLEAEDNMNVQLKDITVTARDGRQTKV 48
>gi|68473251|ref|XP_719431.1| hypothetical protein CaO19.7673 [Candida albicans SC5314]
gi|46441248|gb|EAL00547.1| hypothetical protein CaO19.7673 [Candida albicans SC5314]
gi|238880442|gb|EEQ44080.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 116
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 14 EASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFM 73
++ +TVELK+G + G+++ C + N L+N+ L+++ IRG++VR +
Sbjct: 12 NSTNQPITVELKNGNIISGTLLSCNPSMNLHLKNVRLQQPLQDPILLQYINIRGNQVRQI 71
Query: 74 VIPDMLKNAPMFKRLDARIKGKSSSIGVGRG-RAVA 108
++PD L + + + +IKG G G G +AVA
Sbjct: 72 LLPDELNIESVLAKSETKIKGS----GAGPGAKAVA 103
>gi|121715750|ref|XP_001275484.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
gi|119403641|gb|EAW14058.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
Length = 119
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A GH + VELK+GE G + C DNW N L+ + + +G + +L V+
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANC-DNWMNLILKEVVQASPEGDRFFRLPEVY 60
Query: 65 IRGSKVRFMVIPD 77
IRG+ ++++ IP+
Sbjct: 61 IRGNNIKYLRIPE 73
>gi|393212701|gb|EJC98200.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 119
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + N L+ + T ++ L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTMRNRDPQSLDTLSIRGN 63
Query: 69 KVRFMVIPD-------MLKNAPMFKRLDARIKGKSSSIGVGRGRAVA 108
+R+ V+PD ++ +AP K + K G GRGRAV
Sbjct: 64 NIRYFVLPDALPLDTLLVDDAPKPKN-----RKKEEVRGRGRGRAVV 105
>gi|125540070|gb|EAY86465.1| hypothetical protein OsI_07847 [Oryza sativa Indica Group]
Length = 114
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKAKKPTAG 95
>gi|72005990|ref|XP_785584.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Strongylocentrotus purpuratus]
Length = 132
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+++ T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKSVKLTPKNRETQQLESLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|332225775|ref|XP_003262059.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Nomascus
leucogenys]
Length = 119
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G+++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTILGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>gi|156098332|ref|XP_001615198.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium vivax Sal-1]
gi|148804072|gb|EDL45471.1| U6 snRNA associated Sm-like protein Lsm4, putative [Plasmodium
vivax]
Length = 127
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
P+ LL + V VELK+GE Y G +V C+ N ++NI T+KDG K ++ ++
Sbjct: 3 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 62
Query: 66 RGSKVRFMVIPD 77
RG+ V+++ + D
Sbjct: 63 RGNSVKYIRVQD 74
>gi|389583620|dbj|GAB66354.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium cynomolgi
strain B]
Length = 153
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
P+ LL + V VELK+GE Y G +V C+ N ++NI T+KDG K ++ ++
Sbjct: 30 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 89
Query: 66 RGSKVRFMVIPD 77
RG+ V+++ + D
Sbjct: 90 RGNSVKYIRVQD 101
>gi|355721054|gb|AES07137.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Mustela
putorius furo]
Length = 139
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 24 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 83
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 84 NIRYFILPDSLPLDTLLVDVEPKVKSK 110
>gi|242065592|ref|XP_002454085.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|195604664|gb|ACG24162.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|238011798|gb|ACR36934.1| unknown [Zea mays]
gi|241933916|gb|EES07061.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|413922841|gb|AFW62773.1| Small nuclear ribonucleoprotein Sm D1 isoform 1 [Zea mays]
gi|413922842|gb|AFW62774.1| Small nuclear ribonucleoprotein Sm D1 isoform 2 [Zea mays]
Length = 114
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTSG 95
>gi|156030963|ref|XP_001584807.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980]
gi|154700653|gb|EDO00392.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 136
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K+G L+ + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGASLSLDTINLRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|195473653|ref|XP_002089107.1| GE25987 [Drosophila yakuba]
gi|194175208|gb|EDW88819.1| GE25987 [Drosophila yakuba]
Length = 140
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE Y G +V C+ N L ++ T+KDG + ++ +IRGS ++++ IPD
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPD 59
>gi|195339803|ref|XP_002036506.1| GM11687 [Drosophila sechellia]
gi|194130386|gb|EDW52429.1| GM11687 [Drosophila sechellia]
Length = 140
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE Y G +V C+ N L ++ T+KDG + ++ +IRGS ++++ IPD
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPD 59
>gi|148691046|gb|EDL22993.1| mCG14669, isoform CRA_b [Mus musculus]
Length = 134
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 19 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 78
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 79 NIRYFILPDSLPLDTLLVDVEPKVKSK 105
>gi|389747560|gb|EIM88738.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 123
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + N L+ + TA++ S L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDPSSLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ V+PD L
Sbjct: 64 NIRYFVLPDSL 74
>gi|344241344|gb|EGV97447.1| U6 snRNA-associated Sm-like protein LSm4 [Cricetulus griseus]
Length = 124
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 22 VELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDML 79
VELK+GE Y G +V C DNW N L + T++DG K ++ +IRGS ++++ IPD +
Sbjct: 3 VELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI 61
>gi|194761808|ref|XP_001963115.1| GF14101 [Drosophila ananassae]
gi|190616812|gb|EDV32336.1| GF14101 [Drosophila ananassae]
Length = 140
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDMLK 80
VELK+GE Y G +V C+ N L ++ T+KDG + ++ +IRGS ++++ IPD +
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDEV- 61
Query: 81 NAPMFKRLDARIKGKS-SSIGVGRGRAVAMRAKAAAAGRGAAPG 123
M K DA+ K ++ + + RG ++ RG PG
Sbjct: 62 -IDMVKE-DAQAKSRNRTEMNKNRG------GNSSQNQRGGRPG 97
>gi|258597219|ref|XP_001347757.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
gi|254832602|gb|AAN35670.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
P+ LL + V VELK+GE Y G +V C+ N ++NI T+KDG K ++ ++
Sbjct: 3 FPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYV 62
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ + D
Sbjct: 63 RGNSIKYIRVQD 74
>gi|355477275|ref|NP_001239058.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Homo sapiens]
gi|395750752|ref|XP_003779150.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pongo abelii]
gi|397493883|ref|XP_003817825.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pan paniscus]
gi|402904784|ref|XP_003915220.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Papio anubis]
gi|426387788|ref|XP_004060344.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Gorilla gorilla gorilla]
gi|431922013|gb|ELK19186.1| U6 snRNA-associated Sm-like protein LSm4 [Pteropus alecto]
Length = 125
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 22 VELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE Y G +V C DNW N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 3 VELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPD 59
>gi|5902102|ref|NP_008869.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
gi|6678055|ref|NP_033252.1| small nuclear ribonucleoprotein Sm D1 [Mus musculus]
gi|78050059|ref|NP_001030237.1| small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|157818069|ref|NP_001099633.1| small nuclear ribonucleoprotein Sm D1 [Rattus norvegicus]
gi|350535747|ref|NP_001232444.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|386780612|ref|NP_001247758.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|57089749|ref|XP_537302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Canis lupus
familiaris]
gi|114672526|ref|XP_512054.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan
troglodytes]
gi|126321779|ref|XP_001363297.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Monodelphis domestica]
gi|296222369|ref|XP_002757161.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Callithrix
jacchus]
gi|297702359|ref|XP_002828147.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pongo abelii]
gi|301785950|ref|XP_002928390.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Ailuropoda
melanoleuca]
gi|311259030|ref|XP_003127902.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Sus
scrofa]
gi|327282141|ref|XP_003225802.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Anolis
carolinensis]
gi|348576770|ref|XP_003474159.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cavia
porcellus]
gi|354481732|ref|XP_003503055.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cricetulus
griseus]
gi|395511627|ref|XP_003760058.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Sarcophilus
harrisii]
gi|395823105|ref|XP_003784837.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Otolemur
garnettii]
gi|397489347|ref|XP_003815691.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan paniscus]
gi|403265201|ref|XP_003924835.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 1
[Saimiri boliviensis boliviensis]
gi|403265203|ref|XP_003924836.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 2
[Saimiri boliviensis boliviensis]
gi|410977436|ref|XP_003995111.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Felis catus]
gi|426253705|ref|XP_004020533.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Ovis aries]
gi|51338665|sp|P62314.1|SMD1_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|60413325|sp|P62315.1|SMD1_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|75076018|sp|Q4R5F6.1|SMD1_MACFA RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|109894869|sp|Q3ZC10.1|SMD1_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|6980598|pdb|1B34|A Chain A, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734042|pdb|3CW1|B Chain B, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734051|pdb|3CW1|M Chain M, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734060|pdb|3CW1|N Chain N, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734069|pdb|3CW1|O Chain O, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583602|pdb|3PGW|X Chain X, Crystal Structure Of Human U1 Snrnp
gi|315583611|pdb|3PGW|U Chain U, Crystal Structure Of Human U1 Snrnp
gi|332639434|pdb|2Y9A|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639441|pdb|2Y9A|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639448|pdb|2Y9A|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639458|pdb|2Y9B|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639465|pdb|2Y9B|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639472|pdb|2Y9B|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639482|pdb|2Y9C|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639489|pdb|2Y9C|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639496|pdb|2Y9C|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639506|pdb|2Y9D|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639513|pdb|2Y9D|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639520|pdb|2Y9D|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781210|pdb|3S6N|A Chain A, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302196|pdb|4F7U|A Chain A, Macromolecular Machine 6
gi|444302198|pdb|4F7U|C Chain C, Macromolecular Machine 6
gi|453055422|pdb|1VU2|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055430|pdb|1VU2|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055438|pdb|1VU2|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055446|pdb|1VU2|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055454|pdb|1VU2|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055462|pdb|1VU2|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453055474|pdb|1VU2|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|453055478|pdb|1VU3|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055486|pdb|1VU3|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055494|pdb|1VU3|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055502|pdb|1VU3|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055510|pdb|1VU3|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055518|pdb|1VU3|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056010|pdb|4F77|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453056018|pdb|4F77|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453056026|pdb|4F77|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453056034|pdb|4F77|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453056042|pdb|4F77|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453056050|pdb|4F77|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056062|pdb|4F77|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|338265|gb|AAA36620.1| small nuclear riboprotein Sm-D [Homo sapiens]
gi|705366|gb|AAA85339.1| small nuclear ribonucleoprotein [Homo sapiens]
gi|1256741|gb|AAA96493.1| Sm-D autoantigen [Mus musculus]
gi|12804599|gb|AAH01721.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|12838127|dbj|BAB24092.1| unnamed protein product [Mus musculus]
gi|12841366|dbj|BAB25178.1| unnamed protein product [Mus musculus]
gi|12847588|dbj|BAB27628.1| unnamed protein product [Mus musculus]
gi|12850214|dbj|BAB28635.1| unnamed protein product [Mus musculus]
gi|19354162|gb|AAH24875.1| Small nuclear ribonucleoprotein D1 [Mus musculus]
gi|48734707|gb|AAH72427.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|49457472|emb|CAG47035.1| SNRPD1 [Homo sapiens]
gi|67970653|dbj|BAE01669.1| unnamed protein product [Macaca fascicularis]
gi|73586929|gb|AAI02988.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Bos taurus]
gi|74144965|dbj|BAE22192.1| unnamed protein product [Mus musculus]
gi|74193588|dbj|BAE22759.1| unnamed protein product [Mus musculus]
gi|119621535|gb|EAX01130.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|149031722|gb|EDL86672.1| small nuclear ribonucleoprotein D1 (predicted) [Rattus
norvegicus]
gi|187469818|gb|AAI67095.1| Small nuclear ribonucleoprotein D1 [Rattus norvegicus]
gi|197127450|gb|ACH43948.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197127451|gb|ACH43949.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197129948|gb|ACH46446.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197692155|dbj|BAG70041.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|197692401|dbj|BAG70164.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|208967432|dbj|BAG73730.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
gi|296473819|tpg|DAA15934.1| TPA: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|344251470|gb|EGW07574.1| Small nuclear ribonucleoprotein Sm D1 [Cricetulus griseus]
gi|380815842|gb|AFE79795.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|383420995|gb|AFH33711.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|384948966|gb|AFI38088.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|410215894|gb|JAA05166.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410253718|gb|JAA14826.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410297902|gb|JAA27551.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410328399|gb|JAA33146.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
Length = 119
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>gi|345327225|ref|XP_001510929.2| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Ornithorhynchus anatinus]
Length = 203
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TV+++ L RG + + N +L+ +TYT + G+ QL+ +F+ G
Sbjct: 18 VILLQGLVGQVTTVDMRDESLARGRVANVDAFMNIRLDQVTYTDRWGREVQLDDLFVAGR 77
Query: 69 KVRFMVIPDMLKNAPMFKR 87
VR++ IPD + A +R
Sbjct: 78 SVRYVHIPDGVDIAATIER 96
>gi|392562210|gb|EIW55391.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 122
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VTVELK+G + G++ + N L+ + TA++ + + L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ V+PD L
Sbjct: 64 NIRYFVLPDAL 74
>gi|355701859|gb|EHH29212.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca mulatta]
gi|355754930|gb|EHH58797.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca
fascicularis]
Length = 119
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 7 IPV-KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
IP+ + L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + I
Sbjct: 1 IPIYRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGK 95
RG+ +R+ ++PD L + ++ ++K K
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSK 90
>gi|357149831|ref|XP_003575247.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Brachypodium
distachyon]
Length = 114
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLIEETPRVKPKKPTAG 95
>gi|339250640|ref|XP_003374305.1| putative LSM domain protein [Trichinella spiralis]
gi|316969411|gb|EFV53512.1| putative LSM domain protein [Trichinella spiralis]
Length = 154
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 8 PVKLLH---EASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
P+KL+H S VT+ELK+G + G++ + N L + T KDG+ QL+ +
Sbjct: 32 PIKLVHFLMNLSRETVTIELKNGTILHGTVTGVDIAMNTHLRAVKMTMKDGETVQLDVMS 91
Query: 65 IRGSKVRFMVIPD 77
+RG+ +R+ ++PD
Sbjct: 92 VRGNNIRYFILPD 104
>gi|388509846|gb|AFK42989.1| unknown [Lotus japonicus]
Length = 116
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
>gi|326676382|ref|XP_003200562.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Danio
rerio]
Length = 120
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TV+L+ RG ++ + N +LEN+ Y + G+ S ++ +FI G
Sbjct: 18 VILLQGLHGQVTTVDLRDESTARGRVINVDAFMNIRLENVLYRDRRGRKSSMDDLFITGR 77
Query: 69 KVRFMVIPDML 79
VR++ IPD +
Sbjct: 78 NVRYVHIPDQI 88
>gi|60832252|gb|AAX37003.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
Length = 120
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>gi|443922492|gb|ELU41935.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VTVELK+G + G++ + N L+N+ T+++ + + L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTVELKNGSVVHGTLTGVDVQMNTHLKNVKLTSRNREPTALDTLSIRGN 63
Query: 69 KVRFMVIPDMLK 80
+R+ V+PD L
Sbjct: 64 NIRYFVLPDALN 75
>gi|391341871|ref|XP_003745250.1| PREDICTED: uncharacterized protein LOC100904769 [Metaseiulus
occidentalis]
Length = 196
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ L A H + VELK+GE Y G +V C DNW N L + +++G KV ++ +
Sbjct: 82 LPLSPLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLGEVICKSREGDKVWRIPECY 140
Query: 65 IRGSKVRFMVIPD 77
+R + +RF IPD
Sbjct: 141 VRCNTIRFPRIPD 153
>gi|390981143|pdb|4EMH|A Chain A, Crystal Structure Of Splsm4
gi|390981144|pdb|4EMH|B Chain B, Crystal Structure Of Splsm4
gi|390981145|pdb|4EMH|C Chain C, Crystal Structure Of Splsm4
gi|390981146|pdb|4EMH|D Chain D, Crystal Structure Of Splsm4
gi|390981147|pdb|4EMH|E Chain E, Crystal Structure Of Splsm4
gi|390981148|pdb|4EMH|F Chain F, Crystal Structure Of Splsm4
gi|390981149|pdb|4EMH|G Chain G, Crystal Structure Of Splsm4
gi|390981150|pdb|4EMH|H Chain H, Crystal Structure Of Splsm4
gi|390981151|pdb|4EMH|I Chain I, Crystal Structure Of Splsm4
gi|390981152|pdb|4EMH|J Chain J, Crystal Structure Of Splsm4
gi|390981153|pdb|4EMH|K Chain K, Crystal Structure Of Splsm4
gi|390981154|pdb|4EMH|L Chain L, Crystal Structure Of Splsm4
gi|390981155|pdb|4EMH|M Chain M, Crystal Structure Of Splsm4
gi|390981156|pdb|4EMH|N Chain N, Crystal Structure Of Splsm4
gi|390981157|pdb|4EMH|O Chain O, Crystal Structure Of Splsm4
gi|390981158|pdb|4EMH|P Chain P, Crystal Structure Of Splsm4
gi|390981159|pdb|4EMH|Q Chain Q, Crystal Structure Of Splsm4
gi|390981160|pdb|4EMH|R Chain R, Crystal Structure Of Splsm4
gi|390981161|pdb|4EMH|T Chain T, Crystal Structure Of Splsm4
gi|390981162|pdb|4EMH|U Chain U, Crystal Structure Of Splsm4
gi|390981163|pdb|4EMH|V Chain V, Crystal Structure Of Splsm4
gi|390981164|pdb|4EMH|W Chain W, Crystal Structure Of Splsm4
gi|390981165|pdb|4EMH|X Chain X, Crystal Structure Of Splsm4
gi|390981166|pdb|4EMH|Y Chain Y, Crystal Structure Of Splsm4
Length = 105
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ G + VELK+GE + G + C++ N L + T DG K +L +I
Sbjct: 16 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYXNLTLREVIRTXPDGDKFFRLPECYI 75
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ I D
Sbjct: 76 RGNNIKYLRIQD 87
>gi|378734306|gb|EHY60765.1| hypothetical protein HMPREF1120_08709 [Exophiala dermatitidis
NIH/UT8656]
Length = 135
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V C+ N L+ + T+ +G + +L ++
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDRFWRLPEAYV 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +P+
Sbjct: 62 RGNNIKYLRVPE 73
>gi|213401339|ref|XP_002171442.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
gi|211999489|gb|EEB05149.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + +++ELK+G + G++ + N L+ + T KD + LE + IRGS
Sbjct: 4 VRFLMKLTNETISIELKNGTIVNGTITSVDMQMNTHLKAVKMTVKDREPVPLETLSIRGS 63
Query: 69 KVRFMVIPDML 79
VR+ ++PD L
Sbjct: 64 NVRYFILPDSL 74
>gi|46105460|ref|XP_380534.1| hypothetical protein FG00358.1 [Gibberella zeae PH-1]
gi|408400659|gb|EKJ79736.1| hypothetical protein FPSE_00016 [Fusarium pseudograminearum
CS3096]
Length = 126
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L N+ T K + LE + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|353242003|emb|CCA73778.1| related to U6 snRNA-associated Sm-like protein LSm4
[Piriformospora indica DSM 11827]
Length = 126
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P LL A G + VELK+GE + G +++C+ N L + TA D + +L+ V+I
Sbjct: 2 LPSSLLKAAQGKPMMVELKNGESFNGHLIDCDAFMNITLREVYQTAADSDRFWKLKEVYI 61
Query: 66 RGSKVRFMVIPDMLKNA 82
RGS ++++ + L +A
Sbjct: 62 RGSTIKYLQVQPALLDA 78
>gi|255559488|ref|XP_002520764.1| small nuclear ribonucleoprotein sm d1, putative [Ricinus communis]
gi|223540149|gb|EEF41726.1| small nuclear ribonucleoprotein sm d1, putative [Ricinus communis]
Length = 114
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
>gi|118394903|ref|XP_001029810.1| Sm protein [Tetrahymena thermophila]
gi|89284080|gb|EAR82147.1| Sm protein [Tetrahymena thermophila SB210]
Length = 111
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + G VT+ELK+G GS++ + N L + T K L+H+ IRG+
Sbjct: 4 VRFLMKLKGQTVTIELKNGTQIIGSIIAVDIRMNTHLSKVKMTIKGKNPVSLDHLTIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ +PD L
Sbjct: 64 NIRYFQLPDAL 74
>gi|242007513|ref|XP_002424584.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212508027|gb|EEB11846.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 126
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 12/108 (11%)
Query: 22 VELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIP--- 76
VELK+GE Y G +V C DNW N L + T++DG K ++ +IRGS ++++ IP
Sbjct: 3 VELKNGETYNGHLVSC-DNWMNIILREVICTSRDGDKFWRMPECYIRGSTIKYVRIPDEV 61
Query: 77 -DMLKNAPMFK-RLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAP 122
DM+K + K R +K +S+S G GR + GRG +
Sbjct: 62 IDMVKEEAVLKSRGRGELKNRSNSNQRG-GRGT---GRNQFGGRGKSS 105
>gi|157876556|ref|XP_001686624.1| putative small nuclear ribonucleaoprotein [Leishmania major
strain Friedlin]
gi|68129699|emb|CAJ09005.1| putative small nuclear ribonucleaoprotein [Leishmania major
strain Friedlin]
Length = 141
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECE-DNWNCQLENITYTAKDGKVSQLEHVF 64
IP L+ EA VT+E G++Y+G++ + N +L + + AKD E V
Sbjct: 10 DIPSSLVFEAMHSRVTIETVEGDVYKGTLAAFDISRGNIELVEVRHQAKDSTFGFYERVT 69
Query: 65 IRGSKVRFMVIPDMLKNAPMFK 86
+RGSK+R +++P +K AP +
Sbjct: 70 VRGSKIRIVLLPPEMKAAPSLQ 91
>gi|449304089|gb|EMD00097.1| hypothetical protein BAUCODRAFT_30555 [Baudoinia compniacensis
UAMH 10762]
Length = 130
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L T K G L+ + IRGS
Sbjct: 4 VRFLMKCTNETVTIELKTGAIVHGTIASVSPQMNTNLRAAKMTPKGGSQISLDQISIRGS 63
Query: 69 KVRFMVIPDML 79
++R+ ++PD L
Sbjct: 64 EIRYFILPDSL 74
>gi|154297620|ref|XP_001549236.1| hypothetical protein BC1G_12655 [Botryotinia fuckeliana B05.10]
gi|347842491|emb|CCD57063.1| hypothetical protein [Botryotinia fuckeliana]
Length = 137
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K+G L+ + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGTSLTLDVINLRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|388583883|gb|EIM24184.1| Sm-like ribonucleo protein, partial [Wallemia sebi CBS 633.66]
Length = 115
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 20 VTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDML 79
VT+ELK+G + G+M+ C+ + N L ++ ++ L+ + IRG+ +R++++PD L
Sbjct: 8 VTIELKNGSVVHGTMINCDPSMNAHLRSVKLITRNLPACNLDTISIRGNNIRYVILPDSL 67
>gi|198470479|ref|XP_002133476.1| GA22792 [Drosophila pseudoobscura pseudoobscura]
gi|198145470|gb|EDY72104.1| GA22792 [Drosophila pseudoobscura pseudoobscura]
Length = 137
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE Y G +V C+ N L ++ T+KDG + ++ +IRGS ++++ IPD
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPD 59
>gi|297848542|ref|XP_002892152.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337994|gb|EFH68411.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 117
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + RIK K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95
>gi|224066521|ref|XP_002302121.1| predicted protein [Populus trichocarpa]
gi|118482633|gb|ABK93236.1| unknown [Populus trichocarpa]
gi|118488779|gb|ABK96200.1| unknown [Populus trichocarpa]
gi|222843847|gb|EEE81394.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
>gi|367042806|ref|XP_003651783.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
gi|346999045|gb|AEO65447.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
Length = 121
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L N+ T K LE + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTVVHGTIASVSPQMNTALRNVKMTPKGQDAISLETLNVRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|294654851|ref|XP_456936.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
gi|199429198|emb|CAG84914.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
Length = 131
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 12 LHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVR 71
L A+ +TVELK+G G ++ C + N ++NI + L+ + IRG+++R
Sbjct: 10 LPNATNQPITVELKNGNSINGQILSCSPSMNLSMKNIKLSQPHQDPQLLQFINIRGNQIR 69
Query: 72 FMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+++PD L + R +IKG S G
Sbjct: 70 QILLPDELNVDNVLARSVVKIKGNGSGPG 98
>gi|297814015|ref|XP_002874891.1| hypothetical protein ARALYDRAFT_490274 [Arabidopsis lyrata subsp.
lyrata]
gi|297320728|gb|EFH51150.1| hypothetical protein ARALYDRAFT_490274 [Arabidopsis lyrata subsp.
lyrata]
Length = 116
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + RIK K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95
>gi|58265314|ref|XP_569813.1| glycine rich protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226045|gb|AAW42506.1| glycine rich protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 117
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A G + VELK+G + G +VEC+ N L + T+ DG + +++ +FI
Sbjct: 2 LPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFI 61
Query: 66 RGSKVRFMVIPD 77
+G+ +++ I D
Sbjct: 62 KGNIIKYFRIAD 73
>gi|15235510|ref|NP_192193.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|4263519|gb|AAD15345.1| small nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
gi|7269769|emb|CAB77769.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis thaliana]
gi|21536940|gb|AAM61281.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis thaliana]
gi|26450421|dbj|BAC42325.1| putative small nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
gi|114050553|gb|ABI49426.1| At4g02840 [Arabidopsis thaliana]
gi|332656836|gb|AEE82236.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 116
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + RIK K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95
>gi|440791795|gb|ELR13033.1| LSM domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 131
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDML- 79
VELK+GE Y G +V C+ N L ++ T++DG + ++ +IRG+ ++++ IPD +
Sbjct: 3 VELKNGETYNGHLVNCDGWMNINLRDVICTSRDGERFWRIPQCYIRGNTIKYLCIPDEVI 62
Query: 80 ----KNAPMFKR 87
+NAP+ K+
Sbjct: 63 DMVQENAPIPKQ 74
>gi|225436986|ref|XP_002277211.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Vitis vinifera]
gi|225436988|ref|XP_002277231.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Vitis vinifera]
Length = 114
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
>gi|339249295|ref|XP_003373635.1| putative LSM domain protein [Trichinella spiralis]
gi|316970184|gb|EFV54162.1| putative LSM domain protein [Trichinella spiralis]
Length = 307
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
P+ LL A H + +ELK+GE Y G + C D W N L ++ T+K+G + ++ F
Sbjct: 3 FPLTLLRTAQNHPMLIELKNGETYNGHLEAC-DCWMNVHLRDVICTSKEGDRFWRIPEAF 61
Query: 65 IRGSKVRFMVIPD 77
IRG ++++ IP+
Sbjct: 62 IRGCSIKYLRIPE 74
>gi|440804582|gb|ELR25459.1| small nuclear ribonucleoprotein Sm D1, putative [Acanthamoeba
castellanii str. Neff]
Length = 125
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G++ + + N L+ + T K L+ + IRG+
Sbjct: 4 VRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPINLDTLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIK------------GKSSSIGVGRGRAVAMRAKAAAA 116
+R+ ++PD L + R K G ++ G GR VA R AA A
Sbjct: 64 NIRYYLLPDTLNLDTLLVDDTPRPKPTKKVGEAGVPRGDVAAAGEGRAVPVAPREDAAGA 123
>gi|388508844|gb|AFK42488.1| unknown [Medicago truncatula]
Length = 115
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPRVKPKKPTAG 95
>gi|19113071|ref|NP_596279.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|12230213|sp|O14352.1|LSM4_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|2276355|emb|CAB10801.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe]
Length = 121
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ G + VELK+GE + G + C++ N L + T DG K +L +I
Sbjct: 2 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ I D
Sbjct: 62 RGNNIKYLRIQD 73
>gi|330943683|ref|XP_003306243.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
gi|311316316|gb|EFQ85673.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
Length = 132
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VTVELK+G + G++ N L + YT K L+ + +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGS 63
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 64 TIRYIILPDSL 74
>gi|189200737|ref|XP_001936705.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187983804|gb|EDU49292.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 132
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VTVELK+G + G++ N L + YT K L+ + +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGS 63
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 64 TIRYIILPDSL 74
>gi|291243481|ref|XP_002741624.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like isoform 1 [Saccoglossus kowalevskii]
Length = 118
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G L RG++ + + N L+ + T ++ Q++ + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTLVRGTITGVDVSMNTHLKAVKMTVRNKDPVQIDTLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|448524829|ref|XP_003869020.1| Smd1 protein [Candida orthopsilosis Co 90-125]
gi|380353373|emb|CCG22883.1| Smd1 protein [Candida orthopsilosis]
Length = 116
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 48/82 (58%)
Query: 14 EASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFM 73
++ VTVELK+G + G+++ C + N L+N+ K L+++ +RG+++R +
Sbjct: 12 NSTNQPVTVELKNGNIINGTLLSCTPSMNLNLKNVKLQQKYQDPILLQYINVRGNQIRQI 71
Query: 74 VIPDMLKNAPMFKRLDARIKGK 95
++P+ L + ++ +IKG+
Sbjct: 72 LLPEDLNIDSVLEKSQTKIKGQ 93
>gi|452004429|gb|EMD96885.1| hypothetical protein COCHEDRAFT_1163040 [Cochliobolus
heterostrophus C5]
Length = 130
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VTVELK+G + G++ N L + YT K L+ + +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGS 63
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 64 TIRYIILPDSL 74
>gi|451855386|gb|EMD68678.1| hypothetical protein COCSADRAFT_157089 [Cochliobolus sativus
ND90Pr]
Length = 131
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VTVELK+G + G++ N L + YT K L+ + +RGS
Sbjct: 4 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTVRGS 63
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 64 TIRYIILPDSL 74
>gi|345564647|gb|EGX47607.1| hypothetical protein AOL_s00083g115 [Arthrobotrys oligospora ATCC
24927]
Length = 132
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VTVELK+G + G++ N L + T ++ + L+ + IRGS
Sbjct: 4 VRFLMKCANETVTVELKNGTIIHGTITTVTPTMNTSLRTVRMTVRNREPQTLDTINIRGS 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSS 98
+R+ ++PD L + +D +K K+ +
Sbjct: 64 TIRYFILPDSLPLDTLL--IDDSVKAKNKA 91
>gi|312086540|ref|XP_003145116.1| hypothetical protein LOAG_09541 [Loa loa]
Length = 120
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELKSGE Y G +V C+ N L + T++DG + +++ V++RGS ++++ IPD
Sbjct: 3 VELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPD 59
>gi|255637946|gb|ACU19289.1| unknown [Glycine max]
Length = 116
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ V+PD L + +IK K + G
Sbjct: 64 NIRYYVLPDSLNLETLLVEETPKIKPKKPTAG 95
>gi|409048487|gb|EKM57965.1| hypothetical protein PHACADRAFT_251891 [Phanerochaete carnosa
HHB-10118-sp]
Length = 122
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + N L+ + TA++ + L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDPTSLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ V+PD L
Sbjct: 64 NIRYFVLPDAL 74
>gi|281343535|gb|EFB19119.1| hypothetical protein PANDA_000549 [Ailuropoda melanoleuca]
Length = 96
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 22 VELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE Y G +V C DNW N L + T++DG K ++ +IRGS ++++ IPD
Sbjct: 3 VELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPD 59
>gi|357017089|gb|AET50573.1| hypothetical protein [Eimeria tenella]
Length = 125
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + +ELK+G + G++V + N L+N+ T K ++H+ IRGS
Sbjct: 4 VRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|296086730|emb|CBI32365.3| unnamed protein product [Vitis vinifera]
Length = 144
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 34 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 93
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 94 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 125
>gi|303277487|ref|XP_003058037.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460694|gb|EEH57988.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 116
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S T+ELK+G + G+++ + + N L+N+ T K ++H+ +RG+
Sbjct: 4 VRFLQKLSHETCTIELKNGTVVHGTIMGVDISMNTHLKNVKMTLKGKNPVSMDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + +IK K
Sbjct: 64 NIRYYILPDSLNLDTLLVDDTPKIKSK 90
>gi|357440765|ref|XP_003590660.1| Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula]
gi|355479708|gb|AES60911.1| Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula]
Length = 114
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPRVKPKKPTAG 95
>gi|254574234|ref|XP_002494226.1| hypothetical protein [Komagataella pastoris GS115]
gi|238034025|emb|CAY72047.1| Hypothetical protein PAS_chr4_0781 [Komagataella pastoris GS115]
gi|328353953|emb|CCA40350.1| Probable small nuclear ribonucleoprotein Sm D1 [Komagataella
pastoris CBS 7435]
Length = 115
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + V VELK+G + G+++ + N L+N+ T ++ LE + IRG+
Sbjct: 4 VRFLMKLISEQVQVELKNGTIVSGTIISVTPSMNINLKNVKMTVRNRNPVSLEFINIRGN 63
Query: 69 KVRFMVIPDML 79
VR +++PD L
Sbjct: 64 NVRIVILPDNL 74
>gi|388516873|gb|AFK46498.1| unknown [Lotus japonicus]
Length = 115
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSVRGT 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPRVKSKKPTAG 95
>gi|213406934|ref|XP_002174238.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
gi|212002285|gb|EEB07945.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A G + VELK+GE + G + +C++ N L+ + T +G K ++ +I
Sbjct: 2 LPLTLLNAAQGRPILVELKNGETFNGHLEKCDNYMNLTLQEVIQTMPEGDKFFRMPECYI 61
Query: 66 RGSKVRFMVIPDML 79
RG+ ++++ + D L
Sbjct: 62 RGNNIKYLRVQDEL 75
>gi|396483691|ref|XP_003841766.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
gi|312218341|emb|CBX98287.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
Length = 222
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VTVELK+G + G++ N L + YT K L+ + +RGS
Sbjct: 95 VRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDSMTVRGS 154
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 155 TIRYVILPDSL 165
>gi|170041265|ref|XP_001848390.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
gi|167864864|gb|EDS28247.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
Length = 156
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE Y G +V C+ N L + T+KDG K ++ +IRGS ++++ IPD
Sbjct: 4 VELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPECYIRGSTIKYLRIPD 60
>gi|171684873|ref|XP_001907378.1| hypothetical protein [Podospora anserina S mat+]
gi|170942397|emb|CAP68049.1| unnamed protein product [Podospora anserina S mat+]
Length = 125
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VT+ELK G + G++ N L N+ T + + QLE + +RGS
Sbjct: 4 VRFLMKCQNESVTIELKGGTIISGTIASVSPQMNTALRNVKMTPRGQETIQLETLNVRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|115446977|ref|NP_001047268.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|46806276|dbj|BAD17484.1| putative small nuclear ribonucleoprotein D1 polypeptide 16kDa;
snRNP core protein D1; Sm-D autoantigen [Oryza sativa
Japonica Group]
gi|113536799|dbj|BAF09182.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|125582674|gb|EAZ23605.1| hypothetical protein OsJ_07305 [Oryza sativa Japonica Group]
Length = 114
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G G++ + + N L+ + T K +H+ +RG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKAKKPTAG 95
>gi|294950553|ref|XP_002786687.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239900979|gb|EER18483.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VTVELK+G + G++ + + N ++N+ T + ++H+ IRGS
Sbjct: 4 VRFLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNPVGMDHLTIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD +
Sbjct: 64 TIRYFILPDHI 74
>gi|237842601|ref|XP_002370598.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|211968262|gb|EEB03458.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|221502719|gb|EEE28439.1| small nuclear ribonucleoprotein sm, putative [Toxoplasma gondii
VEG]
Length = 214
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A + VELKSGE Y G + C+ N L++ T+KDG + +L +I
Sbjct: 3 LPLTLLRAAQNRPMMVELKSGETYSGLLASCDGFMNLHLKDSVCTSKDGERFWKLSECYI 62
Query: 66 RGSKVRFMVIPD 77
RG+ V+++ + D
Sbjct: 63 RGNMVKYIRLQD 74
>gi|294944597|ref|XP_002784335.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239897369|gb|EER16131.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VTVELK+G + G++ + + N ++N+ T + ++H+ IRGS
Sbjct: 4 VRFLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNPVGMDHLTIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD +
Sbjct: 64 TIRYFILPDHI 74
>gi|356499683|ref|XP_003518666.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Glycine max]
Length = 116
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + +IK K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPKIKPKKPTAG 95
>gi|294463522|gb|ADE77290.1| unknown [Picea sitchensis]
Length = 114
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKIPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + RIK K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95
>gi|359806624|ref|NP_001241019.1| uncharacterized protein LOC100819089 [Glycine max]
gi|255647733|gb|ACU24327.1| unknown [Glycine max]
Length = 115
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + +IK K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPKIKPKKPTAG 95
>gi|407917344|gb|EKG10658.1| hypothetical protein MPH_12237 [Macrophomina phaseolina MS6]
Length = 122
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VT+ELK+G + G++ N L + T K+ + L+ + IRGS
Sbjct: 4 VRFLMKCQNETVTIELKNGTVVNGTIASVSPTMNTALRTVKMTPKNRETMTLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|358410942|ref|XP_001254398.4| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|359063093|ref|XP_002685437.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
Length = 118
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + I+G+
Sbjct: 4 VRFLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>gi|296490547|tpg|DAA32660.1| TPA: small nuclear ribonucleoprotein D1 polypeptide 16kDa-like
[Bos taurus]
Length = 134
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + I+G+
Sbjct: 4 VRFLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>gi|50545437|ref|XP_500256.1| YALI0A19756p [Yarrowia lipolytica]
gi|49646121|emb|CAG84194.1| YALI0A19756p [Yarrowia lipolytica CLIB122]
Length = 131
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENI-TYTAKDGKVSQLEHVF 64
+P+ LL+ A G + VELKSGE RG +++C D+W N L+ + ++A + + +
Sbjct: 4 LPLSLLNAAQGQPMLVELKSGESLRGHLLKC-DHWMNLTLKEVEEFSASGENTATVSEYY 62
Query: 65 IRGSKVRFMVIPDML 79
+RGS ++ + +PD L
Sbjct: 63 VRGSNIKALQLPDEL 77
>gi|351709761|gb|EHB12680.1| Small nuclear ribonucleoprotein Sm D1, partial [Heterocephalus
glaber]
Length = 115
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 1 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 60
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 61 IRYFILPDSLPLDTLLVDVEPKVKSK 86
>gi|425777993|gb|EKV16140.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum Pd1]
gi|425780629|gb|EKV18635.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum PHI26]
Length = 125
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VTVELK+G + G++V N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTVELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDTISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|414586803|tpg|DAA37374.1| TPA: hypothetical protein ZEAMMB73_218857 [Zea mays]
Length = 108
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75
+ VT+ELK+G + G++ + + N L+ + T K L+H+ +RG+ +R+ ++
Sbjct: 4 NNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYIL 63
Query: 76 PDMLKNAPMFKRLDARIKGKSSSIG 100
PD L + R+K K + G
Sbjct: 64 PDSLNLETLLVEETPRVKPKKPTTG 88
>gi|413918616|gb|AFW58548.1| hypothetical protein ZEAMMB73_336389 [Zea mays]
Length = 109
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75
+ VT+ELK+G + G++ + + N L+ + T K L+H+ +RG+ +R+ ++
Sbjct: 4 NNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYIL 63
Query: 76 PDMLKNAPMFKRLDARIKGKSSSIG 100
PD L + R+K K + G
Sbjct: 64 PDSLNLETLLVEETPRVKPKKPTTG 88
>gi|326922125|ref|XP_003207302.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
Sm D1-like [Meleagris gallopavo]
Length = 118
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 63
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 IRYFILPDSLPLDTLLVDVEPKVKSK 89
>gi|145345472|ref|XP_001417233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577460|gb|ABO95526.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 114
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G+++ + + N L+ + T K + +EH+ +RG+
Sbjct: 4 VRFLQKLSNESVTIELKNGTTAHGTIMGVDVSMNTHLKQVKLTLKGKNPTAVEHLSVRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|116192449|ref|XP_001222037.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
gi|88181855|gb|EAQ89323.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
Length = 125
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L N+ T + + LE + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQEPIHLETLNVRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|440897495|gb|ELR49167.1| hypothetical protein M91_06507, partial [Bos grunniens mutus]
Length = 121
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 11 LLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKV 70
L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+ +
Sbjct: 1 FLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 60
Query: 71 RFMVIPDMLKNAPMFKRLDARIKGK 95
R+ ++PD L + ++ ++K K
Sbjct: 61 RYFILPDSLPLDTLLVDVEPKVKSK 85
>gi|444723132|gb|ELW63794.1| Small nuclear ribonucleoprotein Sm D1 [Tupaia chinensis]
Length = 124
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+KL HE VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 1 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 56
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 57 NIRYFILPDSLPLDTLLVDVEPKVKSK 83
>gi|149720998|ref|XP_001492698.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Equus
caballus]
Length = 116
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
++ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 1 MQFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 60
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 61 NIRYFILPDSLPLDTLLVDVEPKVKSK 87
>gi|339250642|ref|XP_003374306.1| putative LSM domain protein [Trichinella spiralis]
gi|316969410|gb|EFV53511.1| putative LSM domain protein [Trichinella spiralis]
Length = 120
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G++ + N L + T KDG+ QL+ + +RG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTILHGTISGVDVAMNTHLRAVKMTLKDGQTVQLDVLSVRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++P+ +
Sbjct: 64 NIRYFILPETI 74
>gi|154345502|ref|XP_001568688.1| putative small nuclear ribonucleaoprotein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134066030|emb|CAM43815.1| putative small nuclear ribonucleaoprotein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 141
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECE-DNWNCQLENITYTAKDGKVSQLEHVF 64
IP ++ EA VTVE G+LY+G + + + N +L ++ + AKD E V
Sbjct: 10 DIPSSVVFEALHLRVTVETVEGDLYKGKLADFDVSRGNIELVDVRHQAKDSTYRFYERVT 69
Query: 65 IRGSKVRFMVIPDMLKNAPMFK 86
+RGS +R +++P +K AP +
Sbjct: 70 VRGSNIRIILLPQEMKAAPSLQ 91
>gi|449269384|gb|EMC80160.1| Small nuclear ribonucleoprotein Sm D1, partial [Columba livia]
Length = 117
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 3 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 62
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 63 IRYFILPDSLPLDTLLVDVEPKVKSK 88
>gi|363730104|ref|XP_001235936.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Gallus gallus]
Length = 112
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+KL HE VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 1 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 56
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 57 NIRYFILPDSLPLDTLLVDVEPKVKSK 83
>gi|241959636|ref|XP_002422537.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223645882|emb|CAX40545.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 126
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 12 LHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVR 71
+ ++ +TVELK+G + G+++ C N L+N+ L+++ IRG++VR
Sbjct: 10 IPNSTTQPITVELKNGNIISGTLLSCNPPMNLNLKNVKLQQPLQDPILLQYINIRGNQVR 69
Query: 72 FMVIPDMLKNAPMFKRLDARIKGK 95
+++PD L + + + +IKG
Sbjct: 70 QILLPDELNIESVLVKSETKIKGN 93
>gi|281354424|gb|EFB30008.1| hypothetical protein PANDA_018320 [Ailuropoda melanoleuca]
Length = 90
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 1 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 60
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 61 IRYFILPDSLPLDTLLVDVEPKVKSK 86
>gi|410966946|ref|XP_003989986.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Felis catus]
Length = 244
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ LL G V TV+L+ + RG + + N +L N+TYT + G +L+ +F+ G
Sbjct: 139 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 198
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 199 NVRYVHIPD 207
>gi|392589390|gb|EIW78721.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + N L+ + TA++ + L+ + IRG+
Sbjct: 4 VRFLMKLNNETVSIELKNGSVVNGTITGVDMQMNTHLKTVKMTARNRDPTSLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R++V+PD L
Sbjct: 64 NIRYIVLPDAL 74
>gi|344287217|ref|XP_003415351.1| PREDICTED: hypothetical protein LOC100665419 [Loxodonta africana]
Length = 258
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ LL G V TV+L+ + RG + + N +L N+TYT + G +L+ +F+ G
Sbjct: 18 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>gi|440903491|gb|ELR54142.1| Small nuclear ribonucleoprotein Sm D1, partial [Bos grunniens
mutus]
Length = 117
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 3 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 62
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 63 IRYFILPDSLPLDTLLVDVEPKVKSK 88
>gi|321254335|ref|XP_003193040.1| hypothetical protein CGB_C7440C [Cryptococcus gattii WM276]
gi|317459509|gb|ADV21253.1| hypothetical protein CNBC2050 [Cryptococcus gattii WM276]
Length = 141
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A G + VELK+G + G +VEC+ N L + T+ DG + +++ +FI
Sbjct: 2 LPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFI 61
Query: 66 RGSKVRFMVIPD 77
+G+ +++ I D
Sbjct: 62 KGNIIKYFRIAD 73
>gi|45200801|ref|NP_986371.1| AGL296Wp [Ashbya gossypii ATCC 10895]
gi|44985499|gb|AAS54195.1| AGL296Wp [Ashbya gossypii ATCC 10895]
gi|374109616|gb|AEY98521.1| FAGL296Wp [Ashbya gossypii FDAG1]
Length = 168
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQLEHVFI 65
+P+ LL A G + +ELK+GE G +V DNW N L+++ + D + QL +++
Sbjct: 2 LPLYLLTNAKGQKLFIELKNGETIEGELVNV-DNWMNLTLQSVVHAGSD-QTLQLPEIYV 59
Query: 66 RGSKVRFMVIPD 77
RGS ++++ + D
Sbjct: 60 RGSFIKYIRLQD 71
>gi|224082616|ref|XP_002306766.1| predicted protein [Populus trichocarpa]
gi|222856215|gb|EEE93762.1| predicted protein [Populus trichocarpa]
Length = 112
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + ++K K + G
Sbjct: 64 NIRYYILPDSLNLETLLIEETPKVKPKKPTAG 95
>gi|317135015|gb|ADV03070.1| SmD1 protein [Amphidinium carterae]
Length = 111
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S V VELK+ + G++ + + N ++NI +T K ++H+ IRG+
Sbjct: 4 VRFLMKLSNESVVVELKNSTVVSGTITGVDVSMNTHMKNIKFTVKGKPPIAMDHLTIRGN 63
Query: 69 KVRFMVIPD 77
+R++V+PD
Sbjct: 64 NIRYVVLPD 72
>gi|313226324|emb|CBY21468.1| unnamed protein product [Oikopleura dioica]
gi|313241294|emb|CBY33571.1| unnamed protein product [Oikopleura dioica]
Length = 127
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + N L+N+ T K + QL+ + IRG+
Sbjct: 5 RFLMKLSHETVTIELKNGTQVVGTIAGVDICMNTHLKNVRLTVKGREPQQLDALSIRGNN 64
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
+R+ ++PD + + + +G S+ GRGR
Sbjct: 65 IRYYILPDSVPLDTLLIDDGPKARGGGSTRDRGRGRG 101
>gi|224082027|ref|XP_002198423.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TVEL+ G + + N +L +T+T + G VSQL+ +F+ G
Sbjct: 18 VILLQGLRGRVTTVELRDESAAAGRVTSVDAFMNVRLAEVTFTDRQGAVSQLDELFVTGR 77
Query: 69 KVRFMVIPD 77
+R++ IPD
Sbjct: 78 NIRYVHIPD 86
>gi|367020776|ref|XP_003659673.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
gi|347006940|gb|AEO54428.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
Length = 118
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L N+ T + LE + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLETLNVRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|431896295|gb|ELK05711.1| Small nuclear ribonucleoprotein Sm D1 [Pteropus alecto]
Length = 122
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 8 QFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 67
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 68 IRYFILPDSLPLDTLLVDVEPKVKSK 93
>gi|312077154|ref|XP_003141178.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
gi|307763657|gb|EFO22891.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
Length = 123
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+KL HE+ VT+ELK+G L G++V + N L + T K+ + L+ + IRG+
Sbjct: 8 MKLAHES----VTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVSLDSLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRA 106
+R++++PD + + + R K GRGRA
Sbjct: 64 NIRYIILPDTIPLDTLLVDDEPRKKPARG----GRGRA 97
>gi|356504916|ref|XP_003521240.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Glycine max]
gi|356504918|ref|XP_003521241.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Glycine max]
Length = 114
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + +IK K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPKIKPKKPTAG 95
>gi|157093137|gb|ABV22223.1| small nuclear ribonucleoprotein Sm D1 [Karlodinium micrum]
Length = 112
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S V VELK+ + G++ + + N ++N+ +T K ++H+ IRG+
Sbjct: 4 VRFLMKLSNESVVVELKNSTVVAGTITGVDVSMNTHMKNVKFTVKGKPPVSMDHLTIRGN 63
Query: 69 KVRFMVIPD 77
VR++++PD
Sbjct: 64 NVRYVILPD 72
>gi|154281585|ref|XP_001541605.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411784|gb|EDN07172.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225563163|gb|EEH11442.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces capsulatus
G186AR]
Length = 123
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + TAK L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTAKGRDPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|341038646|gb|EGS23638.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 118
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + L N+ YT K + +E + +RG+
Sbjct: 4 VRFLMKCANETVTIELKNGAIVHGTIASVTPKMDTALRNVRYTPKGEEPYSVESLTVRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|325188130|emb|CCA22672.1| small nuclear ribonucleoprotein Sm D1 putative [Albugo laibachii
Nc14]
Length = 114
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G++ + + N L+ + TAK L+ + IRG+
Sbjct: 4 VRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTAKGKNPQTLDTLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|448080879|ref|XP_004194749.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359376171|emb|CCE86753.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 130
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A + VELK+GE G +V C D+W N L N+ +++G +L +
Sbjct: 2 LPLYLLTSAKNQPILVELKNGETLNGELVNC-DSWMNLTLNNVVQVSENGTNFLKLPECY 60
Query: 65 IRGSKVRFMVIPDML 79
+RG+ +++M +P+ L
Sbjct: 61 VRGNHIKYMRLPEEL 75
>gi|403412301|emb|CCL99001.1| predicted protein [Fibroporia radiculosa]
Length = 743
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + N L+ + TA++ + + L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ V+PD L
Sbjct: 64 NIRYFVLPDAL 74
>gi|402589501|gb|EJW83433.1| small nuclear ribonucleoprotein Sm D1 [Wuchereria bancrofti]
Length = 123
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+KL HE+ VT+ELK+G L G++V + N L + T K+ + L+ + IRG+
Sbjct: 8 MKLAHES----VTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVSLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R++++PD +
Sbjct: 64 NIRYIILPDTI 74
>gi|407920870|gb|EKG14049.1| Protein-tyrosine phosphatase receptor/non-receptor type
[Macrophomina phaseolina MS6]
Length = 1134
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 22 VELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDML 79
VELK+GE G +V C DNW N L+ + T+ DG + +L V+IRG+ ++++ +PD +
Sbjct: 3 VELKNGETLNGHLVNC-DNWMNLTLKEVVQTSPDGDRFWRLPEVYIRGNNIKYLRVPDEI 61
>gi|363814443|ref|NP_001242856.1| uncharacterized protein LOC100778485 [Glycine max]
gi|255640505|gb|ACU20538.1| unknown [Glycine max]
Length = 114
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGAVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + +IK K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEEAPKIKPKKPTAG 95
>gi|255075581|ref|XP_002501465.1| predicted protein [Micromonas sp. RCC299]
gi|226516729|gb|ACO62723.1| predicted protein [Micromonas sp. RCC299]
Length = 117
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G+++ + + N L+N+ T K ++H+ +RG+
Sbjct: 4 VRFLQKLSHESVTIELKNGTVIAGTIMGVDVSMNTHLKNVKMTLKGKNPVSMDHLSVRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|32959908|emb|CAE11897.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
Length = 119
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S V +ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>gi|402087104|gb|EJT82002.1| small nuclear ribonucleoprotein Sm D1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 123
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L N+ T + L+ + IRGS
Sbjct: 4 VRFLMKCTNETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|395830185|ref|XP_003788215.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 1
[Otolemur garnettii]
gi|395830187|ref|XP_003788216.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 2
[Otolemur garnettii]
Length = 123
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 11 LLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKV 70
LL G V TV+L+ + RG + + N +L N+TYT + G +L+ +F+ G V
Sbjct: 20 LLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRRGHQVELDDLFVTGRNV 79
Query: 71 RFMVIPD 77
R++ IPD
Sbjct: 80 RYVHIPD 86
>gi|148674280|gb|EDL06227.1| mCG21971 [Mus musculus]
Length = 134
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + I+G+
Sbjct: 19 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGT 78
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K +
Sbjct: 79 NIRYFILPDSLPLDTLLVDVEPKVKSR 105
>gi|112253614|gb|ABI14393.1| small nuclear riboprotein Sm-D1 [Karlodinium micrum]
Length = 112
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S V VELK+ + G++ + + N ++N+ +T K ++H+ IRG+
Sbjct: 4 VRFLMKLSNESVVVELKNSTVVAGTITGVDVSMNTHMKNVKFTVKGEPPVSMDHLTIRGN 63
Query: 69 KVRFMVIPD 77
VR++++PD
Sbjct: 64 NVRYVILPD 72
>gi|449457365|ref|XP_004146419.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 138
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG 55
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG 50
>gi|336375284|gb|EGO03620.1| hypothetical protein SERLA73DRAFT_175163 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388346|gb|EGO29490.1| hypothetical protein SERLADRAFT_457290 [Serpula lacrymans var.
lacrymans S7.9]
Length = 121
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + N L+ + T ++ + L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPTSLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ V+PD L
Sbjct: 64 NIRYFVLPDAL 74
>gi|149250230|ref|XP_001481216.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Mus musculus]
gi|309264642|ref|XP_003086326.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Mus
musculus]
Length = 119
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + I+G+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIQGT 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K +
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSR 90
>gi|156369567|ref|XP_001628047.1| predicted protein [Nematostella vectensis]
gi|156215013|gb|EDO35984.1| predicted protein [Nematostella vectensis]
Length = 120
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 64 NIRYFILPESL 74
>gi|449464778|ref|XP_004150106.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis
sativus]
gi|449476727|ref|XP_004154817.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis
sativus]
Length = 114
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K ++H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
>gi|224082029|ref|XP_002198421.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TVEL+ G + + N +L +T+T + G VSQL+ +F+ G
Sbjct: 18 VILLQGLRGRVTTVELRDESAAAGRVTSVDAFMNVRLAEVTFTDRRGAVSQLDELFVTGR 77
Query: 69 KVRFMVIPD 77
+R++ IPD
Sbjct: 78 NIRYVHIPD 86
>gi|357623693|gb|EHJ74743.1| small nuclear ribonucleoprotein Sm D1 [Danaus plexippus]
Length = 125
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G++ + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFLLPDSL 74
>gi|290984572|ref|XP_002675001.1| predicted protein [Naegleria gruberi]
gi|284088594|gb|EFC42257.1| predicted protein [Naegleria gruberi]
Length = 130
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDMLK 80
VELK+GE + G++ C+ N LE++T T++DG + +++ V+IRG ++++ I D +
Sbjct: 3 VELKNGETFNGTLTNCDQFMNMNLEDVTCTSRDGTRFWKMDKVYIRGYTLKYIRILDEII 62
Query: 81 N 81
N
Sbjct: 63 N 63
>gi|116784296|gb|ABK23291.1| unknown [Picea sitchensis]
Length = 114
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V +ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVNIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKSPVTLDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + +IK K + G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPKIKPKRPTAG 95
>gi|380495060|emb|CCF32683.1| small nuclear ribonucleoprotein Sm D1 [Colletotrichum
higginsianum]
Length = 124
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|448085360|ref|XP_004195840.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359377262|emb|CCE85645.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 126
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A + VELK+GE G +V C+ N L N+ + +G +L ++
Sbjct: 2 LPLYLLTSAKNQPILVELKNGETLNGELVNCDSWMNLTLNNVIQVSANGTNFLKLPECYV 61
Query: 66 RGSKVRFMVIPDML 79
RG+ +++M +P+ L
Sbjct: 62 RGNHIKYMRLPEEL 75
>gi|310793785|gb|EFQ29246.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 124
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|225462054|ref|XP_002275736.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis
vinifera]
Length = 114
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K ++H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSVRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD + + R+K K + G
Sbjct: 64 NIRYYILPDSINLETLLVEETPRVKPKKPTAG 95
>gi|358391553|gb|EHK40957.1| hypothetical protein TRIATDRAFT_301687 [Trichoderma atroviride
IMI 206040]
Length = 120
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VTVELK+G + G++ N L + TA+ L+ + IRGS
Sbjct: 4 VRFLMKCSNETVTVELKNGTIVHGTISSVSPQMNVALRTVKMTARGQDSLALDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|448082775|ref|XP_004195217.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359376639|emb|CCE87221.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 9 VKLLHEASGHV---VTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
V+ L S + VT+ELK+G G ++ C + N ++N+ L+++ I
Sbjct: 4 VRFLMNFSNYTSQPVTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYMNI 63
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGK------SSSIGVGRGRAVAMRAKAAAAGRG 119
RG+++R +++PD L + + IKG+ S+ G+G A+ +A G
Sbjct: 64 RGNQIRLVILPDDLNIDSVLAKSAVTIKGQGAGPGSQSTNGIGTKGAMGRNKRAPRGGAR 123
Query: 120 AAP 122
A P
Sbjct: 124 ARP 126
>gi|42491563|gb|AAS16923.1| small nuclear ribonucleoprotein D3 polypeptide [Prionace glauca]
Length = 34
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 21 TVELKSGELYRGSMVECEDNWNCQLENITYTAKD 54
T E +GE+YRG ++E EDN NCQ+ NIT T +D
Sbjct: 1 TCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD 34
>gi|388583911|gb|EIM24212.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 126
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELKSGE + G ++ C++ N L+ + T DG + +L ++
Sbjct: 2 LPLTLLNGAQNKPLLVELKSGETFNGHLIACDNYMNLTLKQVFQTNADGERFWKLPECYL 61
Query: 66 RGSKVRFMVIPDML 79
RG+ ++++ + D L
Sbjct: 62 RGNTIKYIRVADEL 75
>gi|134109199|ref|XP_776714.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259394|gb|EAL22067.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 147
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A G + VELK+G + G +VEC+ N L + T+ DG + +++ +FI
Sbjct: 2 LPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFI 61
Query: 66 RGSKVRFMVIPD 77
+G+ +++ I D
Sbjct: 62 KGNIIKYFRIAD 73
>gi|212528972|ref|XP_002144643.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
gi|210074041|gb|EEA28128.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
Length = 126
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K + L+ + IRGS
Sbjct: 4 VRFLMKCTNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|255932631|ref|XP_002557872.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582491|emb|CAP80678.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VTVELK+G + G++V N L + T K L+ + +RGS
Sbjct: 4 VRFLMKCANETVTVELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDPVSLDTINVRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|410911580|ref|XP_003969268.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like [Takifugu
rubripes]
Length = 135
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TV+L++ RG ++ + N +LE + Y + G+++ L+ +F+ G
Sbjct: 31 VVLLQGLQGEVTTVDLRNECTARGRIINVDAFMNIRLEAVLYRDRRGQIANLQDLFVTGR 90
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIK 93
VR++ IPD + + ARI+
Sbjct: 91 NVRYVHIPDHVDIMRTIQTQLARIR 115
>gi|344230315|gb|EGV62200.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 140
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKV-SQLEHVFI 65
+P+ LL+ A + VELK+GE G + C+ N L + T+ + +V +++ ++I
Sbjct: 2 LPLYLLNSAKSQPILVELKNGETLNGLLTNCDSWMNLTLSEVIQTSPNAEVFTKIPEIYI 61
Query: 66 RGSKVRFMVIPD 77
RGS ++++ +P+
Sbjct: 62 RGSHIKYLRLPE 73
>gi|344269970|ref|XP_003406820.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Loxodonta
africana]
Length = 133
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 19 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 78
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 79 IRYFILPDSLPLDTLLVDVEPKVKSK 104
>gi|361127598|gb|EHK99561.1| putative U6 snRNA-associated Sm-like protein LSm4 [Glarea
lozoyensis 74030]
Length = 115
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE G +V C+ N L+ + T+ DG K +L V++
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLVTCDTWMNLTLKEVVQTSPDGDKFYRLPEVYV 61
Query: 66 RGSKVR 71
+G+ R
Sbjct: 62 KGNNSR 67
>gi|336274282|ref|XP_003351895.1| hypothetical protein SMAC_00442 [Sordaria macrospora k-hell]
gi|380096178|emb|CCC06225.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 123
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + L N+ T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|168034120|ref|XP_001769561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679103|gb|EDQ65554.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVS-QLEHVFIRG 67
V+ L + + V++ELK+G + G++ + + N ++++ T K GKV L+H+ IRG
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHMKSVKLTLK-GKVPVALDHLSIRG 62
Query: 68 SKVRFMVIPDMLKNAPMFKRLDARIKGK 95
+ +R+ ++PD L + R+K K
Sbjct: 63 NNIRYYILPDSLNLDTLLVDDTPRVKSK 90
>gi|156336212|ref|XP_001619663.1| hypothetical protein NEMVEDRAFT_v1g223956 [Nematostella
vectensis]
gi|156203311|gb|EDO27563.1| predicted protein [Nematostella vectensis]
Length = 128
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 64 NIRYFILPESL 74
>gi|327287168|ref|XP_003228301.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Anolis
carolinensis]
Length = 123
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL +G V VEL+ L G + + N +L T+T + G+ SQLE +F+ G
Sbjct: 18 VLLLQGLTGRVTQVELRDESLAVGRVTNVDAFMNIRLGPTTFTDRTGRTSQLEDLFVAGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 SVRYVHIPD 86
>gi|121710142|ref|XP_001272687.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
gi|119400837|gb|EAW11261.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
Length = 123
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G+++ N L + T K L+ + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIISVSPQMNTALRTVKMTPKGRDPISLDTINVRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|409074771|gb|EKM75161.1| hypothetical protein AGABI1DRAFT_80275 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 122
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VTVELK+G L G++ + N L+ + T ++ + L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ +PD L
Sbjct: 64 NIRYFTLPDAL 74
>gi|209877859|ref|XP_002140371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209555977|gb|EEA06022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ ++ A+ H + VELK+GE Y G ++ + N L N+ T+KDG + ++ ++
Sbjct: 3 LPLSVIRSANKHSIMVELKNGETYSGMLIGVDGFMNLVLNNVISTSKDGQRFFRMSECYL 62
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ + D
Sbjct: 63 RGNNIKYIRMND 74
>gi|154337565|ref|XP_001565015.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062054|emb|CAM45146.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ L G +V +ELK+ + G + + N N + ++ T+K ++E +RGS
Sbjct: 14 ITFLQHLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHVKITSKGKNPVEVEEYMVRGS 73
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKG 94
+R++++P+ L + K+ A+ G
Sbjct: 74 TIRYIILPESLNTYDVLKQASAKKNG 99
>gi|389609361|dbj|BAM18292.1| small ribonucleoprotein particle protein SmD1 [Papilio xuthus]
Length = 125
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G++ + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYLLPDSL 74
>gi|401626033|gb|EJS44001.1| lsm4p [Saccharomyces arboricola H-6]
Length = 179
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENIT-----------YTAKD 54
+P+ LL A G + +ELK+GE+ +G++ DNW N L N+T A++
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGTLTNV-DNWMNLTLSNVTEYSGESAINSENNAEN 60
Query: 55 GKVSQLEHVFIRGSKVRFMVIPD 77
K +L +++RG+ ++F+ + D
Sbjct: 61 NKAVKLNEIYVRGTFIKFIKLQD 83
>gi|358420583|ref|XP_003584662.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Bos
taurus]
Length = 111
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+ + ++PD L + ++ ++K K
Sbjct: 64 NIWYFILPDSLPLDTLLVHVEPKVKSK 90
>gi|157822899|ref|NP_001102446.1| U7 snRNA-associated Sm-like protein LSm10 [Rattus norvegicus]
gi|149023943|gb|EDL80440.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023944|gb|EDL80441.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023945|gb|EDL80442.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|187469116|gb|AAI66902.1| Lsm10 protein [Rattus norvegicus]
Length = 122
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ LL G + TV+L+ + RG + + N +L N+TYT + G +L+ +F+ G
Sbjct: 18 IILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>gi|85112250|ref|XP_964309.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
gi|28926086|gb|EAA35073.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
Length = 123
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + L N+ T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|20270251|ref|NP_620046.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|253795523|ref|NP_001156738.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|52783143|sp|Q8QZX5.1|LSM10_MOUSE RecName: Full=U7 snRNA-associated Sm-like protein LSm10
gi|19354497|gb|AAH24543.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|20071449|gb|AAH26476.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|74228609|dbj|BAE25378.1| unnamed protein product [Mus musculus]
gi|148698363|gb|EDL30310.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
Length = 122
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ LL G + TV+L+ + RG + + N +L N+TYT + G +L+ +F+ G
Sbjct: 18 IILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>gi|149694668|ref|XP_001499097.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Equus
caballus]
Length = 123
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 11 LLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKV 70
LL G V TV+L+ + RG + + N +L N+TYT + G +L+ +F+ G V
Sbjct: 20 LLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNV 79
Query: 71 RFMVIPD 77
R++ IPD
Sbjct: 80 RYVHIPD 86
>gi|443713219|gb|ELU06184.1| hypothetical protein CAPTEDRAFT_162674 [Capitella teleta]
Length = 126
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G++ + + N L+++ T K+ QL+ + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTMVHGTITGVDVSMNTHLKSVKMTIKNRDPIQLDTLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYLLPDSL 74
>gi|119193324|ref|XP_001247268.1| hypothetical protein CIMG_01039 [Coccidioides immitis RS]
gi|258574579|ref|XP_002541471.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|303312169|ref|XP_003066096.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237901737|gb|EEP76138.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|240105758|gb|EER23951.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320040082|gb|EFW22016.1| small nuclear ribonucleoprotein SmD1 [Coccidioides posadasii str.
Silveira]
gi|392863489|gb|EAS35757.2| small nuclear ribonucleoprotein Sm D1 [Coccidioides immitis RS]
Length = 120
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K + L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGREPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|412985751|emb|CCO16951.1| predicted protein [Bathycoccus prasinos]
Length = 158
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
VK L + + VT+ELK+G G+++ + + N L+++ T K L+H+ IRG+
Sbjct: 40 VKFLQKLNNETVTIELKNGTTCSGTILGVDISMNTHLKSVKLTVKGRNPQTLDHLSIRGN 99
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 100 TIRYYILPESL 110
>gi|168068658|ref|XP_001786159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662031|gb|EDQ49029.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 111
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVS-QLEHVFIRGS 68
+ L + + V++ELK+G + G++ + + N L+++ T K GKV L+H+ IRG+
Sbjct: 1 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLK-GKVPVSLDHLSIRGN 59
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + R+K K
Sbjct: 60 NIRYYILPDSLNLDTLLVDDTPRVKAK 86
>gi|50309757|ref|XP_454891.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|15072878|emb|CAC48005.1| hypothetical protein [Kluyveromyces lactis]
gi|49644026|emb|CAG99978.1| KLLA0E20813p [Kluyveromyces lactis]
Length = 183
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQLEHVFI 65
+P+ LL A G + VELK+GE G++ + DNW N L N+T+ A G+ +L ++
Sbjct: 2 LPLYLLTNAKGQTMHVELKNGETVEGTLSDV-DNWMNLTLSNVTHVAS-GETLKLPSFYL 59
Query: 66 RGSKVRFMVIPD 77
+GS ++++ + D
Sbjct: 60 KGSFIKYVNLQD 71
>gi|124804217|ref|XP_001347937.1| small nuclear ribonucleoprotein D1, putative [Plasmodium falciparum
3D7]
gi|23496190|gb|AAN35850.1|AE014839_59 small nuclear ribonucleoprotein D1, putative [Plasmodium falciparum
3D7]
Length = 126
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 20/127 (15%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ--------- 59
V L + + VT+ELK+G L G + + N ++N+ K+ +++
Sbjct: 4 VHFLMKLTNENVTIELKNGTLITGIITAVDIKMNTHMKNVKVVIKNKNIAEYNVNTKQFL 63
Query: 60 -LEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGR 118
LEHV IRG+ +R+ ++ D L P LD+ + ++ + + ++ R K + G
Sbjct: 64 SLEHVTIRGNNIRYFILSDSL---P----LDSLLVEDTTPKKISKDKSFLHRDKGMSKG- 115
Query: 119 GAAPGRG 125
A GRG
Sbjct: 116 --AKGRG 120
>gi|71747374|ref|XP_822742.1| small nuclear ribonucleoprotein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832410|gb|EAN77914.1| small nuclear ribonucleoprotein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 131
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVE----CEDNWNCQLENITYTAKDGKVSQLEH 62
IP++ + EA+G +V VE G +Y G +++ C D +L ++ +D +S
Sbjct: 7 IPLRAICEATGFLVKVETTDGSVYDGKLMQLDAICGD---IELIDVRCQHRDSSLSVEGR 63
Query: 63 VFIRGSKVRFMVIPDMLKNAPM--FKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
VF++GS VR + +P LK AP +K L + + KSS KA+ G
Sbjct: 64 VFLKGSSVRLVHLPSDLKRAPFLDWKNLSIQKQLKSS-------------LKASKGGENK 110
Query: 121 APGRGVVPPVR 131
P R + P +
Sbjct: 111 WPKRTRMKPTK 121
>gi|395526532|ref|XP_003765416.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Sarcophilus
harrisii]
Length = 123
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TV+L+ + RG + + N +L +TYT + G+ QL+ +F+ G
Sbjct: 18 VILLQGLRGLVTTVDLRDETVARGRVDNVDAFMNIRLAEVTYTDRQGQQVQLDDLFVTGR 77
Query: 69 KVRFMVIPDMLK-NAPMFKRLDA--RIKGKSSSIGVGRGR 105
VR++ IPD + A + ++L A R++ S G+GR
Sbjct: 78 NVRYVHIPDEVDITATIEQQLQAIHRVRNFGSE---GKGR 114
>gi|342874370|gb|EGU76384.1| hypothetical protein FOXB_13062 [Fusarium oxysporum Fo5176]
Length = 123
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K + LE + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTIKGQEPISLETMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|146086705|ref|XP_001465619.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|157869411|ref|XP_001683257.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398015293|ref|XP_003860836.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68224141|emb|CAJ04478.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|134069718|emb|CAM68043.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|322499059|emb|CBZ34131.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 103
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
S + G + L + G +V +ELK+ + G + + N N + + T+K ++E
Sbjct: 7 SETGGTLITFLQQLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHAKITSKGKNPVEVE 66
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS 96
+RGS +R++++P+ L + K+ + G S
Sbjct: 67 EYMVRGSTIRYIIMPESLNTYDILKQASTKKNGAS 101
>gi|403356719|gb|EJY77960.1| hypothetical protein OXYTRI_00397 [Oxytricha trifallax]
Length = 187
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI-PDMLK 80
V+ K+GE Y G++++C+D N L+++ T G+ S+ E VFIRG+ V+ + + ++++
Sbjct: 2 VDTKNGESYDGTLLKCDDWMNLYLKDVIRTTTTGQFSKFEQVFIRGNHVKNIQLSEEIIE 61
Query: 81 N-APMFKRLDAR--IKGKSSSIGVGRG 104
N KR A I+G S G RG
Sbjct: 62 NYQAELKRRQAEKAIQGNFESEGKQRG 88
>gi|334329130|ref|XP_003341185.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Monodelphis domestica]
Length = 123
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TV+L+ + RG + + N +L +TYT + G+ QL+ +F+ G
Sbjct: 18 VILLQGLRGLVTTVDLRDETVARGRVDNVDAFMNIRLAEVTYTDRQGQQVQLDDLFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>gi|145243932|ref|XP_001394478.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus niger CBS
513.88]
gi|134079163|emb|CAK40691.1| unnamed protein product [Aspergillus niger]
gi|350631277|gb|EHA19648.1| hypothetical protein ASPNIDRAFT_47972 [Aspergillus niger ATCC
1015]
gi|358367165|dbj|GAA83784.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus kawachii IFO
4308]
Length = 121
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|67523297|ref|XP_659709.1| hypothetical protein AN2105.2 [Aspergillus nidulans FGSC A4]
gi|40745781|gb|EAA64937.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487477|tpe|CBF86187.1| TPA: small nuclear ribonucleoprotein SmD1, putative
(AFU_orthologue; AFUA_2G05110) [Aspergillus nidulans
FGSC A4]
Length = 121
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|355700134|gb|AES01351.1| LSM10, U7 small nuclear RNA associated [Mustela putorius furo]
Length = 122
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ LL G V TV+L+ + RG + + N +L N+TYT + G +L+ +F+ G
Sbjct: 18 IILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>gi|296473074|tpg|DAA15189.1| TPA: small nuclear ribonucleoprotein D1 polypeptide 16kDa-like
[Bos taurus]
Length = 119
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + N L+ + T K+ + QLE + IRG+
Sbjct: 5 RFLMKLSHETVTIELKNGTQVHGTITCVNVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 64
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 65 IRYFILPDSLPLDTLLVGVEPKVKSK 90
>gi|353238410|emb|CCA70357.1| probable small nuclear ribonucleoprotein SNRPD1 [Piriformospora
indica DSM 11827]
Length = 123
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + N L+ + TA++ L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVRLTARNRDPQPLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDAL 74
>gi|428180768|gb|EKX49634.1| hypothetical protein GUITHDRAFT_151418 [Guillardia theta
CCMP2712]
Length = 117
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++V + N L+ + T ++ LE + IRGS
Sbjct: 4 VRFLMKLNNETVTIELKNGSVVHGTIVGIDMAMNTHLKAVKLTMRNKTPVPLEQLSIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYLLPDNL 74
>gi|395329081|gb|EJF61470.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 112
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75
+ VTVELK+G + G++ + N L+ + TA++ + + L+ + IRG+ +R+ V+
Sbjct: 4 NNETVTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGNNIRYFVL 63
Query: 76 PDML 79
PD L
Sbjct: 64 PDAL 67
>gi|57096594|ref|XP_532561.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Canis lupus
familiaris]
Length = 123
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 11 LLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKV 70
LL G V TV+L+ + RG + + N +L N+TYT + G +L+ +F+ G V
Sbjct: 20 LLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNV 79
Query: 71 RFMVIPD 77
R++ IPD
Sbjct: 80 RYVHIPD 86
>gi|291401386|ref|XP_002717263.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like [Oryctolagus cuniculus]
Length = 144
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 29 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 88
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+ + ++PD L + ++ ++K K
Sbjct: 89 NICYFILPDSLPLDTLLVDVEPKVKSK 115
>gi|169770091|ref|XP_001819515.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus oryzae RIB40]
gi|238487546|ref|XP_002375011.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|83767374|dbj|BAE57513.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699890|gb|EED56229.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|391864024|gb|EIT73322.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 123
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|295673314|ref|XP_002797203.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225681042|gb|EEH19326.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb03]
gi|226282575|gb|EEH38141.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226292265|gb|EEH47685.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb18]
Length = 121
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTTKGRDPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|389632099|ref|XP_003713702.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|351646035|gb|EHA53895.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|440473990|gb|ELQ42759.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae Y34]
gi|440485032|gb|ELQ65031.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae P131]
Length = 125
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L N+ T + L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|443711594|gb|ELU05300.1| hypothetical protein CAPTEDRAFT_181174 [Capitella teleta]
Length = 144
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT-AKDGKVSQLEH 62
SL + LL G T+EL++ + G++ + N L IT+T AK G+ SQL+
Sbjct: 12 SLNTLLCLLQGCVGRCTTIELRNDDSILGTIDHVDIQMNVFLSTITFTRAKTGQQSQLDK 71
Query: 63 VFIRGSKVRFMVIPD 77
++++G +R++ IPD
Sbjct: 72 LYVQGKNIRYVHIPD 86
>gi|401413718|ref|XP_003886306.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
gi|325120726|emb|CBZ56281.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
Length = 98
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A + VELKSGE Y G + C+ N L++ T+KDG + +L +I
Sbjct: 3 LPLTLLRAAQNRPMMVELKSGETYSGLLANCDGFMNLHLKDSVCTSKDGERFWKLTECYI 62
Query: 66 RGSKVRFM 73
RG+ V+++
Sbjct: 63 RGNMVKYI 70
>gi|67615310|ref|XP_667428.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis
TU502]
gi|54658569|gb|EAL37203.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis]
Length = 126
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
++ L + + V +ELK+G + +G++V + + N L+N+ + K L + +RG+
Sbjct: 4 IRFLMKLINNSVVIELKNGTIIQGTIVSVDMSMNTYLKNVKMSVKHRNPVSLSQITVRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|432882999|ref|XP_004074183.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 1
[Oryzias latipes]
gi|432883001|ref|XP_004074184.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 2
[Oryzias latipes]
Length = 134
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TV+L+ RG ++ + N +L+++ + + G+ +QL+ +FI G
Sbjct: 30 VVLLQGLQGEVTTVDLRDESSARGLVLNVDAFMNIRLKDVLFLDRRGQTAQLQDLFITGR 89
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGR 105
VR++ IPD + + A+I + G G GR
Sbjct: 90 NVRYVHIPDHVDIMKTMESQLAKIHRVRNFAGEGGGR 126
>gi|261195138|ref|XP_002623973.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239587845|gb|EEQ70488.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239610667|gb|EEQ87654.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|344299688|gb|EGW30041.1| hypothetical protein SPAPADRAFT_57515 [Spathaspora passalidarum
NRRL Y-27907]
Length = 140
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A V +ELK+GE Y+G +V + N L N+ +T + S+ V+I
Sbjct: 2 LPLYLLTAAKNKPVLIELKTGETYQGDLVNLDPWMNLTLSNVIHTNTGADEFSKETEVYI 61
Query: 66 RGSKVRFMVIPD 77
RG ++++ IPD
Sbjct: 62 RGMHIKYLRIPD 73
>gi|260819208|ref|XP_002604929.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
gi|229290258|gb|EEN60939.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
Length = 121
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VTVELK+G G++ + + N L+ + T K+ + QL+ + IRG+
Sbjct: 4 VRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTIKNREPVQLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|449273124|gb|EMC82732.1| U7 snRNA-associated Sm-like protein LSm10 [Columba livia]
Length = 123
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TV+L+ G + + N +L +TYT + G VS L+ +F+ G
Sbjct: 18 VILLQGLRGLVTTVDLRDESTATGRVTNVDAFMNVRLAEVTYTDRQGAVSHLDELFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>gi|115399152|ref|XP_001215165.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
gi|114192048|gb|EAU33748.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
Length = 121
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|168013855|ref|XP_001759481.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689411|gb|EDQ75783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVS-QLEHVFIRG 67
V+ L + + V++ELK+G + G++ + + N L+++ T K GKV L+H+ +RG
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLK-GKVPVALDHLSVRG 62
Query: 68 SKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+ +R+ ++PD L + R+K K G
Sbjct: 63 NNIRYYILPDSLNLDTLLVDDTPRVKVKKPVAG 95
>gi|401422144|ref|XP_003875560.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491798|emb|CBZ27071.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 103
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%)
Query: 2 SRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLE 61
S + G + L + G +V +ELK+ + G + + N N + + T+K ++E
Sbjct: 7 SETGGTLITFLQQLRGTLVEIELKNASIVSGEISYVDANMNTYMSHAKITSKGKNPVEVE 66
Query: 62 HVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKS 96
+RGS +R++++P+ L + K+ + G S
Sbjct: 67 EYMVRGSTIRYIIMPESLNTYDILKQASTKKNGTS 101
>gi|300122633|emb|CBK23201.2| unnamed protein product [Blastocystis hominis]
Length = 152
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQ 59
+RS+ +P+ LL A + + VEL +GE Y G +V C+ N L + T K G +
Sbjct: 14 FTRSM-LPLSLLRAARDNEILVELTNGETYNGKLVSCDSYMNLVLNDAILTTKTGSRFFH 72
Query: 60 LEHVFIRGSKVRFMVIP-DMLKNAP 83
L +IRG+ V+ + + D++ N P
Sbjct: 73 LSECYIRGATVKCIRLSKDVINNVP 97
>gi|315050300|ref|XP_003174524.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|327303162|ref|XP_003236273.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|311339839|gb|EFQ99041.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|326461615|gb|EGD87068.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|326471350|gb|EGD95359.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton tonsurans CBS
112818]
Length = 125
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDPISLDSINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|296813285|ref|XP_002846980.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
gi|238842236|gb|EEQ31898.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
Length = 125
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDPISLDSINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|126133080|ref|XP_001383065.1| hypothetical protein PICST_54497 [Scheffersomyces stipitis CBS
6054]
gi|126094890|gb|ABN65036.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 147
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVS-QLEHVFI 65
+P+ LL A + +ELK+GE G +V C+ N L+++ T+ +G+ ++ V+I
Sbjct: 2 LPLYLLTAAKTKQILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +P+
Sbjct: 62 RGNHIKYLRLPE 73
>gi|440640424|gb|ELR10343.1| hypothetical protein GMDG_04725 [Geomyces destructans 20631-21]
Length = 139
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + TA+ L+ + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTARGRDPVALDTINLRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|344230588|gb|EGV62473.1| hypothetical protein CANTEDRAFT_109388 [Candida tenuis ATCC 10573]
Length = 114
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 15 ASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMV 74
++ H VTVELK+G G ++ C N L+NI L ++ IRG+++R ++
Sbjct: 13 STSHPVTVELKNGNSVNGQVLSCSPTMNLALKNIKLIQPHQDAQFLNYMNIRGNQIRQVL 72
Query: 75 IPDMLKNAPMFKRLDARIKGKSSSIGVGRG 104
+P+ L + + K K +S V +G
Sbjct: 73 LPEDLNLDAVLAKCVQNTKSKGTSGSVSKG 102
>gi|146322817|ref|XP_749642.2| small nuclear ribonucleoprotein SmD1 [Aspergillus fumigatus
Af293]
gi|129556817|gb|EAL87604.2| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus Af293]
gi|159129049|gb|EDP54163.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus A1163]
Length = 120
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|119480211|ref|XP_001260134.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
gi|119408288|gb|EAW18237.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
Length = 121
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|66357964|ref|XP_626160.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
gi|46227255|gb|EAK88205.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
Length = 137
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
++ L + + V +ELK+G + +G++V + + N L+N+ + K L + +RG+
Sbjct: 15 IRFLMKLVNNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKMSVKHRNPVSLSQITVRGN 74
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 75 TIRYFILPDSL 85
>gi|327277806|ref|XP_003223654.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like, partial
[Anolis carolinensis]
Length = 94
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S +T+ELK+G G++ + + N L+ + T K+ + QLE + IR +
Sbjct: 4 VRFLMKLSHETITIELKNGTQVHGTITGVDVSMNTYLKAVKMTLKNREPIQLETLSIRSN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>gi|358378050|gb|EHK15733.1| hypothetical protein TRIVIDRAFT_64379 [Trichoderma virens Gv29-8]
Length = 120
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + TA+ L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTISSVTPQMNVALRTVKMTARGQDSIALDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|261332520|emb|CBH15515.1| small nuclear ribonucleoprotein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 131
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 18/129 (13%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVE----CEDNWNCQLENITYTAKDGKVSQLEH 62
IP++ + EA+G +V VE G +Y G +++ C D +L ++ +D +S
Sbjct: 7 IPLRAICEATGFLVKVETTDGSVYDGKLMQLDAICGD---IELIDVRCQHRDSSLSVEGR 63
Query: 63 VFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAP 122
VF++GS VR + +P LK AP LD R + + + KA+ G P
Sbjct: 64 VFLKGSSVRLVHLPSDLKRAPF---LDWR--------NLSIQKQLKSSLKASKGGENKWP 112
Query: 123 GRGVVPPVR 131
R P +
Sbjct: 113 KRTRTKPTK 121
>gi|242764900|ref|XP_002340864.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218724060|gb|EED23477.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 124
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VT+ELK+G + G++ N L + T K + L+ + IRGS
Sbjct: 4 VRFLMKCMNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTINIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|114050791|ref|NP_001040404.1| small nuclear ribonucleoprotein Sm D1 [Bombyx mori]
gi|95102768|gb|ABF51325.1| small nuclear ribonucleoprotein Sm D1 [Bombyx mori]
Length = 126
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G + G++ + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYLLPDSL 74
>gi|448087362|ref|XP_004196309.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359377731|emb|CCE86114.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 9 VKLLHEASGHV---VTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
V+ L S + VT+ELK+G G ++ C + N ++N+ L+++ I
Sbjct: 4 VRFLMNFSNYTSQPVTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYMNI 63
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGRG 125
RG+++R +++PD L + + IKG+ + G + + A GR RG
Sbjct: 64 RGNQIRLVILPDDLNIDSVLAKSAVTIKGQGAGPGSQNTNGIGSK---GALGRNKGAPRG 120
>gi|302770463|ref|XP_002968650.1| hypothetical protein SELMODRAFT_145785 [Selaginella moellendorffii]
gi|302816441|ref|XP_002989899.1| hypothetical protein SELMODRAFT_235902 [Selaginella moellendorffii]
gi|300142210|gb|EFJ08912.1| hypothetical protein SELMODRAFT_235902 [Selaginella moellendorffii]
gi|300163155|gb|EFJ29766.1| hypothetical protein SELMODRAFT_145785 [Selaginella moellendorffii]
Length = 114
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + K ++H+ IRG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVNGTITGVDISMNTHLKAVKLVLKGKNPVTMDHLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K + G
Sbjct: 64 NIRYYILPDSLNLETLLVDDTPRVKQKKPAAG 95
>gi|344303431|gb|EGW33680.1| hypothetical protein SPAPADRAFT_59049 [Spathaspora passalidarum
NRRL Y-27907]
Length = 123
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 12 LHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVR 71
+ ++ +TVELK+G G+++ C + N L+N+ + L+ + IRG+++R
Sbjct: 10 IPNSTNQPLTVELKNGTTINGTLMSCSPSMNLSLKNVKLQQPLQDATLLQFINIRGNQIR 69
Query: 72 FMVIPDML 79
+++PD L
Sbjct: 70 QILLPDEL 77
>gi|83272157|gb|ABC00745.1| putative small nuclear ribonucleoprotein D1 [Brassica napus]
Length = 118
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + T K ++H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSLRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRLKPKKPVAG 95
>gi|396487975|ref|XP_003842766.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
gi|312219343|emb|CBX99287.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
Length = 114
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELKSGE G ++ C+ N L + T+ DG K +L +++RGS ++++ +PD
Sbjct: 3 VELKSGETLNGLLINCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPD 59
>gi|170095247|ref|XP_001878844.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
gi|164646148|gb|EDR10394.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
Length = 127
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + N L+ + T ++ + L+ + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGCIVHGTITGVDMQMNTHLKTVKMTMRNRDPTTLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
VR+ V+PD L
Sbjct: 64 TVRYFVLPDAL 74
>gi|320592072|gb|EFX04511.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 348
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + + VT+ELK+G + G++ N L N+ T K L+ + +RGS
Sbjct: 221 RFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPKGQDPVPLDTINLRGST 280
Query: 70 VRFMVIPDML 79
+R+ ++PD L
Sbjct: 281 IRYFILPDSL 290
>gi|320168484|gb|EFW45383.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 131
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L V VELK+G + +G++V + N L N+ T K+ LE + IRG+
Sbjct: 4 VRFLMRLVSETVIVELKNGTVVQGTIVGVDHLMNTMLRNVKLTVKNKDPVSLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSS 97
+R ++PD L P+ L + KS+
Sbjct: 64 NIRHYILPDSL---PLDSLLIEEVPKKST 89
>gi|340513813|gb|EGR44094.1| predicted protein [Trichoderma reesei QM6a]
Length = 120
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + TA+ L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIAHGTISSVTPQMNVALRTVKMTARGQDSIALDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|405118247|gb|AFR93021.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii
H99]
Length = 129
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ----LEHVF 64
V+ L + + VT+ELK+G + G++ + N L+++ T + SQ L+ +
Sbjct: 4 VRFLMKLNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIA 63
Query: 65 IRGSKVRFMVIPDML 79
IRG+ +R+ ++PD L
Sbjct: 64 IRGNNIRYFILPDSL 78
>gi|209875591|ref|XP_002139238.1| small nuclear ribonucleoprotein Sm D1 [Cryptosporidium muris
RN66]
gi|209554844|gb|EEA04889.1| small nuclear ribonucleoprotein Sm D1, putative [Cryptosporidium
muris RN66]
Length = 114
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V +ELK+G + +G++V + N L+N+ + K L + +RGS
Sbjct: 4 VRFLMKLVNNSVVIELKNGTIVQGTIVNVDMAMNTYLKNVKMSVKQRNPISLLQLTVRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|340504873|gb|EGR31279.1| small nuclear ribonucleoprotein sm d1, putative [Ichthyophthirius
multifiliis]
Length = 110
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VT+ELK+G GS++ + N L + T K L+H+ IRG+
Sbjct: 4 VRFLMKLKNQTVTIELKNGTQITGSIIGVDIRMNTHLSKVKLTIKGKNPVSLDHLTIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 64 NIRYFLLPEAL 74
>gi|221125651|ref|XP_002163302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Hydra
magnipapillata]
Length = 128
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VTVELK+G + G++ + + N L+ + T K QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTVELKNGTVAHGTITGVDMSMNTHLKAVKMTLKGKDPVQLETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 64 NIRYFILPESL 74
>gi|426195101|gb|EKV45031.1| hypothetical protein AGABI2DRAFT_73218, partial [Agaricus
bisporus var. bisporus H97]
Length = 118
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + + VTVELK+G L G++ + N L+ + T ++ + L+ + IRG+
Sbjct: 1 RFLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLDSLSIRGNN 60
Query: 70 VRFMVIPDML 79
+R+ +PD L
Sbjct: 61 IRYFTLPDAL 70
>gi|354477407|ref|XP_003500912.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Cricetulus griseus]
gi|344245005|gb|EGW01109.1| U7 snRNA-associated Sm-like protein LSm10 [Cricetulus griseus]
Length = 122
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G + TV+L+ RG + + N +L N+TYT + G +L+ +F+ G
Sbjct: 18 VILLQGLQGQITTVDLRDESSARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>gi|66816135|ref|XP_642077.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|60470206|gb|EAL68186.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 131
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VT+ELK+G + +GS+ + + N L+ + T K L+ + IRG+
Sbjct: 4 VRFLMKLHNETVTIELKNGTIVQGSVAGVDVSMNTHLKTVKLTLKGKNPVNLDTLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGR 105
+R+ ++P+ L + ++K K ++ G +
Sbjct: 64 NIRYFILPESLNLGTLLVDDTPKVKAKKTTSKPGESK 100
>gi|429859869|gb|ELA34627.1| small nuclear ribonucleoprotein sm d1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 177
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 59 VRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNIRGS 118
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 119 TIRYFILPDSL 129
>gi|301779577|ref|XP_002925209.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Ailuropoda melanoleuca]
gi|281344415|gb|EFB19999.1| hypothetical protein PANDA_014655 [Ailuropoda melanoleuca]
Length = 123
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 11 LLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKV 70
LL G V TV+L+ + RG + + N +L N+TYT + G L+ +F+ G V
Sbjct: 20 LLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHRVALDDLFVTGRNV 79
Query: 71 RFMVIPDMLKNAPMFKR 87
R++ IPD + +R
Sbjct: 80 RYVHIPDDVNITATIER 96
>gi|363808094|ref|NP_001242473.1| uncharacterized protein LOC100786834 [Glycine max]
gi|255645080|gb|ACU23039.1| unknown [Glycine max]
Length = 138
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 22 VELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE Y G +V C D W N L + T+KDG + ++ +IRG+ ++++ +PD
Sbjct: 3 VELKNGETYNGHLVNC-DTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 59
>gi|255712429|ref|XP_002552497.1| KLTH0C06248p [Lachancea thermotolerans]
gi|238933876|emb|CAR22059.1| KLTH0C06248p [Lachancea thermotolerans CBS 6340]
Length = 175
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQLEHVFI 65
+P+ LL A G + +ELK+GE G + DNW N L ++T+T+ V +L +++
Sbjct: 2 LPLYLLTNAKGQQLVIELKNGETIVGQLTNV-DNWMNLTLTDVTHTSASDTV-KLSEIYV 59
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ + D
Sbjct: 60 RGNFIKYIKLQD 71
>gi|440492904|gb|ELQ75435.1| Small nuclear ribonucleoprotein (snRNP) [Trachipleistophora
hominis]
Length = 91
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRG 67
PV L+ + G V+ VELK+ + YRG++V C+ N +L+N+ + DG+ +RG
Sbjct: 3 PVTLVRISKGSVIDVELKNNDTYRGTLVACDLLMNLRLKNVRLVSSDGE-KDFNECILRG 61
Query: 68 SKVR 71
S V+
Sbjct: 62 SAVK 65
>gi|331241854|ref|XP_003333574.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312564|gb|EFP89155.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 122
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
++ L + + VT+ELK+G + G++ + N L+ + T ++ + QL+ + IRGS
Sbjct: 4 IRFLMKLNQETVTIELKNGTVVHGTISGVDVAMNTHLKAVKMTVRNREPVQLDSLSIRGS 63
Query: 69 KVRFMVIPDML 79
VR++++PD L
Sbjct: 64 NVRYIILPDSL 74
>gi|356499685|ref|XP_003518667.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Glycine max]
Length = 126
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNW----------NCQLENITYTAKDGKVS 58
V+ L + + V++ELK+G + G++ + W N L+ + T K
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITDKLTQWALDDGVDISMNTHLKTVKLTLKGKNPV 63
Query: 59 QLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
L+H+ +RG+ +R+ ++PD L + +IK K + G
Sbjct: 64 TLDHLSVRGNNIRYYILPDSLNLETLLVEETPKIKPKKPTAG 105
>gi|15231485|ref|NP_187416.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
gi|334185166|ref|NP_001189837.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
gi|6466942|gb|AAF13077.1|AC009176_4 putative small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis
thaliana]
gi|17978995|gb|AAL47458.1| AT3g07590/MLP3_4 [Arabidopsis thaliana]
gi|21593161|gb|AAM65110.1| putative small nuclear ribonucleoprotein Sm-D1 [Arabidopsis
thaliana]
gi|21700847|gb|AAM70547.1| AT3g07590/MLP3_4 [Arabidopsis thaliana]
gi|332641049|gb|AEE74570.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
gi|332641050|gb|AEE74571.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
Length = 114
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + + K L+H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95
>gi|260790675|ref|XP_002590367.1| hypothetical protein BRAFLDRAFT_76640 [Branchiostoma floridae]
gi|229275559|gb|EEN46378.1| hypothetical protein BRAFLDRAFT_76640 [Branchiostoma floridae]
Length = 130
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S V LL GH TVEL+ G +V + N ++ TYT GK Q +
Sbjct: 10 SQNTLVCLLQAIQGHETTVELRDEASVFGLIVNVDAFMNTTMKYCTYTDHRGKTMQFDDF 69
Query: 64 FIRGSKVRFMVIPD 77
+++G +RF+ IPD
Sbjct: 70 YVQGRNIRFVQIPD 83
>gi|330946004|ref|XP_003306672.1| hypothetical protein PTT_19864 [Pyrenophora teres f. teres 0-1]
gi|311315722|gb|EFQ85223.1| hypothetical protein PTT_19864 [Pyrenophora teres f. teres 0-1]
Length = 90
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELKSGE G +V C+ N L + T+ DG K +L +++RGS ++++ +PD
Sbjct: 3 VELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPD 59
>gi|328770984|gb|EGF81025.1| hypothetical protein BATDEDRAFT_11263 [Batrachochytrium
dendrobatidis JAM81]
Length = 124
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + VT+ELK+G G++ + N L+ + T K+ LE + IRG+
Sbjct: 8 RFLMKCWNETVTIELKNGTTINGTITGVDMQMNTHLKTVKMTVKNKDPVHLETLSIRGNT 67
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGKSS-SIGVGRG 104
+R+ ++PD L + +D R K K+S +G +G
Sbjct: 68 IRYFILPDALPLDTLL--IDDRPKLKASKKVGDSKG 101
>gi|422295210|gb|EKU22509.1| small nuclear ribonucleoprotein D1, partial [Nannochloropsis
gaditana CCMP526]
Length = 108
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G +G++ + + N L+N+ T K E + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDAL 74
>gi|151944828|gb|EDN63087.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 187
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENIT-YT----------AKD 54
+P+ LL A G + +ELK+GE+ +G + DNW N L N+T Y+ A+
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNV-DNWMNLTLSNVTEYSEESAINSENNAES 60
Query: 55 GKVSQLEHVFIRGSKVRFMVIPD 77
K +L ++IRG+ ++F+ + D
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQD 83
>gi|47212040|emb|CAF92642.1| unnamed protein product [Tetraodon nigroviridis]
Length = 115
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V LL G V TV+L++ RG +V + N +LE + Y + G+++ ++ +F+ G
Sbjct: 13 VVLLQGLQGEVTTVDLRNECTARGRIVSVDAFMNMRLEAVLYRDRRGQLANMQDLFVTGR 72
Query: 69 KVRFMVIP---DMLKNAPM 84
VR++ +P DM+K M
Sbjct: 73 NVRYVHVPDHVDMMKTIEM 91
>gi|56757319|gb|AAW26831.1| SJCHGC01415 protein [Schistosoma japonicum]
gi|226468936|emb|CAX76496.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 127
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G GS+ + + N + ++T T K+ L+ + +RG+
Sbjct: 6 VRFLMKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGN 65
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 66 NIRYFILPESL 76
>gi|226468938|emb|CAX76497.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468940|emb|CAX76498.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468942|emb|CAX76499.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468944|emb|CAX76500.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472890|emb|CAX71131.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472892|emb|CAX71132.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 125
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G GS+ + + N + ++T T K+ L+ + +RG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 64 NIRYFILPESL 74
>gi|170064026|ref|XP_001867355.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
gi|167881462|gb|EDS44845.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
Length = 126
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+ + T K+ QL+ + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|358339785|dbj|GAA47780.1| small nuclear ribonucleoprotein D1 [Clonorchis sinensis]
Length = 124
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G GS+ + + N L ++T T K+ + L+ + +RG+
Sbjct: 4 VRFLMKLSHETVTMELKNGTQVHGSIAGVDVSMNTHLRSVTVTLKNRESMNLDTLTVRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 64 NIRYFILPESL 74
>gi|365761122|gb|EHN02798.1| Lsm4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 177
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVS------- 58
+P+ LL A G + +ELK+GE+ +G++ DNW N L N+T +++ +
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGTLTNV-DNWMNLTLSNVTEYSEENAIDSENNADK 60
Query: 59 ----QLEHVFIRGSKVRFMVIPD 77
+L +++RG+ ++F+ + D
Sbjct: 61 SKAIKLNEIYVRGTFIKFIKLQD 83
>gi|605651|gb|AAA58257.1| regulatory protein [Saccharomyces cerevisiae]
gi|190405674|gb|EDV08941.1| U6 snRNA associated protein [Saccharomyces cerevisiae RM11-1a]
gi|207345878|gb|EDZ72558.1| YER112Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271267|gb|EEU06342.1| Lsm4p [Saccharomyces cerevisiae JAY291]
gi|323309425|gb|EGA62642.1| Lsm4p [Saccharomyces cerevisiae FostersO]
gi|323333783|gb|EGA75174.1| Lsm4p [Saccharomyces cerevisiae AWRI796]
gi|323355304|gb|EGA87129.1| Lsm4p [Saccharomyces cerevisiae VL3]
gi|349577787|dbj|GAA22955.1| K7_Lsm4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299814|gb|EIW10906.1| Lsm4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 187
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENIT-YT----------AKD 54
+P+ LL A G + +ELK+GE+ +G + DNW N L N+T Y+ A+
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNV-DNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 55 GKVSQLEHVFIRGSKVRFMVIPD 77
K +L ++IRG+ ++F+ + D
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQD 83
>gi|398364697|ref|NP_011037.3| Lsm4p [Saccharomyces cerevisiae S288c]
gi|731503|sp|P40070.1|LSM4_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|603351|gb|AAC03210.1| Uss1p: core protein of small nuclear ribonucleoprotein
[Saccharomyces cerevisiae]
gi|695736|emb|CAA57975.1| USS1 [Saccharomyces cerevisiae]
gi|285811744|tpg|DAA07772.1| TPA: Lsm4p [Saccharomyces cerevisiae S288c]
Length = 187
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENIT-YT----------AKD 54
+P+ LL A G + +ELK+GE+ +G + DNW N L N+T Y+ A+
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNV-DNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 55 GKVSQLEHVFIRGSKVRFMVIPD 77
K +L ++IRG+ ++F+ + D
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQD 83
>gi|323337992|gb|EGA79231.1| Lsm4p [Saccharomyces cerevisiae Vin13]
Length = 187
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENIT-YT----------AKD 54
+P+ LL A G + +ELK+GE+ +G + DNW N L N+T Y+ A+
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNV-DNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 55 GKVSQLEHVFIRGSKVRFMVIPD 77
K +L ++IRG+ ++F+ + D
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQD 83
>gi|157105264|ref|XP_001648790.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|157118312|ref|XP_001653165.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|108880134|gb|EAT44359.1| AAEL004263-PA [Aedes aegypti]
gi|108883288|gb|EAT47513.1| AAEL001382-PA [Aedes aegypti]
Length = 126
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+ + T K+ QL+ + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|323305273|gb|EGA59020.1| Lsm4p [Saccharomyces cerevisiae FostersB]
Length = 187
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENIT-YT----------AKD 54
+P+ LL A G + +ELK+GE+ +G + DNW N L N+T Y+ A+
Sbjct: 2 LPLYLLTNAXGQQMQIELKNGEIIQGILTNV-DNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 55 GKVSQLEHVFIRGSKVRFMVIPD 77
K +L ++IRG+ ++F+ + D
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQD 83
>gi|195019728|ref|XP_001985042.1| GH14721 [Drosophila grimshawi]
gi|193898524|gb|EDV97390.1| GH14721 [Drosophila grimshawi]
Length = 124
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VTVELK+G G++ + N L+++ T K+ LE + IRG+
Sbjct: 4 VRFLMKLSHETVTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVHLESLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|242216937|ref|XP_002474272.1| predicted protein [Postia placenta Mad-698-R]
gi|220726564|gb|EED80509.1| predicted protein [Postia placenta Mad-698-R]
Length = 121
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + N L+ + TA++ + E + IRG+
Sbjct: 4 VRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKLTARNREPMAHETLTIRGN 63
Query: 69 KVRFMVIPD 77
+R+ V+PD
Sbjct: 64 TIRYFVLPD 72
>gi|50413178|ref|XP_457218.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
gi|49652883|emb|CAG85213.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
Length = 165
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVS-QLEHVFI 65
+P+ LL A + VELK+GE G +V C+ N L+++ ++ +G+ +L +I
Sbjct: 2 LPLYLLTSAKNQPILVELKNGESLNGQLVNCDSWMNLTLKDVIQSSSNGETFVKLPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +P+
Sbjct: 62 RGNHIKYLRLPE 73
>gi|428164901|gb|EKX33911.1| hypothetical protein GUITHDRAFT_98209 [Guillardia theta CCMP2712]
Length = 125
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE Y G +V C+ N L ++ T++DG K ++ +IRG+ ++++ +PD
Sbjct: 3 VELKNGETYNGILVNCDIWMNLSLRDVVCTSRDGDKFWKIPECYIRGNNIKYLRVPD 59
>gi|195126373|ref|XP_002007645.1| GI12268 [Drosophila mojavensis]
gi|193919254|gb|EDW18121.1| GI12268 [Drosophila mojavensis]
Length = 124
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VTVELK+G G++ + N L+++ T K+ LE + IRG+
Sbjct: 4 VRFLMKLSHETVTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVHLESLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|307198074|gb|EFN79127.1| Probable small nuclear ribonucleoprotein Sm D1 [Harpegnathos
saltator]
Length = 123
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+ + T K+ QLE + +RG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVNGTITGVDVAMNTHLKTVKMTIKNRDPVQLETLSLRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|378731678|gb|EHY58137.1| small nuclear ribonucleoprotein D1 [Exophiala dermatitidis
NIH/UT8656]
Length = 130
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKD-------GKVSQLEH 62
+ L + + VT+ELK+G + G++ N L + T K+ G+ L+
Sbjct: 4 RFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRAVKMTTKNRSSPSAPGETISLDT 63
Query: 63 VFIRGSKVRFMVIPDML 79
+ IRGS +R+ ++PD L
Sbjct: 64 INIRGSTIRYFILPDSL 80
>gi|361128927|gb|EHL00852.1| putative Small nuclear ribonucleoprotein Sm D1 [Glarea lozoyensis
74030]
Length = 132
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T + L+ + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPIALDTINLRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|198464926|ref|XP_001353417.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
gi|198149939|gb|EAL30924.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
Length = 125
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+++ T K+ LE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLESLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|149235059|ref|XP_001523408.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452817|gb|EDK47073.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 125
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%)
Query: 14 EASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFM 73
++ +TVELK+G + G+++ N L+N+ L+++ IRG+++R +
Sbjct: 12 NSTNQPITVELKNGNIVNGTLLSANPQMNLNLKNVKLQQLYQDPILLQYINIRGNQIRQI 71
Query: 74 VIPDMLKNAPMFKRLDARIKGK 95
++PD L + ++ +IKG+
Sbjct: 72 LLPDDLNIDGVLEKSQTKIKGQ 93
>gi|226468934|emb|CAX76495.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 101
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G GS+ + + N + ++T T K+ L+ + +RG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 64 NIRYFILPESL 74
>gi|145549786|ref|XP_001460572.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428402|emb|CAK93175.1| unnamed protein product [Paramecium tetraurelia]
Length = 128
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ-LEHVFI 65
P+ LL A G V +E+K+G+ Y G + + N +L N+ +T+KDG ++ + I
Sbjct: 5 FPLSLLLTAKGSDVVIEVKAGDTYDGKLELLDKFMNAKLTNVKHTSKDGNSFHGIKELLI 64
Query: 66 RGSKVR-FMVIPDMLKNA 82
+G+ ++ F + PD K A
Sbjct: 65 KGNSIKYFRLNPDAEKKA 82
>gi|397630129|gb|EJK69651.1| hypothetical protein THAOC_09069 [Thalassiosira oceanica]
Length = 116
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 32/42 (76%)
Query: 48 ITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLD 89
+ + K G+ +E +++RGS++ F+V+P+ML++APMF+R+
Sbjct: 10 VVHGPKQGEKRNVEQMYVRGSEITFIVLPEMLRHAPMFQRIH 51
>gi|242022404|ref|XP_002431630.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
gi|212516938|gb|EEB18892.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
Length = 122
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+ + T K+ + LE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNKEPVMLETLTIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|302692404|ref|XP_003035881.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
gi|300109577|gb|EFJ00979.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
Length = 121
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + N L+ + T ++ + L+ + +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPTHLDSLSLRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDAL 74
>gi|301090235|ref|XP_002895342.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
gi|262100456|gb|EEY58508.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
Length = 105
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75
S VT+ELK+G L G++ + + N L+ + T K L+ + IRG+ +R+ ++
Sbjct: 4 SNETVTIELKNGTLVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYIL 63
Query: 76 PDMLK 80
PD L
Sbjct: 64 PDSLN 68
>gi|296089996|emb|CBI39815.3| unnamed protein product [Vitis vinifera]
Length = 107
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75
+ V++ELK+G + G++ + + N L+ + T K ++H+ +RG+ +R+ ++
Sbjct: 4 NNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSVRGNNIRYYIL 63
Query: 76 PDMLKNAPMFKRLDARIKGKSSSIG 100
PD + + R+K K + G
Sbjct: 64 PDSINLETLLVEETPRVKPKKPTAG 88
>gi|322693984|gb|EFY85827.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium acridum CQMa
102]
gi|322708999|gb|EFZ00576.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium anisopliae
ARSEF 23]
Length = 121
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T + L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTPRGQDPISLDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|342319983|gb|EGU11928.1| RING finger domain-containing protein [Rhodotorula glutinis ATCC
204091]
Length = 885
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + + VT+ELK+G G++ + + N L+ + T + + L+ + IRG+
Sbjct: 129 RFLMKLNNETVTIELKNGTSVHGTITGVDPSMNTHLKKVKMTVRGREPQALDSLAIRGNN 188
Query: 70 VRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGRGVVPP 129
VR+ ++PD L LD + + +G + R G +P RG V
Sbjct: 189 VRYFILPDSLP-------LDTLLIDDAPKPKKKKGEVRSARLAPLRRGGPGSPQRGDVDG 241
Query: 130 VR 131
VR
Sbjct: 242 VR 243
>gi|302411190|ref|XP_003003428.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
gi|261357333|gb|EEY19761.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
Length = 121
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPVALDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|126345432|ref|XP_001373339.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Monodelphis domestica]
Length = 124
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 14/84 (16%)
Query: 22 VELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDML 79
VELK+GE Y G +V C DNW N L + T++DG K ++ +IRGS ++++ IPD +
Sbjct: 2 VELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI 60
Query: 80 KNAPMFKRLDARIKGKSSSIGVGR 103
+ K + GR
Sbjct: 61 IDMV-----------KEEVVSKGR 73
>gi|17864386|ref|NP_524774.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|194747611|ref|XP_001956245.1| GF25112 [Drosophila ananassae]
gi|195327205|ref|XP_002030312.1| GM24635 [Drosophila sechellia]
gi|195493908|ref|XP_002094615.1| GE20102 [Drosophila yakuba]
gi|195589894|ref|XP_002084684.1| GD12704 [Drosophila simulans]
gi|33112453|sp|Q9VU02.1|SMD1_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D1;
Short=Sm-D1; AltName: Full=snRNP core protein D1
gi|7294552|gb|AAF49893.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|189181777|gb|ACD81665.1| FI02845p [Drosophila melanogaster]
gi|190623527|gb|EDV39051.1| GF25112 [Drosophila ananassae]
gi|194119255|gb|EDW41298.1| GM24635 [Drosophila sechellia]
gi|194180716|gb|EDW94327.1| GE20102 [Drosophila yakuba]
gi|194196693|gb|EDX10269.1| GD12704 [Drosophila simulans]
Length = 124
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+++ T K+ LE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|194870009|ref|XP_001972567.1| GG13810 [Drosophila erecta]
gi|190654350|gb|EDV51593.1| GG13810 [Drosophila erecta]
Length = 124
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+++ T K+ LE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|302923356|ref|XP_003053658.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
gi|256734599|gb|EEU47945.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
Length = 114
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 14 EASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFM 73
+ + VT+ELK+G + G++ N L N+ T K L+ + IRGS +R+
Sbjct: 2 KCANETVTIELKNGTIVHGTISSVSPQMNTALRNVKMTIKGQDPVSLDTMNIRGSTIRYF 61
Query: 74 VIPDML 79
++PD L
Sbjct: 62 ILPDSL 67
>gi|71027801|ref|XP_763544.1| U6 snRNA-associated protein [Theileria parva strain Muguga]
gi|68350497|gb|EAN31261.1| U6 snRNA-associated protein, putative [Theileria parva]
Length = 141
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL +ELK+GE Y G + C+ N + N+ T+K G +L+ FI
Sbjct: 3 LPLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFI 62
Query: 66 RGSKVRFMVIPD 77
RG+ V+ + +P+
Sbjct: 63 RGNTVKSLRLPN 74
>gi|428671714|gb|EKX72629.1| U6 snRNA-associated protein, putative [Babesia equi]
Length = 111
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL +ELK+GE Y G + C+ N + N+ T+K G +L +I
Sbjct: 3 LPLTLLRAGKNQPTLIELKNGETYSGILESCDAFMNIHMLNVVCTSKSGTDFWKLNECYI 62
Query: 66 RGSKVRFMVIPD 77
RG+ V+ + +P+
Sbjct: 63 RGNNVKSLRLPN 74
>gi|399949948|gb|AFP65604.1| small nuclear ribonucleoprotein D1 [Chroomonas mesostigmatica
CCMP1168]
Length = 90
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 20 VTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDML 79
VT+ELK+G G +V+ + + N +N T + ++H+FIRG+K+R++++P+
Sbjct: 15 VTIELKNGVYISGLIVDIDKHMNIYFKNAKRTLNERNTIFIDHMFIRGNKIRYIILPNWF 74
Query: 80 KNAPMF 85
+F
Sbjct: 75 NFDSVF 80
>gi|340372719|ref|XP_003384891.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Amphimedon queenslandica]
Length = 136
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 20 VTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDML 79
TVEL++ +G++V +D N + Y DG V E++FI+GS++R++ IPD +
Sbjct: 25 TTVELRNEITIKGTIVNVDDKMNTTISGAEYKYLDGTVMNCENLFIQGSQIRYVHIPDDI 84
Query: 80 KNAPMFKRL 88
+ ++
Sbjct: 85 DPMTLLNKI 93
>gi|363755190|ref|XP_003647810.1| hypothetical protein Ecym_7144 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891846|gb|AET40993.1| hypothetical protein Ecym_7144 [Eremothecium cymbalariae
DBVPG#7215]
Length = 189
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQLEHVFI 65
+P+ LL A G + VELK+GE G + DNW N L N+ + + +V +L +++
Sbjct: 2 LPLYLLTNAKGQRMLVELKNGETIEGELTNV-DNWMNVTLGNVVHKGGE-QVLELPEIYV 59
Query: 66 RGSKVRFMVIPD 77
RGS ++++ + D
Sbjct: 60 RGSVIKYIKLQD 71
>gi|145510436|ref|XP_001441151.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408390|emb|CAK73754.1| unnamed protein product [Paramecium tetraurelia]
Length = 128
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ-LEHVFI 65
P+ LL A G V +E+K+G+ Y G + + N +L N+ +T+KDG ++ + I
Sbjct: 5 FPLSLLLTAKGSDVVIEVKAGDTYDGKLELLDKFMNVKLTNVKHTSKDGNSFHGIKELLI 64
Query: 66 RGSKVR-FMVIPDMLKNA 82
+G+ ++ F + PD K A
Sbjct: 65 KGNSIKYFRLNPDAEKKA 82
>gi|401884158|gb|EJT48330.1| hypothetical protein A1Q1_02613 [Trichosporon asahii var. asahii
CBS 2479]
Length = 264
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYT----AKDGKVSQLEHVF 64
V+ L + + VT+ELK+G + G++ + N L+++ + A + + L+ +
Sbjct: 146 VRFLMKLNNETVTIELKNGSVIHGTITSVDPQMNTHLKSVKMSLRNAAPNTPSTHLDSIA 205
Query: 65 IRGSKVRFMVIPDML 79
IRG+ +R+ ++PD L
Sbjct: 206 IRGNNIRYFILPDSL 220
>gi|346978140|gb|EGY21592.1| small nuclear ribonucleoprotein Sm D1 [Verticillium dahliae
VdLs.17]
Length = 121
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T K L+ + IRGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPIALDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|254578266|ref|XP_002495119.1| ZYRO0B03762p [Zygosaccharomyces rouxii]
gi|238938009|emb|CAR26186.1| ZYRO0B03762p [Zygosaccharomyces rouxii]
Length = 173
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-------NCQLENITYTAKDG---K 56
+P+ LL A G +++ELK+GE+ G ++ DNW Q +NI T G +
Sbjct: 2 LPLYLLTNAKGQQMSIELKNGEIVEGELINV-DNWMNVTLSNASQFDNIGTTVSVGPSKE 60
Query: 57 VSQLEHVFIRGSKVRFMVIPDML 79
V + + V+IRG+ ++++ + D +
Sbjct: 61 VVKAKEVYIRGTYIKYIRLQDEI 83
>gi|365981439|ref|XP_003667553.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS
421]
gi|343766319|emb|CCD22310.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS
421]
Length = 201
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENIT-YTAKDG------KVS 58
+P+ LL A G + VELK+GE+ G + DNW N L N++ Y D +V
Sbjct: 2 LPLYLLTNAKGQQMRVELKNGEVIEGKLTNV-DNWMNLTLSNVSEYKGSDAFASPQTEVM 60
Query: 59 QLEHVFIRGSKVRFMVIPD 77
+ +++RG+ ++++ +PD
Sbjct: 61 KSTEIYVRGTFIKYINLPD 79
>gi|323455004|gb|EGB10873.1| hypothetical protein AURANDRAFT_22657 [Aureococcus
anophagefferens]
Length = 114
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + +G++ + + N L+N + T K + + + +RGS
Sbjct: 4 VRFLMKLNNETVTIELKNGTVVQGTISGVDISMNTFLKNASLTPKGKNGVKYDTLSVRGS 63
Query: 69 KVRFMVIPDML 79
VR+ ++PD L
Sbjct: 64 NVRYYILPDSL 74
>gi|164657680|ref|XP_001729966.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
gi|159103860|gb|EDP42752.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
Length = 120
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + N L+ + T + G+ L+ + IRG+
Sbjct: 4 VRFLMKLNNESVTIELKNGTVIHGTVTGVDVQMNTHLKAVKMTVRGGEPISLDTLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
R+ ++PD L + R KGK
Sbjct: 64 NTRYWILPDALPLDTLLVDDAPRPKGK 90
>gi|298709372|emb|CBJ31306.1| Small nuclear ribonucleoprotein-associated protein D1 [Ectocarpus
siliculosus]
Length = 107
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VTVELK+G G++ + + N L+N+ T K + + + IRG+
Sbjct: 4 VRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R ++PD L
Sbjct: 64 NIRCYILPDNL 74
>gi|328862810|gb|EGG11910.1| hypothetical protein MELLADRAFT_32687 [Melampsora larici-populina
98AG31]
Length = 113
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 20 VTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDML 79
VTVELK+G + G++ + N L+ + T ++ + QL+ + IRGS +R+ ++PD L
Sbjct: 12 VTVELKNGTVIHGTISGVDVAMNTHLKAVKMTVRNREPQQLDSLSIRGSNIRYFILPDSL 71
>gi|85000985|ref|XP_955211.1| u6 snrna-associated sm-like protein lsm4 [Theileria annulata
strain Ankara]
gi|65303357|emb|CAI75735.1| u6 snrna-associated sm-like protein lsm4, putative [Theileria
annulata]
Length = 105
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL +ELK+GE Y G + C+ N + N+ T+K G +L+ FI
Sbjct: 3 LPLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFI 62
Query: 66 RGSKVRFMVIPD 77
RG+ V+ + +P+
Sbjct: 63 RGNTVKSLRLPN 74
>gi|17945870|gb|AAL48981.1| RE39488p [Drosophila melanogaster]
Length = 124
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+++ T K+ LE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>gi|406867718|gb|EKD20756.1| small nuclear ribonucleoprotein Sm D1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 128
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ N L + T + L+ + +RGS
Sbjct: 4 VRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPISLDTINLRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYYILPDSL 74
>gi|403221309|dbj|BAM39442.1| small ribonucleoprotein D1 [Theileria orientalis strain Shintoku]
Length = 125
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAK--DGK----VSQLEH 62
V+ L + + VTVELK+G + G+++ + + N L+N+ K DGK V L+H
Sbjct: 4 VRFLMKLANESVTVELKNGTVLTGTVIGIDISMNTHLKNVKVVNKNSDGKDGPNVVLLDH 63
Query: 63 VFIRGSKVRFMVIPD 77
+ +RG+ +R+ ++ D
Sbjct: 64 LTVRGNNIRYFILSD 78
>gi|195435704|ref|XP_002065819.1| GK18761 [Drosophila willistoni]
gi|194161904|gb|EDW76805.1| GK18761 [Drosophila willistoni]
Length = 124
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+++ T ++ LE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIRNRDPVHLESLSIRGN 63
Query: 69 KVRFMVIPDML 79
VR+ ++PD L
Sbjct: 64 NVRYFILPDSL 74
>gi|84998206|ref|XP_953824.1| small ribonucleoprotein D1 [Theileria annulata]
gi|65304821|emb|CAI73146.1| small ribonucleoprotein D1, putative [Theileria annulata]
Length = 125
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAK--DGK----VSQLEH 62
V+ L + + VTVELK+G + G+++ + + N L+N+ K DGK V L+H
Sbjct: 4 VRFLMKLANESVTVELKNGTVLTGTVIGIDISMNTHLKNVKVVNKGSDGKEGTNVVVLDH 63
Query: 63 VFIRGSKVRFMVIPD 77
+ +RG+ +R+ ++ D
Sbjct: 64 LTVRGNNIRYFILSD 78
>gi|440290998|gb|ELP84297.1| proteasome subunit beta type-3, putative [Entamoeba invadens IP1]
Length = 265
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIR 66
+P+ LL A G + +ELK+G Y G++ +C+ N +++ DGK ++ + ++
Sbjct: 187 LPINLLENAQGKTIVLELKNGNKYTGTLEKCDRMMNLHVKDSVLIQPDGKKFKVAKIIVK 246
Query: 67 GSKVR-FMVIPDMLKNA 82
G VR F V ++LK +
Sbjct: 247 GMAVRCFAVDGELLKKS 263
>gi|442757617|gb|JAA70967.1| Putative small nuclear ribonucleoprotein d1 [Ixodes ricinus]
Length = 118
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+ + T K+ + QL+ + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREPVQLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYLLPDSL 74
>gi|299742717|ref|XP_001832694.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
gi|298405314|gb|EAU89114.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
Length = 136
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
G+ L + + VT+ELK+G + G++ + N L+ + T ++ + + L+ + I
Sbjct: 17 GVMNAFLMKLNNETVTIELKNGAVVHGTITGVDMQMNTFLKTVKMTMRNREPTSLDTLSI 76
Query: 66 RGSKVRFMVIPDML 79
RG+ +R+ ++PD L
Sbjct: 77 RGNNIRYFILPDAL 90
>gi|159486837|ref|XP_001701443.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
gi|158271625|gb|EDO97440.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
Length = 114
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 43/80 (53%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + + V +ELK+G + +G++ + N L+ + TA+ ++H+ +RG+
Sbjct: 1 RFLMKLANETVQIELKNGTVIQGTIAGVDIAMNTHLKAVKLTARGKNPVSMDHLSVRGNN 60
Query: 70 VRFMVIPDMLKNAPMFKRLD 89
+R+ ++PD L + +D
Sbjct: 61 IRYYILPDSLNLDTLLVDID 80
>gi|427786235|gb|JAA58569.1| Putative small nuclear ribonucleoprotein d1 [Rhipicephalus
pulchellus]
Length = 120
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+ + T K+ + QL+ + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREPVQLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYLLPDSL 74
>gi|71020725|ref|XP_760593.1| hypothetical protein UM04446.1 [Ustilago maydis 521]
gi|46100481|gb|EAK85714.1| hypothetical protein UM04446.1 [Ustilago maydis 521]
Length = 146
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ A + VELK+G + G +V C++ N L + T+ G + + + +I
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECYI 61
Query: 66 RGSKVRFMVIPD 77
RGS +++ + D
Sbjct: 62 RGSTIKYCRVAD 73
>gi|346324354|gb|EGX93951.1| small nuclear ribonucleoprotein Sm D1 [Cordyceps militaris CM01]
Length = 119
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VT+ELK+G + G++ N L + T + + L+ + IRGS
Sbjct: 4 VRFLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQEPISLDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|452821316|gb|EME28348.1| small nuclear ribonucleoprotein D1 [Galdieria sulphuraria]
Length = 122
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + + VTVELK+G + +G++ + N N L+ + T + L+ + +RGS
Sbjct: 5 RFLMKLNSETVTVELKNGTVVQGTVTGVDHNMNTTLKAVKMTPRGKNPVTLDAMSLRGST 64
Query: 70 VRFMVIPDML 79
+R+ ++P+ L
Sbjct: 65 IRYFILPESL 74
>gi|66509459|ref|XP_624938.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Apis mellifera]
gi|340728072|ref|XP_003402355.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Bombus terrestris]
gi|350424394|ref|XP_003493781.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Bombus impatiens]
gi|383861733|ref|XP_003706339.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Megachile rotundata]
Length = 123
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+ + T K+ QL+ + +RG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKTVKMTIKNRDPVQLDTLSLRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|156538102|ref|XP_001608160.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Nasonia vitripennis]
Length = 123
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+ + T K+ QL+ + +RG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKTVKMTIKNRDPVQLDTLSLRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|340057108|emb|CCC51450.1| putative small nuclear ribonucleoprotein [Trypanosoma vivax Y486]
Length = 127
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSM----VECEDNWNCQLENITYTAKDGKVSQLEH 62
+PV+ + EA+G V VE G +Y G + V C D +L + +D +S
Sbjct: 4 VPVRAVCEATGFFVKVETVEGTVYLGRLDKVDVSCGD---VELSEVRCQHRDSSLSVEGR 60
Query: 63 VFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGK-SSSIGVGRGRA 106
VFI+GS VR + +P ++NA + ++ + SS+ V RGR
Sbjct: 61 VFIKGSCVRLLHLPSDMRNALFLDWKNPDVQKELRSSLKVRRGRV 105
>gi|170596751|ref|XP_001902883.1| Sm protein [Brugia malayi]
gi|158589165|gb|EDP28269.1| Sm protein [Brugia malayi]
Length = 130
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 20 VTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDML 79
VT+ELK+G + G + + N L ++ T K K + ++ V IRG+ +R+++ P+ L
Sbjct: 8 VTIELKNGTVVMGYVSSVDLAMNFHLNRVSMTLKSEKPASVDAVSIRGNNIRYIIFPNNL 67
Query: 80 KNAPMFKRLDARIKGKSSSIGVGRGRAVAMR-AKAAAAGRGAAPGR 124
+ + + + + G + VA+R + +GRG GR
Sbjct: 68 NLDALMIDIPQQTRRTRKTSGQAHSQGVAVRGGRDRNSGRGGPCGR 113
>gi|47028291|gb|AAT09078.1| small nuclear ribonucleoprotein Sm-D1 [Bigelowiella natans]
Length = 120
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
VK L + VTVELK+G + +G++ + + N L+ + T K L+ + IRG+
Sbjct: 4 VKFLMRLNNETVTVELKNGTVVQGTISGVDMSMNTHLKIVKMTLKGKNPVHLDTLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDA----RIKGKSSS 98
+R+ ++PD L LDA +K K++S
Sbjct: 64 NIRYFILPDSL-------NLDALLVEEVKKKTTS 90
>gi|297829310|ref|XP_002882537.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328377|gb|EFH58796.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 102
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + + N L+ + + K ++H+ +RG+
Sbjct: 4 VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTIDHLSLRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
+R+ ++PD L + R+K K G
Sbjct: 64 NIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95
>gi|391333356|ref|XP_003741082.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Metaseiulus occidentalis]
Length = 120
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKD-GKVSQLEHVFIRG 67
V+ L + S VT+ELK+G G++ + N L+N+ T K+ + LE + IRG
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTVTGVDVAMNTHLKNVKMTLKNAAEPVSLETLSIRG 63
Query: 68 SKVRFMVIPDML 79
+ +R+ ++PD L
Sbjct: 64 NNIRYYILPDSL 75
>gi|156086674|ref|XP_001610746.1| small nuclear ribonucleoprotein Sm subunit [Babesia bovis T2Bo]
gi|154797999|gb|EDO07178.1| small nuclear ribonucleoprotein Sm subunit, putative [Babesia
bovis]
Length = 125
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKD-GKVSQ-----LEH 62
V+ L + + VTVELK+G + G+++ + + N L+N+ KD G S+ L+H
Sbjct: 4 VRFLMKLANESVTVELKNGTVLTGTVIGVDISMNTHLKNVKIVNKDSGSGSEPNYILLDH 63
Query: 63 VFIRGSKVRFMVIPDML 79
+ +RG+ +R+ ++ D L
Sbjct: 64 LTVRGNNIRYFILSDSL 80
>gi|367011739|ref|XP_003680370.1| hypothetical protein TDEL_0C02700 [Torulaspora delbrueckii]
gi|359748029|emb|CCE91159.1| hypothetical protein TDEL_0C02700 [Torulaspora delbrueckii]
Length = 175
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQL----- 60
+P+ LL A G V+VELK+GE+ G + DNW N L N++ G +
Sbjct: 2 LPLYLLTNAKGQQVSVELKNGEIVEGELTNV-DNWMNLTLSNVSQQDTIGNSGNIAFQKE 60
Query: 61 ----EHVFIRGSKVRFMVIPD 77
+ V++RG+ ++++ + D
Sbjct: 61 IVKSQEVYLRGTYIKYIKLQD 81
>gi|407040985|gb|EKE40459.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 107
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VVT+ELKSG + G++V ++ N L+ + T K L+ +RG+
Sbjct: 4 VRFLMRLTNEVVTIELKSGAILTGTIVGVDNYMNVHLKVVKMTQKGKNPINLDQSTVRGN 63
Query: 69 KVRFMVIPDML 79
+R +++P+ L
Sbjct: 64 TIRNIILPESL 74
>gi|260944226|ref|XP_002616411.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
gi|238850060|gb|EEQ39524.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
Length = 71
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 20 VTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
+ VELK+GE G + C+ N L N+ + G K +++E ++IRGS ++++ +PD
Sbjct: 10 ILVELKNGETVIGKLSNCDSWMNLTLSNVVHNYNKGEKFNKIEEIYIRGSHIKYLRLPD 68
>gi|56758868|gb|AAW27574.1| unknown [Schistosoma japonicum]
gi|226468946|emb|CAX76501.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472888|emb|CAX71130.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 118
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+KL HE VT+ELK+G GS+ + + N + ++T T K+ L+ + +RG+
Sbjct: 1 MKLSHET----VTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGN 56
Query: 69 KVRFMVIPDML 79
+R+ ++P+ L
Sbjct: 57 NIRYFILPESL 67
>gi|168021867|ref|XP_001763462.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685255|gb|EDQ71651.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 121
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V ++ G + VEL++ RG + +C++ N +++ T +G QL VF+RGS
Sbjct: 14 VCVIQALMGLELLVELRNDLSIRGILDDCDNAMNVIIKDATVEDVEGVQKQLPLVFLRGS 73
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGA 120
+RF+ IPD N + K ++ R R + +A A G+GA
Sbjct: 74 NIRFVHIPD---NVDIMKLVEER-------------RLMLDQAATAYTGKGA 109
>gi|348571487|ref|XP_003471527.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like [Cavia
porcellus]
Length = 123
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 11 LLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKV 70
LL G V TV+L+ + G + + N +L +TYT + G +L+ +FI G V
Sbjct: 20 LLQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRRGHQVELDDLFITGRNV 79
Query: 71 RFMVIPD 77
R++ IPD
Sbjct: 80 RYVHIPD 86
>gi|321455706|gb|EFX66832.1| hypothetical protein DAPPUDRAFT_302421 [Daphnia pulex]
Length = 125
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S V +ELK+G G++ + N L+ + T K+ QLE + IRG+
Sbjct: 4 VRFLMKLSHETVIIELKNGTQVHGTITGVDVAMNTHLKAVKMTVKNRDPVQLETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>gi|398410479|ref|XP_003856589.1| hypothetical protein MYCGRDRAFT_78925 [Zymoseptoria tritici
IPO323]
gi|339476474|gb|EGP91565.1| hypothetical protein MYCGRDRAFT_78925 [Zymoseptoria tritici
IPO323]
Length = 100
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 17 GHVVTVELKSGELYRGSMVECEDNWNCQLENITYT--AKDGKVSQLEHVFIRGSKVRFMV 74
H VTVELK+ RG++ + N +L+NI+ K +S +++VFIRGS VR++
Sbjct: 12 NHEVTVELKNDISIRGTLKSVDQFLNIKLDNISVVDEVKFPHLSSVKNVFIRGSVVRYVH 71
Query: 75 IPDMLKNAPMFK 86
+P + P+ +
Sbjct: 72 LPAAAVDTPLLE 83
>gi|195160693|ref|XP_002021209.1| GL24936 [Drosophila persimilis]
gi|194118322|gb|EDW40365.1| GL24936 [Drosophila persimilis]
Length = 118
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+KL HE VT+ELK+G G++ + N L+++ T K+ LE + IRG+
Sbjct: 1 MKLSHET----VTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLESLSIRGN 56
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 57 NIRYFILPDSL 67
>gi|400602721|gb|EJP70323.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 119
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VT+ELK+G + G++ N L + T + L+ + IRGS
Sbjct: 4 VRFLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQDPISLDTMNIRGS 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 TIRYFILPDSL 74
>gi|196003304|ref|XP_002111519.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
gi|190585418|gb|EDV25486.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
Length = 130
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + G++ + + N L+++ T K+ + L+ + IRG+
Sbjct: 4 VRFLMKINHETVTIELKNGTVVHGTVWGVDMSMNTHLKSVKMTVKNREPVTLDTLAIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDNL 74
>gi|426328967|ref|XP_004025517.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Gorilla
gorilla gorilla]
Length = 123
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ LL G V TV+L+ + G + + N +L N+TYT + G +L+ +F+ G
Sbjct: 18 IILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLANVTYTDRWGHQVKLDDLFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>gi|340054663|emb|CCC48964.1| putative small nuclear ribonucleoprotein [Trypanosoma vivax Y486]
Length = 100
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ L + G +V +EL + + G + E N N + ++ T K +E +RGS
Sbjct: 10 IGFLQQLRGTLVEIELNNSTVASGEIAFVEPNMNTHMRHVKITEKGKNPELVETYMVRGS 69
Query: 69 KVRFMVIPDMLKNAPMFKRLDA 90
K+R++++P+ + + K+ A
Sbjct: 70 KIRYVILPEAMNTDDVLKKASA 91
>gi|410084212|ref|XP_003959683.1| hypothetical protein KAFR_0K01940 [Kazachstania africana CBS
2517]
gi|372466275|emb|CCF60548.1| hypothetical protein KAFR_0K01940 [Kazachstania africana CBS
2517]
Length = 182
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENIT-YTAKDGKVSQLE--- 61
+P+ LL A G + VELKSGE+ G + DNW N L NI+ Y DG QLE
Sbjct: 2 LPLYLLTNAKGQQMRVELKSGEIIEGELTNV-DNWMNLTLRNISEYKNTDGS-PQLEVVK 59
Query: 62 --HVFIRGSKVRFMVIPD 77
++++G ++++ + D
Sbjct: 60 SSEIYLKGIYIKYIKLQD 77
>gi|261203087|ref|XP_002628757.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|239586542|gb|EEQ69185.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|327349625|gb|EGE78482.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 98
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG--KVSQLEHVFIRGSKVRFM 73
+ H VT+ELK+ RG++ + N +L++I D +S ++++F+RGS VR++
Sbjct: 11 TNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNIFVRGSVVRYI 70
Query: 74 VIP 76
V+P
Sbjct: 71 VLP 73
>gi|334186331|ref|NP_001190664.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|332656837|gb|AEE82237.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 126
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVE----------CEDNWNCQLENITYTAKDGKVS 58
V+ L + + V++ELK+G + G++ + + + N L+ + T K
Sbjct: 4 VRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGKNPV 63
Query: 59 QLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIG 100
L+H+ +RG+ +R+ ++PD L + RIK K + G
Sbjct: 64 TLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 105
>gi|444706872|gb|ELW48189.1| U7 snRNA-associated Sm-like protein LSm10 [Tupaia chinensis]
Length = 156
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ LL G V TV+L+ + RG + + N +L +TYT + G +L+ +F+ G
Sbjct: 51 IILLQGLQGLVTTVDLRDESVARGRIDNVDAFMNIRLAQVTYTDRWGHQVKLDDLFVTGR 110
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 111 NVRYVHIPD 119
>gi|332028488|gb|EGI68529.1| Putative small nuclear ribonucleoprotein Sm D1 [Acromyrmex
echinatior]
Length = 116
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+KL HE VT+ELK+G G++ + N L+ + T K+ + QLE + +RG+
Sbjct: 1 MKLSHET----VTIELKNGTQVTGTITGVDVAMNTHLKTVKMTIKNREPIQLETLSLRGN 56
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 57 NIRYYILPDSL 67
>gi|253743591|gb|EES99946.1| Small nuclear ribonucleoprotein F, putative [Giardia intestinalis
ATCC 50581]
Length = 107
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGK--VSQLEHVFI 65
P + L E+ G V V LK G+ Y G++V ++ +N +L+N +++G+ +S L+ VFI
Sbjct: 30 PGRFLTESIGRKVVVRLKGGQEYTGTLVSYDNYYNLRLKNCIEKSREGRHALSSLKDVFI 89
Query: 66 RGSKVRFM 73
R + V +
Sbjct: 90 RCTSVHLI 97
>gi|183234262|ref|XP_001913982.1| small nuclear ribonucleoprotein Sm D1 [Entamoeba histolytica
HM-1:IMSS]
gi|183237106|ref|XP_655345.2| small nuclear ribonucleoprotein Sm D1 [Entamoeba histolytica
HM-1:IMSS]
gi|169799375|gb|EAL49955.2| small nuclear ribonucleoprotein Sm D1, putative [Entamoeba
histolytica HM-1:IMSS]
gi|169801178|gb|EDS89240.1| small nuclear ribonucleoprotein Sm D1, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702378|gb|EMD43029.1| LSM domain containing protein [Entamoeba histolytica KU27]
Length = 107
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + VVT+ELKSG + G++V ++ N L+ + T K L+ +RG+
Sbjct: 4 VRFLMRLTNEVVTIELKSGAVLTGTIVGVDNYMNVHLKVVKMTQKGKNPINLDQSTVRGN 63
Query: 69 KVRFMVIPDML 79
+R +++P+ L
Sbjct: 64 TIRNIILPESL 74
>gi|354496952|ref|XP_003510587.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like,
partial [Cricetulus griseus]
Length = 102
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75
G + TV+L+ RG + + N +L N+TYT + G +L+ +F+ G VR++ I
Sbjct: 5 QGQITTVDLQDESSARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNVRYVHI 64
Query: 76 PD 77
PD
Sbjct: 65 PD 66
>gi|225683183|gb|EEH21467.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
Length = 118
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG--KVSQLEHVFIRGSKVRFM 73
+ H VTVELK+ RG++ + N +L++I D +S ++++F+RGS VR++
Sbjct: 11 TNHTVTVELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNIFVRGSVVRYV 70
Query: 74 VIP 76
V+P
Sbjct: 71 VLP 73
>gi|307165950|gb|EFN60277.1| Probable malonyl CoA-acyl carrier protein transacylase,
mitochondrial [Camponotus floridanus]
Length = 463
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 10 KLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSK 69
+ L + S VT+ELK+G G++ + N L+ + T K+ QLE + +RG+
Sbjct: 345 RFLMKLSHETVTIELKNGTQVTGTITGVDVAMNTHLKTVKMTIKNRDPIQLETLSLRGNN 404
Query: 70 VRFMVIPDML 79
+R+ ++PD L
Sbjct: 405 IRYYILPDSL 414
>gi|328873443|gb|EGG21810.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 185
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
+ ++ L + VT+ELK+G + G++V + + N L+ + T K L+ + I
Sbjct: 34 NVTLRFLMKLHNETVTIELKNGTIIHGTIVGVDVSMNTHLKTVKLTLKGKNPINLDTLSI 93
Query: 66 RGSKVRFMVIPDMLK 80
RG+ +R+ ++P+ L
Sbjct: 94 RGNNIRYYILPESLN 108
>gi|325087346|gb|EGC40656.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus H88]
Length = 148
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG--KVSQLEHVFIRGSKVRFM 73
+ H VT+ELK+ RG++ + N +L++I D +S ++++F+RGS VR++
Sbjct: 61 TNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNIFVRGSVVRYI 120
Query: 74 VIP 76
V+P
Sbjct: 121 VLP 123
>gi|389633655|ref|XP_003714480.1| glycine rich protein [Magnaporthe oryzae 70-15]
gi|351646813|gb|EHA54673.1| glycine rich protein [Magnaporthe oryzae 70-15]
gi|440476439|gb|ELQ45036.1| glycine rich protein [Magnaporthe oryzae Y34]
gi|440489076|gb|ELQ68756.1| glycine rich protein [Magnaporthe oryzae P131]
Length = 121
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 22 VELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPD 77
VELK+GE G +V+C+ N L + T+ DG K +L ++++G+ ++++ +PD
Sbjct: 3 VELKNGETLNGHLVQCDTWMNLTLREVVQTSPDGDKFMRLPEIYVKGNNIKYLRVPD 59
>gi|295672151|ref|XP_002796622.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226283602|gb|EEH39168.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226288343|gb|EEH43855.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides
brasiliensis Pb18]
Length = 98
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG--KVSQLEHVFIRGSKVRFM 73
+ H VT+ELK+ RG++ + N +L++I D +S ++++F+RGS VR++
Sbjct: 11 TNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNIFVRGSVVRYV 70
Query: 74 VIP 76
V+P
Sbjct: 71 VLP 73
>gi|431891086|gb|ELK01963.1| U7 snRNA-associated Sm-like protein LSm10 [Pteropus alecto]
Length = 123
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 11 LLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKV 70
LL G V TV+L+ + G + + N +L +TYT + G ++L+ +F+ G V
Sbjct: 20 LLQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQAELDDLFVTGRNV 79
Query: 71 RFMVIPD 77
R++ IPD
Sbjct: 80 RYVHIPD 86
>gi|321252513|ref|XP_003192431.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|317458899|gb|ADV20644.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
Length = 121
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ----LEHVFIRGSKVR 71
+ VT+ELK+G + G++ + N L+++ T + SQ L+ + IRG+ +R
Sbjct: 4 NNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGNNIR 63
Query: 72 FMVIPDML 79
+ ++PD L
Sbjct: 64 YFILPDSL 71
>gi|58262702|ref|XP_568761.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108736|ref|XP_777021.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259704|gb|EAL22374.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223411|gb|AAW41454.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 121
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ----LEHVFIRGSKVR 71
+ VT+ELK+G + G++ + N L+++ T + SQ L+ + IRG+ +R
Sbjct: 4 NNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGNNIR 63
Query: 72 FMVIPDML 79
+ ++PD L
Sbjct: 64 YFILPDSL 71
>gi|390599258|gb|EIN08655.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 144
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S P + L + + VT+ELK+G + G++ + N L+ + + ++ + L+ +
Sbjct: 23 SFFAPDRFLMKLNNESVTIELKNGSVVHGTITGVDMQMNTHLKTVKMSMRNREPVSLDTL 82
Query: 64 FIRGSKVRFMVIPDML 79
IRG+ +R+ V+PD L
Sbjct: 83 SIRGNNIRYFVLPDAL 98
>gi|341892180|gb|EGT48115.1| hypothetical protein CAEBREN_25098 [Caenorhabditis brenneri]
gi|341901485|gb|EGT57420.1| CBN-SNR-3 protein [Caenorhabditis brenneri]
Length = 126
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S V +ELK+G G+++ + N L ++ T K+ + +L+ + IRG+
Sbjct: 4 VRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 64 NIRYIILPDPL 74
>gi|308502654|ref|XP_003113511.1| CRE-SNR-3 protein [Caenorhabditis remanei]
gi|308263470|gb|EFP07423.1| CRE-SNR-3 protein [Caenorhabditis remanei]
Length = 127
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S V +ELK+G G+++ + N L ++ T K+ + +L+ + IRG+
Sbjct: 4 VRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 64 NIRYIILPDPL 74
>gi|17536583|ref|NP_495306.1| Protein SNR-3 [Caenorhabditis elegans]
gi|2833218|sp|Q10013.1|SMD1_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D1;
Short=Sm-D1; AltName: Full=snRNP core protein D1
gi|351064345|emb|CCD72707.1| Protein SNR-3 [Caenorhabditis elegans]
Length = 126
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S V +ELK+G G+++ + N L ++ T K+ + +L+ + IRG+
Sbjct: 4 VRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 64 NIRYIILPDPL 74
>gi|388854491|emb|CCF51878.1| probable small nuclear ribonucleoprotein SNRPD1 [Ustilago hordei]
Length = 134
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + VT+ELK+G + GS+ + N L+ + T + L+ + IRG+
Sbjct: 4 VRFLMKLNNESVTIELKNGTVVHGSVTGVDIQMNTHLKTVKMTLRGRPAVALDTLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYWILPDAL 74
>gi|325303250|tpg|DAA34761.1| TPA_inf: small nuclear ribonucleoprotein SMD1 [Amblyomma
variegatum]
gi|346469165|gb|AEO34427.1| hypothetical protein [Amblyomma maculatum]
gi|346469167|gb|AEO34428.1| hypothetical protein [Amblyomma maculatum]
Length = 120
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+ + T ++ + QL+ + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMRNREPVQLDSLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYLLPDSL 74
>gi|259146036|emb|CAY79296.1| Lsm4p [Saccharomyces cerevisiae EC1118]
Length = 187
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQLEHV-- 63
+P+ LL A G + +ELK+GE+ +G + DNW N L N+T +++ ++ ++V
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNV-DNWMNLTLSNVTEYSEESAINSEDNVES 60
Query: 64 ---------FIRGSKVRFMVIPDML 79
+IRG+ ++F+ + D +
Sbjct: 61 SKAVKSNEIYIRGTFIKFIKLQDNI 85
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,940,886,180
Number of Sequences: 23463169
Number of extensions: 70296264
Number of successful extensions: 247422
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 245279
Number of HSP's gapped (non-prelim): 1471
length of query: 132
length of database: 8,064,228,071
effective HSP length: 97
effective length of query: 35
effective length of database: 10,083,267,974
effective search space: 352914379090
effective search space used: 352914379090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)