BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032863
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3
PE=2 SV=1
Length = 126
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 109
>sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3
PE=1 SV=1
Length = 126
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 109
>sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3
PE=1 SV=1
Length = 126
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 87/112 (77%), Gaps = 4/112 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAA 115
+IRGSK+RF+++PDMLKNAPM K + K K+ G GRG+A ++A+ AA
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAA 109
>sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster
GN=SmD3 PE=1 SV=1
Length = 151
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 85/110 (77%), Gaps = 4/110 (3%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ+ IT T +DG+ + LE+V
Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENV 61
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKA 113
+IRGSK+RF+++PDMLKNAPMFK+ + G ++ GRG+A +RA+A
Sbjct: 62 YIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTA----GRGKAAILRAQA 107
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans
GN=snr-1 PE=2 SV=2
Length = 136
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 81/115 (70%), Gaps = 11/115 (9%)
Query: 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHV 63
S+G+P+K+LHEA GH+VT+E +GE+YRG + E EDN NCQL T +DG+ QL++V
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNV 62
Query: 64 FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGV--------GRGRAVAMR 110
FIRG+K+RFM++PDMLKNAPMFK + KG +IG+ GRGR A R
Sbjct: 63 FIRGNKIRFMILPDMLKNAPMFKNIGRAQKG---AIGMGLGGLDQRGRGRGTAFR 114
>sp|Q9UUC6|SMD3_SCHPO Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1
Length = 97
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 68/82 (82%)
Query: 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVF 64
+ + +KLLHE GH+VT+EL++G YRG ++E EDN NCQ+ +I+ TA+DG+VS L+ V+
Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFK 86
IRGS +RF+++PDML+NAPMFK
Sbjct: 61 IRGSHIRFLIVPDMLRNAPMFK 82
>sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1
Length = 101
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 67/86 (77%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFI 65
GIPVKLL+EA GH+V++EL +G YRG +VE ED+ N QL ++ T G V+ ++ +F+
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFV 64
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDAR 91
RGS+++F+V+PD+LKNAP+FK+ +R
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFKKNSSR 90
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium
discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL GH + VELK+GE Y G +V C DNW N L+N+ T+KD K +++ +
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNC-DNWMNINLKNVIRTSKDSDKFWKIQSCY 60
Query: 65 IRGSKVRFMVIPDMLKNAPMFKRLDARI---KGKSSSIGVGRGRAVAMRAKAAAAGRG 119
IRG+ ++++ +PD + + + R + S+ G GRG A R + A+GRG
Sbjct: 61 IRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRG 118
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG + ++ ++
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYV 61
Query: 66 RGSKVRFMVIPDMLKNAPMFKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGRG 125
RG+ ++++ +PD + + + +A+ + GVGR RA R +A + GRG
Sbjct: 62 RGNTIKYLRVPDEVIDK---VQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRG 118
Query: 126 V 126
+
Sbjct: 119 M 119
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4
PE=2 SV=1
Length = 137
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELKSGE Y G +V C+ N L + T+KDG + ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4
PE=1 SV=1
Length = 139
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4
PE=2 SV=1
Length = 139
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
+P+ LL A H + VELK+GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 65 IRGSKVRFMVIPD 77
IRGS ++++ IPD
Sbjct: 61 IRGSTIKYLRIPD 73
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa
subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A GH + VELK+GE Y G +V C+ N L + T+KDG K ++ +I
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL A H + VELK+GE Y G + C+ N L ++ +T+KDG K ++ ++
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
Query: 66 RGSKVRFMVIPD 77
RGS ++++ IP+
Sbjct: 63 RGSTIKYLRIPE 74
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1
PE=2 SV=1
Length = 119
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1
PE=1 SV=1
Length = 119
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1
PE=3 SV=1
Length = 119
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + + N L+ + T K+ + QLE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 63
Query: 69 KVRFMVIPDMLKNAPMFKRLDARIKGK 95
+R+ ++PD L + ++ ++K K
Sbjct: 64 NIRYFILPDSLPLDTLLVDVEPKVKSK 90
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65
+P+ LL+ G + VELK+GE + G + C++ N L + T DG K +L +I
Sbjct: 2 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYI 61
Query: 66 RGSKVRFMVIPD 77
RG+ ++++ I D
Sbjct: 62 RGNNIKYLRIQD 73
>sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus
GN=Lsm10 PE=1 SV=1
Length = 122
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ LL G + TV+L+ + RG + + N +L N+TYT + G +L+ +F+ G
Sbjct: 18 IILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1
SV=1
Length = 187
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENIT-YT----------AKD 54
+P+ LL A G + +ELK+GE+ +G + DNW N L N+T Y+ A+
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNV-DNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 55 GKVSQLEHVFIRGSKVRFMVIPD 77
K +L ++IRG+ ++F+ + D
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQD 83
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila
melanogaster GN=SmD1 PE=1 SV=1
Length = 124
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S VT+ELK+G G++ + N L+++ T K+ LE + IRG+
Sbjct: 4 VRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYFILPDSL 74
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis
elegans GN=snr-3 PE=3 SV=1
Length = 126
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + S V +ELK+G G+++ + N L ++ T K+ + +L+ + IRG+
Sbjct: 4 VRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R++++PD L
Sbjct: 64 NIRYIILPDPL 74
>sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1
Length = 117
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
V+ L + + V++ELK+G + G++ + N L+ + T K + +E + IRG+
Sbjct: 4 VRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGN 63
Query: 69 KVRFMVIPDML 79
+R+ ++PD L
Sbjct: 64 NIRYYILPDSL 74
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens
GN=LSM10 PE=1 SV=1
Length = 123
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
+ LL G V TV+L+ + G + + N +L +TYT + G +L+ +F+ G
Sbjct: 18 IILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGR 77
Query: 69 KVRFMVIPD 77
VR++ IPD
Sbjct: 78 NVRYVHIPD 86
>sp|Q9LM90|Y1060_ARATH B3 domain-containing protein At1g20600 OS=Arabidopsis thaliana
GN=At1g20600 PE=2 SV=1
Length = 237
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/18 (100%), Positives = 18/18 (100%)
Query: 54 DGKVSQLEHVFIRGSKVR 71
DGKVSQLEHVFIRGSKVR
Sbjct: 215 DGKVSQLEHVFIRGSKVR 232
>sp|A4RQ29|LSM6_MAGO7 U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3
SV=1
Length = 83
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRG 67
P L E G++VTV+L SG +Y+G + + N LE K F+RG
Sbjct: 14 PTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRG 73
Query: 68 SKVRFM 73
+ V ++
Sbjct: 74 NNVMYI 79
>sp|Q0UWI9|LSM6_PHANO U6 snRNA-associated Sm-like protein LSm6 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=LSM6 PE=3
SV=2
Length = 89
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRG 67
P L E G VTV+L SG +Y+G + + N LE A+ + F+RG
Sbjct: 19 PSGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRVIRNWGDAFVRG 78
Query: 68 SKVRFM 73
+ V ++
Sbjct: 79 NNVTYI 84
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=LSM6 PE=3 SV=2
Length = 82
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRG 67
P L E G+ VTV+L SG +Y+G + + N LE K F+RG
Sbjct: 14 PSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRG 73
Query: 68 SKVRFM 73
+ V ++
Sbjct: 74 NNVMYI 79
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ-LEHVFIR 66
P L E +G VTV+L SG +Y+G + + N LE T DGK+ + F+R
Sbjct: 12 PSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEK-TEEYVDGKLRRSYGDAFVR 70
Query: 67 GSKVRFM 73
G+ V ++
Sbjct: 71 GNNVLYI 77
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=lsm6 PE=3 SV=2
Length = 80
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ-LEHVFIR 66
P L E G VTV+L SG +YRG + + N LE + DGK+ + FIR
Sbjct: 12 PSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALER-SEEFVDGKLRRSYGDAFIR 70
Query: 67 GSKVRFM 73
G+ V ++
Sbjct: 71 GNNVLYI 77
>sp|O94408|LSM2_SCHPO U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm2 PE=3 SV=1
Length = 96
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 20 VTVELKSGELYRGSMVECEDNWNCQLENITYT--AKDGKVSQLEHVFIRGSKVRFM 73
VTVELK+ RG + + N +LENI+ +K ++ ++ +FIRGS VR++
Sbjct: 15 VTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYV 70
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=lsm6 PE=3 SV=2
Length = 78
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ-LEHVFIR 66
P L E G VTV+L SG +Y+G + + N LE + DGK+ + FIR
Sbjct: 11 PSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQ-SKEFMDGKLRRSYGDAFIR 69
Query: 67 GSKVRFM 73
G+ V ++
Sbjct: 70 GNNVLYI 76
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis
(strain RS) GN=LSM6 PE=3 SV=1
Length = 80
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKV-SQLEHVFIR 66
P L +G VTV+L SG +Y+G + + N LE T +GK+ VF+R
Sbjct: 12 PSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEK-TQEFVNGKLRKSYGDVFVR 70
Query: 67 GSKVRFM 73
G+ V ++
Sbjct: 71 GNNVLYI 77
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=lsm-6 PE=3 SV=2
Length = 82
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRG 67
P L E G+ VTV+L SG +Y+G + + N LE K F+RG
Sbjct: 14 PSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGDAFVRG 73
Query: 68 SKVRFM 73
+ V ++
Sbjct: 74 NNVMYI 79
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=lsm6 PE=3 SV=2
Length = 80
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQ-LEHVFIR 66
P L E G VTV+L SG +Y+G + + N LE + DGK+ + FIR
Sbjct: 12 PSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALER-SEEFVDGKLKRSYGDAFIR 70
Query: 67 GSKVRFM 73
G+ V ++
Sbjct: 71 GNNVLYI 77
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1
SV=1
Length = 95
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 20 VTVELKSGELYRGSMVECEDNWNCQLENITYT--AKDGKVSQLEHVFIRGSKVRF----- 72
V VELK+ +G++ + N +L+NI+ T K + + ++FIRGS VR+
Sbjct: 15 VVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNK 74
Query: 73 -MVIPDMLKNAP 83
MV ++L++A
Sbjct: 75 NMVDTNLLQDAT 86
>sp|Q4PG71|LSM6_USTMA U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=LSM6 PE=3 SV=2
Length = 85
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQLEHVF 64
G P L G V V L SG YRG ++ C D + N LE K + F
Sbjct: 13 GSPNDFLKGVIGKNVNVRLNSGIDYRG-VLSCLDGYMNIALEQTVEYVDGIKKNSYGDAF 71
Query: 65 IRGSKVRFMV 74
IRG+ V ++
Sbjct: 72 IRGNNVMYIT 81
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRG 67
P+ +L+EA V V LK G +RG + + + N L+N ++ +L + +RG
Sbjct: 5 PLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASRKLGTIIVRG 64
Query: 68 SKVRFM 73
V ++
Sbjct: 65 DTVVYV 70
>sp|P90587|WD66_PHYPO 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1
Length = 601
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 26 SGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLK----N 81
S LY GS WN + A G S + ++G+K+ + + D + N
Sbjct: 332 SKALYSGSYDGVILQWNLETGIAVPIAGTGHTSSVTQAVVQGNKLVSVSVDDTTRFTPLN 391
Query: 82 APMFKRLDARIKGKSSSIGVGRGRAVA 108
P + A++ + S+ V +G+ +A
Sbjct: 392 PPQYAAQGAKLDSQPQSVAVAQGKDIA 418
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKV-SQLEHVFIR 66
P+ +L+ A V V LK +RG + + + N L+N +DG+V S+ V IR
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDN-AEELRDGEVVSKFSSVVIR 63
Query: 67 GSKVRFM 73
G V ++
Sbjct: 64 GDNVVYV 70
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRG 67
P+ +L+ A V V LK +RG + + + N L+N + VS+ V IRG
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRG 64
Query: 68 SKVRFM 73
V ++
Sbjct: 65 DNVVYV 70
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1
Length = 99
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQLEHVF 64
G P L G V V L SG YRG ++ C D + N LE ++ F
Sbjct: 26 GSPTDFLKGVVGKRVIVRLTSGVDYRG-LLSCLDGYMNIALEQTEEHVNGVVTNRYGDAF 84
Query: 65 IRGSKVRFM 73
IRG+ V ++
Sbjct: 85 IRGNNVLYI 93
>sp|P55849|DSC1_MOUSE Desmocollin-1 OS=Mus musculus GN=Dsc1 PE=1 SV=2
Length = 886
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 8 PVKLLHEASG----------HVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKV 57
PVK++ G V E SGE R MV EDNW ++ IT + KV
Sbjct: 474 PVKVIQSKDGLPAGQELLGYKAVDPETSSGEGLRYEMVGDEDNW-FEINKITGDLRTVKV 532
Query: 58 SQLEHVFIRGSKVRFMVI 75
E F++ ++ V+
Sbjct: 533 LDRESKFVKNNQYNISVV 550
>sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6
PE=3 SV=1
Length = 80
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQ 59
MS P L + G V V+L SG YRG ++ C D + N LE ++
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRG-VLACLDGYMNIALEQTEEYVNGQLKNK 59
Query: 60 LEHVFIRGSKVRFM 73
FIRG+ V ++
Sbjct: 60 YGDAFIRGNNVLYI 73
>sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6
PE=1 SV=1
Length = 80
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNW-NCQLENITYTAKDGKVSQ 59
MS P L + G V V+L SG YRG ++ C D + N LE ++
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRG-VLACLDGYMNIALEQTEEYVNGQLKNK 59
Query: 60 LEHVFIRGSKVRFM 73
FIRG+ V ++
Sbjct: 60 YGDAFIRGNNVLYI 73
>sp|B2SPN6|SAHH_XANOP Adenosylhomocysteinase OS=Xanthomonas oryzae pv. oryzae (strain
PXO99A) GN=ahcY PE=3 SV=1
Length = 480
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 38 EDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMV 74
E+ W+C L+ +T+T DG ++ E V G V ++
Sbjct: 114 EEYWDCTLDALTFTLPDGTLTGPELVVDDGGDVTLLI 150
>sp|Q2NZE3|SAHH_XANOM Adenosylhomocysteinase OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=ahcY PE=3 SV=1
Length = 480
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 38 EDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMV 74
E+ W+C L+ +T+T DG ++ E V G V ++
Sbjct: 114 EEYWDCTLDALTFTLPDGTLTGPELVVDDGGDVTLLI 150
>sp|Q3BXC6|SAHH_XANC5 Adenosylhomocysteinase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=ahcY PE=3 SV=1
Length = 480
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 38 EDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMV 74
E+ W+C L+ +T+T DG ++ E V G V ++
Sbjct: 114 EEYWDCTLDALTFTLPDGTLTGPELVVDDGGDVTLLI 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,534,547
Number of Sequences: 539616
Number of extensions: 1715359
Number of successful extensions: 6045
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5935
Number of HSP's gapped (non-prelim): 107
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)