Query 032863
Match_columns 132
No_of_seqs 180 out of 1178
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:55:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9a_D Small nuclear ribonucle 100.0 6E-38 2E-42 229.8 10.9 120 5-128 3-122 (126)
2 1b34_A Protein (small nuclear 100.0 1.9E-34 6.4E-39 208.9 10.3 89 7-95 2-90 (119)
3 1d3b_A Protein (small nuclear 100.0 1.8E-28 6E-33 164.4 11.1 73 5-77 3-75 (75)
4 4emh_A Probable U6 snRNA-assoc 100.0 2.1E-28 7.1E-33 174.1 9.5 86 5-90 14-100 (105)
5 3s6n_F Small nuclear ribonucle 99.9 8.1E-24 2.8E-28 145.2 10.2 78 1-80 1-79 (86)
6 1i4k_A Putative snRNP SM-like 99.9 1.6E-23 5.5E-28 140.0 10.4 74 6-79 3-76 (77)
7 1h64_1 SnRNP SM-like protein; 99.9 1.9E-23 6.5E-28 139.1 10.1 73 6-78 3-75 (75)
8 1th7_A SnRNP-2, small nuclear 99.9 2.1E-23 7.1E-28 141.0 10.2 78 1-78 3-80 (81)
9 1ljo_A Archaeal SM-like protei 99.9 3.8E-23 1.3E-27 138.4 10.7 74 5-78 3-77 (77)
10 1i8f_A Putative snRNP SM-like 99.9 8.1E-23 2.8E-27 138.2 9.9 72 5-77 9-80 (81)
11 4emk_B U6 snRNA-associated SM- 99.9 8.5E-23 2.9E-27 136.3 8.9 72 6-77 3-74 (75)
12 1n9r_A SMF, small nuclear ribo 99.9 1E-22 3.5E-27 141.7 7.9 74 5-78 19-93 (93)
13 1mgq_A SM-like protein; LSM, R 99.9 5.3E-22 1.8E-26 134.9 9.9 72 4-75 12-83 (83)
14 3s6n_G Small nuclear ribonucle 99.9 1.1E-21 3.7E-26 131.4 8.1 76 1-79 1-76 (76)
15 4emk_A U6 snRNA-associated SM- 99.9 3.6E-21 1.2E-25 134.3 10.9 73 4-76 17-90 (94)
16 4emg_A Probable U6 snRNA-assoc 99.8 1.6E-20 5.5E-25 130.4 9.9 75 3-77 5-92 (93)
17 1m5q_A SMAP3, small nuclear ri 99.8 2.1E-20 7.2E-25 137.2 9.0 79 9-91 2-80 (130)
18 3s6n_E Small nuclear ribonucle 99.8 1.2E-19 4.2E-24 126.0 7.9 76 2-77 11-91 (92)
19 3bw1_A SMX4 protein, U6 snRNA- 99.8 3.8E-19 1.3E-23 124.0 9.9 78 5-82 8-92 (96)
20 2fwk_A U6 snRNA-associated SM- 99.8 2.2E-19 7.6E-24 129.9 7.2 76 4-79 25-115 (121)
21 1d3b_B Protein (small nuclear 99.8 6.4E-19 2.2E-23 121.0 6.7 73 7-79 4-86 (91)
22 1b34_B Protein (small nuclear 99.8 3.3E-18 1.1E-22 123.2 9.3 74 5-78 25-114 (118)
23 4emk_C U6 snRNA-associated SM- 99.7 3.5E-17 1.2E-21 117.4 9.7 74 6-79 22-102 (113)
24 3pgw_B SM B; protein-RNA compl 99.7 3.4E-16 1.2E-20 124.3 10.4 76 7-82 4-89 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.7 4.3E-08 1.5E-12 67.2 7.5 68 7-81 8-76 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.1 0.0059 2E-07 41.7 9.2 63 15-77 11-83 (88)
27 4a53_A EDC3; RNA binding prote 96.8 0.0038 1.3E-07 45.2 6.6 54 12-75 7-61 (125)
28 2vc8_A Enhancer of mRNA-decapp 96.6 0.0063 2.2E-07 41.2 6.2 60 13-75 5-66 (84)
29 1kq1_A HFQ, HOST factor for Q 96.4 0.008 2.8E-07 40.0 5.9 67 1-79 1-69 (77)
30 2fb7_A SM-like protein, LSM-14 96.4 0.0077 2.6E-07 41.7 5.7 67 11-77 13-89 (95)
31 1y96_B Gemin7, SIP3, GEM-assoc 96.3 0.031 1.1E-06 37.9 8.5 63 8-75 20-83 (85)
32 2ylb_A Protein HFQ; RNA-bindin 96.3 0.028 9.6E-07 37.1 8.0 66 1-79 3-70 (74)
33 1u1s_A HFQ protein; SM-like ba 96.3 0.0068 2.3E-07 40.9 5.0 67 1-80 1-69 (82)
34 2y90_A Protein HFQ; RNA-bindin 95.7 0.017 5.8E-07 40.5 5.0 67 1-80 3-71 (104)
35 2qtx_A Uncharacterized protein 95.6 0.02 6.7E-07 37.7 4.7 29 16-44 24-52 (71)
36 3ahu_A Protein HFQ; SM-like mo 95.6 0.025 8.5E-07 37.8 5.2 60 9-80 13-74 (78)
37 3hfo_A SSR3341 protein; HFQ, S 94.8 0.099 3.4E-06 34.2 6.3 61 3-74 4-67 (70)
38 3sb2_A Protein HFQ; SM-like, R 94.0 0.17 5.9E-06 33.7 6.2 63 6-81 7-71 (79)
39 3hfn_A ASL2047 protein; HFQ, S 93.6 0.27 9.3E-06 32.2 6.5 60 4-74 7-69 (72)
40 1ycy_A Conserved hypothetical 92.1 1.5 5.3E-05 28.2 8.5 62 9-75 8-69 (71)
41 2rm4_A CG6311-PB, DM EDC3; enh 91.2 1.6 5.4E-05 30.3 8.1 59 14-76 9-70 (103)
42 1ib8_A Conserved protein SP14. 84.3 0.91 3.1E-05 33.5 3.7 38 3-40 87-131 (164)
43 3rux_A BIRA bifunctional prote 79.0 3 0.0001 32.7 5.2 33 15-47 222-254 (270)
44 3by7_A Uncharacterized protein 78.5 11 0.00037 25.9 7.3 55 21-77 7-76 (100)
45 2eay_A Biotin [acetyl-COA-carb 73.9 2.6 8.8E-05 32.2 3.4 46 15-67 186-232 (233)
46 2ej9_A Putative biotin ligase; 70.5 13 0.00043 28.4 6.6 32 15-47 190-221 (237)
47 3uby_A DNA-3-methyladenine gly 68.7 6.7 0.00023 30.4 4.7 34 8-41 16-49 (219)
48 3v4h_A Hypothetical protein; s 67.8 14 0.00047 27.6 6.2 69 6-78 89-164 (185)
49 1bia_A BIRA bifunctional prote 66.7 12 0.00042 29.6 6.0 46 15-66 271-317 (321)
50 4hcz_A PHD finger protein 1; p 66.4 8.7 0.0003 24.0 4.0 25 16-40 6-30 (58)
51 2dxu_A Biotin--[acetyl-COA-car 61.6 5.2 0.00018 30.6 2.8 30 16-47 188-217 (235)
52 1nvp_D Transcription initiatio 61.5 27 0.00093 24.1 6.3 29 24-52 51-82 (108)
53 1nh2_D Transcription initiatio 58.8 29 0.00099 24.5 6.1 30 24-53 55-87 (121)
54 2e12_A SM-like motif, hypothet 56.8 11 0.00038 25.7 3.5 26 11-36 21-47 (101)
55 1sg5_A ORF, hypothetical prote 55.4 5.6 0.00019 26.5 1.8 24 13-36 21-44 (86)
56 2e5p_A Protein PHF1, PHD finge 55.1 18 0.0006 23.3 4.0 24 16-39 12-35 (68)
57 2m0o_A PHD finger protein 1; t 52.9 6.6 0.00023 26.0 1.8 26 15-40 28-53 (79)
58 2eqj_A Metal-response element- 49.7 24 0.00082 22.5 4.0 24 16-39 16-39 (66)
59 3rkx_A Biotin-[acetyl-COA-carb 48.8 29 0.00099 27.6 5.4 32 15-47 277-308 (323)
60 2xk0_A Polycomb protein PCL; t 48.8 29 0.00098 22.3 4.3 22 15-36 17-38 (69)
61 3he1_A Major exported HCP3 pro 48.4 20 0.00069 27.0 4.1 73 6-81 99-184 (195)
62 2e5q_A PHD finger protein 19; 47.4 22 0.00075 22.5 3.5 25 16-40 10-34 (63)
63 1y12_A Hypothetical protein PA 45.1 66 0.0022 23.1 6.4 70 6-78 68-143 (165)
64 3p8d_A Medulloblastoma antigen 45.1 56 0.0019 20.6 5.7 25 16-40 9-33 (67)
65 2equ_A PHD finger protein 20-l 43.9 60 0.0021 20.6 5.3 25 16-40 12-36 (74)
66 1zq1_A Glutamyl-tRNA(Gln) amid 42.5 19 0.00064 30.5 3.4 38 9-46 4-52 (438)
67 3eaa_A EVPC; T6SS, unknown fun 40.9 16 0.00053 26.4 2.4 69 6-78 66-141 (163)
68 2xzm_7 Plectin/S10 domain cont 40.6 5.4 0.00018 29.7 -0.2 17 72-88 79-96 (162)
69 2qqr_A JMJC domain-containing 39.6 41 0.0014 23.6 4.3 24 15-38 7-30 (118)
70 3qii_A PHD finger protein 20; 39.5 81 0.0028 20.9 5.6 26 15-40 23-48 (85)
71 2d6f_A Glutamyl-tRNA(Gln) amid 35.7 37 0.0013 28.6 4.2 38 8-46 7-52 (435)
72 3ggm_A Uncharacterized protein 34.9 67 0.0023 19.6 4.5 36 41-76 4-39 (81)
73 1o9y_A HRCQ2; secretory protei 33.2 64 0.0022 20.6 4.2 34 15-48 47-80 (84)
74 2vqe_L 30S ribosomal protein S 32.3 30 0.001 24.9 2.7 63 14-93 50-119 (135)
75 3bfm_A Biotin protein ligase-l 29.8 69 0.0024 24.0 4.5 28 15-47 192-219 (235)
76 3uep_A YSCQ-C, type III secret 29.2 71 0.0024 21.1 4.0 33 16-48 52-84 (96)
77 2qs8_A XAA-Pro dipeptidase; am 25.8 1E+02 0.0034 24.0 5.0 39 36-74 2-41 (418)
78 3ooq_A Amidohydrolase; structu 25.5 94 0.0032 24.1 4.8 34 41-75 5-38 (396)
79 3kl9_A PEPA, glutamyl aminopep 22.3 66 0.0023 25.8 3.3 25 13-37 95-119 (355)
80 3mkv_A Putative amidohydrolase 22.0 1.5E+02 0.0053 21.1 5.0 33 42-74 5-38 (426)
81 1o6a_A Putative flagellar moto 21.3 1E+02 0.0035 20.1 3.6 32 17-48 53-84 (96)
82 3j20_E 30S ribosomal protein S 21.2 70 0.0024 25.0 3.1 38 32-69 197-236 (243)
83 3tee_A Flagella basal BODY P-r 20.2 78 0.0027 23.9 3.2 22 15-36 169-190 (219)
No 1
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=100.00 E-value=6e-38 Score=229.79 Aligned_cols=120 Identities=56% Similarity=1.027 Sum_probs=85.1
Q ss_pred CCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcccccccc
Q 032863 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPM 84 (132)
Q Consensus 5 i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~l~~ap~ 84 (132)
++.|++||++++|++|+||||||++|+|+|.+||+||||+|+||+++.++++..+++++||||++|+||++||+++++|+
T Consensus 3 ~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~~~~ 82 (126)
T 2y9a_D 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPM 82 (126)
T ss_dssp -CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSSSSH
T ss_pred cccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccchHH
Confidence 78999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred hhchhhhhcCCCCCcccccchhHHHHHHHhhcCCCCCCCCCCCC
Q 032863 85 FKRLDARIKGKSSSIGVGRGRAVAMRAKAAAAGRGAAPGRGVVP 128 (132)
Q Consensus 85 l~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~~~g~~~~~ 128 (132)
|+++.++.|++ +.++|++++.+++++++|+|.+.|||.++
T Consensus 83 l~~~~~k~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 122 (126)
T 2y9a_D 83 LKSMKNKNQGS----GAGRGKAAILKAQVAARGRGRGMGRGNIF 122 (126)
T ss_dssp HHHHHHHHC-----------------------------------
T ss_pred hhhhhhccccc----ccCcCchhhhhcccccCCCCCCCCCCCCC
Confidence 99987775543 35689999888876666666555555444
No 2
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=100.00 E-value=1.9e-34 Score=208.86 Aligned_cols=89 Identities=29% Similarity=0.512 Sum_probs=78.2
Q ss_pred cHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcccccccchh
Q 032863 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFK 86 (132)
Q Consensus 7 ~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~l~~ap~l~ 86 (132)
.|++||++++|++|+|||+||.+|+|+|.+||+||||+|+||+++..+++..+++++||||++|+||++||+|+.+|+|+
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l~~d~~l~ 81 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLV 81 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTCCHHHHTC
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccccccchhHh
Confidence 69999999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred chhhhhcCC
Q 032863 87 RLDARIKGK 95 (132)
Q Consensus 87 ~~~~~~~~~ 95 (132)
++.++.|.+
T Consensus 82 ~~~pK~k~~ 90 (119)
T 1b34_A 82 DVEPKVKSK 90 (119)
T ss_dssp ---------
T ss_pred hhccccccc
Confidence 988886654
No 3
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.96 E-value=1.8e-28 Score=164.42 Aligned_cols=73 Identities=59% Similarity=1.136 Sum_probs=70.8
Q ss_pred CCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCc
Q 032863 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPD 77 (132)
Q Consensus 5 i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd 77 (132)
++.|++||++++|++|+||||||++|+|+|.+||+|||++|+||+++.++++..+++++||||++|+||++||
T Consensus 3 ~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp -CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred ccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 7899999999999999999999999999999999999999999999998889999999999999999999997
No 4
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2.1e-28 Score=174.14 Aligned_cols=86 Identities=28% Similarity=0.541 Sum_probs=57.5
Q ss_pred CCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCC-ceeeeeeEEEeCCeEEEEecCccccccc
Q 032863 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDMLKNAP 83 (132)
Q Consensus 5 i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg-~~~~l~~vfIRGs~Ir~I~lpd~l~~ap 83 (132)
...|++||++++|++|+|||+||++|+|+|.+||+||||+|+||+++.+++ +...++.+||||++|+||++||++.++|
T Consensus 14 ~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d~p 93 (105)
T 4emh_A 14 PMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQV 93 (105)
T ss_dssp ------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC--------
T ss_pred CCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhhhh
Confidence 468999999999999999999999999999999999999999999998888 5889999999999999999999999999
Q ss_pred chhchhh
Q 032863 84 MFKRLDA 90 (132)
Q Consensus 84 ~l~~~~~ 90 (132)
+|++..+
T Consensus 94 ~~~~~~~ 100 (105)
T 4emh_A 94 AKQQAQQ 100 (105)
T ss_dssp -------
T ss_pred hhhhhcc
Confidence 9998653
No 5
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=8.1e-24 Score=145.16 Aligned_cols=78 Identities=31% Similarity=0.349 Sum_probs=68.6
Q ss_pred CCCCCCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCC-ceeeeeeEEEeCCeEEEEecCccc
Q 032863 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDML 79 (132)
Q Consensus 1 ms~~i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg-~~~~l~~vfIRGs~Ir~I~lpd~l 79 (132)
||. ...|+.||++++|++|+|+|+||.+|+|+|.+||+|||++|+||+++. ++ +..+++.+||||++|+||++||.-
T Consensus 1 ms~-~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 1 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI-DGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp --C-CCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEESSEEECGGGEEEEEECC--
T ss_pred CCc-CcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc-CCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 674 578999999999999999999999999999999999999999999875 45 578999999999999999999875
Q ss_pred c
Q 032863 80 K 80 (132)
Q Consensus 80 ~ 80 (132)
.
T Consensus 79 ~ 79 (86)
T 3s6n_F 79 E 79 (86)
T ss_dssp -
T ss_pred c
Confidence 4
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.90 E-value=1.6e-23 Score=139.98 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=69.6
Q ss_pred CcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCccc
Q 032863 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDML 79 (132)
Q Consensus 6 ~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~l 79 (132)
..|+.+|++++|++|+|+|+||.+|.|+|.+||+|||++|+||+++..+++...++.+||||++|+||++||..
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC--
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCCC
Confidence 57999999999999999999999999999999999999999999998777889999999999999999999863
No 7
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.90 E-value=1.9e-23 Score=139.12 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=68.5
Q ss_pred CcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcc
Q 032863 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 6 ~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
..|+.+|++++|++|+|+|+||.+|+|+|.+||+|||++|+||+++..++....++.+||||++|+||+.||+
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 5799999999999999999999999999999999999999999999877788999999999999999999874
No 8
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.90 E-value=2.1e-23 Score=141.05 Aligned_cols=78 Identities=24% Similarity=0.302 Sum_probs=72.5
Q ss_pred CCCCCCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcc
Q 032863 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 1 ms~~i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
|+.....|+.+|++++|++|+|+|+||.+|.|+|.+||+|||++|+||+++..++....++.+||||++|.||++||.
T Consensus 3 m~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 3 MNFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp CCTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred ccccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 666667899999999999999999999999999999999999999999999888888999999999999999999874
No 9
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.90 E-value=3.8e-23 Score=138.39 Aligned_cols=74 Identities=22% Similarity=0.377 Sum_probs=68.8
Q ss_pred CCcHHHHHHhhCCCEEEEEeCCC-cEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcc
Q 032863 5 LGIPVKLLHEASGHVVTVELKSG-ELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 5 i~~P~~lL~~~~g~~V~VELknG-~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
.-.|+.+|+++++++|+|+|+|| .+|+|+|.+||+|||++|+||+++..+++...++.+||||++|+||++||+
T Consensus 3 m~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 3 MVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred ccchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 35899999999999999999999 999999999999999999999999877778999999999999999999984
No 10
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.89 E-value=8.1e-23 Score=138.25 Aligned_cols=72 Identities=24% Similarity=0.318 Sum_probs=68.1
Q ss_pred CCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCc
Q 032863 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPD 77 (132)
Q Consensus 5 i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd 77 (132)
...|+.+|+++++++|+|+|+||.+|.|+|.+||+|||++|+||+++ .++....++.+||||++|.||++||
T Consensus 9 ~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 9 FATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp -CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred ccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999 5667899999999999999999987
No 11
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.88 E-value=8.5e-23 Score=136.35 Aligned_cols=72 Identities=26% Similarity=0.383 Sum_probs=66.7
Q ss_pred CcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCc
Q 032863 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPD 77 (132)
Q Consensus 6 ~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd 77 (132)
..|+.+|++++|++|+|+|+||.+|+|+|.+||+|||++|+||+++..+++...++.+||||++|+||+..|
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecC
Confidence 689999999999999999999999999999999999999999998875556889999999999999998765
No 12
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.88 E-value=1e-22 Score=141.73 Aligned_cols=74 Identities=26% Similarity=0.309 Sum_probs=63.6
Q ss_pred CCcHHHHHHhhCCCEEEEEeCCC-cEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcc
Q 032863 5 LGIPVKLLHEASGHVVTVELKSG-ELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 5 i~~P~~lL~~~~g~~V~VELknG-~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
...|+.+|++++|++|+|+|+|| ++|+|+|.+||+|||++|+||+++..+++...++.+||||++|+||++|+.
T Consensus 19 ~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~~ 93 (93)
T 1n9r_A 19 PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELPN 93 (93)
T ss_dssp -------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECCC
T ss_pred cCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCCC
Confidence 46899999999999999999999 999999999999999999999999766678899999999999999999873
No 13
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.87 E-value=5.3e-22 Score=134.87 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=68.0
Q ss_pred CCCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEec
Q 032863 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75 (132)
Q Consensus 4 ~i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 75 (132)
....|+.+|++++|++|+|+|+||.+|.|+|.+||+|||++|+||+++..++....++.+||||++|+||+.
T Consensus 12 ~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 12 NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp CTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEC
T ss_pred cCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEEC
Confidence 357899999999999999999999999999999999999999999999877788999999999999999973
No 14
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.86 E-value=1.1e-21 Score=131.39 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=54.0
Q ss_pred CCCCCCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCccc
Q 032863 1 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDML 79 (132)
Q Consensus 1 ms~~i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~l 79 (132)
||.. |..+|++++|++|+|+|+||.+|+|+|.+||+|||++|+||+++..+++...++.+||||++|.||+..|.+
T Consensus 1 ms~~---~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (76)
T 3s6n_G 1 MSKA---HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76 (76)
T ss_dssp ----------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC----
T ss_pred CCCc---chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccCC
Confidence 6643 778999999999999999999999999999999999999999998788889999999999999999987753
No 15
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.86 E-value=3.6e-21 Score=134.35 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=66.5
Q ss_pred CCCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEc-cCCceeeeeeEEEeCCeEEEEecC
Q 032863 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTA-KDGKVSQLEHVFIRGSKVRFMVIP 76 (132)
Q Consensus 4 ~i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~-~dg~~~~l~~vfIRGs~Ir~I~lp 76 (132)
....|++||+++++++|+|+|+||.+|+|+|.+||+|||++|+||+++. .+++...++.+||||++|.||+..
T Consensus 17 ~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 17 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp ---CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEEC
T ss_pred ccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeC
Confidence 4578999999999999999999999999999999999999999999987 556788999999999999999864
No 16
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.6e-20 Score=130.44 Aligned_cols=75 Identities=19% Similarity=0.330 Sum_probs=64.8
Q ss_pred CCCCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccC----C---------ceeeeeeEEEeCCe
Q 032863 3 RSLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKD----G---------KVSQLEHVFIRGSK 69 (132)
Q Consensus 3 ~~i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~d----g---------~~~~l~~vfIRGs~ 69 (132)
.+++.|+.||++++|++|+|+|++|.+|.|+|.+||+|||++|+||+++..+ + ....++.+||||++
T Consensus 5 ~~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~n 84 (93)
T 4emg_A 5 QAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDS 84 (93)
T ss_dssp ----CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGG
T ss_pred cccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCe
Confidence 4579999999999999999999999999999999999999999999997642 3 35789999999999
Q ss_pred EEEEecCc
Q 032863 70 VRFMVIPD 77 (132)
Q Consensus 70 Ir~I~lpd 77 (132)
|.+|..|-
T Consensus 85 Vv~I~p~~ 92 (93)
T 4emg_A 85 VILIAPPR 92 (93)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 99999863
No 17
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.82 E-value=2.1e-20 Score=137.25 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=72.9
Q ss_pred HHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcccccccchhch
Q 032863 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRL 88 (132)
Q Consensus 9 ~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~l~~ap~l~~~ 88 (132)
+.+|++++|++|+|+|+||.+|+|+|.+||+|||++|+||+++. + .+++.+||||++|+||++||...++++|++.
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~--~--~~lg~v~IRG~nI~~I~~~d~~~d~~~f~~~ 77 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA--G--EKFNRVFIMYRYIVHIDSTERRIDMREFAKQ 77 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT--C--CEEEEEEECGGGEEEEEECCCCCCHHHHHHH
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc--C--CEeceEEEeCCeEEEEEcCCcccCHHHHHHH
Confidence 47899999999999999999999999999999999999999874 2 5789999999999999999999999999987
Q ss_pred hhh
Q 032863 89 DAR 91 (132)
Q Consensus 89 ~~~ 91 (132)
..+
T Consensus 78 ~~r 80 (130)
T 1m5q_A 78 AEK 80 (130)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 18
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.80 E-value=1.2e-19 Score=126.05 Aligned_cols=76 Identities=11% Similarity=0.254 Sum_probs=67.4
Q ss_pred CCCCCcHHHHHHhhCCCEEEEEe----CCCcEEEEEEEeeCCceeeEEeeeEEEccC-CceeeeeeEEEeCCeEEEEecC
Q 032863 2 SRSLGIPVKLLHEASGHVVTVEL----KSGELYRGSMVECEDNWNCQLENITYTAKD-GKVSQLEHVFIRGSKVRFMVIP 76 (132)
Q Consensus 2 s~~i~~P~~lL~~~~g~~V~VEL----knG~~y~G~L~~vD~~MNi~L~dv~~t~~d-g~~~~l~~vfIRGs~Ir~I~lp 76 (132)
.+.+..|+.||.++++++|.|++ ++|.+|.|+|.+||+|||++|+||+++..+ +....++.+||||++|.||..+
T Consensus 11 ~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~ 90 (92)
T 3s6n_E 11 QKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90 (92)
T ss_dssp ---CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC
T ss_pred ceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeC
Confidence 34467899999999999999999 999999999999999999999999998744 4678899999999999999987
Q ss_pred c
Q 032863 77 D 77 (132)
Q Consensus 77 d 77 (132)
|
T Consensus 91 ~ 91 (92)
T 3s6n_E 91 S 91 (92)
T ss_dssp -
T ss_pred C
Confidence 6
No 19
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.8e-19 Score=123.96 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=67.0
Q ss_pred CCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccC------C-ceeeeeeEEEeCCeEEEEecCc
Q 032863 5 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKD------G-KVSQLEHVFIRGSKVRFMVIPD 77 (132)
Q Consensus 5 i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~d------g-~~~~l~~vfIRGs~Ir~I~lpd 77 (132)
...|+.+|++++|++|.|+|++|.+|.|+|.+||.|||++|+||+++..+ + ....++.+||||++|.+|..+|
T Consensus 8 ~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d 87 (96)
T 3bw1_A 8 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPS 87 (96)
T ss_dssp CCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC
T ss_pred hhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecC
Confidence 57899999999999999999999999999999999999999999987543 2 3577999999999999999988
Q ss_pred ccccc
Q 032863 78 MLKNA 82 (132)
Q Consensus 78 ~l~~a 82 (132)
....+
T Consensus 88 ~~~d~ 92 (96)
T 3bw1_A 88 EDDDG 92 (96)
T ss_dssp -----
T ss_pred ccccc
Confidence 76543
No 20
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.78 E-value=2.2e-19 Score=129.88 Aligned_cols=76 Identities=20% Similarity=0.365 Sum_probs=67.3
Q ss_pred CCCcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccC---------C-c-----eeeeeeEEEeCC
Q 032863 4 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKD---------G-K-----VSQLEHVFIRGS 68 (132)
Q Consensus 4 ~i~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~d---------g-~-----~~~l~~vfIRGs 68 (132)
....|+.||+++++++|+|+|++|.+|.|+|.+||+||||+|+||+++..+ + . ...++.+||||+
T Consensus 25 ~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~ 104 (121)
T 2fwk_A 25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104 (121)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred cccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCC
Confidence 357999999999999999999999999999999999999999999987743 4 2 578999999999
Q ss_pred eEEEEecCccc
Q 032863 69 KVRFMVIPDML 79 (132)
Q Consensus 69 ~Ir~I~lpd~l 79 (132)
+|.||...+.-
T Consensus 105 nVv~I~~~~~~ 115 (121)
T 2fwk_A 105 NVAMLVPGGDP 115 (121)
T ss_dssp GEEEEESSSCC
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 21
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.76 E-value=6.4e-19 Score=120.99 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=63.1
Q ss_pred cHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEcc---------C-CceeeeeeEEEeCCeEEEEecC
Q 032863 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAK---------D-GKVSQLEHVFIRGSKVRFMVIP 76 (132)
Q Consensus 7 ~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~---------d-g~~~~l~~vfIRGs~Ir~I~lp 76 (132)
.|..+|++++|++|.|+|+||.+|.|+|.+||.|||++|+||+++.. + .....++.+||||++|.+|+++
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~ 83 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEE
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcC
Confidence 46788999999999999999999999999999999999999998641 1 2467899999999999999998
Q ss_pred ccc
Q 032863 77 DML 79 (132)
Q Consensus 77 d~l 79 (132)
+.-
T Consensus 84 ~~~ 86 (91)
T 1d3b_B 84 GPP 86 (91)
T ss_dssp ECC
T ss_pred CCC
Confidence 754
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.75 E-value=3.3e-18 Score=123.16 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=63.5
Q ss_pred CCcHHHHHHhhC--CCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccC----Cc----------eeeeeeEEEeCC
Q 032863 5 LGIPVKLLHEAS--GHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKD----GK----------VSQLEHVFIRGS 68 (132)
Q Consensus 5 i~~P~~lL~~~~--g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~d----g~----------~~~l~~vfIRGs 68 (132)
...|+.||+.++ +++|.|+|+||..|.|+|.+||+|||++|+||+++... ++ ...++.+||||+
T Consensus 25 ~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 104 (118)
T 1b34_B 25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGD 104 (118)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGG
T ss_pred ccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCC
Confidence 458999999999 59999999999999999999999999999999987522 11 235999999999
Q ss_pred eEEEEecCcc
Q 032863 69 KVRFMVIPDM 78 (132)
Q Consensus 69 ~Ir~I~lpd~ 78 (132)
+|.||..++.
T Consensus 105 nVv~I~~~~~ 114 (118)
T 1b34_B 105 SVIVVLRNPL 114 (118)
T ss_dssp GEEEEEECCC
T ss_pred EEEEEEeCch
Confidence 9999999876
No 23
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.71 E-value=3.5e-17 Score=117.41 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=56.9
Q ss_pred CcHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccC-------CceeeeeeEEEeCCeEEEEecCcc
Q 032863 6 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKD-------GKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 6 ~~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~d-------g~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
..|+..|.+++++.|.|+|++|.+|.|+|.+||.||||+|+||+++..+ .....++.+||||++|.+|..+|.
T Consensus 22 ke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 101 (113)
T 4emk_C 22 KESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDG 101 (113)
T ss_dssp ----------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-
T ss_pred cchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCc
Confidence 3568899999999999999999999999999999999999999998654 247889999999999999999874
Q ss_pred c
Q 032863 79 L 79 (132)
Q Consensus 79 l 79 (132)
-
T Consensus 102 ~ 102 (113)
T 4emk_C 102 S 102 (113)
T ss_dssp -
T ss_pred c
Confidence 3
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.66 E-value=3.4e-16 Score=124.26 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=65.9
Q ss_pred cHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEcc----------CCceeeeeeEEEeCCeEEEEecC
Q 032863 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAK----------DGKVSQLEHVFIRGSKVRFMVIP 76 (132)
Q Consensus 7 ~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~----------dg~~~~l~~vfIRGs~Ir~I~lp 76 (132)
.+-..|++++|++|.|+|+||.+|.|+|.+||+||||+|+||+++.. ..+..+++.+||||++|.+|.+.
T Consensus 4 ~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve 83 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (231)
T ss_pred CchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEec
Confidence 36678999999999999999999999999999999999999999752 12578899999999999999997
Q ss_pred cccccc
Q 032863 77 DMLKNA 82 (132)
Q Consensus 77 d~l~~a 82 (132)
+--..+
T Consensus 84 ~pPp~d 89 (231)
T 3pgw_B 84 GPPPKD 89 (231)
T ss_pred CCCCCC
Confidence 654433
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.72 E-value=4.3e-08 Score=67.22 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=57.2
Q ss_pred cHHHHHHhhCCCEEEEEeCCCcEEEEEEEeeC-CceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCccccc
Q 032863 7 IPVKLLHEASGHVVTVELKSGELYRGSMVECE-DNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKN 81 (132)
Q Consensus 7 ~P~~lL~~~~g~~V~VELknG~~y~G~L~~vD-~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~l~~ 81 (132)
.|+ -|+.++|+.|.|.|.||.+|+|.|.++| ...|++|.|+ ..+++ +..++|.|+.|..|.+-+.-+.
T Consensus 8 ~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---~~~~~---~~~~iI~G~aI~eI~v~~~~~~ 76 (86)
T 1y96_A 8 GPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---LEDGS---MSVTGIMGHAVQTVETMNEGDH 76 (86)
T ss_dssp CHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---CTTSC---EEEEEECGGGEEEEEEEECCCH
T ss_pred CHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---ccCCe---EEEEEEecceEEEEEEecchhH
Confidence 455 6789999999999999999999999999 8999999998 22333 4789999999999988555443
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.07 E-value=0.0059 Score=41.74 Aligned_cols=63 Identities=13% Similarity=0.297 Sum_probs=53.9
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeC-CceeeEEeeeEEEccCCc---------eeeeeeEEEeCCeEEEEecCc
Q 032863 15 ASGHVVTVELKSGELYRGSMVECE-DNWNCQLENITYTAKDGK---------VSQLEHVFIRGSKVRFMVIPD 77 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD-~~MNi~L~dv~~t~~dg~---------~~~l~~vfIRGs~Ir~I~lpd 77 (132)
++|+.|.+-.|++..|.|+|..+| +.--+.|+||.....+++ ..-++.+.-||+.|.-+.+-+
T Consensus 11 yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 11 ELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred ccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 689999999999999999999999 677899999998775552 234788999999999988744
No 27
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.78 E-value=0.0038 Score=45.17 Aligned_cols=54 Identities=20% Similarity=0.168 Sum_probs=41.2
Q ss_pred HHhhCCCEEEEEeCCCcEEEEEEEeeCC-ceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEec
Q 032863 12 LHEASGHVVTVELKSGELYRGSMVECED-NWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75 (132)
Q Consensus 12 L~~~~g~~V~VELknG~~y~G~L~~vD~-~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 75 (132)
+.+++|..|.|+|++|..|+|+|..||. .+=++|++|+.. ...|+.+.|.=+.+
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k~LtL~~~~a~~s----------~~~I~asdI~DLkV 61 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDSSNSILQLRLANDS----------TKSIVTKDIKDLRI 61 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEETTTTEEEEEETTTE----------EEEEEGGGEEEEEE
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecCCeeEEeccccccc----------cceeecccccceee
Confidence 4688999999999999999999999983 333444998421 12888888876555
No 28
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=96.57 E-value=0.0063 Score=41.24 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=50.3
Q ss_pred HhhCCCEEEEEeCCCc-EEEEEEEeeCC-ceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEec
Q 032863 13 HEASGHVVTVELKSGE-LYRGSMVECED-NWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75 (132)
Q Consensus 13 ~~~~g~~V~VELknG~-~y~G~L~~vD~-~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 75 (132)
.+.+|+.|.|+.+++. +|.|.|..+|. .-|+.|.+|. ++|-+.+..+|.++++-|.-+-+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~~~~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGVKCLVPEVTFRAGDITELKI 66 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTEECSSSEEEEEGGGCSEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCCCCCCcEEEEEecChhheEE
Confidence 3578999999999999 99999999994 5789999994 68866666789999987765554
No 29
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.40 E-value=0.008 Score=40.03 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=45.4
Q ss_pred CCCCCCcHHHHHHhhC--CCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcc
Q 032863 1 MSRSLGIPVKLLHEAS--GHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 1 ms~~i~~P~~lL~~~~--g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
|+.+..+=-.||+.+. ..+|+|.|.||..++|++.++|.|+=+.-. +|+ +.+|-=..|.+|.....
T Consensus 1 m~~~~~lQd~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~-------~g~-----~qLIYKhAISTI~p~~~ 68 (77)
T 1kq1_A 1 MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNS-------QGK-----QHLIYKHAISTYTVETE 68 (77)
T ss_dssp -----CHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEE-------TTE-----EEEEEGGGEEEEEC---
T ss_pred CCcccccHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEE-------CCe-----eEEEEeeeEEEEeECcc
Confidence 5544444557888886 999999999999999999999998755432 343 35677778888886554
Q ss_pred c
Q 032863 79 L 79 (132)
Q Consensus 79 l 79 (132)
+
T Consensus 69 v 69 (77)
T 1kq1_A 69 G 69 (77)
T ss_dssp -
T ss_pred c
Confidence 4
No 30
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.36 E-value=0.0077 Score=41.70 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHhhCCCEEEEEeCCCcEEEEEEEeeC-CceeeEEeeeEEEccCCc---------eeeeeeEEEeCCeEEEEecCc
Q 032863 11 LLHEASGHVVTVELKSGELYRGSMVECE-DNWNCQLENITYTAKDGK---------VSQLEHVFIRGSKVRFMVIPD 77 (132)
Q Consensus 11 lL~~~~g~~V~VELknG~~y~G~L~~vD-~~MNi~L~dv~~t~~dg~---------~~~l~~vfIRGs~Ir~I~lpd 77 (132)
--..++|+.|.+-.|++..|.|+|..+| +.--+.|+||.....+|+ ..-++.+..||+-|.-+.+-+
T Consensus 13 ~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 13 GGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp ---CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred ccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 3456899999999999999999999999 677899999987665542 244788999999999988854
No 31
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.33 E-value=0.031 Score=37.88 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=53.4
Q ss_pred HHHHHHhhCCCEEEEEeCCCcEEEEEEEeeC-CceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEec
Q 032863 8 PVKLLHEASGHVVTVELKSGELYRGSMVECE-DNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75 (132)
Q Consensus 8 P~~lL~~~~g~~V~VELknG~~y~G~L~~vD-~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 75 (132)
-+.+|..+.|++|.+.|+.+.++.|+...+| +..|+..+|.. .+=| ..++..+|++-|..+++
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~--TPiG---v~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ--TPIG---VQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC--CTTC---CEEEEEEEGGGEEEEEE
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC--CCcc---cchhhhhhcCCEEEEEe
Confidence 3678999999999999999999999999999 78888888752 2233 36789999999998876
No 32
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.31 E-value=0.028 Score=37.08 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=47.6
Q ss_pred CCCCCCcHHHHHHhhC--CCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcc
Q 032863 1 MSRSLGIPVKLLHEAS--GHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 1 ms~~i~~P~~lL~~~~--g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
|+.+..+=-.||+.+. ..+|+|.|.||..++|++.++|.|+=+.- ++ ...+|.=..|.+|.....
T Consensus 3 m~~~~~lQd~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~--------~~-----~~~LIYKhAIsTI~p~~~ 69 (74)
T 2ylb_A 3 MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK--------NT-----VSQMVYKHAISTVVPSRP 69 (74)
T ss_dssp -----CCHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE--------SS-----SEEEEEGGGEEEEEESSC
T ss_pred CccccccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE--------CC-----ceEEEEeeeEEEEeEccc
Confidence 4444455567888876 89999999999999999999999875443 11 246788888888887654
Q ss_pred c
Q 032863 79 L 79 (132)
Q Consensus 79 l 79 (132)
+
T Consensus 70 v 70 (74)
T 2ylb_A 70 V 70 (74)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.28 E-value=0.0068 Score=40.92 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=47.4
Q ss_pred CCCCCCcHHHHHHhhC--CCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcc
Q 032863 1 MSRSLGIPVKLLHEAS--GHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 1 ms~~i~~P~~lL~~~~--g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
|+.+..+=-.||+.+. ..+|+|-|.||..++|++.+||.|+=+.- + + .+.+|-=..|..|.....
T Consensus 1 m~~~~nlQd~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~-~------~------~qqLVYKHAISTI~p~~~ 67 (82)
T 1u1s_A 1 MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK-N------T------VSQMVYKHAISTVVPSRP 67 (82)
T ss_dssp -----CCHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE-S------S------SCEEEEGGGEEEEEESSC
T ss_pred CCcccchHHHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe-c------C------ceEEEEeeeeEEEeeccc
Confidence 4444455567788774 89999999999999999999999875443 1 1 135677788888887665
Q ss_pred cc
Q 032863 79 LK 80 (132)
Q Consensus 79 l~ 80 (132)
++
T Consensus 68 v~ 69 (82)
T 1u1s_A 68 VR 69 (82)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 34
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.69 E-value=0.017 Score=40.54 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=47.9
Q ss_pred CCCCCCcHHHHHHhhC--CCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcc
Q 032863 1 MSRSLGIPVKLLHEAS--GHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 1 ms~~i~~P~~lL~~~~--g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
|+....+=-.||+.+. ..+|+|.|.||..++|++.++|.|+=|.- ++ .+.+|-=..|.+|.....
T Consensus 3 m~~~~nlQd~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~--------~~-----kqqLIYKHAISTI~p~~~ 69 (104)
T 2y90_A 3 MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK--------NT-----VSQMVYKHAISTVVPSRP 69 (104)
T ss_dssp -----CCHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE--------SS-----SEEEEEGGGEEEEEESSC
T ss_pred CccccccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE--------CC-----ceEEEEeeeeEEEeeccc
Confidence 4444445567888875 55999999999999999999999875543 12 246788888999988765
Q ss_pred cc
Q 032863 79 LK 80 (132)
Q Consensus 79 l~ 80 (132)
++
T Consensus 70 v~ 71 (104)
T 2y90_A 70 VS 71 (104)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 35
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.56 E-value=0.02 Score=37.65 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=26.4
Q ss_pred CCCEEEEEeCCCcEEEEEEEeeCCceeeE
Q 032863 16 SGHVVTVELKSGELYRGSMVECEDNWNCQ 44 (132)
Q Consensus 16 ~g~~V~VELknG~~y~G~L~~vD~~MNi~ 44 (132)
...+|+|-|.||..++|++.++|.|+=+.
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 68899999999999999999999997554
No 36
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=95.55 E-value=0.025 Score=37.77 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=45.8
Q ss_pred HHHHHhhC--CCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCcccc
Q 032863 9 VKLLHEAS--GHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLK 80 (132)
Q Consensus 9 ~~lL~~~~--g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~l~ 80 (132)
-.||+.+. ..+|+|-|.||..++|++.++|.|+=+.- .+|+ +.+|-=..|..|.....++
T Consensus 13 d~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~-------~~g~-----qqlIYKhAISTI~p~~~v~ 74 (78)
T 3ahu_A 13 DQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLE-------SEGK-----QQLIYKHAISTFAPQKNVQ 74 (78)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE-------SSSC-----EEEEEGGGEEEEEESSCCC
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE-------ECCe-----eEEEEcceEEEEeeccccc
Confidence 46777775 89999999999999999999999875543 2444 2466777888888766553
No 37
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.83 E-value=0.099 Score=34.17 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=44.0
Q ss_pred CCCCcH-HHHHHhhC--CCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEe
Q 032863 3 RSLGIP-VKLLHEAS--GHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMV 74 (132)
Q Consensus 3 ~~i~~P-~~lL~~~~--g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~ 74 (132)
...+.| +.+||+.+ ..+|+|+|-||..+.|.|.-.|.+.=|.-.+ +++ .++|.=..|.||.
T Consensus 4 fdt~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~~------~~~-----~~LI~r~AI~~I~ 67 (70)
T 3hfo_A 4 FDSGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVDD------SER-----STIVRLAAIAYIT 67 (70)
T ss_dssp -CCSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEECT------TCC-----EEEEEGGGEEEEE
T ss_pred ccCCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEcC------CCC-----eEEEEeeeeEEEe
Confidence 345788 78999984 8899999999999999999999977554322 232 2455555566654
No 38
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=94.03 E-value=0.17 Score=33.71 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=47.7
Q ss_pred CcHHHHHHhh--CCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecCccccc
Q 032863 6 GIPVKLLHEA--SGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKN 81 (132)
Q Consensus 6 ~~P~~lL~~~--~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lpd~l~~ 81 (132)
.+=-.||..+ ...+|+|.|.||..+.|++.++|.|+=|. + +++ +.+|-=..|.+|.....+..
T Consensus 7 nlQd~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~-------~g~-----~qLIYKhAISTI~P~~~v~~ 71 (79)
T 3sb2_A 7 LLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-R-------NTV-----TQMVYKHAISTVVPARAVNL 71 (79)
T ss_dssp TTHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-E-------SSS-----EEEEEGGGEEEEEESSCCCC
T ss_pred chHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-E-------CCc-----eEEEEeeeEEEEeecCceec
Confidence 3445677766 47789999999999999999999987654 2 343 35777888999988766553
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=93.64 E-value=0.27 Score=32.22 Aligned_cols=60 Identities=13% Similarity=0.349 Sum_probs=42.2
Q ss_pred CCCcH-HHHHHhhC--CCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEe
Q 032863 4 SLGIP-VKLLHEAS--GHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMV 74 (132)
Q Consensus 4 ~i~~P-~~lL~~~~--g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~ 74 (132)
..+.| +.+||+.+ ..+|+|+|.||..+.|.|.-.|.+.=|.-.+ +++ .+.|.=..|.||.
T Consensus 7 dt~lPsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~------~~~-----~~LI~R~AI~~Ik 69 (72)
T 3hfn_A 7 DTSLPSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADE------NSR-----QTTIWKQAIAYLQ 69 (72)
T ss_dssp --CHHHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC---------C-----EEEEEGGGEEEEE
T ss_pred CCCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcC------CCC-----eEEEEeeeeEEEE
Confidence 34677 89999984 7889999999999999999999876554422 222 2555556666654
No 40
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=92.11 E-value=1.5 Score=28.21 Aligned_cols=62 Identities=16% Similarity=0.361 Sum_probs=43.3
Q ss_pred HHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEec
Q 032863 9 VKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75 (132)
Q Consensus 9 ~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 75 (132)
-+.|.+-.|+.|-|-.-+...++|+|..||.-. +.|+||+-..-+ .-.++.++=.-|.+|.|
T Consensus 8 dktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GN----k~k~liv~idDinWimL 69 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGN----RGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEE----EEEEEEEEGGGEEEEEE
T ss_pred HHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhcc----ccceeEEEeccceEEEe
Confidence 477899999999999999999999999999754 778999764321 22356666666666654
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=91.16 E-value=1.6 Score=30.27 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=49.3
Q ss_pred hhCCCEEEEEeCCCc-EEEEEEEeeCCceeeEEeeeEEEccCCc--eeeeeeEEEeCCeEEEEecC
Q 032863 14 EASGHVVTVELKSGE-LYRGSMVECEDNWNCQLENITYTAKDGK--VSQLEHVFIRGSKVRFMVIP 76 (132)
Q Consensus 14 ~~~g~~V~VELknG~-~y~G~L~~vD~~MNi~L~dv~~t~~dg~--~~~l~~vfIRGs~Ir~I~lp 76 (132)
+.+|+.|+|.+.+.. +|.|.+..+|. -++.|.++. ++|- ..+..+|.++..-|.-+-|-
T Consensus 9 dwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaF---rNGiplk~~~~EVtLsa~DI~~L~II 70 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAF---RNGVPLRKQNAEVVLKCTDIRSIDLI 70 (103)
T ss_dssp GGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEE---ETTEECSCSSSCEEEETTTEEEEEEE
T ss_pred ceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhh---hcCcCcCCCCceEEEEecchhheeee
Confidence 578999999999998 99999999995 348888875 5775 66778899999988877663
No 42
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=84.29 E-value=0.91 Score=33.45 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=29.3
Q ss_pred CCCCcHHHH---HHhhCCCEEEEEeC----CCcEEEEEEEeeCCc
Q 032863 3 RSLGIPVKL---LHEASGHVVTVELK----SGELYRGSMVECEDN 40 (132)
Q Consensus 3 ~~i~~P~~l---L~~~~g~~V~VELk----nG~~y~G~L~~vD~~ 40 (132)
-.+..|++- +..+.|+.|.|+|. +...++|+|.++|+.
T Consensus 87 PGldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 87 PGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp CSSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred CCCCCCCCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 345666544 45679999999994 458999999999964
No 43
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=79.00 E-value=3 Score=32.69 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=29.8
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeCCceeeEEee
Q 032863 15 ASGHVVTVELKSGELYRGSMVECEDNWNCQLEN 47 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~d 47 (132)
..|+.|+|++.++.++.|+..++|+.-.+.|++
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 469999999989999999999999998888875
No 44
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=78.53 E-value=11 Score=25.92 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=42.8
Q ss_pred EEEeCCCcEEEEEEEeeCCceeeEEeeeEEEcc---C-C-----------ceeeeeeEEEeCCeEEEEecCc
Q 032863 21 TVELKSGELYRGSMVECEDNWNCQLENITYTAK---D-G-----------KVSQLEHVFIRGSKVRFMVIPD 77 (132)
Q Consensus 21 ~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~---d-g-----------~~~~l~~vfIRGs~Ir~I~lpd 77 (132)
.|.|++|+.+-+.+..-|+. +.++|..+..+ + | ..+.-+.+.||-+.|.++.-+.
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~ 76 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPK 76 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBC
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCC
Confidence 68999999999999987774 89999876543 1 1 2255788999999999988753
No 45
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=73.89 E-value=2.6 Score=32.24 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=34.1
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCC-ceeeeeeEEEeC
Q 032863 15 ASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRG 67 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg-~~~~l~~vfIRG 67 (132)
..|+.|+|+..++ +.|+..++|+.-.+.|++. +| +....++|.+|+
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~-----~G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILTE-----EGIKEILSGEFSLRR 232 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEET-----TEEEEECSCCEEEC-
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEEC-----CCeEEEEEeEEEEec
Confidence 3799999987665 9999999999999988752 44 334456666664
No 46
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=70.46 E-value=13 Score=28.39 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=28.5
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeCCceeeEEee
Q 032863 15 ASGHVVTVELKSGELYRGSMVECEDNWNCQLEN 47 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~d 47 (132)
..|+.|+|+..++..+.|+..++|+.-.+. ++
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 479999999998887999999999988887 64
No 47
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=68.65 E-value=6.7 Score=30.41 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=30.2
Q ss_pred HHHHHHhhCCCEEEEEeCCCcEEEEEEEeeCCce
Q 032863 8 PVKLLHEASGHVVTVELKSGELYRGSMVECEDNW 41 (132)
Q Consensus 8 P~~lL~~~~g~~V~VELknG~~y~G~L~~vD~~M 41 (132)
++.+=++|+|+.++.++.+|..+.|.|++++.|+
T Consensus 16 ~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 16 AVPLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 4566778999999999999999999999999876
No 48
>3v4h_A Hypothetical protein; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 2.10A {Yersinia pestis}
Probab=67.84 E-value=14 Score=27.59 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=48.0
Q ss_pred CcHHHHHHhhCCCEE-EEEeCCCcEEEEEEEeeCCceeeEEeeeEEEcc------CCceeeeeeEEEeCCeEEEEecCcc
Q 032863 6 GIPVKLLHEASGHVV-TVELKSGELYRGSMVECEDNWNCQLENITYTAK------DGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 6 ~~P~~lL~~~~g~~V-~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~------dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
..|+-+...+.|+.+ .|+|+--.+ -|. -+.|+.+.|+||.++.- ++....+++|.++=..|.+-+.+..
T Consensus 89 aSP~L~~a~~~Ge~l~~v~i~~~R~-gG~---~~~Y~~i~L~~v~Issis~~~~~~~~~~p~E~vsl~Y~kI~w~y~~q~ 164 (185)
T 3v4h_A 89 ASPNLLSYCLLGKHIKNVQFVLRKA-GGD---PLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQN 164 (185)
T ss_dssp THHHHHHHHHHTCCEEEEEEEEEC--------CCEEEEEEEEEEEEEEEEEEEESCC--CCEEEEEEECSEEEEEEEECC
T ss_pred chHHHHHHHhCCCccCcEEEEEEEC-CCC---eEEEEEEEEEeEEEEEEEecccCCCCCceEEEEEEEeCEEEEEEEEEC
Confidence 357655555678887 788876555 453 56899999999998763 2235578899999999998887654
No 49
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=66.68 E-value=12 Score=29.58 Aligned_cols=46 Identities=13% Similarity=-0.065 Sum_probs=33.9
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCC-ceeeeeeEEEe
Q 032863 15 ASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIR 66 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg-~~~~l~~vfIR 66 (132)
..|+.|+|+..+ .++.|+..++|+.-.+.|++- +| +....++|.+|
T Consensus 271 ~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~~-----~g~~~~~~Gev~~r 317 (321)
T 1bia_A 271 FINRPVKLIIGD-KEIFGISRGIDKQGALLLEQD-----GIIKPWMGGEISLR 317 (321)
T ss_dssp TTTSEEEEEETT-EEEEEEEEEECTTSCEEEEET-----TEEEEESSCEEEEC
T ss_pred hcCCEEEEEECC-cEEEEEEEEECCCCeEEEEEC-----CCEEEEEeeeEEEe
Confidence 479999999765 479999999999999988752 33 23334556655
No 50
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=66.45 E-value=8.7 Score=24.02 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.7
Q ss_pred CCCEEEEEeCCCcEEEEEEEeeCCc
Q 032863 16 SGHVVTVELKSGELYRGSMVECEDN 40 (132)
Q Consensus 16 ~g~~V~VELknG~~y~G~L~~vD~~ 40 (132)
.|+.|.+.-.+|.-|-|++.++|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 5899999999999999999999853
No 51
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=61.55 E-value=5.2 Score=30.64 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=23.9
Q ss_pred CCCEEEEEeCCCcEEEEEEEeeCCceeeEEee
Q 032863 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLEN 47 (132)
Q Consensus 16 ~g~~V~VELknG~~y~G~L~~vD~~MNi~L~d 47 (132)
.|+.|+|+..++ +.|+..++|+.-.+.|++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998877 999999999999998875
No 52
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=61.54 E-value=27 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.649 Sum_probs=23.1
Q ss_pred eCCCcEEEEEEE---eeCCceeeEEeeeEEEc
Q 032863 24 LKSGELYRGSMV---ECEDNWNCQLENITYTA 52 (132)
Q Consensus 24 LknG~~y~G~L~---~vD~~MNi~L~dv~~t~ 52 (132)
+++..++.|.|. .||+-+.+.|+|+++..
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEFRE 82 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEEEe
Confidence 445567777774 59999999999999875
No 53
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=58.79 E-value=29 Score=24.53 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=24.2
Q ss_pred eCCCcEEEEEEE---eeCCceeeEEeeeEEEcc
Q 032863 24 LKSGELYRGSMV---ECEDNWNCQLENITYTAK 53 (132)
Q Consensus 24 LknG~~y~G~L~---~vD~~MNi~L~dv~~t~~ 53 (132)
+++..++.|.|. .||+.+.+.|+|+++...
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 456677778885 499999999999998754
No 54
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=56.84 E-value=11 Score=25.71 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=20.1
Q ss_pred HHHhhCC-CEEEEEeCCCcEEEEEEEe
Q 032863 11 LLHEASG-HVVTVELKSGELYRGSMVE 36 (132)
Q Consensus 11 lL~~~~g-~~V~VELknG~~y~G~L~~ 36 (132)
++..+.| ..|.+||.+|..+.||+..
T Consensus 21 ~~~~LdGq~~v~i~l~DGs~l~GTvav 47 (101)
T 2e12_A 21 WVKLLDGQERVRIELDDGSMIAGTVAV 47 (101)
T ss_dssp HHHTSCTTCEEEEEETTSCEEEEEESS
T ss_pred HHHhhCCeeEEEEEEcCCCeEeeeecc
Confidence 3444444 5899999999999999854
No 55
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=55.42 E-value=5.6 Score=26.47 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.7
Q ss_pred HhhCCCEEEEEeCCCcEEEEEEEe
Q 032863 13 HEASGHVVTVELKSGELYRGSMVE 36 (132)
Q Consensus 13 ~~~~g~~V~VELknG~~y~G~L~~ 36 (132)
-.+.+.+|.|+|+||+++.|+...
T Consensus 21 Ac~~~~~l~l~l~dGe~~~g~a~D 44 (86)
T 1sg5_A 21 ACQHHLMLTLELKDGEKLQAKASD 44 (86)
T ss_dssp HHTTTTCEEEECTTTCCEEESSCE
T ss_pred HHHcCCeEEEEEeCCCEEEEEEEe
Confidence 345789999999999999997654
No 56
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.09 E-value=18 Score=23.29 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCCEEEEEeCCCcEEEEEEEeeCC
Q 032863 16 SGHVVTVELKSGELYRGSMVECED 39 (132)
Q Consensus 16 ~g~~V~VELknG~~y~G~L~~vD~ 39 (132)
+|+.|...-++|..|-|++..||.
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~ 35 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDS 35 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEET
T ss_pred cCCEEEEEecCCcEEEeEEEEEec
Confidence 689999999999999999999985
No 57
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=52.87 E-value=6.6 Score=25.97 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.5
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeCCc
Q 032863 15 ASGHVVTVELKSGELYRGSMVECEDN 40 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD~~ 40 (132)
.+|+-|.+.-++|..|-|++..+|..
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccC
Confidence 46999999999999999999999863
No 58
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=49.71 E-value=24 Score=22.51 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCcEEEEEEEeeCC
Q 032863 16 SGHVVTVELKSGELYRGSMVECED 39 (132)
Q Consensus 16 ~g~~V~VELknG~~y~G~L~~vD~ 39 (132)
+|..|...-.+|..|-|++.+++.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~ 39 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINI 39 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEET
T ss_pred CCCEEEEEEccCcEEEeEEEEEcc
Confidence 588999999999999999999986
No 59
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=48.82 E-value=29 Score=27.64 Aligned_cols=32 Identities=3% Similarity=0.117 Sum_probs=27.0
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeCCceeeEEee
Q 032863 15 ASGHVVTVELKSGELYRGSMVECEDNWNCQLEN 47 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~d 47 (132)
..|+.|+|... +.++.|+..++|+.-.+.|++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 46999999875 567999999999999998875
No 60
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=48.80 E-value=29 Score=22.34 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.7
Q ss_pred hCCCEEEEEeCCCcEEEEEEEe
Q 032863 15 ASGHVVTVELKSGELYRGSMVE 36 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~ 36 (132)
.+|+-|.++-+||..|-|++++
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd 38 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIID 38 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEE
T ss_pred ccCCeEEEEecCCCEEEEEEEe
Confidence 4799999999999999999944
No 61
>3he1_A Major exported HCP3 protein; structural genomics, APC22128, HCPC, secretion, virule 2, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=48.37 E-value=20 Score=26.96 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=51.1
Q ss_pred CcHHHHHHhhCCCEE-EEEeCCCcEE-EEEEEeeCCceeeEEeeeEEEccC----------C-ceeeeeeEEEeCCeEEE
Q 032863 6 GIPVKLLHEASGHVV-TVELKSGELY-RGSMVECEDNWNCQLENITYTAKD----------G-KVSQLEHVFIRGSKVRF 72 (132)
Q Consensus 6 ~~P~~lL~~~~g~~V-~VELknG~~y-~G~L~~vD~~MNi~L~dv~~t~~d----------g-~~~~l~~vfIRGs~Ir~ 72 (132)
..|+-+...+.|+.+ .|+|+--.+- .|. -+.|+++.|+||.++.-. + ....+++|.++=..|.+
T Consensus 99 ASP~L~~A~~~Ge~l~~v~l~~yR~~~~G~---~~~Y~~i~L~~v~Issi~~~~~~~~~~~~~~~~p~E~Vsl~Y~kI~w 175 (195)
T 3he1_A 99 ASPLLLAALTSGERLTKVEIQWYRTSAAGT---QEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITW 175 (195)
T ss_dssp SHHHHHHHHHHTCEEEEEEEEEEEECTTSS---EEEEEEEEEEEEEEEEEEEEEC---------CCEEEEEEEECSEEEE
T ss_pred chHHHHHHHhCCCccceEEEEEEEeCCCCc---eEEEEEEEEeeeEEEEEEecccccccCCCCCCcceEEEEEEeCEEEE
Confidence 356666666689988 8888722211 132 357999999999986631 1 23578999999999999
Q ss_pred EecCccccc
Q 032863 73 MVIPDMLKN 81 (132)
Q Consensus 73 I~lpd~l~~ 81 (132)
-+.+.....
T Consensus 176 ~y~~~~~~~ 184 (195)
T 3he1_A 176 THEVSGTSG 184 (195)
T ss_dssp EETTTCCEE
T ss_pred EEEcCCCEE
Confidence 999877554
No 62
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.41 E-value=22 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.9
Q ss_pred CCCEEEEEeCCCcEEEEEEEeeCCc
Q 032863 16 SGHVVTVELKSGELYRGSMVECEDN 40 (132)
Q Consensus 16 ~g~~V~VELknG~~y~G~L~~vD~~ 40 (132)
+|+.|...-++|..|-|++..||..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5899999999999999999999963
No 63
>1y12_A Hypothetical protein PA0085; hemolysin-corregulation, structural PSI, protein structure initiative, midwest center for struc genomics; 1.95A {Pseudomonas aeruginosa PAO1} SCOP: b.157.1.1
Probab=45.15 E-value=66 Score=23.06 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=45.9
Q ss_pred CcHHHHHHhhCCCEE-EEEeCCCcEEEEEEEeeCCceeeEEeeeEEEcc--C---CceeeeeeEEEeCCeEEEEecCcc
Q 032863 6 GIPVKLLHEASGHVV-TVELKSGELYRGSMVECEDNWNCQLENITYTAK--D---GKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 6 ~~P~~lL~~~~g~~V-~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~--d---g~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
..|+-+-..+.|+.+ .++|+--.. .|. +-+.|+.+.|+||.++.- . +....+++|.++=..|.+-+.+..
T Consensus 68 aSP~L~~a~~~g~~l~~~~i~~~r~-~G~--~~~~y~~i~L~~a~Is~i~~~~~~~~~~~~E~vsl~y~~I~~~y~~~~ 143 (165)
T 1y12_A 68 STPNLMMACSSGKHYPQAKLTIRKA-GGE--NQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQK 143 (165)
T ss_dssp THHHHHHHHHHTCCEEEEEEEEECT-TCT--TSCCCEEEEEEEEEEEEEECCCCSSCSSCEEEEEEEEEEEEEEECCBC
T ss_pred cCHHHHHHHhCCCccceEEEEEEEc-CCC--cceEEEEEEEEeEEEEEEEecccCCCCCcEEEEEEEeeEEEEEEEeeC
Confidence 356555555567766 566542111 022 136899999999998763 1 234567889999999998888654
No 64
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=45.13 E-value=56 Score=20.61 Aligned_cols=25 Identities=8% Similarity=0.132 Sum_probs=22.7
Q ss_pred CCCEEEEEeCCCcEEEEEEEeeCCc
Q 032863 16 SGHVVTVELKSGELYRGSMVECEDN 40 (132)
Q Consensus 16 ~g~~V~VELknG~~y~G~L~~vD~~ 40 (132)
+|..|...-.++..|.+++.++++.
T Consensus 9 vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 9 INEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEcCCCCEeeEEEEEECCC
Confidence 5888888888999999999999986
No 65
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.86 E-value=60 Score=20.63 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCcEEEEEEEeeCCc
Q 032863 16 SGHVVTVELKSGELYRGSMVECEDN 40 (132)
Q Consensus 16 ~g~~V~VELknG~~y~G~L~~vD~~ 40 (132)
.|..|.-.-.||.-|++++.++++.
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~ 36 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKE 36 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTT
T ss_pred CCCEEEEECCCCCEEEEEEEEECCC
Confidence 5888888888999999999999864
No 66
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=42.54 E-value=19 Score=30.47 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=29.2
Q ss_pred HHHHHhhC---CCEEEEEeCCC---cEEEEEEEe-e----CCceeeEEe
Q 032863 9 VKLLHEAS---GHVVTVELKSG---ELYRGSMVE-C----EDNWNCQLE 46 (132)
Q Consensus 9 ~~lL~~~~---g~~V~VELknG---~~y~G~L~~-v----D~~MNi~L~ 46 (132)
.+||.+.. |..|.|+.++| .+|+|+|.- . |++.=+.|+
T Consensus 4 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~ 52 (438)
T 1zq1_A 4 DEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLE 52 (438)
T ss_dssp HHHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEET
T ss_pred HHHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEcc
Confidence 45777665 99999999998 899999993 3 356666665
No 67
>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} SCOP: b.157.1.0
Probab=40.88 E-value=16 Score=26.44 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=45.9
Q ss_pred CcHHHHHHhhCCCEE-EEEeCCCcEEEEEEEeeCCceeeEEeeeEEEcc------CCceeeeeeEEEeCCeEEEEecCcc
Q 032863 6 GIPVKLLHEASGHVV-TVELKSGELYRGSMVECEDNWNCQLENITYTAK------DGKVSQLEHVFIRGSKVRFMVIPDM 78 (132)
Q Consensus 6 ~~P~~lL~~~~g~~V-~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~------dg~~~~l~~vfIRGs~Ir~I~lpd~ 78 (132)
..|+-+...+.|+.+ .|+|+--.. -| .-+.|+.+.|+||.++.- ++....++++.++=..|.+-+.|..
T Consensus 66 aSP~L~~a~~~G~~l~~v~i~~~r~-~G---~~~~y~~i~L~~v~Is~i~~~~~~~~~~~p~E~vsl~y~kI~w~y~~q~ 141 (163)
T 3eaa_A 66 ASVKLASAAVQGQNFPTLELEICTQ-AG---DKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQD 141 (163)
T ss_dssp SHHHHHHHHHHTCCEEEEEEEEECS-ST---TCCEEEEEEEEEEEEEEEEEECCCSSSSSCEEEEEEECSEEECCBCCBC
T ss_pred chHHHHHHHhCCCccCeEEEEEEEC-CC---CeeEEEEEEEEeEEEEEEEeccccCCCCceEEEEEEEeeEeEEEEEEEC
Confidence 356655555678855 455542222 23 256899999999998652 2234578889999999988777653
No 68
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=40.61 E-value=5.4 Score=29.75 Aligned_cols=17 Identities=6% Similarity=-0.183 Sum_probs=12.6
Q ss_pred EEecCcc-cccccchhch
Q 032863 72 FMVIPDM-LKNAPMFKRL 88 (132)
Q Consensus 72 ~I~lpd~-l~~ap~l~~~ 88 (132)
|++||++ +..+++-+..
T Consensus 79 yLhLP~e~IVPaTlk~~~ 96 (162)
T 2xzm_7 79 KLGISADNVIPKTFKASN 96 (162)
T ss_dssp HHCSSTTSCCCGGGSCCC
T ss_pred HhCCCccccccchhcccc
Confidence 6789998 8888765543
No 69
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=39.65 E-value=41 Score=23.57 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.7
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeC
Q 032863 15 ASGHVVTVELKSGELYRGSMVECE 38 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD 38 (132)
.+|++|..+-+||..|+|++..+.
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 369999999999999999999865
No 70
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=39.52 E-value=81 Score=20.86 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=23.4
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeCCc
Q 032863 15 ASGHVVTVELKSGELYRGSMVECEDN 40 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD~~ 40 (132)
.+|..|.-.-.++..|.+++.+++..
T Consensus 23 ~vGd~VlArW~D~~yYPAkI~sV~~~ 48 (85)
T 3qii_A 23 QINEQVLACWSDCRFYPAKVTAVNKD 48 (85)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT
T ss_pred ccCCEEEEEeCCCCEeeEEEEEECCC
Confidence 46889999999999999999999976
No 71
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=35.68 E-value=37 Score=28.63 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=28.7
Q ss_pred HHHHHHhhC---CCEEEEEeCCCcEEEEEEEe-e----CCceeeEEe
Q 032863 8 PVKLLHEAS---GHVVTVELKSGELYRGSMVE-C----EDNWNCQLE 46 (132)
Q Consensus 8 P~~lL~~~~---g~~V~VELknG~~y~G~L~~-v----D~~MNi~L~ 46 (132)
-.+||.+.. |..|.|+.++ .+|+|+|.- . |++.=+.|+
T Consensus 7 ~~~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~kl~ 52 (435)
T 2d6f_A 7 ARKFLESASIDVGDMVLVEKPD-VTYEGMVLDRADDADDRHIVLKLE 52 (435)
T ss_dssp HHHHHHTTTCCTTCEEEEECSS-CEEEEEECCCCTTSCSSEEEEECT
T ss_pred HHHHHHHcCCCCCCEEEEEECC-eEEEEEEecCcccCCCCeEEEEcc
Confidence 356788765 9999999887 999999994 3 355555555
No 72
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian}
Probab=34.86 E-value=67 Score=19.64 Aligned_cols=36 Identities=14% Similarity=-0.024 Sum_probs=26.2
Q ss_pred eeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEecC
Q 032863 41 WNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIP 76 (132)
Q Consensus 41 MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~lp 76 (132)
+.+.++|+++...++.......+.|.+..|..|.-.
T Consensus 4 ~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~~ 39 (81)
T 3ggm_A 4 PDMILYNGKITTLDPSQPEVSAIAITDGLITAVGGD 39 (81)
T ss_dssp CSEEEESSEEECSCTTCSEESEEEEETTEEEEEESG
T ss_pred CCEEEECCEEEeCCCCCccccEEEEECCEEEEEeCc
Confidence 446788888876665433457799999999998643
No 73
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=33.16 E-value=64 Score=20.61 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=26.8
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeee
Q 032863 15 ASGHVVTVELKSGELYRGSMVECEDNWNCQLENI 48 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv 48 (132)
..+.+|.|...+-..++|.+..+|+++=+.+.++
T Consensus 47 ~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~~~ 80 (84)
T 1o9y_A 47 ISPGHATLCHGEQVVAEGELVDVEGRLGLQITRL 80 (84)
T ss_dssp SCTTEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 3466777777777789999999999888887665
No 74
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=32.27 E-value=30 Score=24.94 Aligned_cols=63 Identities=27% Similarity=0.398 Sum_probs=42.9
Q ss_pred hhCCCEEEEEeCCCcEEEEEEEeeCCceeeEEeeeEEEccCC-ceeeeeeEEEeCCe------EEEEecCcccccccchh
Q 032863 14 EASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSK------VRFMVIPDMLKNAPMFK 86 (132)
Q Consensus 14 ~~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv~~t~~dg-~~~~l~~vfIRGs~------Ir~I~lpd~l~~ap~l~ 86 (132)
+++-+.+.|.|+||.+++--+-+ +| .....+.|+|||-. |+|=++--.+|.+.+-.
T Consensus 50 SA~RK~arVrL~ngk~VtAyIPG-----------------~GhnlqEhs~VLVrGgrv~DlPGVrykvVrG~lD~~gv~~ 112 (135)
T 2vqe_L 50 SALRKVAKVRLTSGYEVTAYIPG-----------------EGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKD 112 (135)
T ss_dssp CCCEECCEEEETTSCEEEEECCS-----------------SCCCCCTTCEEEEEECCCTTSTTCCEEECTTSTTSCCCTT
T ss_pred hhheeEEEEEcCCCCEEEEEcCC-----------------CCCccCcCCEEEEcCCCcCCCCCeeEEEEeEeecCccccc
Confidence 34556778889998866544433 33 23445678888875 78888888899988776
Q ss_pred chhhhhc
Q 032863 87 RLDARIK 93 (132)
Q Consensus 87 ~~~~~~~ 93 (132)
+...+.|
T Consensus 113 R~~~RSk 119 (135)
T 2vqe_L 113 RKKSRSK 119 (135)
T ss_dssp CCSSGGG
T ss_pred ccccccc
Confidence 6554443
No 75
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=29.80 E-value=69 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=24.2
Q ss_pred hCCCEEEEEeCCCcEEEEEEEeeCCceeeEEee
Q 032863 15 ASGHVVTVELKSGELYRGSMVECEDNWNCQLEN 47 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~vD~~MNi~L~d 47 (132)
..|+.|+| ++ +.|+..++|+.-.+.|++
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 47999999 45 999999999999988864
No 76
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=29.19 E-value=71 Score=21.11 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.3
Q ss_pred CCCEEEEEeCCCcEEEEEEEeeCCceeeEEeee
Q 032863 16 SGHVVTVELKSGELYRGSMVECEDNWNCQLENI 48 (132)
Q Consensus 16 ~g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv 48 (132)
.+.+|.|...+-..++|.+..+|+++=+.+.++
T Consensus 52 ~~~~v~i~vng~~i~~Ge~g~~~~~~aVrI~~i 84 (96)
T 3uep_A 52 VDGEVRLLANGRLLGHGRLVEIQGRLGVRIERL 84 (96)
T ss_dssp SSCEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCcEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 355666666666789999999999999988875
No 77
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=25.81 E-value=1e+02 Score=23.95 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=21.6
Q ss_pred eeCCceeeEEeeeEEEccCCc-eeeeeeEEEeCCeEEEEe
Q 032863 36 ECEDNWNCQLENITYTAKDGK-VSQLEHVFIRGSKVRFMV 74 (132)
Q Consensus 36 ~vD~~MNi~L~dv~~t~~dg~-~~~l~~vfIRGs~Ir~I~ 74 (132)
+.|..|.+.++|+++...++. ...-..|.|.+..|..|-
T Consensus 2 ~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg 41 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIK 41 (418)
T ss_dssp -----CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEE
T ss_pred CCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEe
Confidence 455667777777777654442 223346777777777764
No 78
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima}
Probab=25.54 E-value=94 Score=24.13 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=25.6
Q ss_pred eeeEEeeeEEEccCCceeeeeeEEEeCCeEEEEec
Q 032863 41 WNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVI 75 (132)
Q Consensus 41 MNi~L~dv~~t~~dg~~~~l~~vfIRGs~Ir~I~l 75 (132)
|.+.++|+++.+.++.... ..+.|.+..|..|--
T Consensus 5 ~~~~i~~~~i~~~~~~~~~-~~v~i~~g~I~~i~~ 38 (396)
T 3ooq_A 5 VKILFKNATVFPITSRPFK-GDVLVSNGKVEKVGE 38 (396)
T ss_dssp -CEEEEEEEECCSSSCCEE-EEEEEETTEEEEEES
T ss_pred ceEEEECcEEEeCCCCeEE-eEEEEECCEEEEecC
Confidence 5678899988776665444 788999999988863
No 79
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=22.29 E-value=66 Score=25.83 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=20.2
Q ss_pred HhhCCCEEEEEeCCCcEEEEEEEee
Q 032863 13 HEASGHVVTVELKSGELYRGSMVEC 37 (132)
Q Consensus 13 ~~~~g~~V~VELknG~~y~G~L~~v 37 (132)
+.+.++.|+|.+++|..|.|++-..
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC--
T ss_pred cccCCCEEEEEcCCCCEEEEEEeCc
Confidence 3568999999999999999998643
No 80
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=22.02 E-value=1.5e+02 Score=21.13 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=24.4
Q ss_pred eeEEeeeEEEccCC-ceeeeeeEEEeCCeEEEEe
Q 032863 42 NCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMV 74 (132)
Q Consensus 42 Ni~L~dv~~t~~dg-~~~~l~~vfIRGs~Ir~I~ 74 (132)
.+.|+|+++.+.++ ++..-..|.|++..|..|-
T Consensus 5 ~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig 38 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVS 38 (426)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEE
T ss_pred cEEEECeEEEeCCCCcEecCcEEEEECCEEEEec
Confidence 46788998876654 3444457999999999885
No 81
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=21.29 E-value=1e+02 Score=20.13 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCEEEEEeCCCcEEEEEEEeeCCceeeEEeee
Q 032863 17 GHVVTVELKSGELYRGSMVECEDNWNCQLENI 48 (132)
Q Consensus 17 g~~V~VELknG~~y~G~L~~vD~~MNi~L~dv 48 (132)
+.+|.|...+=..++|.+..+|+++=+.+.++
T Consensus 53 ~~~v~v~v~g~~i~~G~~g~~~~~~aVrI~~~ 84 (96)
T 1o6a_A 53 GEPVDILVNGKLIARGEVVVIDENFGVRITEI 84 (96)
T ss_dssp TCCEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 45555555555678888888888877777665
No 82
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.23 E-value=70 Score=25.04 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=21.4
Q ss_pred EEEEeeCCceeeEEeeeEEEccCCc--eeeeeeEEEeCCe
Q 032863 32 GSMVECEDNWNCQLENITYTAKDGK--VSQLEHVFIRGSK 69 (132)
Q Consensus 32 G~L~~vD~~MNi~L~dv~~t~~dg~--~~~l~~vfIRGs~ 69 (132)
|++.+.+.+.--.-+-|.+.+.+|. .+.++.+|+=|.+
T Consensus 197 G~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk~ 236 (243)
T 3j20_E 197 GRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTD 236 (243)
T ss_dssp EEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEESS
T ss_pred EEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECCC
Confidence 8888887644322222333334553 3456778887754
No 83
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=20.21 E-value=78 Score=23.89 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.9
Q ss_pred hCCCEEEEEeCCCcEEEEEEEe
Q 032863 15 ASGHVVTVELKSGELYRGSMVE 36 (132)
Q Consensus 15 ~~g~~V~VELknG~~y~G~L~~ 36 (132)
..|..|.|.+.+|.++.|++.+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 5788999999889999998876
Done!