Query 032864
Match_columns 132
No_of_seqs 101 out of 437
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01912 eIF-6: eIF-6 family; 100.0 2.8E-41 6.2E-46 263.2 9.2 125 3-130 1-125 (199)
2 COG1976 TIF6 Translation initi 100.0 4E-39 8.7E-44 252.3 14.6 126 1-130 2-127 (222)
3 PTZ00136 eukaryotic translatio 100.0 4E-38 8.7E-43 252.2 16.7 130 1-130 1-130 (247)
4 smart00654 eIF6 translation in 100.0 9.9E-38 2.1E-42 243.7 16.5 126 3-130 1-126 (200)
5 PRK04046 translation initiatio 100.0 1.7E-36 3.8E-41 239.8 16.4 125 1-129 1-125 (222)
6 PTZ00136 eukaryotic translatio 100.0 2.6E-35 5.7E-40 236.0 15.6 121 8-130 99-219 (247)
7 PRK04046 translation initiatio 100.0 6E-35 1.3E-39 231.0 15.7 124 3-130 47-170 (222)
8 cd00527 IF6 Ribosome anti-asso 100.0 1.5E-34 3.3E-39 228.6 15.8 128 1-130 44-171 (220)
9 cd00527 IF6 Ribosome anti-asso 100.0 6.8E-34 1.5E-38 224.9 16.6 125 3-129 2-126 (220)
10 TIGR00323 eIF-6 translation in 100.0 1.2E-33 2.5E-38 222.9 15.4 123 1-130 42-165 (215)
11 COG1976 TIF6 Translation initi 100.0 1.1E-33 2.4E-38 221.7 12.5 118 10-129 98-215 (222)
12 TIGR00323 eIF-6 translation in 100.0 3.1E-32 6.8E-37 214.8 14.5 120 4-129 1-120 (215)
13 smart00654 eIF6 translation in 100.0 4.8E-31 1E-35 206.0 15.3 126 3-130 45-170 (200)
14 PF01912 eIF-6: eIF-6 family; 100.0 7.4E-32 1.6E-36 210.4 8.0 105 9-115 95-199 (199)
15 KOG3185 Translation initiation 100.0 9.7E-30 2.1E-34 197.9 11.4 130 1-130 1-130 (245)
16 KOG3185 Translation initiation 99.9 1.7E-26 3.7E-31 179.8 10.8 117 11-129 102-218 (245)
17 COG0309 HypE Hydrogenase matur 53.9 8.9 0.00019 32.7 1.9 65 15-88 50-114 (339)
18 KOG1511 Mevalonate kinase MVK/ 44.4 29 0.00062 30.1 3.5 35 23-57 341-376 (397)
19 PF02274 Amidinotransf: Amidin 42.8 69 0.0015 25.3 5.4 80 15-98 179-261 (281)
20 PRK13111 trpA tryptophan synth 39.2 95 0.0021 25.1 5.7 21 22-43 119-139 (258)
21 COG0159 TrpA Tryptophan syntha 32.7 1.2E+02 0.0027 24.9 5.4 19 23-41 151-169 (265)
22 PF02274 Amidinotransf: Amidin 30.4 2.7E+02 0.0058 21.9 8.7 108 14-121 123-243 (281)
23 PF09419 PGP_phosphatase: Mito 29.3 95 0.0021 23.7 4.0 22 29-52 92-113 (168)
24 TIGR01901 adhes_NPXG filamento 28.9 53 0.0011 22.0 2.2 27 95-121 36-64 (79)
25 KOG0124 Polypyrimidine tract-b 27.4 71 0.0015 28.1 3.2 35 23-60 215-249 (544)
26 COG2052 Uncharacterized protei 25.6 81 0.0018 21.6 2.7 66 13-82 10-75 (89)
27 PF01136 Peptidase_U32: Peptid 25.4 1.1E+02 0.0023 23.5 3.7 28 67-94 61-89 (233)
28 COG2203 FhlA FOG: GAF domain [ 21.2 1.9E+02 0.0041 18.9 4.0 41 38-87 114-154 (175)
29 cd05402 NT_PAP_TUTase Nucleoti 21.0 2.3E+02 0.005 19.0 4.4 58 3-60 20-84 (114)
30 PF01590 GAF: GAF domain; Int 20.7 1.9E+02 0.0041 19.4 3.9 33 52-87 114-146 (154)
No 1
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=100.00 E-value=2.8e-41 Score=263.25 Aligned_cols=125 Identities=46% Similarity=0.758 Sum_probs=107.9
Q ss_pred eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (132)
Q Consensus 3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~ 82 (132)
+|++|+||++||+|+++||+|||+||+++++.++.|++.|+ |++++|+|+|++++|+|++||+||+|+|+.++|+|++
T Consensus 1 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~ 78 (199)
T PF01912_consen 1 QRLSFYGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELE 78 (199)
T ss_dssp -EE-BTTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHH
T ss_pred CeEEEeCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHH
Confidence 58999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
.|++.++ +++|.+++++++|+||+|+|||+||+|||+++++++|.|-
T Consensus 79 ~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~ 125 (199)
T PF01912_consen 79 HLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIIS 125 (199)
T ss_dssp HHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHH
T ss_pred HHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHH
Confidence 9999998 9999999999999999999999999999999999998763
No 2
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-39 Score=252.32 Aligned_cols=126 Identities=41% Similarity=0.608 Sum_probs=122.5
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|++|++|+|||+||+|+.+||+||++||+.+++.++.|+++|+ |++++++|+||+++|+|+++|+||+|+|+.+.|+|
T Consensus 2 mi~r~~~~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~E 79 (222)
T COG1976 2 MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEE 79 (222)
T ss_pred ceEEEEecCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHH
Confidence 8899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
++.|++ +.+++|.+++++++|+||.|+||||||++||++++++.|.|-
T Consensus 80 l~~l~~--~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~ 127 (222)
T COG1976 80 LRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIE 127 (222)
T ss_pred HHhhcc--cCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHH
Confidence 999998 448999999999999999999999999999999999998874
No 3
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=4e-38 Score=252.20 Aligned_cols=130 Identities=71% Similarity=1.085 Sum_probs=126.8
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|+.|++|+|||+||+|+++||+|||+||+.+++.++.+++.|+++|++++|+|+|++++|+|++||+||+|||+.++|+|
T Consensus 1 m~~r~~~~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (247)
T PTZ00136 1 MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQE 80 (247)
T ss_pred CceeEEecCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHH
Confidence 89999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
++.|++.++.+++|.+++++++|+||.++|||++|++||+++++.+|.|-
T Consensus 81 l~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~ 130 (247)
T PTZ00136 81 LQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQ 130 (247)
T ss_pred HHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHH
Confidence 99999999889999999999999999999999999999999999988763
No 4
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=9.9e-38 Score=243.68 Aligned_cols=126 Identities=64% Similarity=1.000 Sum_probs=122.3
Q ss_pred eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (132)
Q Consensus 3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~ 82 (132)
.|++|+||+++|+|+++||+++++|+++++++++.|++.|+ |+++++++++++++|+++++||+|+|+||.++++|++
T Consensus 1 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~ 78 (200)
T smart00654 1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQ 78 (200)
T ss_pred CeEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHH
Confidence 38999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
.|++.|++++++.+++.+++++||.++||||||+|||++|++++|.|-
T Consensus 79 ~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~ 126 (200)
T smart00654 79 HLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIIS 126 (200)
T ss_pred HHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHH
Confidence 999999878999999999999999999999999999999999999874
No 5
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=1.7e-36 Score=239.80 Aligned_cols=125 Identities=34% Similarity=0.552 Sum_probs=122.3
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|+.|++|+||+++|+|+++||++||+||++++++.+.|++.|+ |+++++++++++++|+|+++|++|+|+||.++++|
T Consensus 1 ~i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e 78 (222)
T PRK04046 1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEE 78 (222)
T ss_pred CcEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHH
Confidence 8999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC 129 (132)
Q Consensus 81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i 129 (132)
++.|++.| ++++.+++.+.+++||.+++||+||++||+++++++|.|
T Consensus 79 ~~~l~e~L--~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i 125 (222)
T PRK04046 79 LELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVI 125 (222)
T ss_pred HHHHHHhc--CceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHH
Confidence 99999999 788888888999999999999999999999999999987
No 6
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=235.96 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=117.5
Q ss_pred eCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864 8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (132)
Q Consensus 8 ~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~ 87 (132)
..-+++|||++|||++||+||+++++..+.|+|+|+ ||+++++|+++++||+++++||+|+|+||.++++|++.|+++
T Consensus 99 ~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~--VeVi~~tIag~~lVGs~~v~Nn~G~LVhP~~s~ee~~~i~d~ 176 (247)
T PTZ00136 99 ERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLG--VEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSL 176 (247)
T ss_pred CccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCCceEEEEEEEeCcEEEECCCCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 88 LPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 88 l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
|++++..+++++|.+.+|++++|||||++|||+++.+|+++|-
T Consensus 177 L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie 219 (247)
T PTZ00136 177 LQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIE 219 (247)
T ss_pred hCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999874
No 7
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=6e-35 Score=231.04 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=117.5
Q ss_pred eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (132)
Q Consensus 3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~ 82 (132)
.|++++|++++|+|+++||+++|+||.+++++++.|++.|+ |+++++++ +++++|+++++||+|+|+||.++++|++
T Consensus 47 ~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l~e~L~--v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~ 123 (222)
T PRK04046 47 VETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELLKEALD--LNVEVLPS-KLTALGNLILANDKGALVHPELSDEARK 123 (222)
T ss_pred EEEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHHHHhcC--ceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHH
Confidence 58899999999999999999999999999999999999999 99999999 9999999999999999999999999999
Q ss_pred HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
.|++.|++++...++ .+.+++||+++||||||+|||+++++++++|-
T Consensus 124 ~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv~p~~t~~ei~~i~ 170 (222)
T PRK04046 124 VIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLVHPDATDEELKFLE 170 (222)
T ss_pred HHHHhhCceEEEEec-CCccceeeEEEEeCCEEEECCCCCHHHHHHHH
Confidence 999999655555555 99999999999999999999999999999863
No 8
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=1.5e-34 Score=228.57 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=118.8
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|+.|++|+||+++|+|+++||+|+++|+.+++++++.|++.|+..|+++++.+.++ ++|+++++||+|+|+||.++++|
T Consensus 44 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e 122 (220)
T cd00527 44 PVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEA 122 (220)
T ss_pred cEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHH
Confidence 78999999999999999999999999999999999999999986688999989988 99999999999999999999999
Q ss_pred HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
++.|++.|++++.+.++ .+++++||.++||||||+|||+++++++|.+-
T Consensus 123 ~~~i~~~L~v~V~~~~i-~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~ 171 (220)
T cd00527 123 EEIIEDVLGVEVFRGTI-AGIKTVGSAGVLTNKGGLVHPKTSDEELEELS 171 (220)
T ss_pred HHHHHHhcCCcEEEEEc-cCcccceeEEEEeccEEEECCCCCHHHHHHHH
Confidence 99999999665555544 56999999999999999999999999998763
No 9
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=6.8e-34 Score=224.86 Aligned_cols=125 Identities=62% Similarity=0.991 Sum_probs=116.9
Q ss_pred eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (132)
Q Consensus 3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~ 82 (132)
+|++|+|+|+||+|+++||+|||+||+++++..+.|++.|+ +++++++++|++++|+|+++|++|+|+|+.++++|++
T Consensus 2 ~~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~ 79 (220)
T cd00527 2 IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQ 79 (220)
T ss_pred eeEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHH
Confidence 69999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC 129 (132)
Q Consensus 83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i 129 (132)
.|++.|+.++++.+.+.+.+++||++++||+|+++||.+++++++.|
T Consensus 80 ~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i 126 (220)
T cd00527 80 HIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEII 126 (220)
T ss_pred HHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHH
Confidence 99999965566655544444999999999999999999999999876
No 10
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=1.2e-33 Score=222.88 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=116.8
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|+.|++|+||++||+|+++||+++++|++.++++.+.|++.|+ |+++++++ +++|+++++||+|+|+||.++++|
T Consensus 42 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e 116 (215)
T TIGR00323 42 PVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDT 116 (215)
T ss_pred cEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHH
Confidence 7899999999999999999999999999999999999999999 99999999 999999999999999999999999
Q ss_pred HHHHHhhCCCCeeEEEec-CCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 81 l~~l~~~l~~~v~v~~v~-~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
++.|++.|+ +++.+.+ .+.+++||.+++||+||+|||+++++++|.|-
T Consensus 117 ~~~i~~~L~--v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~ 165 (215)
T TIGR00323 117 EELISDVLG--VEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELS 165 (215)
T ss_pred HHHHHHhcC--CcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHH
Confidence 999999995 4666666 89999999999999999999999999999863
No 11
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-33 Score=221.72 Aligned_cols=118 Identities=23% Similarity=0.194 Sum_probs=115.0
Q ss_pred CCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhCC
Q 032864 10 SCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLP 89 (132)
Q Consensus 10 s~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l~ 89 (132)
.+++||.++|||++||+||+++++..+.|+|+|+ ||++|.+|+|.++||++++.||+|+|+||.++++|+|+|+++|+
T Consensus 98 ~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~Lg--Vev~rgtIag~~tVGsa~v~tnkG~LvhP~~s~~Ele~Lse~f~ 175 (222)
T COG1976 98 LNALGNLILANDKGALVHPDLSDEAEKEIEDVLG--VEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFG 175 (222)
T ss_pred ccccccEEEecCceeEecCccCHHHHHHHHhhcc--eEEEEEEecCccceeeEEEEecCcceeCCCCCHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864 90 DQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC 129 (132)
Q Consensus 90 ~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i 129 (132)
++++++|+|+|.+++|++++||||||+|+-+++-.|+-+|
T Consensus 176 V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rI 215 (222)
T COG1976 176 VPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARI 215 (222)
T ss_pred eeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHH
Confidence 9999999999999999999999999999999999888765
No 12
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=3.1e-32 Score=214.79 Aligned_cols=120 Identities=50% Similarity=0.813 Sum_probs=115.6
Q ss_pred EEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHH
Q 032864 4 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQH 83 (132)
Q Consensus 4 ~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~ 83 (132)
|++|+|||+||+|+++||+||++||+++++..+.|++.|+ |++++++++|++++|.|+++|++|+++|+..++++++.
T Consensus 1 ~~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~ 78 (215)
T TIGR00323 1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDS 78 (215)
T ss_pred CeeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHh
Confidence 6899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864 84 LRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC 129 (132)
Q Consensus 84 l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i 129 (132)
|++.+ ++..++.+++++||++++||+|+++||.+++++++.|
T Consensus 79 l~e~l----~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i 120 (215)
T TIGR00323 79 LPDSL----KVQRIEERLTALGNNILCNDYGALASPELDRDTEELI 120 (215)
T ss_pred hHhhc----CeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHH
Confidence 99876 6777888889999999999999999999999999876
No 13
>smart00654 eIF6 translation initiation factor 6.
Probab=99.97 E-value=4.8e-31 Score=206.04 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=117.5
Q ss_pred eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (132)
Q Consensus 3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~ 82 (132)
.++++.+++++|+++++||+++|+||.+++++++.|++.|++.++|.+.... .+++|+++++||+|+|+||.++++|++
T Consensus 45 ~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~i~~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~ 123 (200)
T smart00654 45 VHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEE 123 (200)
T ss_pred EEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHHHHHhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHH
Confidence 5678999999999999999999999999999999999999644677666655 999999999999999999999999999
Q ss_pred HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
.|++.|++++..+++ .+.+++|++++|||||++|||+++++|+++|-
T Consensus 124 ~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv~~~tt~~El~~ie 170 (200)
T smart00654 124 IISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLVHPDTSEEELKELS 170 (200)
T ss_pred HHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEECCCCCHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999863
No 14
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=99.97 E-value=7.4e-32 Score=210.40 Aligned_cols=105 Identities=20% Similarity=0.259 Sum_probs=90.1
Q ss_pred CCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhC
Q 032864 9 NSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88 (132)
Q Consensus 9 gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l 88 (132)
..+++||+++|||++|++||+++++..+.|+|+|+ |||++.+|++.++||+++++||+|+|+||.++++|+++|+++|
T Consensus 95 k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~Lg--VeV~~~tia~~~~VGs~~v~tn~G~LvhP~~s~eEl~~l~~~l 172 (199)
T PF01912_consen 95 KLTALGNLILANDKGALVHPELSKETIEIISDVLG--VEVFRGTIAGIKTVGSAAVATNKGGLVHPDASEEELEELEELL 172 (199)
T ss_dssp SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHT--SEEEE--BTTBS-CCCSEEE-SSEEEE-TT--HHHHHHHHHHH
T ss_pred eeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcC--ceEEEEEecCcccceeeEEEeCcEEEECCCCCHHHHHHHHHHh
Confidence 45789999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEecCCcCcceeEEEEeCceE
Q 032864 89 PDQVVVQRIEERLSALGNCIACNDHVA 115 (132)
Q Consensus 89 ~~~v~v~~v~~~~~avGn~ilaNd~ga 115 (132)
+++++++|+|+|.+++|++++||||||
T Consensus 173 ~v~~~~GTVN~Gs~~VgsGlvaN~~g~ 199 (199)
T PF01912_consen 173 GVPVDIGTVNRGSPFVGSGLVANDKGA 199 (199)
T ss_dssp TSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred CCceeeeeecCCCCceeEEEEeccccC
Confidence 999999999999999999999999997
No 15
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.7e-30 Score=197.91 Aligned_cols=130 Identities=76% Similarity=1.179 Sum_probs=127.1
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|..|+.|.||+.||+|...++.||++...-++..+..++..|++.++++.++|++++.+|++++||.+|+|||..++|+|
T Consensus 1 Ma~R~qfens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqE 80 (245)
T KOG3185|consen 1 MALRVQFENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQE 80 (245)
T ss_pred CceeeeecCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHH
Confidence 88899999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
++.|+++||+.|.+.|++.+++|+||+|.|||+-|+|||++++|+.|.|.
T Consensus 81 lqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~ 130 (245)
T KOG3185|consen 81 LQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIA 130 (245)
T ss_pred HHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999988764
No 16
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.7e-26 Score=179.83 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=113.4
Q ss_pred CcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhCCC
Q 032864 11 CEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD 90 (132)
Q Consensus 11 ~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l~~ 90 (132)
+++||.|+|||.+||+||+++++..++|+|+|+ |||+|.+|++..+||++++.+|+|++|||.++-+++++|+++|++
T Consensus 102 sALGNviaCNDyvAlvH~dldketEeii~dVL~--VeVfRqtia~n~LvGsyc~lsnqG~lVhp~Ts~e~q~Els~LlqV 179 (245)
T KOG3185|consen 102 SALGNVIACNDYVALVHPDLDKETEEIIADVLK--VEVFRQTIAQNSLVGSYCALSNQGGLVHPRTSVEDQDELSSLLQV 179 (245)
T ss_pred hhhcCEEEecceeEEecCccchhHHHHHHHHhh--eeeeeecccCCceeeeeEEEcCCCceecCCCCHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864 91 QVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC 129 (132)
Q Consensus 91 ~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i 129 (132)
++..+++|+|...+|.++++|||-|+++-+++.-|+..+
T Consensus 180 plVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsVi 218 (245)
T KOG3185|consen 180 PLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVI 218 (245)
T ss_pred ceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHH
Confidence 999999999999999999999999999999998877654
No 17
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=53.94 E-value=8.9 Score=32.67 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=51.4
Q ss_pred eEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhC
Q 032864 15 VFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88 (132)
Q Consensus 15 ~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l 88 (132)
.+++++|.+.+.|+.++....-+ . -+..+..+...-|.--.-=+-++++|+.++.++++.+-+.+
T Consensus 50 ~la~tTD~~~i~P~ff~~~diG~--------l-AV~gt~NDlav~GA~P~~l~~~lil~eg~~~e~l~~i~~si 114 (339)
T COG0309 50 VLAFTTDPFVIDPLFFPGGDIGK--------L-AVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLERILKSI 114 (339)
T ss_pred eEEEEeCCeEecccccCCCceEE--------E-EEEEehhhhhhcCCCceeeeEeEecCCCCCHHHHHHHHHHH
Confidence 79999999999999988752211 1 23567778888888777778899999999999999887654
No 18
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=44.37 E-value=29 Score=30.13 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=31.1
Q ss_pred EEEEeCCCChhHHHHHHHHhCCC-ccEEEEeecCce
Q 032864 23 FCLVAIGGSESFYSTFEAELADV-IPVVKTSIGGNR 57 (132)
Q Consensus 23 ~alvp~~~~~~~~~~i~~~L~~~-Vevv~~~i~~~~ 57 (132)
+++++|+.+++.++.+++.|... .+++.+.++|..
T Consensus 341 itlL~~~~~qe~i~~~ke~L~s~gf~v~~t~lGG~G 376 (397)
T KOG1511|consen 341 ITLLKPGTEQEQIDKWKEELESHGFEVFETELGGPG 376 (397)
T ss_pred EEEECCCCchHHHHHHHHHHHhcCcceeeccCCCCc
Confidence 57999999999999999999866 899999999864
No 19
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=42.84 E-value=69 Score=25.29 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=48.9
Q ss_pred eEEEecCcEEEEeCCCCh-hHHHHHHHHhCCC-ccEEEEeecCc-eEEEeeEEEeCceEEecCCCCHHHHHHHHhhCCCC
Q 032864 15 VFSKLTNAFCLVAIGGSE-SFYSTFEAELADV-IPVVKTSIGGN-RIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 91 (132)
Q Consensus 15 ~~i~~nd~~alvp~~~~~-~~~~~i~~~L~~~-Vevv~~~i~~~-~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l~~~ 91 (132)
.+....++.+++.|.+.+ ...+.+++.|... .+++..+.... .+-+++...++ |-++.+....+-.+.|++. +
T Consensus 179 ~~~~l~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~iI~v~~~e~~~~~~N~l~l~~-~~vi~~~~~~~~~~~L~~~---G 254 (281)
T PF02274_consen 179 VFNPLDPDLVLVYPDAFDPEEEEELEQALKERGFEIIEVPEEEQWNFACNVLSLGP-GKVIAYASNPRTNEQLEKA---G 254 (281)
T ss_dssp TEEEEETTEEEEECCHHCTHHHHHHHHHHSSSTCEEEEESSCSCSGGGGS-EEECT-TEEEEETTHHHHHHHHHHT---T
T ss_pred EEEEcCCCEEEEeCcccchHHHHHHHHHhcccCcEEEEeccchhhhccCCEEEecC-CEEEECCCCHHHHHHHHhc---C
Confidence 344556677777777654 4477888888855 78888885543 33355555544 4444444556666777776 6
Q ss_pred eeEEEec
Q 032864 92 VVVQRIE 98 (132)
Q Consensus 92 v~v~~v~ 98 (132)
++|..++
T Consensus 255 ~~v~~v~ 261 (281)
T PF02274_consen 255 IEVIEVD 261 (281)
T ss_dssp -EEEEE-
T ss_pred CeEEEEc
Confidence 7777766
No 20
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.19 E-value=95 Score=25.07 Aligned_cols=21 Identities=5% Similarity=-0.167 Sum_probs=10.9
Q ss_pred cEEEEeCCCChhHHHHHHHHhC
Q 032864 22 AFCLVAIGGSESFYSTFEAELA 43 (132)
Q Consensus 22 ~~alvp~~~~~~~~~~i~~~L~ 43 (132)
++.|+ ||++-++.+.+.+.+.
T Consensus 119 dGvii-pDLp~ee~~~~~~~~~ 139 (258)
T PRK13111 119 DGLII-PDLPPEEAEELRAAAK 139 (258)
T ss_pred cEEEE-CCCCHHHHHHHHHHHH
Confidence 34455 4666555555554443
No 21
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.74 E-value=1.2e+02 Score=24.94 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=8.7
Q ss_pred EEEEeCCCChhHHHHHHHH
Q 032864 23 FCLVAIGGSESFYSTFEAE 41 (132)
Q Consensus 23 ~alvp~~~~~~~~~~i~~~ 41 (132)
+-|++|..+++.++.|.+.
T Consensus 151 I~lvaPtt~~~rl~~i~~~ 169 (265)
T COG0159 151 IFLVAPTTPDERLKKIAEA 169 (265)
T ss_pred EEEeCCCCCHHHHHHHHHh
Confidence 3444444444444444443
No 22
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=30.41 E-value=2.7e+02 Score=21.87 Aligned_cols=108 Identities=13% Similarity=0.078 Sum_probs=64.6
Q ss_pred eeEEEecCcEEE--EeCCCChhHHHHHHHHhCCC---ccEE-EEeecCc---eEEEeeEEEeCceEEecCCCC-HHHHHH
Q 032864 14 GVFSKLTNAFCL--VAIGGSESFYSTFEAELADV---IPVV-KTSIGGN---RIIGRLCVGNKNGLLLPHTTT-DQELQH 83 (132)
Q Consensus 14 G~~i~~nd~~al--vp~~~~~~~~~~i~~~L~~~---Vevv-~~~i~~~---~~vG~l~~~N~~G~lv~~~~~-~~El~~ 83 (132)
|.++...++..+ +..-.+++.++.+++.|+.. .+++ .....+. -+=-.+...-.+-++++|.+- +.+.+.
T Consensus 123 GDv~~~~~~~~v~G~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~~~~~~~~~~ 202 (281)
T PF02274_consen 123 GDVLVLGDNVLVIGVGSRTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPDAFDPEEEEE 202 (281)
T ss_dssp GGEEEESTEEEEEEESSSS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECCHHCTHHHHH
T ss_pred cEEEEECCEEEEEeecCCCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCcccchHHHHH
Confidence 677777666666 66777899999999999932 1121 1111111 122245555666666666654 445777
Q ss_pred HHhhCCCC-eeEEEec--CCcCcceeEEEEeCceEEEeCCC
Q 032864 84 LRNSLPDQ-VVVQRIE--ERLSALGNCIACNDHVALAHTDL 121 (132)
Q Consensus 84 l~~~l~~~-v~v~~v~--~~~~avGn~ilaNd~galv~p~l 121 (132)
+.+.|+.. .++-.++ .-..+.+|.+..++.-.++....
T Consensus 203 l~~~l~~~~~~iI~v~~~e~~~~~~N~l~l~~~~vi~~~~~ 243 (281)
T PF02274_consen 203 LEQALKERGFEIIEVPEEEQWNFACNVLSLGPGKVIAYASN 243 (281)
T ss_dssp HHHHHSSSTCEEEEESSCSCSGGGGS-EEECTTEEEEETTH
T ss_pred HHHHhcccCcEEEEeccchhhhccCCEEEecCCEEEECCCC
Confidence 77776433 5666666 33577788888876666666543
No 23
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=29.30 E-value=95 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.8
Q ss_pred CCChhHHHHHHHHhCCCccEEEEe
Q 032864 29 GGSESFYSTFEAELADVIPVVKTS 52 (132)
Q Consensus 29 ~~~~~~~~~i~~~L~~~Vevv~~~ 52 (132)
+...+..+.+++.|+ +++++-.
T Consensus 92 d~~~~~a~~~~~~lg--Ipvl~h~ 113 (168)
T PF09419_consen 92 DPDGERAEALEKALG--IPVLRHR 113 (168)
T ss_pred CccHHHHHHHHHhhC--CcEEEeC
Confidence 346788999999999 9987654
No 24
>TIGR01901 adhes_NPXG filamentous haemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.
Probab=28.91 E-value=53 Score=22.03 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=22.1
Q ss_pred EEecCCcCcce--eEEEEeCceEEEeCCC
Q 032864 95 QRIEERLSALG--NCIACNDHVALAHTDL 121 (132)
Q Consensus 95 ~~v~~~~~avG--n~ilaNd~galv~p~l 121 (132)
..+...+.+.| +++++|-.|.++++..
T Consensus 36 S~I~G~l~~~G~a~v~l~NPnGI~~g~~~ 64 (79)
T TIGR01901 36 SQIQGLLQVNGKANVFLINPNGIIFGGGA 64 (79)
T ss_pred CEeccEEEECCeEeEEEECCCCEEECCCc
Confidence 44567777888 9999999999999864
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=27.43 E-value=71 Score=28.12 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=29.9
Q ss_pred EEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEE
Q 032864 23 FCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60 (132)
Q Consensus 23 ~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG 60 (132)
++=||||++++.++.+=|..| ++++..+++-+..+
T Consensus 215 VaSvHpDLSe~DiKSVFEAFG---~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 215 VASVHPDLSETDIKSVFEAFG---EIVKCQLARAPTGR 249 (544)
T ss_pred eeecCCCccHHHHHHHHHhhc---ceeeEEeeccCCCC
Confidence 466899999999999999999 88888888777654
No 26
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.65 E-value=81 Score=21.63 Aligned_cols=66 Identities=8% Similarity=0.152 Sum_probs=43.1
Q ss_pred ceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864 13 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (132)
Q Consensus 13 iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~ 82 (132)
.||.+.+|--+++|+|+-.+ ..+.|.|.-+.. ..+..|.++-+ -+.+..-++-+++|..-.|.--.
T Consensus 10 FGNivsanRviaIVsPESaP-iKRii~eArdr~-~LIDATYGRrT--Ravii~DS~hvILSAiQPETvA~ 75 (89)
T COG2052 10 FGNIVSANRVIAIVSPESAP-IKRIIQEARDRG-MLIDATYGRRT--RAVIITDSDHVILSAIQPETVAQ 75 (89)
T ss_pred cccEeecceEEEEECCCccc-HHHHHHHHHhcC-cEEEcccCcee--eEEEEecCCcEEEeccChHHHHH
Confidence 68999999999999999654 456666654422 24444444322 35677788888887665544333
No 27
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=25.36 E-value=1.1e+02 Score=23.49 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=23.2
Q ss_pred CceEEecCCCCHHHHHHHHhhC-CCCeeE
Q 032864 67 KNGLLLPHTTTDQELQHLRNSL-PDQVVV 94 (132)
Q Consensus 67 ~~G~lv~~~~~~~El~~l~~~l-~~~v~v 94 (132)
=+++.+||+.+.+|++.|.+.. +.++++
T Consensus 61 ~~~i~ls~EL~~~ei~~i~~~~~~~~~Ev 89 (233)
T PF01136_consen 61 ASRITLSPELSLEEIKEIAENSPGVPLEV 89 (233)
T ss_pred CCEEEECccCCHHHHHHHHHhCCCCeEEE
Confidence 3678999999999999999988 555554
No 28
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=21.20 E-value=1.9e+02 Score=18.95 Aligned_cols=41 Identities=24% Similarity=0.502 Sum_probs=31.4
Q ss_pred HHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864 38 FEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (132)
Q Consensus 38 i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~ 87 (132)
++..|+ +++ +.+..++|.+++.+.... +..+++|++.++.+
T Consensus 114 i~~~l~--vPl----~~~~~~~G~l~~~~~~~~---~~~~~~e~~ll~~l 154 (175)
T COG2203 114 IRSYLG--VPL----IAQGELLGLLCVHDSEPR---RQWSEEELELLEEL 154 (175)
T ss_pred HHHhee--eee----eECCEeeEEeeeeccCCC---CCCCHHHHHHHHHH
Confidence 677888 888 445599999999988643 25788888888765
No 29
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=21.02 E-value=2.3e+02 Score=18.96 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=37.5
Q ss_pred eEEeeeCCCcceeEEEecC-cEEEEeCC---CChhHHHHHHHHhCCC---ccEEEEeecCceEEE
Q 032864 3 TRLMFENSCEVGVFSKLTN-AFCLVAIG---GSESFYSTFEAELADV---IPVVKTSIGGNRIIG 60 (132)
Q Consensus 3 ~~~~i~gs~~iG~~i~~nd-~~alvp~~---~~~~~~~~i~~~L~~~---Vevv~~~i~~~~~vG 60 (132)
.++.++||..-|.+....| +.++..|. ...+..+.+++.|... .++....-|+.+++-
T Consensus 20 ~~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~~ArVPiik 84 (114)
T cd05402 20 AKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGEVVEVEPIINARVPIIK 84 (114)
T ss_pred CEEEEecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCCceeeEEeccCCCCEEE
Confidence 3678999999998877665 56666665 3567777888887632 233344455555543
No 30
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=20.71 E-value=1.9e+02 Score=19.39 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=26.8
Q ss_pred eecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864 52 SIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (132)
Q Consensus 52 ~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~ 87 (132)
...+..++|.+++.+... +...+++|++.++.+
T Consensus 114 i~~~g~~~G~l~l~~~~~---~~~~~~~d~~ll~~~ 146 (154)
T PF01590_consen 114 IISGGRLIGVLSLYRTRP---GRPFTEEDLALLESF 146 (154)
T ss_dssp EEETTEEEEEEEEEEESS---SSS--HHHHHHHHHH
T ss_pred eecccCcEEEEEEEECCC---CCCcCHHHHHHHHHH
Confidence 367789999999999988 889999999988764
Done!