Query 032864
Match_columns 132
No_of_seqs 101 out of 437
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:56:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_J EIF6, translation initi 100.0 2.5E-39 8.7E-44 258.2 11.6 129 1-129 4-132 (248)
2 1g62_A Ribosome anti-associati 100.0 6.5E-39 2.2E-43 252.8 10.7 129 1-129 1-129 (224)
3 4adx_I AIF6; ribosome, protein 100.0 1.5E-36 5.2E-41 239.1 16.5 125 1-130 1-125 (222)
4 4a18_J EIF6, translation initi 100.0 2.1E-37 7.1E-42 247.2 8.1 120 8-129 102-221 (248)
5 1g62_A Ribosome anti-associati 100.0 3.7E-36 1.3E-40 237.1 8.5 120 9-130 100-219 (224)
6 4adx_I AIF6; ribosome, protein 100.0 1.2E-34 3.9E-39 228.4 15.9 125 3-130 90-214 (222)
7 1g61_A EIF-6, translation init 100.0 8.6E-36 3E-40 235.6 7.9 125 1-128 3-130 (228)
8 1g61_A EIF-6, translation init 100.0 1.6E-30 5.3E-35 205.6 8.2 120 8-130 102-222 (228)
9 3i4a_A N(G),N(G)-dimethylargin 44.6 1.1E+02 0.0038 23.9 9.6 103 14-119 152-260 (308)
10 1jdw_A L-arginine\:glycine ami 33.0 1.2E+02 0.0042 24.9 6.9 78 14-98 306-394 (423)
11 3cit_A Sensor histidine kinase 28.4 1.1E+02 0.0038 22.1 5.2 33 51-86 104-136 (160)
12 3e0y_A Conserved domain protei 23.5 1.3E+02 0.0043 19.5 4.5 31 53-87 126-156 (181)
13 3trc_A Phosphoenolpyruvate-pro 23.2 1.5E+02 0.0051 18.9 4.8 31 53-87 121-151 (171)
14 3zzp_A TS9, ribosomal protein 22.1 40 0.0014 21.4 1.6 17 114-130 49-65 (77)
15 1jdw_A L-arginine\:glycine ami 20.5 2.8E+02 0.0094 22.7 6.8 110 14-129 256-383 (423)
No 1
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=2.5e-39 Score=258.19 Aligned_cols=129 Identities=62% Similarity=1.000 Sum_probs=126.7
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|++|++|+||++||+|+++||+|||+||+.+++.++.+++.|++++++++++|+|++++|+|++||+||+|||+.++|+|
T Consensus 4 M~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E 83 (248)
T 4a18_J 4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNE 83 (248)
T ss_dssp CEEEECBTTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHH
T ss_pred ceEEEeecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHH
Confidence 89999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC 129 (132)
Q Consensus 81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i 129 (132)
+++|+++||.++++.+++++++|+||.++|||++|+|||+++++++|.|
T Consensus 84 l~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I 132 (248)
T 4a18_J 84 LRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEII 132 (248)
T ss_dssp HHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHH
T ss_pred HHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876
No 2
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=6.5e-39 Score=252.81 Aligned_cols=129 Identities=70% Similarity=1.077 Sum_probs=126.7
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|+.|++|+||++||+|+++||+|||+||+.+++.++.+++.|++++++++++|+|++++|+|++||+||+|||+.++|+|
T Consensus 1 m~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (224)
T 1g62_A 1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE 80 (224)
T ss_dssp CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred CceEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC 129 (132)
Q Consensus 81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i 129 (132)
++.|++.|+.+++|.+++++++++||.++|||++|+|||+++++..+.|
T Consensus 81 l~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i 129 (224)
T 1g62_A 81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELI 129 (224)
T ss_dssp HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHH
T ss_pred HHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHH
Confidence 9999999998999999999999999999999999999999999998876
No 3
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.5e-36 Score=239.14 Aligned_cols=125 Identities=30% Similarity=0.484 Sum_probs=121.5
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|++|++|+||++||+|+++||+|||+||+.+++.++.+++.|+ +++++++|+|+++||.|+++|++|+|+|+.++|+|
T Consensus 1 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e 78 (222)
T 4adx_I 1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDRE 78 (222)
T ss_pred CcEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 81 l~~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
++.|++. ++++.+++.+++++||+++|||+||+|||+++++++|.|-
T Consensus 79 ~~~l~~~---~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~ 125 (222)
T 4adx_I 79 IDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIG 125 (222)
T ss_pred HHHHHhc---CCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHH
Confidence 9999993 7888999999999999999999999999999999998764
No 4
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=2.1e-37 Score=247.16 Aligned_cols=120 Identities=21% Similarity=0.274 Sum_probs=116.6
Q ss_pred eCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864 8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (132)
Q Consensus 8 ~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~ 87 (132)
..-+++|||++|||++||+||+++++..+.|+|+|+ |||++++|+++++||+++++||+|+||||.++++|+++|+++
T Consensus 102 ~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~Lg--VeV~~~tIags~lVGs~~v~Nn~G~LVhp~~s~eEl~~L~~~ 179 (248)
T 4a18_J 102 EKLSALGNCVVANDYVALIHPDLDRESEEIIADTLG--VEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANL 179 (248)
T ss_dssp CSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHEEECSSCEEECTTCCHHHHHHHHHH
T ss_pred CccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcC--CcEEEEEcCCcceeEEEEEEeCCeEEECCCCCHHHHHHHHHH
Confidence 346899999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864 88 LPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLC 129 (132)
Q Consensus 88 l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i 129 (132)
|++++..+++|.|.+++|++++||||||+|||+++++|+++|
T Consensus 180 l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~I 221 (248)
T 4a18_J 180 LQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVV 221 (248)
T ss_dssp HTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHH
T ss_pred hCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999876
No 5
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=3.7e-36 Score=237.06 Aligned_cols=120 Identities=20% Similarity=0.234 Sum_probs=116.9
Q ss_pred CCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhhC
Q 032864 9 NSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88 (132)
Q Consensus 9 gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~l 88 (132)
.-+++|||++|||++||+||+++++..+.|+|+|+ ||+++++|+|+++||+++++||+|+||||.++++|++.|+++|
T Consensus 100 ~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~--VeV~~~tIag~~lVGs~~v~nn~G~LVhP~~s~ee~~~i~d~L 177 (224)
T 1g62_A 100 RLSALGNVICCNDYVALVHPDIDRETEELISDVLG--VEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLL 177 (224)
T ss_dssp CSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHT--SEEEECCBTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHH
T ss_pred cCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCcceEEEEEEEeCcEEEECCCCCHHHHHHHHHHh
Confidence 46899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 89 PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 89 ~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
++++..+|+|.|.+.+|++++|||||++|||+++.+|+++|-
T Consensus 178 ~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie 219 (224)
T 1g62_A 178 QVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIE 219 (224)
T ss_dssp TSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHH
T ss_pred CCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999763
No 6
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.2e-34 Score=228.42 Aligned_cols=125 Identities=17% Similarity=0.229 Sum_probs=121.3
Q ss_pred eEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHH
Q 032864 3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ 82 (132)
Q Consensus 3 ~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~ 82 (132)
.++. .+++++|+++++||++||+||++++++++.|+|+|+ |++.+.++++.+++|+++++||+|+||||.++++|++
T Consensus 90 ~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~--VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~ 166 (222)
T 4adx_I 90 VRIP-ERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLE--VDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIG 166 (222)
T ss_pred EEEC-CCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhC--ccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHH
Confidence 4566 899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 83 ~l~~~l~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
.|+++|++++..+|++.|.+++|++++|||||++|||+++++|+++|-
T Consensus 167 ~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie 214 (222)
T 4adx_I 167 IIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIE 214 (222)
T ss_pred HHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999873
No 7
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=8.6e-36 Score=235.62 Aligned_cols=125 Identities=32% Similarity=0.428 Sum_probs=120.5
Q ss_pred CceEEeeeCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHH
Q 032864 1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 80 (132)
Q Consensus 1 M~~~~~i~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~E 80 (132)
|+.|++|+||++||+|+++||+|||+||+.+++.++.+++.|+ +++++++|+|+++||.|+++|++|+|+|+.++|+|
T Consensus 3 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e 80 (228)
T 1g61_A 3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE 80 (228)
T ss_dssp CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred ceeEEEEcCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHH
Confidence 8899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhC---CCCeeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhh
Q 032864 81 LQHLRNSL---PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLL 128 (132)
Q Consensus 81 l~~l~~~l---~~~v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~ 128 (132)
++.|++.| +.++++.+++.+.+++||+++|||+||+|||++ ++..|.
T Consensus 81 ~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~ 130 (228)
T 1g61_A 81 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKD 130 (228)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHH
T ss_pred HHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHH
Confidence 99999988 578999999999999999999999999999999 766554
No 8
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=99.96 E-value=1.6e-30 Score=205.55 Aligned_cols=120 Identities=19% Similarity=0.236 Sum_probs=116.3
Q ss_pred eCCCcceeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864 8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (132)
Q Consensus 8 ~gs~~iG~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~ 87 (132)
.+++++|+++++||++||+||++ ++..+.|+|+|+ |++.+.++++..++|+.++.+|+|+|+||.++++|++.|+++
T Consensus 102 ~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~--veV~~~~i~~~~tvg~n~v~tN~G~LVhP~~s~ee~~~i~d~ 178 (228)
T 1g61_A 102 SKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN--VEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSL 178 (228)
T ss_dssp CSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHC--SEEEECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHH
T ss_pred CCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcC--CceEEEEeCCccceeeEEEEecceEEECCCCCHHHHHHHHHh
Confidence 48999999999999999999999 999999999999 999999999999999999999999999999999999999999
Q ss_pred CCCC-eeEEEecCCcCcceeEEEEeCceEEEeCCCCHhhhhhcc
Q 032864 88 LPDQ-VVVQRIEERLSALGNCIACNDHVALAHTDLDRVMLLLCV 130 (132)
Q Consensus 88 l~~~-v~v~~v~~~~~avGn~ilaNd~galv~p~ls~~~~~~i~ 130 (132)
|+++ +..+|++.|.+.+|++++|||||++|||+++.+|+++|-
T Consensus 179 L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie 222 (228)
T 1g61_A 179 FKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIE 222 (228)
T ss_dssp HTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHH
T ss_pred cCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHH
Confidence 9999 889999999999999999999999999999999999763
No 9
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=44.60 E-value=1.1e+02 Score=23.91 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=63.6
Q ss_pred eeEEEecCcEEE-EeCCCChhHHHHHHHHhCCCccEEEEeec-CceEEEeeEEEeCceEEecCC-CCHHHHHHHHhhCCC
Q 032864 14 GVFSKLTNAFCL-VAIGGSESFYSTFEAELADVIPVVKTSIG-GNRIIGRLCVGNKNGLLLPHT-TTDQELQHLRNSLPD 90 (132)
Q Consensus 14 G~~i~~nd~~al-vp~~~~~~~~~~i~~~L~~~Vevv~~~i~-~~~~vG~l~~~N~~G~lv~~~-~~~~El~~l~~~l~~ 90 (132)
|-++..++.+.+ ++.-.+++.++.+++.|.+ .+|+...+. -.-+=..++....+-+++.+. ...+.++.|++....
T Consensus 152 GDvl~~g~~v~vG~s~RTn~~gi~~l~~~l~~-~~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~~~ 230 (308)
T 3i4a_A 152 GDVLFTGREFFVGLSKRTNQRGAEILADTFKD-YAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDH 230 (308)
T ss_dssp GGEEECSSCEEEEESSSCCHHHHHHHHHHTTT-SCEEEEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTCSS
T ss_pred ceEEEECCEEEEEEchhcCHHHHHHHHHHcCC-CeEEEEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhccC
Confidence 777777766333 4556778889999999932 455544332 233344556655566666554 455667788774322
Q ss_pred CeeEEEecCCcCcceeEEEEe-C-c-eEEEeC
Q 032864 91 QVVVQRIEERLSALGNCIACN-D-H-VALAHT 119 (132)
Q Consensus 91 ~v~v~~v~~~~~avGn~ilaN-d-~-galv~p 119 (132)
+.++-.++.. ..+|++..| + + +.+++|
T Consensus 231 ~~~iI~vpe~--~a~N~L~ln~~~~~~vvi~~ 260 (308)
T 3i4a_A 231 RYDKLTVPDD--IAANCIYLNIPNKGHVLLHR 260 (308)
T ss_dssp CCEEEEESSG--GGGCCEEEEETTTEEEEEEE
T ss_pred CCEEEECChH--HhCCEEEEccCCCCCEEEec
Confidence 4456666643 678888887 3 2 688875
No 10
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=32.98 E-value=1.2e+02 Score=24.89 Aligned_cols=78 Identities=4% Similarity=0.039 Sum_probs=53.4
Q ss_pred eeEEEecCcEEEEeCCCChhHHHHHHHHhCCCccEEEEeecCce-----------EEEeeEEEeCceEEecCCCCHHHHH
Q 032864 14 GVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNR-----------IIGRLCVGNKNGLLLPHTTTDQELQ 82 (132)
Q Consensus 14 G~~i~~nd~~alvp~~~~~~~~~~i~~~L~~~Vevv~~~i~~~~-----------~vG~l~~~N~~G~lv~~~~~~~El~ 82 (132)
..+..+..+.+++.|+..++..+.+++. + .+++.....+.. +=.++...|...+|+|. -..+-.+
T Consensus 306 tv~~~v~~~~vlv~~~~~~~~~~~L~~~-~--~~iI~~p~~~~~~~~~~~~s~~~~~~N~L~inpg~VI~~~-~~~~~~~ 381 (423)
T 1jdw_A 306 ATFNIIGPGIVLSNPDRPCHQIDLFKKA-G--WTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDA-NEVPIQK 381 (423)
T ss_dssp TTEEEEETTEEEECTTSCBTTHHHHHHT-T--CEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEET-TCHHHHH
T ss_pred heEEecCCCeEEEecchhHHHHHHHHhC-C--CEEEECCCchhccccccccccccceeeEEEECCCEEEEeC-CCHHHHH
Confidence 3567777888888888877777788763 5 677765543322 34677778876777665 4577778
Q ss_pred HHHhhCCCCeeEEEec
Q 032864 83 HLRNSLPDQVVVQRIE 98 (132)
Q Consensus 83 ~l~~~l~~~v~v~~v~ 98 (132)
.|++. +.+|..++
T Consensus 382 ~L~~~---G~~Vi~v~ 394 (423)
T 1jdw_A 382 MFEKL---GITTIKVN 394 (423)
T ss_dssp HHHHT---TCEEEEEC
T ss_pred HHHHC---CCEEEEec
Confidence 88876 56666665
No 11
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=28.39 E-value=1.1e+02 Score=22.12 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=26.6
Q ss_pred EeecCceEEEeeEEEeCceEEecCCCCHHHHHHHHh
Q 032864 51 TSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRN 86 (132)
Q Consensus 51 ~~i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~ 86 (132)
...++-..+|.+.+.|+-+. ...+++|++.++-
T Consensus 104 L~~~~g~~~Gvlql~N~~~~---~~f~~eD~e~l~l 136 (160)
T 3cit_A 104 LRGADEGSFGTLVLANSVAI---SAPDGEDIESLQL 136 (160)
T ss_dssp EECSSSSEEEEEEEEESSCC---CCCCHHHHHHHHH
T ss_pred eecCCCcEEEEEEEeccCCC---CCCCHHHHHHHHH
Confidence 33478899999999999998 3478888887764
No 12
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=23.53 E-value=1.3e+02 Score=19.47 Aligned_cols=31 Identities=6% Similarity=0.105 Sum_probs=24.8
Q ss_pred ecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864 53 IGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (132)
Q Consensus 53 i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~ 87 (132)
..+..++|.+.+.+.. +...+++|++.++.+
T Consensus 126 ~~~~~~iGvl~~~~~~----~~~f~~~~~~~l~~l 156 (181)
T 3e0y_A 126 GDKKEVYGVINLNTTS----IRSFHEDEIYFVSII 156 (181)
T ss_dssp ECSSCEEEEEEEEESS----CCCCCHHHHHHHHHH
T ss_pred EeCCeEEEEEEEeeCC----CCCCCHHHHHHHHHH
Confidence 4567899999999985 456789999888764
No 13
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=23.21 E-value=1.5e+02 Score=18.93 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=25.0
Q ss_pred ecCceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864 53 IGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (132)
Q Consensus 53 i~~~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~ 87 (132)
..+...+|.+.+.+.. +...+++|++.++.+
T Consensus 121 ~~~~~~~Gvl~~~~~~----~~~f~~~d~~~l~~l 151 (171)
T 3trc_A 121 IEQGELLGILVIQQLE----SHHFAEEEEAFCVTL 151 (171)
T ss_dssp EETTEEEEEEEEEESS----SCCCCHHHHHHHHHH
T ss_pred EECCEEEEEEEEeecC----CCCCCHHHHHHHHHH
Confidence 3567899999999986 366789999988764
No 14
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=22.09 E-value=40 Score=21.42 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=14.0
Q ss_pred eEEEeCCCCHhhhhhcc
Q 032864 114 VALAHTDLDRVMLLLCV 130 (132)
Q Consensus 114 galv~p~ls~~~~~~i~ 130 (132)
-.+++|++++++++.++
T Consensus 49 m~Il~P~l~ee~~~~~v 65 (77)
T 3zzp_A 49 NIVLNPNLDQSQLQNEK 65 (77)
T ss_dssp EEEECTTCCHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHH
Confidence 57889999999887654
No 15
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=20.47 E-value=2.8e+02 Score=22.74 Aligned_cols=110 Identities=8% Similarity=-0.034 Sum_probs=65.3
Q ss_pred eeEEEecCcEEEEeC--CCChhHHHHHHHHhC-CCccEEEEeecC---ceEEEeeEEEeCceEEecCCCCHHHHHHHHhh
Q 032864 14 GVFSKLTNAFCLVAI--GGSESFYSTFEAELA-DVIPVVKTSIGG---NRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS 87 (132)
Q Consensus 14 G~~i~~nd~~alvp~--~~~~~~~~~i~~~L~-~~Vevv~~~i~~---~~~vG~l~~~N~~G~lv~~~~~~~El~~l~~~ 87 (132)
|-+....+ .+++.. -.+++.++.+++.|+ + -+|+-....+ .-+=..++....+=+++++...++.++.|++.
T Consensus 256 GDvl~~G~-~llvg~s~Rtn~~~ie~L~~~L~~~-~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~ 333 (423)
T 1jdw_A 256 ADFIRAGR-DIFAQRSQVTNYLGIEWMRRHLAPD-YRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA 333 (423)
T ss_dssp GGEEEETT-EEEECCCSSCCHHHHHHHHHHHTTT-CEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT
T ss_pred ceeEEeCC-EEEEEecccCCHHHHHHHHHHhCCC-CEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC
Confidence 33444333 455543 345788889999994 2 4555444432 11223566677777888888877777788764
Q ss_pred CCCCeeEEEecCCcC------------cceeEEEEeCceEEEeCCCCHhhhhhc
Q 032864 88 LPDQVVVQRIEERLS------------ALGNCIACNDHVALAHTDLDRVMLLLC 129 (132)
Q Consensus 88 l~~~v~v~~v~~~~~------------avGn~ilaNd~galv~p~ls~~~~~~i 129 (132)
+.++..++..-. .-.|.+..|....+ .|.-.++..+.+
T Consensus 334 ---~~~iI~~p~~~~~~~~~~~~s~~~~~~N~L~inpg~VI-~~~~~~~~~~~L 383 (423)
T 1jdw_A 334 ---GWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVM-VDANEVPIQKMF 383 (423)
T ss_dssp ---TCEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEE-EETTCHHHHHHH
T ss_pred ---CCEEEECCCchhccccccccccccceeeEEEECCCEEE-EeCCCHHHHHHH
Confidence 345655553221 26788989864444 565566555543
Done!