BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032866
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8E|B Chain B, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8F|A Chain A, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|B Chain B, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|C Chain C, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|D Chain D, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|E Chain E, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|F Chain F, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|F Chain F, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|A Chain A, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|B Chain B, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|C Chain C, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|D Chain D, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|E Chain E, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
Length = 497
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 30 LVVSESGQSRVEEVGKHVIMRRTGLP-ARDLRVLDPLLSYPS 70
L+ ++GQ+ VE KH TG+ RDL L P L +PS
Sbjct: 159 LLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPS 200
>pdb|3R3S|A Chain A, Structure Of The Ygha Oxidoreductase From Salmonella
Enterica
pdb|3R3S|B Chain B, Structure Of The Ygha Oxidoreductase From Salmonella
Enterica
pdb|3R3S|C Chain C, Structure Of The Ygha Oxidoreductase From Salmonella
Enterica
pdb|3R3S|D Chain D, Structure Of The Ygha Oxidoreductase From Salmonella
Enterica
Length = 294
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 29 WLVVSESG---QSRVEEVGKHVIMRRTGLPARDLRVLDPLLSYPSSILGRELAVVINLEH 85
W + SG Q ++ + G+ M+R G PA V L S SS + E+ V EH
Sbjct: 233 WTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEH 292
Query: 86 V 86
+
Sbjct: 293 L 293
>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast
Mg2+ Channel Mrs2
Length = 261
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 38 SRVEEVGKHVIMRRTGLPARDLRVLD-PLLSYPSSILGRELAVVINLEHVKAIVTAKEVF 96
S E+ K + L RDLR +D + +I+ + +VINL H+KA++ +V+
Sbjct: 30 SMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVY 89
Query: 97 DALSYQPSG 105
+ PS
Sbjct: 90 VFDTTNPSA 98
>pdb|4GWH|A Chain A, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|B Chain B, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|C Chain C, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|D Chain D, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|E Chain E, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|F Chain F, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|G Chain G, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|H Chain H, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
Length = 288
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 37 QSRVEEVGKHVIMRRTGLPARDLRVLDPLLSYPSSI 72
Q VEE ++V R G DLRV LL Y S
Sbjct: 170 QGSVEEPNRYVWFRANGKMPDDLRVHQYLLGYASDF 205
>pdb|2L69|A Chain A, Solution Nmr Structure Of De Novo Designed Protein, P-Loop
Ntpase Fold, Northeast Structural Genomics Consortium
Target Or28
Length = 134
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 22 KGMGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPAR 57
K +G + +++ + Q+R+EE + V RR G R
Sbjct: 72 KSLGAQVLIIIYDQDQNRLEEFSREV--RRRGFEVR 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,823,095
Number of Sequences: 62578
Number of extensions: 93119
Number of successful extensions: 178
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)