Query 032866
Match_columns 131
No_of_seqs 103 out of 235
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 1.9E-33 4E-38 242.8 8.7 103 15-118 53-155 (414)
2 PF04397 LytTR: LytTr DNA-bind 67.8 9.1 0.0002 25.6 3.6 46 71-116 47-97 (98)
3 PF14125 DUF4292: Domain of un 58.1 15 0.00033 28.5 3.7 30 73-102 31-66 (210)
4 cd01240 PH_beta-ARK Beta adren 54.8 16 0.00036 27.6 3.2 43 74-122 62-104 (116)
5 PF04379 DUF525: Protein of un 44.6 25 0.00054 24.8 2.7 18 25-42 31-48 (90)
6 PRK05461 apaG CO2+/MG2+ efflux 41.1 29 0.00063 26.1 2.7 18 25-42 48-65 (127)
7 PF10882 bPH_5: Bacterial PH d 30.8 71 0.0015 21.6 3.2 26 88-115 74-99 (100)
8 COG0424 Maf Nucleotide-binding 30.8 16 0.00034 29.5 -0.1 70 43-115 12-100 (193)
9 COG2967 ApaG Uncharacterized p 29.9 56 0.0012 25.0 2.7 18 25-42 47-64 (126)
10 cd02549 Peptidase_C39A A sub-f 27.7 1.2E+02 0.0027 20.9 4.1 51 49-103 54-116 (141)
11 cd01806 Nedd8 Nebb8-like ubiq 27.5 1.2E+02 0.0026 19.1 3.7 18 45-62 27-44 (76)
12 PF07013 DUF1314: Protein of u 24.0 38 0.00083 27.3 1.0 45 22-66 54-108 (177)
13 PHA03371 circ protein; Provisi 23.6 39 0.00084 28.4 1.0 44 23-66 78-131 (240)
14 COG3279 LytT Response regulato 23.0 1.2E+02 0.0026 24.4 3.7 50 69-118 188-243 (244)
15 PF10727 Rossmann-like: Rossma 22.9 98 0.0021 22.9 2.9 38 92-129 68-107 (127)
16 KOG2836 Protein tyrosine phosp 20.7 1.4E+02 0.003 23.8 3.5 34 75-114 6-39 (173)
17 TIGR02877 spore_yhbH sporulati 20.7 2.3E+02 0.005 25.2 5.2 30 35-64 105-142 (371)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-33 Score=242.84 Aligned_cols=103 Identities=49% Similarity=0.695 Sum_probs=98.6
Q ss_pred CCCCCCCCCCCceeEEEEcCCCCeEEEEecHHHHHHHcCCCCccccCcCCCCCcCceeEecCCeEEEecccceeEeeeCe
Q 032866 15 TATPRPRKGMGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLRVLDPLLSYPSSILGRELAVVINLEHVKAIVTAKE 94 (131)
Q Consensus 15 ~~~~~~k~~~~~~~w~~fD~~G~~~~~e~~K~~l~~~~gL~~RDLR~lDp~~~~~psILvRe~aIvvNLe~IRAIItaD~ 94 (131)
+....+|+++++++|++||++|+++..+++|++||+++||+|||||++||+++||++|++||+|||+||||||||||+|+
T Consensus 53 ~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaee 132 (414)
T KOG2662|consen 53 SSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADE 132 (414)
T ss_pred CcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhh
Confidence 45577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcchhhHHHHHHhhhcc
Q 032866 95 VFDALSYQPSGCSVRSGFAASHFF 118 (131)
Q Consensus 95 Vllfd~~~~~~~~fl~~L~~rl~~ 118 (131)
|++||+.++ +.++..+++.|+..
T Consensus 133 Vll~d~~~~-v~~~~~el~~~l~~ 155 (414)
T KOG2662|consen 133 VLLLDSLDP-VIPYNEELQRRLPV 155 (414)
T ss_pred eeEeccccc-cchHHHHHHHHhcc
Confidence 999999998 99999999999765
No 2
>PF04397 LytTR: LytTr DNA-binding domain; InterPro: IPR007492 The LytTr domain is a DNA-binding, potential winged helix-turn-helix domain (~100 residues) present in a variety of bacterial transcriptional regulators of the algR/agrA/lytR family. It is named after the lytR response regulators involved in the regulation of cell autolysis. The LytTr domain binds to a specific DNA sequence pattern in the upstream regions of target genes []. The N-terminal of the protein contains a response regulator receiver domain (IPR001789 from INTERPRO).; PDB: 3BS1_A 3D6W_B.
Probab=67.77 E-value=9.1 Score=25.56 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=29.9
Q ss_pred eeEecCCeEEEecccceeEeee---CeEEEecCCC--cchhhHHHHHHhhh
Q 032866 71 SILGRELAVVINLEHVKAIVTA---KEVFDALSYQ--PSGCSVRSGFAASH 116 (131)
Q Consensus 71 sILvRe~aIvvNLe~IRAIIta---D~Vllfd~~~--~~~~~fl~~L~~rl 116 (131)
.++-=.+..+||+.+|+.|-.. ...+.+.... |-.....++|.+.|
T Consensus 47 ~F~r~hrs~iVN~~~I~~i~~~~~~~~~~~l~~~~~i~vSr~~~~~~k~~l 97 (98)
T PF04397_consen 47 NFIRIHRSYIVNLDHIKSIDKDSNGRYELILKNGEEIPVSRRYKKELKEKL 97 (98)
T ss_dssp TEEEEETTEEEEGGGEEEEECCCTTCCEEEETTS-EEEE-TTTHHHHHHHH
T ss_pred ccccccceEEEehheeEEEEECCCCcEEEEECCCeEEEEcHHHHHHHHHhh
Confidence 3444478899999999999976 5577776432 23455555555544
No 3
>PF14125 DUF4292: Domain of unknown function (DUF4292)
Probab=58.11 E-value=15 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=25.3
Q ss_pred EecCCeEEEec------ccceeEeeeCeEEEecCCC
Q 032866 73 LGRELAVVINL------EHVKAIVTAKEVFDALSYQ 102 (131)
Q Consensus 73 LvRe~aIvvNL------e~IRAIItaD~Vllfd~~~ 102 (131)
+.|+..|-+++ |-.|++||.|.|.+.|..+
T Consensus 31 ~~kd~~I~is~~~~lGievar~~iTpd~v~~~d~~~ 66 (210)
T PF14125_consen 31 MKKDSRIWISVTPFLGIEVARALITPDSVQFYDRLN 66 (210)
T ss_pred EecCCEEEEEeccccCceEEEEEEcCceEEEEEccC
Confidence 34588888888 6779999999999999665
No 4
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=54.76 E-value=16 Score=27.55 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=31.6
Q ss_pred ecCCeEEEecccceeEeeeCeEEEecCCCcchhhHHHHHHhhhccccce
Q 032866 74 GRELAVVINLEHVKAIVTAKEVFDALSYQPSGCSVRSGFAASHFFSSSF 122 (131)
Q Consensus 74 vRe~aIvvNLe~IRAIItaD~Vllfd~~~~~~~~fl~~L~~rl~~s~~~ 122 (131)
=-+|||++++-+ -.+++|-..+++....|..+|..-.+.|+-.
T Consensus 62 K~~~CI~ik~k~------~~k~vlt~~d~i~l~qW~~elr~a~r~Sq~l 104 (116)
T cd01240 62 KEENCILLKIRD------EKKIVLTNSDEIELKQWKKELRDAHRESQQL 104 (116)
T ss_pred ccCceEEEEEcC------CceEEEecCCcHHHHHHHHHHHHHHHHHHHH
Confidence 448899999865 3445555667789999999998877776543
No 5
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=44.65 E-value=25 Score=24.83 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=14.2
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-.|.|.+.|++|..+.++
T Consensus 31 ~sR~W~I~d~~g~~~~V~ 48 (90)
T PF04379_consen 31 LSRHWIITDADGHVEEVE 48 (90)
T ss_dssp EEEEEEEEETTS-EEEEE
T ss_pred EccEEEEEeCCCCEEEEE
Confidence 378999999999887764
No 6
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=41.12 E-value=29 Score=26.07 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=15.1
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-.|.|++.|++|+.+.++
T Consensus 48 ~~R~W~I~d~~g~~~~V~ 65 (127)
T PRK05461 48 LSRHWLITDANGRVQEVR 65 (127)
T ss_pred EeeeEEEEECCCCEEEEE
Confidence 469999999999987654
No 7
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=30.84 E-value=71 Score=21.65 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=18.8
Q ss_pred eEeeeCeEEEecCCCcchhhHHHHHHhh
Q 032866 88 AIVTAKEVFDALSYQPSGCSVRSGFAAS 115 (131)
Q Consensus 88 AIItaD~Vllfd~~~~~~~~fl~~L~~r 115 (131)
.|=|.|+.+++.|.+ ...|+++|+.|
T Consensus 74 ~I~t~~~~y~isp~~--~~~fi~~l~~r 99 (100)
T PF10882_consen 74 LIKTKDKTYVISPED--PEEFIEALKKR 99 (100)
T ss_pred EEEECCceEEEcCCC--HHHHHHHHHhc
Confidence 344567777887765 47899999887
No 8
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=30.77 E-value=16 Score=29.51 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=44.8
Q ss_pred ecHHHHHHHcCCCCccccCcCCCCCcC------c----eeEecCCeEEEecccc--eeEeeeCeEEEec------CCC-c
Q 032866 43 VGKHVIMRRTGLPARDLRVLDPLLSYP------S----SILGRELAVVINLEHV--KAIVTAKEVFDAL------SYQ-P 103 (131)
Q Consensus 43 ~~K~~l~~~~gL~~RDLR~lDp~~~~~------p----sILvRe~aIvvNLe~I--RAIItaD~Vllfd------~~~-~ 103 (131)
-.|.+|++++|+ ++.++-|.++-+ | .-|++++|.-+-=.+- -.||.||.|+++| |.| .
T Consensus 12 PrR~elL~~~gi---~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~~~~~~VigaDtvv~ldgrilgKP~~~~ 88 (193)
T COG0424 12 PRRRELLEQLGI---PFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVAARLPPDALVIGADTVVVLDGRILGKPKDEE 88 (193)
T ss_pred HHHHHHHHHCCC---CeEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCCCCCEEEecCeEEEECCEEecCCCCHH
Confidence 358999999998 566666655321 1 2344455554443333 5689999999998 333 3
Q ss_pred chhhHHHHHHhh
Q 032866 104 SGCSVRSGFAAS 115 (131)
Q Consensus 104 ~~~~fl~~L~~r 115 (131)
....+++.|..|
T Consensus 89 eA~~~L~~lSG~ 100 (193)
T COG0424 89 EAREMLRKLSGR 100 (193)
T ss_pred HHHHHHHHhcCC
Confidence 567777777665
No 9
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=29.86 E-value=56 Score=25.04 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.5
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-+|.|++.|.+|....++
T Consensus 47 lsR~W~ITd~~g~v~eV~ 64 (126)
T COG2967 47 LSRYWLITDGNGRVTEVE 64 (126)
T ss_pred eeeEEEEecCCCcEEEEE
Confidence 479999999999988764
No 10
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=27.73 E-value=1.2e+02 Score=20.89 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=30.1
Q ss_pred HHHcCCCCccccCcCCCCCcCceeEecCCeEEEec---------ccceeEeee---CeEEEecCCCc
Q 032866 49 MRRTGLPARDLRVLDPLLSYPSSILGRELAVVINL---------EHVKAIVTA---KEVFDALSYQP 103 (131)
Q Consensus 49 ~~~~gL~~RDLR~lDp~~~~~psILvRe~aIvvNL---------e~IRAIIta---D~Vllfd~~~~ 103 (131)
.+++|+..|.++.-+. + -..+-....+|+.+ .|.-.|... +.+++.||...
T Consensus 54 a~~~G~~~~~~~~~~~-~---~~~l~~~~Pvi~~~~~~~~~~~~gH~vVv~g~~~~~~~~i~DP~~~ 116 (141)
T cd02549 54 ARKYGLVVRPLTGLLA-L---LRQLAAGHPVIVSVNLGVSITPSGHAMVVIGYDRKGNVYVNDPGGG 116 (141)
T ss_pred HhhCCCcEEECCCHHH-H---HHHHHCCCeEEEEEecCcccCCCCeEEEEEEEcCCCCEEEECCCCC
Confidence 7889999998875332 0 01222333344433 366666654 47999998764
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=27.49 E-value=1.2e+02 Score=19.07 Aligned_cols=18 Identities=22% Similarity=0.614 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCCccccCc
Q 032866 45 KHVIMRRTGLPARDLRVL 62 (131)
Q Consensus 45 K~~l~~~~gL~~RDLR~l 62 (131)
|..|..+.|++|.+.|++
T Consensus 27 K~~i~~~~g~~~~~qrL~ 44 (76)
T cd01806 27 KERVEEKEGIPPQQQRLI 44 (76)
T ss_pred HHHHhHhhCCChhhEEEE
Confidence 788888899999999865
No 12
>PF07013 DUF1314: Protein of unknown function (DUF1314); InterPro: IPR010741 This family consists of several alphaherpesvirus proteins of around 200 residues in length. They belong to the varicellovirus ORF2 family and their function is unknown.
Probab=23.99 E-value=38 Score=27.27 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=33.6
Q ss_pred CCCCceeEEEEcC-CCCeEEEE---------ecHHHHHHHcCCCCccccCcCCCC
Q 032866 22 KGMGLRTWLVVSE-SGQSRVEE---------VGKHVIMRRTGLPARDLRVLDPLL 66 (131)
Q Consensus 22 ~~~~~~~w~~fD~-~G~~~~~e---------~~K~~l~~~~gL~~RDLR~lDp~~ 66 (131)
...+.|+++++-. +|++--.| -.=++|+..+||+-|||-++|-.+
T Consensus 54 a~g~~RkF~iy~~~~~~vyGyE~~tgLH~La~sLhdfL~~~GlSqRDl~v~~~~~ 108 (177)
T PF07013_consen 54 AIGSCRKFVIYLSRNGSVYGYENGTGLHFLAKSLHDFLTTKGLSQRDLMVWDGTF 108 (177)
T ss_pred ccCCCceEEEEEccCCeEEeecCCcchhhhhHHHHHHHHHcCcccccEEEEeeeE
Confidence 3457889988865 45443222 346899999999999999999876
No 13
>PHA03371 circ protein; Provisional
Probab=23.56 E-value=39 Score=28.43 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=33.0
Q ss_pred CCCceeEEEEcC-CCCeEEEE---------ecHHHHHHHcCCCCccccCcCCCC
Q 032866 23 GMGLRTWLVVSE-SGQSRVEE---------VGKHVIMRRTGLPARDLRVLDPLL 66 (131)
Q Consensus 23 ~~~~~~w~~fD~-~G~~~~~e---------~~K~~l~~~~gL~~RDLR~lDp~~ 66 (131)
..+-|+++++-. +|++--.| -.=++|++.+||+-|||-++|-.+
T Consensus 78 ~g~~RkF~iyl~r~~sVyGYE~gtGLH~LA~sLhdFL~~~GLSqRDl~v~d~~~ 131 (240)
T PHA03371 78 IGSGRKFVIYLSRNGSVYGYENGTGLHFLAKSLHDFLTTKGLSQRDLMVVDGTF 131 (240)
T ss_pred cCCCceEEEEEccCCeEEeecCCcchhhhHHHHHHHHHhcCccccceEEEeeee
Confidence 456788888755 55543222 346899999999999999999876
No 14
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=23.00 E-value=1.2e+02 Score=24.38 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=34.6
Q ss_pred Cce-eEecCCeEEEecccceeEeeeC-eEEEecCCC----cchhhHHHHHHhhhcc
Q 032866 69 PSS-ILGRELAVVINLEHVKAIVTAK-EVFDALSYQ----PSGCSVRSGFAASHFF 118 (131)
Q Consensus 69 ~ps-ILvRe~aIvvNLe~IRAIItaD-~Vllfd~~~----~~~~~fl~~L~~rl~~ 118 (131)
||+ .+-=.+..|||+.+|+-|=..+ ..+..+-.+ |-+..|+++|.+++..
T Consensus 188 ~~~~F~R~HRS~iVN~~~I~~i~~~~~g~~~~~~~~~~~~pvSR~~~k~lk~~l~~ 243 (244)
T COG3279 188 PPSGFIRCHRSYIVNLAKIKEIRRWFNGLYLLILGNGCEVPVSRRYLKELKEALGL 243 (244)
T ss_pred CCcceEEeehhheEEHhhheEeeecCCceEEeecCCCcccchhHHHHHHHHHHhcc
Confidence 444 3333678899999999887774 344444444 6778999999887753
No 15
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=22.90 E-value=98 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=25.1
Q ss_pred eCeEEEecCCCcchhhHHHHHHhh--hccccceeeccccc
Q 032866 92 AKEVFDALSYQPSGCSVRSGFAAS--HFFSSSFVHTTGRA 129 (131)
Q Consensus 92 aD~Vllfd~~~~~~~~fl~~L~~r--l~~s~~~~~~~~~~ 129 (131)
.-+++++-..|.......++|... ....+-++||.|.-
T Consensus 68 ~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 68 DADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp C-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred cCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 334667766667999999999988 66788999999963
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=20.74 E-value=1.4e+02 Score=23.78 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=28.7
Q ss_pred cCCeEEEecccceeEeeeCeEEEecCCCcchhhHHHHHHh
Q 032866 75 RELAVVINLEHVKAIVTAKEVFDALSYQPSGCSVRSGFAA 114 (131)
Q Consensus 75 Re~aIvvNLe~IRAIItaD~Vllfd~~~~~~~~fl~~L~~ 114 (131)
|.-...|.-++.|-+||.+ |.|.+...|++||..
T Consensus 6 rPAPveIsy~~MrFLIThn------PtnaTln~fieELkK 39 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITHN------PTNATLNKFIEELKK 39 (173)
T ss_pred CCCCeeeeccceEEEEecC------CCchhHHHHHHHHHh
Confidence 5556778889999999985 899999999999863
No 17
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=20.70 E-value=2.3e+02 Score=25.23 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=18.6
Q ss_pred CCCe-EEEEecHHHHHH----Hc---CCCCccccCcCC
Q 032866 35 SGQS-RVEEVGKHVIMR----RT---GLPARDLRVLDP 64 (131)
Q Consensus 35 ~G~~-~~~e~~K~~l~~----~~---gL~~RDLR~lDp 64 (131)
.|+- -.+++++.+|+. ++ .|.++-+..|..
T Consensus 105 eGed~fe~e~s~eE~~~~lfEdLeLPnL~~k~~~~i~~ 142 (371)
T TIGR02877 105 EGEDYYETEVTLEELFELLFEDLELPNLKKKKFDEITT 142 (371)
T ss_pred CCcceEEEEecHHHHHHHHHhhccCCCcccccCCcceE
Confidence 3444 347999999988 34 445565555544
Done!