Query 032866
Match_columns 131
No_of_seqs 103 out of 235
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:59:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 3.7E-31 1.3E-35 216.2 11.1 95 26-120 16-117 (261)
2 1cn3_F Fragment of coat protei 67.7 2.8 9.5E-05 23.4 1.7 8 7-14 2-9 (29)
3 3d6w_A Methyl-accepting/DNA re 65.7 7.3 0.00025 25.8 3.9 43 76-118 62-109 (111)
4 2i9o_A MHB8A peptide; beta-hai 47.8 7.7 0.00026 22.7 1.3 8 7-14 14-21 (37)
5 2f1e_A Protein APAG; APAG prot 43.3 17 0.00058 26.2 2.9 18 25-42 48-65 (127)
6 1xvs_A Protein APAG; MCSG APC2 42.7 18 0.00062 26.1 2.9 18 25-42 47-64 (126)
7 1tza_A APAG protein, SOR45; st 41.7 19 0.00063 26.3 2.9 18 25-42 47-64 (134)
8 1xq4_A Protein APAG; all beta 40.0 21 0.00071 26.3 2.9 18 25-42 52-69 (139)
9 2i7u_A Four-alpha-helix bundle 37.5 11 0.00038 24.2 0.9 6 8-13 30-35 (62)
10 4g4k_A Accessory gene regulato 34.9 22 0.00076 23.2 2.2 27 73-99 61-88 (103)
11 3bs1_A Accessory gene regulato 33.8 24 0.00082 22.8 2.2 24 76-99 65-88 (103)
12 1wx7_A Ubiquilin 3; ubiquitin- 31.8 1.1E+02 0.0037 20.0 6.1 18 45-62 43-60 (106)
13 3r8s_J 50S ribosomal protein L 24.6 43 0.0015 24.7 2.4 57 20-87 6-63 (142)
14 4h3u_A Hypothetical protein; s 22.6 99 0.0034 21.0 3.9 28 28-56 122-151 (158)
15 1wx8_A Riken cDNA 4931431F19; 22.5 1.5E+02 0.0053 18.7 7.2 27 36-62 26-60 (96)
16 3tix_A Ubiquitin-like protein 22.0 1.2E+02 0.004 23.9 4.6 34 29-62 59-100 (207)
17 1wh2_A Hypothetical protein AT 20.7 1.3E+02 0.0045 19.7 4.0 38 22-60 13-52 (78)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-31 Score=216.17 Aligned_cols=95 Identities=21% Similarity=0.257 Sum_probs=88.0
Q ss_pred ceeEEEEcCCCCeEEEE--ecHHHHHHHcCCCCccccCcCCCC-CcCceeEecCCeEEEecccceeEeeeCeEEEecCCC
Q 032866 26 LRTWLVVSESGQSRVEE--VGKHVIMRRTGLPARDLRVLDPLL-SYPSSILGRELAVVINLEHVKAIVTAKEVFDALSYQ 102 (131)
Q Consensus 26 ~~~w~~fD~~G~~~~~e--~~K~~l~~~~gL~~RDLR~lDp~~-~~~psILvRe~aIvvNLe~IRAIItaD~Vllfd~~~ 102 (131)
.-+||+||++|+++.++ ++|++||+++||+|||||+|||++ +++|+|++|++||||||+|||||||+|+|+|||+.+
T Consensus 16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~ 95 (261)
T 3rkg_A 16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTN 95 (261)
T ss_dssp EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSC
T ss_pred eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCC
Confidence 46899999999999865 999999999999999999999996 678899999999999999999999999999999999
Q ss_pred cchh----hHHHHHHhhhcccc
Q 032866 103 PSGC----SVRSGFAASHFFSS 120 (131)
Q Consensus 103 ~~~~----~fl~~L~~rl~~s~ 120 (131)
+.+. .|+++|+.|+....
T Consensus 96 ~~~~~~~~~f~~~l~~~l~~~~ 117 (261)
T 3rkg_A 96 PSAAAKLSVLMYDLESKLSSTK 117 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS
T ss_pred chhhhhHHHHHHHHHHHhccCC
Confidence 8776 59999999997643
No 2
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=67.74 E-value=2.8 Score=23.44 Aligned_cols=8 Identities=88% Similarity=1.934 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 032866 7 GGGGGGGP 14 (131)
Q Consensus 7 ~~~~~~~~ 14 (131)
+||||||.
T Consensus 2 ggggggga 9 (29)
T 1cn3_F 2 GGGGGGGA 9 (29)
T ss_dssp CCCCCSTT
T ss_pred CCCCCCcc
Confidence 33344443
No 3
>3d6w_A Methyl-accepting/DNA response regulator; structural genomics, APC7590, lyttr DNA-binding domain, METH accepting/DNA response regulator, PSI-2; 2.40A {Bacillus cereus}
Probab=65.71 E-value=7.3 Score=25.77 Aligned_cols=43 Identities=23% Similarity=0.242 Sum_probs=27.9
Q ss_pred CCeEEEecccceeEeee---CeEEEecCCC--cchhhHHHHHHhhhcc
Q 032866 76 ELAVVINLEHVKAIVTA---KEVFDALSYQ--PSGCSVRSGFAASHFF 118 (131)
Q Consensus 76 e~aIvvNLe~IRAIIta---D~Vllfd~~~--~~~~~fl~~L~~rl~~ 118 (131)
.+..+|||.+|+.|-.. ...+.++... |-...+.+++...+..
T Consensus 62 hrS~iVN~~~I~~i~~~~~~~~~v~l~~g~~ipvSr~~~~~~~~~l~~ 109 (111)
T 3d6w_A 62 HRSFIVNVNHIKAIYPDTHSTFLLSMDNGERVPVSQSYASYFRKLLGF 109 (111)
T ss_dssp ETTEEEEGGGEEEEECCSSSCEEEEETTSCEEEECTTTHHHHHHHHTC
T ss_pred ehhhEEeHHHHhhecccCCCcEEEEEcCCcEEEEeHHHHHHHHHHHcc
Confidence 67899999999999764 3345554222 3445666666665543
No 4
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=47.76 E-value=7.7 Score=22.68 Aligned_cols=8 Identities=88% Similarity=1.938 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 032866 7 GGGGGGGP 14 (131)
Q Consensus 7 ~~~~~~~~ 14 (131)
+||||||.
T Consensus 14 gggggggs 21 (37)
T 2i9o_A 14 GGGGGGGS 21 (37)
T ss_dssp SCCCCSCS
T ss_pred CCCCCcch
Confidence 33344443
No 5
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=43.32 E-value=17 Score=26.20 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=15.3
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-.|.|++.|++|..+.++
T Consensus 48 ~sRhW~Itd~~g~~~eV~ 65 (127)
T 2f1e_A 48 VARHWQITDGNGRTEQVD 65 (127)
T ss_dssp EEEEEEEEETTSCEEEEE
T ss_pred EeceEEEEeCCCCEEEEE
Confidence 468999999999987764
No 6
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=42.71 E-value=18 Score=26.07 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.2
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-.|.|++.|++|..+.++
T Consensus 47 ~sRhW~Itd~~g~~~eV~ 64 (126)
T 1xvs_A 47 MSRRWLITDADGKQTVVE 64 (126)
T ss_dssp EEEEEEEEETTCCEEEEE
T ss_pred EecEEEEEeCCCCEEEEE
Confidence 468999999999987654
No 7
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=41.66 E-value=19 Score=26.35 Aligned_cols=18 Identities=17% Similarity=0.577 Sum_probs=15.2
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-.|.|++.|++|..+.++
T Consensus 47 ~sRhW~Itd~~g~~~eV~ 64 (134)
T 1tza_A 47 ETRHWIITDANGKTSEVQ 64 (134)
T ss_dssp EEEEEEEEETTSCEEEEE
T ss_pred EecEEEEEeCCCCEEEEE
Confidence 468999999999987764
No 8
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=39.97 E-value=21 Score=26.27 Aligned_cols=18 Identities=11% Similarity=0.291 Sum_probs=15.2
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-.|.|++.|++|..+.++
T Consensus 52 ~sRhW~ItD~~G~~~eV~ 69 (139)
T 1xq4_A 52 ISRHWIITDGEERVQEVR 69 (139)
T ss_dssp EEEEEEEECTTSCEEEEE
T ss_pred EecEEEEEeCCCCEEEEE
Confidence 468999999999987764
No 9
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=37.51 E-value=11 Score=24.18 Aligned_cols=6 Identities=100% Similarity=2.195 Sum_probs=2.3
Q ss_pred CCCCCC
Q 032866 8 GGGGGG 13 (131)
Q Consensus 8 ~~~~~~ 13 (131)
||||||
T Consensus 30 gggggg 35 (62)
T 2i7u_A 30 GGGGGG 35 (62)
T ss_dssp SCSSSC
T ss_pred CCCchH
Confidence 333333
No 10
>4g4k_A Accessory gene regulator protein A; AGRA, response regulator, activator, transcription factor, phosphoprotein, transcription regulation; 1.52A {Staphylococcus aureus} PDB: 3bs1_A
Probab=34.90 E-value=22 Score=23.19 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=19.5
Q ss_pred Eec-CCeEEEecccceeEeeeCeEEEec
Q 032866 73 LGR-ELAVVINLEHVKAIVTAKEVFDAL 99 (131)
Q Consensus 73 LvR-e~aIvvNLe~IRAIItaD~Vllfd 99 (131)
+.| .+..|||+.+|+.|-.....+.++
T Consensus 61 F~rihrS~iVN~~~I~~i~~~~~~v~l~ 88 (103)
T 4g4k_A 61 FFRCHNSFVVNRHNIESIDSKERIVYFK 88 (103)
T ss_dssp EEEEETTEEEEGGGEEEEETTTTEEEET
T ss_pred hEEEcceEEEchHHeeEEcCCceEEEEc
Confidence 444 678999999999997654344453
No 11
>3bs1_A Accessory gene regulator protein A; lyttr, AGRA, response regulator, DNA binding domain; HET: DNA BRU; 1.60A {Staphylococcus aureus}
Probab=33.78 E-value=24 Score=22.83 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=17.1
Q ss_pred CCeEEEecccceeEeeeCeEEEec
Q 032866 76 ELAVVINLEHVKAIVTAKEVFDAL 99 (131)
Q Consensus 76 e~aIvvNLe~IRAIItaD~Vllfd 99 (131)
.+..||||.+|+.|-..+..+.++
T Consensus 65 hRS~iVNl~~I~~i~~~~~~v~l~ 88 (103)
T 3bs1_A 65 HNSFVVNRHNIESIDSKERIVYFK 88 (103)
T ss_dssp ETTEEEEGGGEEEEETTTTEEEET
T ss_pred eeEEEEChHHeeEEcCCCcEEEEc
Confidence 678899999999986543244443
No 12
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.80 E-value=1.1e+02 Score=20.04 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.4
Q ss_pred HHHHHHHcCCCCccccCc
Q 032866 45 KHVIMRRTGLPARDLRVL 62 (131)
Q Consensus 45 K~~l~~~~gL~~RDLR~l 62 (131)
|..|..+.|+++-+.|++
T Consensus 43 K~~I~~~~gip~~~qrLi 60 (106)
T 1wx7_A 43 KEEISQRFKAHPDQLVLI 60 (106)
T ss_dssp HHHHHHHHTCCTTTEEEE
T ss_pred HHHHHHHHCcChhhEEEE
Confidence 788888999999999854
No 13
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=24.61 E-value=43 Score=24.74 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=34.7
Q ss_pred CCCCCCceeEEEEcCCCCeEEEEecHHHHHHHcCCCCccccCcCCCC-CcCceeEecCCeEEEecccce
Q 032866 20 PRKGMGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLRVLDPLL-SYPSSILGRELAVVINLEHVK 87 (131)
Q Consensus 20 ~k~~~~~~~w~~fD~~G~~~~~e~~K~~l~~~~gL~~RDLR~lDp~~-~~~psILvRe~aIvvNLe~IR 87 (131)
.|.....++|.++|+.|..- .|-+ ..-+.=|| ...- .|.|++-+=+..||||-|.|.
T Consensus 6 ~~~~~~~r~W~viDA~g~~L----GRLA-----s~iAk~L~--GKhKp~ytP~~d~Gd~VVViNaeki~ 63 (142)
T 3r8s_J 6 AKPETVKRDWYVVDATGKTL----GRLA-----TELARRLR--GKHKAEYTPHVDTGDYIIVLNADKVA 63 (142)
T ss_dssp CCTTTCCCCEEEEECTTCBH----HHHH-----HHHHHHHH--TTTSTTCCTTSCCCCEEEEECGGGCB
T ss_pred CChhhccCcEEEEeCCCCch----HHHH-----HHHHHHHc--CCCCCccCCCccCCCEEEEEeCcccC
Confidence 34555689999999999852 1110 00111122 1111 457788888999999999664
No 14
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=22.63 E-value=99 Score=20.98 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=21.8
Q ss_pred eEEEEcCCCCeEEE--EecHHHHHHHcCCCC
Q 032866 28 TWLVVSESGQSRVE--EVGKHVIMRRTGLPA 56 (131)
Q Consensus 28 ~w~~fD~~G~~~~~--e~~K~~l~~~~gL~~ 56 (131)
.++.|+ +|.+... -.+-..+++++|||+
T Consensus 122 ~v~~~~-dGkI~~~~~y~D~~~ll~QlGlp~ 151 (158)
T 4h3u_A 122 TLLRTR-GEEITSDQDYYSLSSVLAQSGLPA 151 (158)
T ss_dssp EEEEEE-TTEEEEEEEEECHHHHHHHHTCCT
T ss_pred EEEEEE-CCEEEEEEEEECHHHHHHHcCCCC
Confidence 445565 7988663 589999999999986
No 15
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.50 E-value=1.5e+02 Score=18.68 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=20.4
Q ss_pred CCeEEEEec--------HHHHHHHcCCCCccccCc
Q 032866 36 GQSRVEEVG--------KHVIMRRTGLPARDLRVL 62 (131)
Q Consensus 36 G~~~~~e~~--------K~~l~~~~gL~~RDLR~l 62 (131)
|....++++ |..|....++++-+.|++
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 60 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI 60 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE
Confidence 665555443 788888999999999864
No 16
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=21.99 E-value=1.2e+02 Score=23.94 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=23.4
Q ss_pred EEEEcCCCCeEEEEecH--------HHHHHHcCCCCccccCc
Q 032866 29 WLVVSESGQSRVEEVGK--------HVIMRRTGLPARDLRVL 62 (131)
Q Consensus 29 w~~fD~~G~~~~~e~~K--------~~l~~~~gL~~RDLR~l 62 (131)
-+.+..+|+...+.+.+ ..++.+.|++++.+|.+
T Consensus 59 nLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL 100 (207)
T 3tix_A 59 NLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL 100 (207)
T ss_dssp EEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE
T ss_pred EEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE
Confidence 34444588877777664 34556789999999943
No 17
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=20.70 E-value=1.3e+02 Score=19.72 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=25.0
Q ss_pred CCCCceeEEEEcCCCCeEEEEecHHHHHH--HcCCCCcccc
Q 032866 22 KGMGLRTWLVVSESGQSRVEEVGKHVIMR--RTGLPARDLR 60 (131)
Q Consensus 22 ~~~~~~~w~~fD~~G~~~~~e~~K~~l~~--~~gL~~RDLR 60 (131)
.......|.-.|.+|++. =-++-.++.+ +.|..+-||+
T Consensus 13 ~~~~~~~W~Y~Dp~g~iQ-GPFs~~~M~~W~~~GyF~~~L~ 52 (78)
T 1wh2_A 13 YDKEKLNWLYKDPQGLVQ-GPFSLTQLKAWSDAEYFTKQFR 52 (78)
T ss_dssp CCSSSCCEEEECTTSCEE-EEECHHHHHHHHTTTSSCSCCE
T ss_pred CCcccCeEEEECCCCCCc-CCcCHHHHHHHHHcCCCCCCce
Confidence 345567999999999954 3344444444 4576666665
Done!