Query 032866
Match_columns 131
No_of_seqs 103 out of 235
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032866.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032866hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uh6a_ d.15.1.1 (A:) Ubiquiti 53.8 18 0.0013 23.0 6.0 49 14-62 16-72 (100)
2 d1xq4a_ b.1.23.1 (A:) ApaG {Bo 42.2 8.8 0.00064 25.9 2.9 18 25-42 46-63 (123)
3 d1tzaa_ b.1.23.1 (A:) ApaG {Sh 40.6 9.3 0.00068 26.1 2.9 18 25-42 45-62 (132)
4 d1xvsa_ b.1.23.1 (A:) ApaG {Vi 33.7 14 0.001 24.8 2.9 18 25-42 47-64 (124)
5 d2gexa1 d.17.4.9 (A:2-139) Nog 33.3 21 0.0015 22.2 3.6 29 28-56 105-135 (138)
6 d2gych1 c.21.1.1 (H:1-140) Rib 28.0 6.5 0.00047 27.2 0.2 57 21-87 7-63 (140)
7 d2exna1 b.165.1.1 (A:1-128) Hy 26.1 12 0.00089 24.6 1.4 17 23-39 21-37 (128)
8 d2geya1 d.17.4.9 (A:2-145) Put 21.0 40 0.0029 21.1 3.2 29 28-57 104-134 (144)
9 d1m94a_ d.15.1.1 (A:) Ubiquiti 19.9 65 0.0047 18.6 3.9 34 29-62 4-45 (73)
10 d2f99a1 d.17.4.9 (A:2-141) Akl 18.5 62 0.0045 20.1 3.8 30 26-56 104-135 (140)
No 1
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.78 E-value=18 Score=23.05 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCCceeEEEEcCCCCeEEEEec--------HHHHHHHcCCCCccccCc
Q 032866 14 PTATPRPRKGMGLRTWLVVSESGQSRVEEVG--------KHVIMRRTGLPARDLRVL 62 (131)
Q Consensus 14 ~~~~~~~k~~~~~~~w~~fD~~G~~~~~e~~--------K~~l~~~~gL~~RDLR~l 62 (131)
+.+|..+......-..++-|..|....+++. |..|..+.|+|+-..|++
T Consensus 16 ~~~p~~~~~~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi 72 (100)
T d1uh6a_ 16 SLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK 72 (100)
T ss_dssp SSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred cccCCCCCCCCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEE
Confidence 3444444444444577777899998877654 889999999999999854
No 2
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}
Probab=42.22 E-value=8.8 Score=25.89 Aligned_cols=18 Identities=11% Similarity=0.291 Sum_probs=15.2
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-+|.|.++|.+|+...++
T Consensus 46 ~sR~W~I~d~~g~~~eV~ 63 (123)
T d1xq4a_ 46 ISRHWIITDGEERVQEVR 63 (123)
T ss_dssp EEEEEEEECTTSCEEEEE
T ss_pred EeeeEEEEeCCCCEEEcc
Confidence 479999999999987753
No 3
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
Probab=40.60 E-value=9.3 Score=26.13 Aligned_cols=18 Identities=17% Similarity=0.577 Sum_probs=15.3
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-+|.|.++|.+|+.+.++
T Consensus 45 lsR~W~I~d~~G~~~eV~ 62 (132)
T d1tzaa_ 45 ETRHWIITDANGKTSEVQ 62 (132)
T ss_dssp EEEEEEEEETTSCEEEEE
T ss_pred EeeEEEEECCCCCEEEEe
Confidence 479999999999987654
No 4
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}
Probab=33.66 E-value=14 Score=24.76 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.4
Q ss_pred CceeEEEEcCCCCeEEEE
Q 032866 25 GLRTWLVVSESGQSRVEE 42 (131)
Q Consensus 25 ~~~~w~~fD~~G~~~~~e 42 (131)
-.|.|.+.|.+|+.+.++
T Consensus 47 lsR~W~I~d~~g~~~~V~ 64 (124)
T d1xvsa_ 47 MSRRWLITDADGKQTVVE 64 (124)
T ss_dssp EEEEEEEEETTCCEEEEE
T ss_pred EeeEEEEEeCCCCEEEec
Confidence 479999999999987765
No 5
>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}
Probab=33.28 E-value=21 Score=22.20 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=22.9
Q ss_pred eEEEEcCCCCeEE--EEecHHHHHHHcCCCC
Q 032866 28 TWLVVSESGQSRV--EEVGKHVIMRRTGLPA 56 (131)
Q Consensus 28 ~w~~fD~~G~~~~--~e~~K~~l~~~~gL~~ 56 (131)
....|+++|.+.. .-+|-..+++++|+.|
T Consensus 105 ~~~~~~d~GkI~e~~~~~D~~~~~~QlG~~P 135 (138)
T d2gexa1 105 EELRFSEAGKVVEHWDVFNFSPLFRDLGVVP 135 (138)
T ss_dssp EEEEECTTSCEEEEEEEEECHHHHHHSTTCH
T ss_pred EEEEEccCCEEEEEEEEECHHHHHHHcCCCC
Confidence 3455688899865 3699999999999876
No 6
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]}
Probab=27.97 E-value=6.5 Score=27.23 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=35.4
Q ss_pred CCCCCceeEEEEcCCCCeEEEEecHHHHHHHcCCCCccccCcCCCCCcCceeEecCCeEEEecccce
Q 032866 21 RKGMGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLRVLDPLLSYPSSILGRELAVVINLEHVK 87 (131)
Q Consensus 21 k~~~~~~~w~~fD~~G~~~~~e~~K~~l~~~~gL~~RDLR~lDp~~~~~psILvRe~aIvvNLe~IR 87 (131)
|...-.+.|.++|++|.+- -+-...-+.=|+==+.. .|.|++-+=+..||||-++|.
T Consensus 7 k~~~~~r~W~viDA~~~~l---------GRlAs~iA~~L~GK~kp-~y~p~~d~Gd~VvViNaeki~ 63 (140)
T d2gych1 7 KPETVKRDWYVVDATGKTL---------GRLATELARRLRGKHKA-EYTPHVDTGDYIIVLNADKVA 63 (140)
T ss_dssp SSCCTTCCCCCCCCSSSCS---------HHHHSSSSSSSTTCSSS-CCCSSSCCCCCCCCSCSSSCC
T ss_pred ChhHhCccEEEEeCCCCch---------HHHHHHHHHHHHhccCC-ccccccCCCcEEEEEechhhc
Confidence 3344578999999999741 22222223333311111 467788888999999999764
No 7
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=26.10 E-value=12 Score=24.58 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=13.9
Q ss_pred CCCceeEEEEcCCCCeE
Q 032866 23 GMGLRTWLVVSESGQSR 39 (131)
Q Consensus 23 ~~~~~~w~~fD~~G~~~ 39 (131)
-.--|.||++|++|+..
T Consensus 21 l~~DR~wmlvd~~G~fl 37 (128)
T d2exna1 21 AAYQKRWLVANDAGQWL 37 (128)
T ss_dssp GGTCCSEEEEETTSCEE
T ss_pred hhhceeEEEECCCCCEE
Confidence 34579999999999864
No 8
>d2geya1 d.17.4.9 (A:2-145) Putative hydroxylase AclR {Streptomyces galilaeus [TaxId: 33899]}
Probab=20.97 E-value=40 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=21.2
Q ss_pred eEEEEcCCCCeEE--EEecHHHHHHHcCCCCc
Q 032866 28 TWLVVSESGQSRV--EEVGKHVIMRRTGLPAR 57 (131)
Q Consensus 28 ~w~~fD~~G~~~~--~e~~K~~l~~~~gL~~R 57 (131)
.+..| .+|.+.. .-++...+++++|+.|-
T Consensus 104 ~~~~~-~dGkI~e~~~~~D~~~~~~QLG~~p~ 134 (144)
T d2geya1 104 EELRF-VDGKVVEHWDVINMRPLLVRLGKLPD 134 (144)
T ss_dssp EEEEE-ETTEEEEEEEEEECHHHHHHTTSSCC
T ss_pred EEEEE-ECCEEEEEEEeeCHHHHHHHCCCCCC
Confidence 33445 4788755 46999999999998653
No 9
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.92 E-value=65 Score=18.55 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=25.7
Q ss_pred EEEEcCCCCeEEEEec--------HHHHHHHcCCCCccccCc
Q 032866 29 WLVVSESGQSRVEEVG--------KHVIMRRTGLPARDLRVL 62 (131)
Q Consensus 29 w~~fD~~G~~~~~e~~--------K~~l~~~~gL~~RDLR~l 62 (131)
.++=+..|+...+++. |..+..+.|++|-+.|.+
T Consensus 4 i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li 45 (73)
T d1m94a_ 4 VVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQ 45 (73)
T ss_dssp EEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEE
T ss_pred EEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEE
Confidence 3455667877666544 888999999999999854
No 10
>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase, AknH {Streptomyces galilaeus [TaxId: 33899]}
Probab=18.52 E-value=62 Score=20.13 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=22.3
Q ss_pred ceeEEEEcCCCCeEE--EEecHHHHHHHcCCCC
Q 032866 26 LRTWLVVSESGQSRV--EEVGKHVIMRRTGLPA 56 (131)
Q Consensus 26 ~~~w~~fD~~G~~~~--~e~~K~~l~~~~gL~~ 56 (131)
...+..| .+|.+.. ..+|-..+++++|.++
T Consensus 104 ~~~~~~~-~dGkI~e~~~~~D~~~~~~QLG~~~ 135 (140)
T d2f99a1 104 QIHLLHF-VDGKIHHHRDWPDYQGTYRQLGEPW 135 (140)
T ss_dssp EEEEEEE-ETTEEEEEEEEECHHHHHHHTTCCC
T ss_pred EEEeeEE-ECCEEEEEEEeeCHHHHHHHCCCCC
Confidence 4445556 5788865 4699999999999864
Done!