BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032868
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic
OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1
Length = 182
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 70/121 (57%), Gaps = 18/121 (14%)
Query: 1 MEATSLISLSSFAAGASSLPPVLCPHGN------NRRGLLSLTVDQQRCDNIGFISSKIL 54
ME T+ + S +S++ P L G+ RRG++ V R N + +
Sbjct: 1 METTAFNTTSRIGNWSSAISPPLQTCGSFKCQLPTRRGVI---VADLRNSNFRWRKATTT 57
Query: 55 SFCPKASLRGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
S RGN+ EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPY
Sbjct: 58 S-------RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPY 110
Query: 113 M 113
M
Sbjct: 111 M 111
>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis
thaliana GN=STR16 PE=1 SV=2
Length = 120
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMD 114
VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM+
Sbjct: 7 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMN 50
>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2
SV=1
Length = 183
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
PTSVPVRVA EL QAG+++LDVRTP+EFS GH + AINVPYM
Sbjct: 71 PTSVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRAINVPYM 112
>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18
PE=1 SV=1
Length = 136
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYM 113
SV V A LLQ+GH+YLDVRT +EF GH A +N+PYM
Sbjct: 16 SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYM 57
>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial
OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
+V V A L GHRYLDVRT EEF+ H A+N+PYM
Sbjct: 43 TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYM 82
>sp|A1S1Z4|SELU_SHEAM tRNA 2-selenouridine synthase OS=Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B) GN=selU PE=3 SV=1
Length = 367
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+VP + E+ GH +DVR P EFS G A+N+P M D E + G
Sbjct: 4 NTVPAKQYREIFLKGHPIMDVRAPIEFSKGAFPNAVNLPLMTDSERQKVG 53
>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana
GN=STR17 PE=2 SV=1
Length = 156
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGH--ATGAINVPYM 113
++ V A +LL +G+ +LDVRT EEF GH + NVPY
Sbjct: 34 TIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYW 75
>sp|A0KRK0|SELU_SHESA tRNA 2-selenouridine synthase OS=Shewanella sp. (strain ANA-3)
GN=selU PE=3 SV=1
Length = 365
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+P + H++ AG +D+R P EF G ++N+P M DKE E G
Sbjct: 6 IPAQQYHDIFIAGQPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVG 53
>sp|Q0I0D0|SELU_SHESR tRNA 2-selenouridine synthase OS=Shewanella sp. (strain MR-7)
GN=selU PE=3 SV=1
Length = 369
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+P + H++ AG +D+R P EF G ++N+P M DKE E G
Sbjct: 6 IPAQQYHDIFIAGQPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVG 53
>sp|B2AGP0|SELU_CUPTR tRNA 2-selenouridine synthase OS=Cupriavidus taiwanensis (strain R1
/ LMG 19424) GN=selU PE=3 SV=1
Length = 368
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 82 ELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
EL +G LDVR P EF+ G GA+N+P MDD E G
Sbjct: 10 ELFLSGVAMLDVRAPLEFARGAFPGAVNLPLMDDAERHEVG 50
>sp|Q0HNW2|SELU_SHESM tRNA 2-selenouridine synthase OS=Shewanella sp. (strain MR-4)
GN=selU PE=3 SV=1
Length = 384
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+P + H++ AG +D+R P EF G ++N+P M DKE E G
Sbjct: 6 IPAQQYHDIFVAGKPLIDLRAPIEFDRGAFPSSVNLPLMVDKEREKVG 53
>sp|A9I3Z9|SELU_BORPD tRNA 2-selenouridine synthase OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=selU PE=3 SV=1
Length = 374
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
LD R P EFS G GA+N+P MDD E + G
Sbjct: 19 LDTRAPTEFSKGAFPGAVNLPLMDDAERQQVG 50
>sp|A8G1H1|SELU_SHESH tRNA 2-selenouridine synthase OS=Shewanella sediminis (strain
HAW-EB3) GN=selU PE=3 SV=1
Length = 369
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
VP E++ +GH +DVR P EF+ G + N+P M D E + G
Sbjct: 6 VPKSAYREIMLSGHPMMDVRAPIEFNKGAFPSSTNLPLMQDSERQKVG 53
>sp|Q8EKA0|SELU_SHEON tRNA 2-selenouridine synthase OS=Shewanella oneidensis (strain
MR-1) GN=selU PE=3 SV=1
Length = 376
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
T +P + ++ AG +D+R P EF+ G ++N+P M DKE E G
Sbjct: 4 TLIPAQQYRDIFVAGKPLIDLRAPIEFNRGAFPSSVNLPLMVDKEREKVG 53
>sp|P23857|PSPE_ECOLI Thiosulfate sulfurtransferase PspE OS=Escherichia coli (strain K12)
GN=pspE PE=1 SV=1
Length = 104
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 86 AGHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117
A ++DVR PE++ H GAIN+P + KE
Sbjct: 19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKE 50
>sp|Q0KEU1|SELU_CUPNH tRNA 2-selenouridine synthase OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=selU PE=3 SV=1
Length = 367
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
L +G LDVR P EF+ G GA+N+P MDD E G
Sbjct: 11 LFLSGVAMLDVRAPLEFARGAFPGAVNLPLMDDAERHEVG 50
>sp|Q1R084|SELU_CHRSD tRNA 2-selenouridine synthase OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=selU
PE=3 SV=1
Length = 361
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF+ G GA+N+P MDD E G
Sbjct: 18 IDVRAPVEFARGALPGAVNLPLMDDAERHAVG 49
>sp|Q6MK43|SELU_BDEBA tRNA 2-selenouridine synthase OS=Bdellovibrio bacteriovorus (strain
ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=selU PE=3
SV=2
Length = 379
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
L Q +DVR P EFS G GA+N+P M+D E G
Sbjct: 14 LFQQNIPLMDVRAPVEFSQGSIPGAVNLPVMNDDERAQVG 53
>sp|A1WIC3|SELU_VEREI tRNA 2-selenouridine synthase OS=Verminephrobacter eiseniae (strain
EF01-2) GN=selU PE=3 SV=1
Length = 365
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
LDVR P EF+ G GA+N P MDD E G
Sbjct: 19 LDVRAPVEFAQGAFPGAVNHPLMDDAERHQVG 50
>sp|Q82WE9|SELU_NITEU tRNA 2-selenouridine synthase OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=selU PE=3 SV=1
Length = 385
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF+ G GA+N+P ++D+E + G
Sbjct: 22 IDVRAPVEFTQGSLPGAVNLPILNDEERALVG 53
>sp|A9MLB3|SELU_SALAR tRNA 2-selenouridine synthase OS=Salmonella arizonae (strain ATCC
BAA-731 / CDC346-86 / RSK2980) GN=selU PE=3 SV=1
Length = 361
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 81 HELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
H LL A +DVR P EF G GAIN+P M D E G
Sbjct: 8 HALLIADTPLIDVRAPIEFQQGAMPGAINLPLMMDDERAAVG 49
>sp|Q476K0|SELU_CUPPJ tRNA 2-selenouridine synthase OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=selU PE=3 SV=1
Length = 366
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
L +G +DVR P EF+ G G +N+P MDD+E G
Sbjct: 11 LFLSGTPMMDVRAPLEFARGAFPGTVNLPLMDDEERHQVG 50
>sp|B1KN07|SELU_SHEWM tRNA 2-selenouridine synthase OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=selU PE=3 SV=1
Length = 368
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+P E++ +GH +DVR P EF G + N P M D E + G
Sbjct: 6 IPKTTYQEIMLSGHPMIDVRAPIEFDKGAFPSSSNFPLMQDSERQRVG 53
>sp|Q12SQ2|SELU_SHEDO tRNA 2-selenouridine synthase OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=selU PE=3 SV=1
Length = 367
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF+ G AIN+P M D E E G
Sbjct: 22 IDVRAPIEFTKGAFPSAINLPLMKDSEREKVG 53
>sp|P54510|YQHL_BACSU Uncharacterized protein YqhL OS=Bacillus subtilis (strain 168)
GN=yqhL PE=4 SV=2
Length = 126
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 79 VAHELLQAGHR---YLDVRTPEEFSAGHATGAINVP 111
+ E +AG+R +DVR P EF GH GA N+P
Sbjct: 31 LTEEEFRAGYRKAQLIDVREPNEFEGGHILGARNIP 66
>sp|A8GFD0|SELU_SERP5 tRNA 2-selenouridine synthase OS=Serratia proteamaculans (strain
568) GN=selU PE=3 SV=1
Length = 372
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G A+N+P M+D E + G
Sbjct: 24 IDVRAPVEFQQGAFANAVNLPLMNDDERQAVG 55
>sp|Q30RE2|SELU_SULDN tRNA 2-selenouridine synthase OS=Sulfurimonas denitrificans (strain
ATCC 33889 / DSM 1251) GN=selU PE=3 SV=1
Length = 364
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
LDVR P EF G A+N+P M+D+E G
Sbjct: 19 LDVRAPVEFKKGAFLNAVNLPIMNDEERHKIG 50
>sp|A6QBB6|SELU_SULNB tRNA 2-selenouridine synthase OS=Sulfurovum sp. (strain NBC37-1)
GN=selU PE=3 SV=1
Length = 364
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF+ G A+N+P M+D+E + G
Sbjct: 21 IDVRAPVEFAKGAFPHAVNLPLMNDEERHVVG 52
>sp|B0KPF4|SELU_PSEPG tRNA 2-selenouridine synthase OS=Pseudomonas putida (strain GB-1)
GN=selU PE=3 SV=1
Length = 370
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+D+R P EF+ G G +N+P M+D+E + G
Sbjct: 19 MDMRAPVEFAKGAFPGVVNLPLMNDQERQKVG 50
>sp|Q88PM7|SELU_PSEPK tRNA 2-selenouridine synthase OS=Pseudomonas putida (strain KT2440)
GN=selU PE=3 SV=1
Length = 370
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+D+R P EF+ G G +N+P M+D+E + G
Sbjct: 19 MDMRAPVEFAKGAFPGVVNLPLMNDQERQKVG 50
>sp|A7MJZ3|SELU_CROS8 tRNA 2-selenouridine synthase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=selU PE=3 SV=1
Length = 377
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF+ G GAIN+P M++ E G
Sbjct: 25 IDVRAPVEFAQGAMPGAINLPLMNNDERAAVG 56
>sp|A5VYQ1|SELU_PSEP1 tRNA 2-selenouridine synthase OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=selU PE=3 SV=1
Length = 370
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+D+R P EF+ G G +N+P M+D+E + G
Sbjct: 19 MDMRAPVEFAKGAFPGVVNLPLMNDQERQKVG 50
>sp|Q1IEL0|SELU_PSEE4 tRNA 2-selenouridine synthase OS=Pseudomonas entomophila (strain
L48) GN=selU PE=3 SV=1
Length = 371
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+D+R P EF+ G G +N+P M+D+E + G
Sbjct: 19 MDMRAPIEFTKGAFPGVVNLPLMNDQERQKVG 50
>sp|P51335|MOEB_PORPU Probable molybdopterin-synthase adenylyltransferase OS=Porphyra
purpurea GN=moeB PE=3 SV=1
Length = 382
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 77 VRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMDDKE 117
+ + +EL + +Y LDVR+ EE+ H A+N+P D K+
Sbjct: 279 IELQNELYRNSFKYIILDVRSKEEYEESHLDKAVNLPIKDMKK 321
>sp|B5EYB4|SELU_SALA4 tRNA 2-selenouridine synthase OS=Salmonella agona (strain SL483)
GN=selU PE=3 SV=1
Length = 364
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDNERAAVG 52
>sp|Q8Z8R4|SELU_SALTI tRNA 2-selenouridine synthase OS=Salmonella typhi GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|B5QUA2|SELU_SALEP tRNA 2-selenouridine synthase OS=Salmonella enteritidis PT4 (strain
P125109) GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|B4TMJ2|SELU_SALSV tRNA 2-selenouridine synthase OS=Salmonella schwarzengrund (strain
CVM19633) GN=selU PE=3 SV=1
Length = 361
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 18 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 49
>sp|Q8ZR88|SELU_SALTY tRNA 2-selenouridine synthase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=selU PE=1 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|Q9S4Y8|SELU_SALEN tRNA 2-selenouridine synthase OS=Salmonella enteritidis GN=selU
PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|B5FLM4|SELU_SALDC tRNA 2-selenouridine synthase OS=Salmonella dublin (strain
CT_02021853) GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|C0PVG5|SELU_SALPC tRNA 2-selenouridine synthase OS=Salmonella paratyphi C (strain
RKS4594) GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|B4SXL9|SELU_SALNS tRNA 2-selenouridine synthase OS=Salmonella newport (strain SL254)
GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|Q57S51|SELU_SALCH tRNA 2-selenouridine synthase OS=Salmonella choleraesuis (strain
SC-B67) GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|B4T9K6|SELU_SALHS tRNA 2-selenouridine synthase OS=Salmonella heidelberg (strain
SL476) GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|B5BD19|SELU_SALPK tRNA 2-selenouridine synthase OS=Salmonella paratyphi A (strain
AKU_12601) GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|Q5PCH1|SELU_SALPA tRNA 2-selenouridine synthase OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMMDDERAAVG 52
>sp|B5R637|SELU_SALG2 tRNA 2-selenouridine synthase OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=selU PE=3 SV=1
Length = 364
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+DVR P EF G GAIN+P M D E G
Sbjct: 21 IDVRAPIEFEQGAMPGAINLPLMIDDERAAVG 52
>sp|Q889F6|SELU_PSESM tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=selU PE=3 SV=1
Length = 366
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+D R P EFS G G IN+P M+D E + G
Sbjct: 19 MDARAPVEFSKGAFPGVINLPLMNDIERQKVG 50
>sp|Q4ZYK5|SELU_PSEU2 tRNA 2-selenouridine synthase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=selU PE=3 SV=1
Length = 366
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122
+D R P EFS G G IN+P M+D E + G
Sbjct: 19 MDARAPVEFSKGAFPGVINLPLMNDIERQKVG 50
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,618,930
Number of Sequences: 539616
Number of extensions: 1734673
Number of successful extensions: 4607
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4479
Number of HSP's gapped (non-prelim): 140
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)