Query 032868
Match_columns 131
No_of_seqs 171 out of 1211
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:56:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07878 molybdopterin biosynt 99.1 2E-10 4.3E-15 96.6 6.2 80 33-117 251-333 (392)
2 PRK07411 hypothetical protein; 99.1 2.2E-10 4.8E-15 96.4 5.8 80 33-117 243-329 (390)
3 KOG1530 Rhodanese-related sulf 99.0 2.4E-10 5.3E-15 83.6 4.2 58 71-130 21-79 (136)
4 cd01520 RHOD_YbbB Member of th 99.0 3.8E-10 8.2E-15 80.7 4.8 42 75-116 1-42 (128)
5 cd01518 RHOD_YceA Member of th 99.0 2.1E-10 4.6E-15 78.3 3.2 44 74-117 3-47 (101)
6 cd01534 4RHOD_Repeat_3 Member 99.0 2.6E-10 5.6E-15 77.2 2.9 43 75-117 1-46 (95)
7 cd01523 RHOD_Lact_B Member of 99.0 5E-10 1.1E-14 76.2 4.3 43 75-117 1-45 (100)
8 cd01527 RHOD_YgaP Member of th 99.0 8E-10 1.7E-14 74.9 4.6 46 73-118 2-47 (99)
9 cd01533 4RHOD_Repeat_2 Member 99.0 5.6E-10 1.2E-14 77.3 3.6 48 70-117 7-56 (109)
10 cd01525 RHOD_Kc Member of the 98.9 1.1E-09 2.5E-14 74.6 3.5 42 75-116 1-45 (105)
11 cd01519 RHOD_HSP67B2 Member of 98.9 1.7E-09 3.6E-14 73.8 3.5 42 76-117 2-45 (106)
12 cd01443 Cdc25_Acr2p Cdc25 enzy 98.8 2.3E-09 5E-14 74.8 3.4 44 73-117 2-52 (113)
13 cd01526 RHOD_ThiF Member of th 98.8 2.8E-09 6E-14 75.5 3.6 46 72-117 7-54 (122)
14 cd01524 RHOD_Pyr_redox Member 98.8 2.2E-09 4.9E-14 71.9 2.8 42 75-116 1-42 (90)
15 PRK00162 glpE thiosulfate sulf 98.8 4.2E-09 9.1E-14 72.7 3.6 46 71-116 3-49 (108)
16 cd01521 RHOD_PspE2 Member of t 98.8 4.1E-09 8.8E-14 73.3 3.5 44 73-116 8-54 (110)
17 cd01530 Cdc25 Cdc25 phosphatas 98.8 6.4E-09 1.4E-13 74.1 4.5 45 73-117 2-54 (121)
18 cd01522 RHOD_1 Member of the R 98.8 8.7E-09 1.9E-13 72.7 4.2 43 75-117 1-46 (117)
19 cd01528 RHOD_2 Member of the R 98.8 6.5E-09 1.4E-13 70.9 3.2 44 74-117 1-47 (101)
20 PRK05600 thiamine biosynthesis 98.7 9.4E-09 2E-13 86.2 4.5 68 32-117 248-319 (370)
21 KOG2017 Molybdopterin synthase 98.7 8.9E-09 1.9E-13 86.2 4.0 68 53-120 293-366 (427)
22 PF00581 Rhodanese: Rhodanese- 98.7 8.2E-09 1.8E-13 70.0 2.7 40 76-115 1-41 (113)
23 PLN02160 thiosulfate sulfurtra 98.7 1.8E-08 4E-13 73.3 4.7 44 72-115 14-59 (136)
24 cd01531 Acr2p Eukaryotic arsen 98.7 1.1E-08 2.4E-13 71.3 3.0 44 73-117 2-48 (113)
25 cd01449 TST_Repeat_2 Thiosulfa 98.7 1.2E-08 2.6E-13 70.9 3.1 43 75-117 1-55 (118)
26 cd01448 TST_Repeat_1 Thiosulfa 98.7 1.9E-08 4.2E-13 70.5 4.1 43 75-117 2-52 (122)
27 cd01447 Polysulfide_ST Polysul 98.7 2.3E-08 5E-13 67.5 4.4 42 75-116 1-44 (103)
28 PRK11784 tRNA 2-selenouridine 98.7 1.8E-08 3.8E-13 84.0 4.3 50 76-125 4-53 (345)
29 cd01444 GlpE_ST GlpE sulfurtra 98.6 2.9E-08 6.2E-13 66.4 3.3 42 75-116 2-47 (96)
30 PRK05320 rhodanese superfamily 98.6 4.7E-08 1E-12 78.4 3.9 48 70-117 107-161 (257)
31 TIGR03167 tRNA_sel_U_synt tRNA 98.5 5.5E-08 1.2E-12 80.0 2.9 39 88-126 3-41 (311)
32 PRK01415 hypothetical protein; 98.5 9.6E-08 2.1E-12 76.5 4.1 47 71-117 110-157 (247)
33 cd01529 4RHOD_Repeats Member o 98.5 9.2E-08 2E-12 64.6 2.2 30 87-116 12-41 (96)
34 cd01446 DSP_MapKP N-terminal r 98.5 1.9E-07 4.1E-12 66.6 4.0 41 75-115 2-45 (132)
35 PRK00142 putative rhodanese-re 98.4 2.1E-07 4.5E-12 76.6 4.0 47 71-117 110-157 (314)
36 PRK08762 molybdopterin biosynt 98.4 1.8E-07 3.9E-12 78.1 3.3 46 72-117 2-47 (376)
37 smart00450 RHOD Rhodanese Homo 98.4 1.5E-07 3.3E-12 61.7 2.1 33 86-118 3-35 (100)
38 cd01532 4RHOD_Repeat_1 Member 98.4 1.4E-07 3E-12 63.7 1.4 31 86-116 9-39 (92)
39 cd00158 RHOD Rhodanese Homolog 98.3 3.9E-07 8.5E-12 59.1 2.2 38 81-118 3-41 (89)
40 PLN02723 3-mercaptopyruvate su 98.3 4.8E-07 1E-11 74.2 2.6 55 75-129 192-258 (320)
41 TIGR02981 phageshock_pspE phag 98.3 3.5E-07 7.5E-12 63.7 1.4 31 87-117 18-48 (101)
42 PRK11493 sseA 3-mercaptopyruva 98.2 1E-06 2.2E-11 70.7 3.9 44 74-117 6-60 (281)
43 cd01445 TST_Repeats Thiosulfat 98.2 9.5E-07 2.1E-11 64.4 3.3 43 75-117 1-68 (138)
44 PRK10287 thiosulfate:cyanide s 98.2 4.3E-07 9.4E-12 63.6 1.3 31 87-117 20-50 (104)
45 TIGR03865 PQQ_CXXCW PQQ-depend 98.2 2.8E-06 6.1E-11 63.6 5.4 42 71-112 34-89 (162)
46 COG0607 PspE Rhodanese-related 98.2 2.2E-06 4.9E-11 58.1 4.4 34 86-119 19-53 (110)
47 PRK05597 molybdopterin biosynt 98.1 2E-06 4.4E-11 71.6 3.3 45 72-117 260-304 (355)
48 cd01535 4RHOD_Repeat_4 Member 98.1 1.3E-06 2.8E-11 64.2 1.7 38 80-117 2-41 (145)
49 PRK09629 bifunctional thiosulf 98.1 3.1E-06 6.7E-11 75.3 4.3 43 73-115 9-52 (610)
50 COG2897 SseA Rhodanese-related 98.0 4E-06 8.7E-11 68.5 3.2 44 74-117 157-211 (285)
51 PRK09629 bifunctional thiosulf 97.9 8.5E-06 1.8E-10 72.5 3.4 44 74-117 148-200 (610)
52 PLN02723 3-mercaptopyruvate su 97.9 1.1E-05 2.3E-10 66.3 3.7 46 73-118 22-77 (320)
53 PRK11493 sseA 3-mercaptopyruva 97.8 1.1E-05 2.4E-10 64.7 2.6 43 75-117 155-209 (281)
54 KOG3772 M-phase inducer phosph 97.8 1.9E-05 4.1E-10 65.5 3.5 46 71-116 154-206 (325)
55 PRK01269 tRNA s(4)U8 sulfurtra 97.6 3.4E-05 7.5E-10 66.7 2.3 38 80-117 400-441 (482)
56 COG1054 Predicted sulfurtransf 96.9 0.00039 8.4E-09 57.3 1.3 46 72-117 112-158 (308)
57 COG2897 SseA Rhodanese-related 96.3 0.0038 8.3E-08 51.1 3.3 58 73-130 11-80 (285)
58 COG2603 Predicted ATPase [Gene 96.2 0.0018 3.9E-08 53.6 1.1 50 77-126 5-54 (334)
59 PRK07688 thiamine/molybdopteri 94.8 0.047 1E-06 45.4 4.7 51 56-107 260-317 (339)
60 KOG1529 Mercaptopyruvate sulfu 93.6 0.034 7.3E-07 45.7 1.4 42 87-128 172-224 (286)
61 COG5105 MIH1 Mitotic inducer, 93.6 0.043 9.2E-07 46.3 2.0 41 71-111 240-287 (427)
62 PRK00142 putative rhodanese-re 91.9 0.032 7E-07 46.0 -0.9 40 76-115 17-56 (314)
63 KOG1093 Predicted protein kina 78.5 0.53 1.2E-05 42.5 -0.6 41 71-113 620-660 (725)
64 KOG1717 Dual specificity phosp 63.4 1.6 3.5E-05 36.2 -0.9 45 74-122 5-50 (343)
65 PF13350 Y_phosphatase3: Tyros 56.3 25 0.00053 25.6 4.4 44 70-113 25-74 (164)
66 KOG3636 Uncharacterized conser 48.3 8.6 0.00019 34.2 1.0 24 88-111 327-350 (669)
67 KOG1529 Mercaptopyruvate sulfu 47.9 25 0.00053 29.1 3.5 45 74-118 6-60 (286)
68 TIGR03167 tRNA_sel_U_synt tRNA 44.7 34 0.00073 28.3 3.9 34 72-105 135-172 (311)
69 PF04273 DUF442: Putative phos 41.3 29 0.00063 24.3 2.7 26 73-98 13-39 (110)
70 TIGR01244 conserved hypothetic 41.1 30 0.00065 24.7 2.8 27 73-99 13-40 (135)
71 PF04343 DUF488: Protein of un 30.6 47 0.001 23.1 2.3 21 77-97 2-25 (122)
72 COG1891 Uncharacterized protei 24.1 68 0.0015 25.3 2.3 27 74-100 7-33 (235)
No 1
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.08 E-value=2e-10 Score=96.60 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=64.0
Q ss_pred eeecccCCCcccccccccccccchhhhccccCcc-cccCCCCccCHHHHHHHHhCC--CEEEeeCChhhhhcCCCCCcee
Q 032868 33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNL-EAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAIN 109 (131)
Q Consensus 33 ~l~l~~~P~r~~i~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~Is~~el~~l~~~~--~~LIDVRep~E~~~ghIpgAi~ 109 (131)
.++++++|+|+.+.. +.+|+.+|+..... ........|+++++.++++++ .++||||+++||+.+|||||+|
T Consensus 251 ~~~~~~~~~C~~~~~-----~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAin 325 (392)
T PRK07878 251 TIKIRKDPSTPKITE-----LIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQL 325 (392)
T ss_pred eEeeccCCCCCcccc-----cccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEE
Confidence 478889999987766 56789999875322 122345689999999998653 6899999999999999999999
Q ss_pred eCCCCCCC
Q 032868 110 VPYMDDKE 117 (131)
Q Consensus 110 IPl~~i~~ 117 (131)
+|+..+..
T Consensus 326 ip~~~l~~ 333 (392)
T PRK07878 326 IPKSEILS 333 (392)
T ss_pred cChHHhcc
Confidence 99987754
No 2
>PRK07411 hypothetical protein; Validated
Probab=99.06 E-value=2.2e-10 Score=96.35 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=64.3
Q ss_pred eeecccCCCcccccccccccccchhhhccccCcc----cccCCCCccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCC
Q 032868 33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNL----EAVGVPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHAT 105 (131)
Q Consensus 33 ~l~l~~~P~r~~i~~~~~~~~~~~~~~c~~~~~~----~~~~~~~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIp 105 (131)
.++++++|.|+.+.. +..|..+|+..... ........|+++++.++++. +.++||||+++||+.||||
T Consensus 243 ~~~~~~~~~c~~i~~-----~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIp 317 (390)
T PRK07411 243 ELKLRPNPERPVIEK-----LIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIP 317 (390)
T ss_pred EEeccCCCCCCcccc-----ccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCC
Confidence 568889999887766 56799999875322 12345678999999999864 3689999999999999999
Q ss_pred CceeeCCCCCCC
Q 032868 106 GAINVPYMDDKE 117 (131)
Q Consensus 106 gAi~IPl~~i~~ 117 (131)
||+|||+.++..
T Consensus 318 GAiniP~~~l~~ 329 (390)
T PRK07411 318 GSVLVPLPDIEN 329 (390)
T ss_pred CCEEccHHHhhc
Confidence 999999987754
No 3
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.03 E-value=2.4e-10 Score=83.63 Aligned_cols=58 Identities=41% Similarity=0.576 Sum_probs=49.0
Q ss_pred CCCccCHHHHHHHHhCC-CEEEeeCChhhhhcCCCCCceeeCCCCCCCCcccCCCchhhcc
Q 032868 71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSIDSFSK 130 (131)
Q Consensus 71 ~~~~Is~~el~~l~~~~-~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~~~~~~~~f~~ 130 (131)
.+..++.++++.+++.+ .++||||+|+||..||+|.++|||++......+ ....||.+
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~--l~~~eF~k 79 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGA--LKNPEFLK 79 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccc--cCCHHHHH
Confidence 45679999999999776 999999999999999999999999986554444 66778865
No 4
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.02 E-value=3.8e-10 Score=80.72 Aligned_cols=42 Identities=40% Similarity=0.683 Sum_probs=38.0
Q ss_pred cCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDK 116 (131)
Q Consensus 75 Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~ 116 (131)
|++++++++++++.+|||||+++||..||||||+|||+..+.
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~ 42 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDE 42 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChh
Confidence 688999999887789999999999999999999999997654
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.01 E-value=2.1e-10 Score=78.25 Aligned_cols=44 Identities=32% Similarity=0.347 Sum_probs=39.0
Q ss_pred ccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 74 SVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 74 ~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
.|+++++.+++++ +.++||||++.||+.||||||+|||++.+.+
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~ 47 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFRE 47 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhH
Confidence 5889999998865 4789999999999999999999999987653
No 6
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=98.99 E-value=2.6e-10 Score=77.18 Aligned_cols=43 Identities=30% Similarity=0.372 Sum_probs=36.8
Q ss_pred cCHHHHHHHHhCC---CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 75 Is~~el~~l~~~~---~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
|+++++.+++..+ +++||||+++||+.||||||+|+|+..+..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~ 46 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQ 46 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHH
Confidence 5788999988643 679999999999999999999999876543
No 7
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=98.99 E-value=5e-10 Score=76.16 Aligned_cols=43 Identities=26% Similarity=0.245 Sum_probs=37.7
Q ss_pred cCHHHHHHHHhC--CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 75 VPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 75 Is~~el~~l~~~--~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
|+++++.+++++ +.+|||||+++||+.||||||+|+|+..+..
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~ 45 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYF 45 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchH
Confidence 578899998865 3789999999999999999999999987643
No 8
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=98.97 E-value=8e-10 Score=74.90 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=41.2
Q ss_pred CccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP 118 (131)
Q Consensus 73 ~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~ 118 (131)
..|+++++.++++.+..|||||+++||..+|||||+|+|+..+...
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~ 47 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLSQLESE 47 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChhHhccc
Confidence 4689999999987778999999999999999999999999887653
No 9
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=98.96 E-value=5.6e-10 Score=77.27 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=41.0
Q ss_pred CCCCccCHHHHHHHHhCC--CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 70 GVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 70 ~~~~~Is~~el~~l~~~~--~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
...+.++++++.++++.+ .+|||||++.||..||||||+|||++++..
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~ 56 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVL 56 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHH
Confidence 345679999999998643 689999999999999999999999977643
No 10
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=98.90 E-value=1.1e-09 Score=74.61 Aligned_cols=42 Identities=29% Similarity=0.507 Sum_probs=37.0
Q ss_pred cCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDK 116 (131)
Q Consensus 75 Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~ 116 (131)
|++++++++++. +++|||||++.||..||||||+|+|+..+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~ 45 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVF 45 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhc
Confidence 578999999864 378999999999999999999999987654
No 11
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=98.87 E-value=1.7e-09 Score=73.78 Aligned_cols=42 Identities=31% Similarity=0.520 Sum_probs=36.5
Q ss_pred CHHHHHHHHh-C-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 76 s~~el~~l~~-~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
+++++.++++ + +.+|||||++.||..||||||+|+|+..+.+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~ 45 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPD 45 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhh
Confidence 5778888886 4 4899999999999999999999999987654
No 12
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=98.84 E-value=2.3e-09 Score=74.82 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=38.3
Q ss_pred CccCHHHHHHHHhCC-------CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 73 TSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 73 ~~Is~~el~~l~~~~-------~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
..|++++++++++++ .++||||++ ||..||||||+|+|+..+.+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~ 52 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQ 52 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHH
Confidence 458999999998653 689999999 99999999999999977653
No 13
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=98.83 E-value=2.8e-09 Score=75.47 Aligned_cols=46 Identities=33% Similarity=0.396 Sum_probs=40.3
Q ss_pred CCccCHHHHHHHHhC--CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 72 PTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 72 ~~~Is~~el~~l~~~--~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
...|+++++.++++. +.++||||+++||+.||||||+|||+..+.+
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~ 54 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLS 54 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhh
Confidence 457899999999865 4789999999999999999999999987654
No 14
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=98.83 E-value=2.2e-09 Score=71.85 Aligned_cols=42 Identities=38% Similarity=0.609 Sum_probs=37.3
Q ss_pred cCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDK 116 (131)
Q Consensus 75 Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~ 116 (131)
++++++.+++.++.++||||++++|..||||||+|+|+.++.
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~ 42 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLDELR 42 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHHHHH
Confidence 478899999877789999999999999999999999986654
No 15
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=98.80 E-value=4.2e-09 Score=72.74 Aligned_cols=46 Identities=33% Similarity=0.494 Sum_probs=39.8
Q ss_pred CCCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868 71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDK 116 (131)
Q Consensus 71 ~~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~ 116 (131)
..+.++++++.+++++ +.++||||++.||+.||||||+|+|++.+.
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~ 49 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLG 49 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHH
Confidence 3467999999999854 578999999999999999999999986654
No 16
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=98.80 E-value=4.1e-09 Score=73.25 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=39.0
Q ss_pred CccCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868 73 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDDK 116 (131)
Q Consensus 73 ~~Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i~ 116 (131)
..++++++.+++.+ +.++||||++.||..||||||+|+|+..+.
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~ 54 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREIC 54 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhh
Confidence 46899999999864 378999999999999999999999998765
No 17
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=98.80 E-value=6.4e-09 Score=74.14 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=38.4
Q ss_pred CccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCC-CCCC
Q 032868 73 TSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYM-DDKE 117 (131)
Q Consensus 73 ~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~-~i~~ 117 (131)
..|+++++.+++++ ++++||||+++||+.||||||+|||+. .+.+
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~ 54 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEE 54 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHH
Confidence 46899999999854 478999999999999999999999986 3443
No 18
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=98.76 E-value=8.7e-09 Score=72.68 Aligned_cols=43 Identities=30% Similarity=0.373 Sum_probs=37.9
Q ss_pred cCHHHHHHHHhC--CCEEEeeCChhhhh-cCCCCCceeeCCCCCCC
Q 032868 75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMDDKE 117 (131)
Q Consensus 75 Is~~el~~l~~~--~~~LIDVRep~E~~-~ghIpgAi~IPl~~i~~ 117 (131)
|+++++.+++++ +.++||||++.||+ .||||||+|+|+.++..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~ 46 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPD 46 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccc
Confidence 578899999865 48899999999999 99999999999987653
No 19
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=98.75 E-value=6.5e-09 Score=70.86 Aligned_cols=44 Identities=27% Similarity=0.411 Sum_probs=37.8
Q ss_pred ccCHHHHHHHHhCC---CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 74 ~Is~~el~~l~~~~---~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
.|+++++.+++..+ .++||||+++||..+|||||+|+|+..+.+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~ 47 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPE 47 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHH
Confidence 37889999998643 789999999999999999999999866543
No 20
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=98.74 E-value=9.4e-09 Score=86.18 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=52.8
Q ss_pred eeeecccCCCcccccccccccccchhhhccccCcccccCCCCccCHHHHHHHHhCC-CEEEeeCChhhhhcCCCC---Cc
Q 032868 32 GLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GA 107 (131)
Q Consensus 32 ~~l~l~~~P~r~~i~~~~~~~~~~~~~~c~~~~~~~~~~~~~~Is~~el~~l~~~~-~~LIDVRep~E~~~ghIp---gA 107 (131)
..+++.++|.|+.+..+ .++|.. ..++++++.++++++ .++||||+++||+.|||| ||
T Consensus 248 ~~~~~~~~~~c~~~~~~----~~~~~~--------------~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gA 309 (370)
T PRK05600 248 RSFRVGADPARPLVTRL----RPSYEA--------------ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGAS 309 (370)
T ss_pred EEEEecCCCCCCccccc----cCcchh--------------cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCcc
Confidence 45677888887766553 123331 268999999998654 789999999999999998 59
Q ss_pred eeeCCCCCCC
Q 032868 108 INVPYMDDKE 117 (131)
Q Consensus 108 i~IPl~~i~~ 117 (131)
+|||++.+.+
T Consensus 310 inIPl~~l~~ 319 (370)
T PRK05600 310 LKLPLSAITD 319 (370)
T ss_pred EeCcHHHhhc
Confidence 9999988864
No 21
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.73 E-value=8.9e-09 Score=86.19 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=56.6
Q ss_pred ccchhhhccccCccc----ccCCCCccCHHHHHHHHhCC--CEEEeeCChhhhhcCCCCCceeeCCCCCCCCcc
Q 032868 53 ILSFCPKASLRGNLE----AVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMDDKEPEI 120 (131)
Q Consensus 53 ~~~~~~~c~~~~~~~----~~~~~~~Is~~el~~l~~~~--~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~ 120 (131)
.++|+.||+...... .-.....|++.|++++++++ .++||||++.||++.|+|+|+|||+.+++++..
T Consensus 293 ~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~ 366 (427)
T KOG2017|consen 293 LIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG 366 (427)
T ss_pred ccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh
Confidence 789999999875442 11235689999999999763 899999999999999999999999998887643
No 22
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=98.71 E-value=8.2e-09 Score=69.99 Aligned_cols=40 Identities=35% Similarity=0.659 Sum_probs=35.1
Q ss_pred CHHHHHHHHh-CCCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868 76 PVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMDD 115 (131)
Q Consensus 76 s~~el~~l~~-~~~~LIDVRep~E~~~ghIpgAi~IPl~~i 115 (131)
|++|+++++. .+++|||||++.+|..||||||+|+|...+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~ 41 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSL 41 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGG
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccc
Confidence 5789999983 459999999999999999999999999665
No 23
>PLN02160 thiosulfate sulfurtransferase
Probab=98.71 E-value=1.8e-08 Score=73.33 Aligned_cols=44 Identities=55% Similarity=0.884 Sum_probs=38.8
Q ss_pred CCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCc--eeeCCCCC
Q 032868 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMDD 115 (131)
Q Consensus 72 ~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgA--i~IPl~~i 115 (131)
+..++++++.++++++..|||||+++||..|||||| +|||+..+
T Consensus 14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~ 59 (136)
T PLN02160 14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLN 59 (136)
T ss_pred eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhc
Confidence 467999999999977778999999999999999999 89997443
No 24
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=98.69 E-value=1.1e-08 Score=71.30 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=37.9
Q ss_pred CccCHHHHHHHHhCC---CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 73 ~~Is~~el~~l~~~~---~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
+.|+++++.+++..+ .++||||++ ||..||||||+|+|+..+..
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~ 48 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKA 48 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhh
Confidence 458999999998653 689999999 99999999999999987653
No 25
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=98.69 E-value=1.2e-08 Score=70.91 Aligned_cols=43 Identities=30% Similarity=0.572 Sum_probs=36.9
Q ss_pred cCHHHHHHHHhC-CCEEEeeCChhhhhc-----------CCCCCceeeCCCCCCC
Q 032868 75 VPVRVAHELLQA-GHRYLDVRTPEEFSA-----------GHATGAINVPYMDDKE 117 (131)
Q Consensus 75 Is~~el~~l~~~-~~~LIDVRep~E~~~-----------ghIpgAi~IPl~~i~~ 117 (131)
++++++.+++++ +.+|||||++.||.. ||||||+|+|++.+..
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~ 55 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLD 55 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcC
Confidence 478889888865 489999999999987 9999999999977654
No 26
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=98.69 E-value=1.9e-08 Score=70.47 Aligned_cols=43 Identities=30% Similarity=0.354 Sum_probs=38.1
Q ss_pred cCHHHHHHHHhC-CCEEEeeCCh-------hhhhcCCCCCceeeCCCCCCC
Q 032868 75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 75 Is~~el~~l~~~-~~~LIDVRep-------~E~~~ghIpgAi~IPl~~i~~ 117 (131)
++++++.+++.. +.+|||||++ +||..||||||+|+|+..+..
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~ 52 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLD 52 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccc
Confidence 688999999865 5789999999 999999999999999977754
No 27
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=98.69 E-value=2.3e-08 Score=67.51 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=35.9
Q ss_pred cCHHHHHHHHhC-CCEEEeeCChhhh-hcCCCCCceeeCCCCCC
Q 032868 75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMDDK 116 (131)
Q Consensus 75 Is~~el~~l~~~-~~~LIDVRep~E~-~~ghIpgAi~IPl~~i~ 116 (131)
|+++++.+++++ +.++||||++.|| ..||||||+|+|+..+.
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~ 44 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLE 44 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhh
Confidence 578899988864 5889999999998 57999999999987654
No 28
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=98.68 E-value=1.8e-08 Score=84.00 Aligned_cols=50 Identities=34% Similarity=0.580 Sum_probs=41.5
Q ss_pred CHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCCcccCCCc
Q 032868 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSI 125 (131)
Q Consensus 76 s~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~~~~~~ 125 (131)
...++.+++.++..|||||+|.||..||||||+|+|+.+..++...|+.+
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Y 53 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCY 53 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhh
Confidence 46778888777789999999999999999999999998776666555443
No 29
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=98.62 E-value=2.9e-08 Score=66.38 Aligned_cols=42 Identities=36% Similarity=0.470 Sum_probs=37.0
Q ss_pred cCHHHHHHHHhC--CCEEEeeCChhhhhc--CCCCCceeeCCCCCC
Q 032868 75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMDDK 116 (131)
Q Consensus 75 Is~~el~~l~~~--~~~LIDVRep~E~~~--ghIpgAi~IPl~~i~ 116 (131)
|+++++.+++++ +.++||||++.||.. ||||||+|+|+..+.
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~ 47 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLD 47 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHH
Confidence 678899998865 389999999999999 999999999997664
No 30
>PRK05320 rhodanese superfamily protein; Provisional
Probab=98.58 E-value=4.7e-08 Score=78.39 Aligned_cols=48 Identities=25% Similarity=0.238 Sum_probs=41.0
Q ss_pred CCCCccCHHHHHHHHhC-------CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 70 ~~~~~Is~~el~~l~~~-------~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
+....++++++.++++. +.+|||||++.||+.||||||+|||++++.+
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~ 161 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE 161 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh
Confidence 34578999999998854 2689999999999999999999999987643
No 31
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=98.52 E-value=5.5e-08 Score=80.03 Aligned_cols=39 Identities=41% Similarity=0.750 Sum_probs=34.3
Q ss_pred CEEEeeCChhhhhcCCCCCceeeCCCCCCCCcccCCCch
Q 032868 88 HRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSID 126 (131)
Q Consensus 88 ~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~~~~~~~ 126 (131)
..|||||+|.||..||||||+|||+.+.+++...|+.++
T Consensus 3 ~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~yk 41 (311)
T TIGR03167 3 DPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYK 41 (311)
T ss_pred CEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhh
Confidence 579999999999999999999999988777777776654
No 32
>PRK01415 hypothetical protein; Validated
Probab=98.51 E-value=9.6e-08 Score=76.49 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=40.9
Q ss_pred CCCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 71 ~~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
....|+++++.+++++ +.++||||++.||+.|||+||+|+|+..+.+
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e 157 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQ 157 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhh
Confidence 3467999999999975 5899999999999999999999999876643
No 33
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=98.45 E-value=9.2e-08 Score=64.57 Aligned_cols=30 Identities=37% Similarity=0.597 Sum_probs=27.1
Q ss_pred CCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868 87 GHRYLDVRTPEEFSAGHATGAINVPYMDDK 116 (131)
Q Consensus 87 ~~~LIDVRep~E~~~ghIpgAi~IPl~~i~ 116 (131)
+.++||||++.||+.||||||+|+|+.++.
T Consensus 12 ~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~ 41 (96)
T cd01529 12 GTALLDVRAEDEYAAGHLPGKRSIPGAALV 41 (96)
T ss_pred CeEEEeCCCHHHHcCCCCCCcEeCCHHHhc
Confidence 489999999999999999999999986554
No 34
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=98.45 E-value=1.9e-07 Score=66.63 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=36.8
Q ss_pred cCHHHHHHHHhC---CCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMDD 115 (131)
Q Consensus 75 Is~~el~~l~~~---~~~LIDVRep~E~~~ghIpgAi~IPl~~i 115 (131)
|+++++.++++. +.++||||.+.+|..||||||+|+|+..+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~ 45 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTI 45 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHH
Confidence 789999999863 48999999999999999999999998754
No 35
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=98.42 E-value=2.1e-07 Score=76.63 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=41.3
Q ss_pred CCCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 71 ~~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
....++++++.+++++ +.+|||||++.||+.||||||+|+|+..+.+
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~ 157 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFRE 157 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhh
Confidence 4467999999998865 4899999999999999999999999987753
No 36
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=98.41 E-value=1.8e-07 Score=78.14 Aligned_cols=46 Identities=24% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 72 ~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
+..|+++++.++++++.++||||+++||..||||||+|+|+..+..
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~ 47 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRGFLEL 47 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHHHHHH
Confidence 3568999999999877899999999999999999999999876543
No 37
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=98.39 E-value=1.5e-07 Score=61.66 Aligned_cols=33 Identities=39% Similarity=0.700 Sum_probs=29.3
Q ss_pred CCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868 86 AGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP 118 (131)
Q Consensus 86 ~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~ 118 (131)
.+.+|||||++.||..+|||||+|+|+..+...
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~ 35 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDR 35 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccC
Confidence 357899999999999999999999999877654
No 38
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=98.37 E-value=1.4e-07 Score=63.65 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCCEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868 86 AGHRYLDVRTPEEFSAGHATGAINVPYMDDK 116 (131)
Q Consensus 86 ~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~ 116 (131)
++.+|||||++.||..+|||||+|+|+..+.
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~ 39 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLSRLE 39 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHHHHH
Confidence 4589999999999999999999999987653
No 39
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=98.29 E-value=3.9e-07 Score=59.14 Aligned_cols=38 Identities=50% Similarity=0.799 Sum_probs=31.1
Q ss_pred HHHH-hCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCC
Q 032868 81 HELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEP 118 (131)
Q Consensus 81 ~~l~-~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~ 118 (131)
.+++ +.+..+||||++.||+.+|||||+|+|...+...
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~ 41 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEER 41 (89)
T ss_pred HHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhH
Confidence 3444 3458999999999999999999999999776543
No 40
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=98.26 E-value=4.8e-07 Score=74.20 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=42.7
Q ss_pred cCHHHHHHHHhC-CCEEEeeCChhhh-----------hcCCCCCceeeCCCCCCCCcccCCCchhhc
Q 032868 75 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMDDKEPEICGGSIDSFS 129 (131)
Q Consensus 75 Is~~el~~l~~~-~~~LIDVRep~E~-----------~~ghIpgAi~IPl~~i~~~~~~~~~~~~f~ 129 (131)
++.+++.+.+++ +..|||+|++.|| ..||||||+|+|+..+.+.+..-++.++|+
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~ 258 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELK 258 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHH
Confidence 678888888754 4789999999998 469999999999977665543346666665
No 41
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=98.25 E-value=3.5e-07 Score=63.71 Aligned_cols=31 Identities=42% Similarity=0.804 Sum_probs=27.9
Q ss_pred CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 87 GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 87 ~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
...+||||+++||..||||||+|||+.++.+
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgAinip~~~l~~ 48 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGAINIPLKEIKE 48 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCCEECCHHHHHH
Confidence 4689999999999999999999999977654
No 42
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=98.23 E-value=1e-06 Score=70.69 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=37.9
Q ss_pred ccCHHHHHHHHhC-CCEEEeeCC----------hhhhhcCCCCCceeeCCCCCCC
Q 032868 74 SVPVRVAHELLQA-GHRYLDVRT----------PEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 74 ~Is~~el~~l~~~-~~~LIDVRe----------p~E~~~ghIpgAi~IPl~~i~~ 117 (131)
-++++++.+.+++ +++|||||. +.+|..||||||+|+|+..+..
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~ 60 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSD 60 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcC
Confidence 4899999999865 489999996 7899999999999999876544
No 43
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=98.23 E-value=9.5e-07 Score=64.43 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=35.7
Q ss_pred cCHHHHHHHHh-----CCCEEEeeCCh--------hhhhc------------CCCCCceeeCCCCCCC
Q 032868 75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMDDKE 117 (131)
Q Consensus 75 Is~~el~~l~~-----~~~~LIDVRep--------~E~~~------------ghIpgAi~IPl~~i~~ 117 (131)
|+++++.+.++ .++.|||+|.. .+|.. ||||||+|+|+..+..
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~ 68 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLD 68 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhC
Confidence 57888988886 24899999987 89987 9999999999866543
No 44
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=98.22 E-value=4.3e-07 Score=63.64 Aligned_cols=31 Identities=42% Similarity=0.830 Sum_probs=27.4
Q ss_pred CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 87 GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 87 ~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
.-.+||||+++||+.+|||||+|+|+.++.+
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~ 50 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKE 50 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHHH
Confidence 3579999999999999999999999876643
No 45
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=98.20 E-value=2.8e-06 Score=63.60 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=34.5
Q ss_pred CCCccCHHHHHHHHhC-CCEEEeeCChh----hhhcC---------CCCCceeeCC
Q 032868 71 VPTSVPVRVAHELLQA-GHRYLDVRTPE----EFSAG---------HATGAINVPY 112 (131)
Q Consensus 71 ~~~~Is~~el~~l~~~-~~~LIDVRep~----E~~~g---------hIpgAi~IPl 112 (131)
....|+++++.+++++ +.+|||||++. ||..| |||||+|+|.
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~ 89 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPN 89 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecc
Confidence 4568999999999965 48899999976 45444 9999999995
No 46
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.20 E-value=2.2e-06 Score=58.10 Aligned_cols=34 Identities=47% Similarity=0.758 Sum_probs=30.9
Q ss_pred CCCEEEeeCChhhhhcCCCCC-ceeeCCCCCCCCc
Q 032868 86 AGHRYLDVRTPEEFSAGHATG-AINVPYMDDKEPE 119 (131)
Q Consensus 86 ~~~~LIDVRep~E~~~ghIpg-Ai~IPl~~i~~~~ 119 (131)
++.++||||++.||+.+|||| ++|||++++.+..
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~ 53 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLSELKAAE 53 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeecccchhhh
Confidence 358999999999999999999 9999999988763
No 47
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=98.11 E-value=2e-06 Score=71.61 Aligned_cols=45 Identities=36% Similarity=0.442 Sum_probs=38.2
Q ss_pred CCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 72 ~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
...++++++.++. ++.++||||+++||+.+|||||+|+|+..+..
T Consensus 260 ~~~i~~~~~~~~~-~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~ 304 (355)
T PRK05597 260 GEVLDVPRVSALP-DGVTLIDVREPSEFAAYSIPGAHNVPLSAIRE 304 (355)
T ss_pred ccccCHHHHHhcc-CCCEEEECCCHHHHccCcCCCCEEeCHHHhhh
Confidence 3578889988654 45789999999999999999999999977654
No 48
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=98.10 E-value=1.3e-06 Score=64.24 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=31.1
Q ss_pred HHHHHhCC--CEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 80 AHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 80 l~~l~~~~--~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
+.++++++ .+|||||++.+|..||||||+|+|...+..
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~ 41 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQ 41 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHH
Confidence 45566443 799999999999999999999999876543
No 49
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=98.09 E-value=3.1e-06 Score=75.25 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=38.0
Q ss_pred CccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868 73 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDD 115 (131)
Q Consensus 73 ~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i 115 (131)
..|++++|++++++ +.+|||||++.||..||||||+|++++.+
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~ 52 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRT 52 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHh
Confidence 35899999999965 48999999999999999999999997643
No 50
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.01 E-value=4e-06 Score=68.47 Aligned_cols=44 Identities=34% Similarity=0.634 Sum_probs=36.5
Q ss_pred ccCHHHHHHHHhC-CCEEEeeCChhhhhc----------CCCCCceeeCCCCCCC
Q 032868 74 SVPVRVAHELLQA-GHRYLDVRTPEEFSA----------GHATGAINVPYMDDKE 117 (131)
Q Consensus 74 ~Is~~el~~l~~~-~~~LIDVRep~E~~~----------ghIpgAi~IPl~~i~~ 117 (131)
.++..++....+. +.+|||+|.+.||.- ||||||+|||...+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~ 211 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVD 211 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhc
Confidence 4566667776654 478999999999987 9999999999988777
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=97.90 E-value=8.5e-06 Score=72.48 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHhC-CCEEEeeCChhhhh--------cCCCCCceeeCCCCCCC
Q 032868 74 SVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMDDKE 117 (131)
Q Consensus 74 ~Is~~el~~l~~~-~~~LIDVRep~E~~--------~ghIpgAi~IPl~~i~~ 117 (131)
.++.+++.+.+++ +..|||+|+++||. .||||||+|+|+..+.+
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~ 200 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMD 200 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcC
Confidence 4678888888854 47899999999994 79999999999865443
No 52
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=97.89 E-value=1.1e-05 Score=66.29 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=38.3
Q ss_pred CccCHHHHHHHHhC-CCEEEeeC--------C-hhhhhcCCCCCceeeCCCCCCCC
Q 032868 73 TSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMDDKEP 118 (131)
Q Consensus 73 ~~Is~~el~~l~~~-~~~LIDVR--------e-p~E~~~ghIpgAi~IPl~~i~~~ 118 (131)
..|++++|.+++++ +.+||||| + ..+|..||||||+|++++.+.+.
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~ 77 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDR 77 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCC
Confidence 46999999999965 58899995 4 37899999999999998766554
No 53
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=97.82 E-value=1.1e-05 Score=64.74 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=33.2
Q ss_pred cCHHHHHHHHhC-CCEEEeeCChhhhh-----------cCCCCCceeeCCCCCCC
Q 032868 75 VPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGHATGAINVPYMDDKE 117 (131)
Q Consensus 75 Is~~el~~l~~~-~~~LIDVRep~E~~-----------~ghIpgAi~IPl~~i~~ 117 (131)
.+.+++...+++ +..|||+|++.||. .||||||+|+|+..+.+
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~ 209 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVR 209 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcC
Confidence 345555555544 47899999999995 69999999999877654
No 54
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=1.9e-05 Score=65.53 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=39.5
Q ss_pred CCCccCHHHHHHHHhCC-------CEEEeeCChhhhhcCCCCCceeeCCCCCC
Q 032868 71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMDDK 116 (131)
Q Consensus 71 ~~~~Is~~el~~l~~~~-------~~LIDVRep~E~~~ghIpgAi~IPl~~i~ 116 (131)
.++.|+++.|+.|+.+. +++||+|-|.||.-|||+||+||+-.+..
T Consensus 154 ~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~ 206 (325)
T KOG3772|consen 154 DLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELL 206 (325)
T ss_pred cccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhh
Confidence 56789999999999652 56999999999999999999999865443
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.58 E-value=3.4e-05 Score=66.66 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=31.5
Q ss_pred HHHHHhCCCEEEeeCChhhhhcCCCCC----ceeeCCCCCCC
Q 032868 80 AHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMDDKE 117 (131)
Q Consensus 80 l~~l~~~~~~LIDVRep~E~~~ghIpg----Ai~IPl~~i~~ 117 (131)
+.+.+..+.++||||+++||+.+|||| |+|+|+.++.+
T Consensus 400 ~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~ 441 (482)
T PRK01269 400 TVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLST 441 (482)
T ss_pred HHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHH
Confidence 333344568999999999999999999 99999977754
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=96.90 E-value=0.00039 Score=57.33 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=40.0
Q ss_pred CCccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCC
Q 032868 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKE 117 (131)
Q Consensus 72 ~~~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~ 117 (131)
-.-|+++++++++.+ +.++||+|+.-||++||+.||++.+...+++
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFre 158 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFRE 158 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhh
Confidence 456899999999965 6999999999999999999999988776654
No 57
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.0038 Score=51.11 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=41.9
Q ss_pred CccCHHHHHHHHhC------CCEEEeeCCh--hhhhcCCCCCceeeCCCCCCCCcc--cC--CCchhhcc
Q 032868 73 TSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMDDKEPEI--CG--GSIDSFSK 130 (131)
Q Consensus 73 ~~Is~~el~~l~~~------~~~LIDVRep--~E~~~ghIpgAi~IPl~~i~~~~~--~~--~~~~~f~~ 130 (131)
.-|+++.|.+.+.+ +..+++++.. .+|..+|||||+++.++.+.+... .+ -++++|.+
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~ 80 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAK 80 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHH
Confidence 46899999998753 4556666665 899999999999999987766543 23 44456653
No 58
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.23 E-value=0.0018 Score=53.58 Aligned_cols=50 Identities=36% Similarity=0.484 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCCCCCcccCCCch
Q 032868 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICGGSID 126 (131)
Q Consensus 77 ~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~~~~~~~ 126 (131)
.++...+..++..|||||.|-||..|+.|+++|+|+.+-.++...|++++
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yK 54 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYK 54 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHh
Confidence 44566666677899999999999999999999999988777666665544
No 59
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.84 E-value=0.047 Score=45.43 Aligned_cols=51 Identities=10% Similarity=-0.120 Sum_probs=36.8
Q ss_pred hhhhccccCcccccCCCCccCHHHHHHHHh-------CCCEEEeeCChhhhhcCCCCCc
Q 032868 56 FCPKASLRGNLEAVGVPTSVPVRVAHELLQ-------AGHRYLDVRTPEEFSAGHATGA 107 (131)
Q Consensus 56 ~~~~c~~~~~~~~~~~~~~Is~~el~~l~~-------~~~~LIDVRep~E~~~ghIpgA 107 (131)
+..+|+........+....++++++.+++. .+.++||||+++ |+..++|+-
T Consensus 260 ~~~lcg~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 260 TAVLCGRNTVQIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred hhhhcCccccccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 447898643222223446899999988872 247899999999 999999853
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=93.63 E-value=0.034 Score=45.66 Aligned_cols=42 Identities=31% Similarity=0.593 Sum_probs=34.0
Q ss_pred CCEEEeeCChhhhh-----------cCCCCCceeeCCCCCCCCcccCCCchhh
Q 032868 87 GHRYLDVRTPEEFS-----------AGHATGAINVPYMDDKEPEICGGSIDSF 128 (131)
Q Consensus 87 ~~~LIDVRep~E~~-----------~ghIpgAi~IPl~~i~~~~~~~~~~~~f 128 (131)
++..||.|...+|. -||||||+|+|+..+...+-.-+++++-
T Consensus 172 ~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl 224 (286)
T KOG1529|consen 172 NFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDL 224 (286)
T ss_pred cceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHH
Confidence 48999999999883 4999999999999887776666655543
No 61
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=93.62 E-value=0.043 Score=46.28 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=36.4
Q ss_pred CCCccCHHHHHHHHhCC-------CEEEeeCChhhhhcCCCCCceeeC
Q 032868 71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVP 111 (131)
Q Consensus 71 ~~~~Is~~el~~l~~~~-------~~LIDVRep~E~~~ghIpgAi~IP 111 (131)
.++.|+++.++.++++. ..+||.|=+-||.-|||-+|+||-
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~ 287 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNIS 287 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecc
Confidence 46799999999999763 469999999999999999999985
No 62
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=91.91 E-value=0.032 Score=46.02 Aligned_cols=40 Identities=8% Similarity=-0.029 Sum_probs=33.8
Q ss_pred CHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCCCC
Q 032868 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMDD 115 (131)
Q Consensus 76 s~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~~i 115 (131)
+++++.+.+.....++|||....|+.+||+|++|+|.+.+
T Consensus 17 ~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~~~ 56 (314)
T PRK00142 17 DPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIEQT 56 (314)
T ss_pred CHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHHHH
Confidence 4677887776667799999999999999999999997543
No 63
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=78.50 E-value=0.53 Score=42.48 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=35.3
Q ss_pred CCCccCHHHHHHHHhCCCEEEeeCChhhhhcCCCCCceeeCCC
Q 032868 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113 (131)
Q Consensus 71 ~~~~Is~~el~~l~~~~~~LIDVRep~E~~~ghIpgAi~IPl~ 113 (131)
..+.|+.+++..+ ....++|.|...||..+|+++++|+|+.
T Consensus 620 ~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~ 660 (725)
T KOG1093|consen 620 HCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN 660 (725)
T ss_pred cCccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc
Confidence 4677888887665 3468999999999999999999999997
No 64
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=63.42 E-value=1.6 Score=36.18 Aligned_cols=45 Identities=27% Similarity=0.255 Sum_probs=33.4
Q ss_pred ccCHHHHHHHHhC-CCEEEeeCChhhhhcCCCCCceeeCCCCCCCCcccC
Q 032868 74 SVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMDDKEPEICG 122 (131)
Q Consensus 74 ~Is~~el~~l~~~-~~~LIDVRep~E~~~ghIpgAi~IPl~~i~~~~~~~ 122 (131)
+++++++...+.. +.+++|.|. +..||.+|+++-+..+..|...|
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~ 50 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTG 50 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhC
Confidence 4678888887754 589999999 67799999887765555554433
No 65
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=56.31 E-value=25 Score=25.63 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCCccCHHHHHHHHhCC-CEEEeeCChhhhhc---CCCCCce--eeCCC
Q 032868 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA---GHATGAI--NVPYM 113 (131)
Q Consensus 70 ~~~~~Is~~el~~l~~~~-~~LIDVRep~E~~~---ghIpgAi--~IPl~ 113 (131)
+....++.++...+.+-+ ..+||.|.+.|.+. -.++|.. |+|+.
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~ 74 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIF 74 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeeccc
Confidence 345678999988887556 68999999999865 2334543 45553
No 66
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=48.31 E-value=8.6 Score=34.23 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=22.1
Q ss_pred CEEEeeCChhhhhcCCCCCceeeC
Q 032868 88 HRYLDVRTPEEFSAGHATGAINVP 111 (131)
Q Consensus 88 ~~LIDVRep~E~~~ghIpgAi~IP 111 (131)
+++||.|+.+.|..||+-.|.|+-
T Consensus 327 FFiVDcRpaeqynaGHlstaFhlD 350 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAFHLD 350 (669)
T ss_pred EEEEeccchhhcccccchhhhccc
Confidence 799999999999999999998864
No 67
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=47.88 E-value=25 Score=29.13 Aligned_cols=45 Identities=31% Similarity=0.269 Sum_probs=33.7
Q ss_pred ccCHHHHHHHHhC-CCEEEeeC---------ChhhhhcCCCCCceeeCCCCCCCC
Q 032868 74 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMDDKEP 118 (131)
Q Consensus 74 ~Is~~el~~l~~~-~~~LIDVR---------ep~E~~~ghIpgAi~IPl~~i~~~ 118 (131)
-++++.+.+.+.+ +..+||.- ...||...|||||.++-++.+..+
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~ 60 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYP 60 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccC
Confidence 3677777777754 47888852 255778899999999999888654
No 68
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=44.67 E-value=34 Score=28.26 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=27.6
Q ss_pred CCccCHHHHHHHHhC-CCEEEeeCChhhhhc---CCCC
Q 032868 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT 105 (131)
Q Consensus 72 ~~~Is~~el~~l~~~-~~~LIDVRep~E~~~---ghIp 105 (131)
...+...++.+.+.+ +..+||+|...+|.- |||+
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 456778888777754 578999999999986 8887
No 69
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=41.32 E-value=29 Score=24.30 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=18.0
Q ss_pred CccCHHHHHHHHhCC-CEEEeeCChhh
Q 032868 73 TSVPVRVAHELLQAG-HRYLDVRTPEE 98 (131)
Q Consensus 73 ~~Is~~el~~l~~~~-~~LIDVRep~E 98 (131)
..++++++.++.+.| ..||+.|...|
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E 39 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGE 39 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCC
Confidence 468999999999888 58999998755
No 70
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=41.13 E-value=30 Score=24.67 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=21.9
Q ss_pred CccCHHHHHHHHhCC-CEEEeeCChhhh
Q 032868 73 TSVPVRVAHELLQAG-HRYLDVRTPEEF 99 (131)
Q Consensus 73 ~~Is~~el~~l~~~~-~~LIDVRep~E~ 99 (131)
..++.+++..+.+-+ ..+||.|.+.|.
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~ 40 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREE 40 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence 568899998887667 689999998774
No 71
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=30.55 E-value=47 Score=23.07 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=14.2
Q ss_pred HHHHHHHHh-CC-CEEEeeCC-hh
Q 032868 77 VRVAHELLQ-AG-HRYLDVRT-PE 97 (131)
Q Consensus 77 ~~el~~l~~-~~-~~LIDVRe-p~ 97 (131)
+++|-+++. .+ -+|||||. |.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~ 25 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPR 25 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCC
Confidence 456666553 44 58999998 44
No 72
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.11 E-value=68 Score=25.30 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.8
Q ss_pred ccCHHHHHHHHhCCCEEEeeCChhhhh
Q 032868 74 SVPVRVAHELLQAGHRYLDVRTPEEFS 100 (131)
Q Consensus 74 ~Is~~el~~l~~~~~~LIDVRep~E~~ 100 (131)
.|+.+|..+.+.++.-+|||.+|.|=.
T Consensus 7 Pin~eEA~eAieGGAdIiDVKNP~EGS 33 (235)
T COG1891 7 PINREEAIEAIEGGADIIDVKNPAEGS 33 (235)
T ss_pred cCCHHHHHHHhhCCCceEeccCcccCc
Confidence 477888888888888999999998854
Done!