Query 032869
Match_columns 131
No_of_seqs 166 out of 1113
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10254 thioesterase; Provisi 99.8 2.3E-21 5.1E-26 139.9 6.2 80 47-127 24-103 (137)
2 PRK10293 acyl-CoA esterase; Pr 99.8 3.3E-21 7.1E-26 138.9 6.5 79 47-126 24-102 (136)
3 PLN02322 acyl-CoA thioesterase 99.8 2.8E-20 6E-25 136.8 5.7 79 47-126 16-94 (154)
4 COG2050 PaaI HGG motif-contain 99.8 4.9E-19 1.1E-23 127.3 6.3 80 47-127 24-103 (141)
5 KOG3328 HGG motif-containing t 99.8 5.2E-19 1.1E-23 128.4 5.1 86 40-128 22-107 (148)
6 TIGR00369 unchar_dom_1 unchara 99.7 2.3E-18 5E-23 119.6 6.0 77 47-124 6-82 (117)
7 PRK11688 hypothetical protein; 99.7 4.1E-18 8.9E-23 124.4 5.7 80 47-127 27-121 (154)
8 TIGR02286 PaaD phenylacetic ac 99.7 9.4E-18 2E-22 116.3 6.5 78 47-127 4-81 (114)
9 TIGR02447 yiiD_Cterm thioester 99.6 8.5E-16 1.9E-20 110.6 5.0 72 47-119 12-86 (138)
10 cd03443 PaaI_thioesterase PaaI 99.4 1.5E-13 3.2E-18 93.3 5.6 76 48-124 3-78 (113)
11 PF14539 DUF4442: Domain of un 99.4 6.5E-13 1.4E-17 94.9 4.5 74 47-120 19-92 (132)
12 cd03442 BFIT_BACH Brown fat-in 99.1 1.3E-10 2.9E-15 79.6 3.8 69 54-124 3-72 (123)
13 PRK10694 acyl-CoA esterase; Pr 99.0 3E-10 6.5E-15 81.5 4.5 70 55-126 8-78 (133)
14 PF03061 4HBT: Thioesterase su 98.8 2.4E-09 5.1E-14 68.1 2.5 52 73-124 1-52 (79)
15 PRK04424 fatty acid biosynthes 98.6 5.8E-08 1.3E-12 73.1 5.8 71 50-125 76-148 (185)
16 KOG4781 Uncharacterized conser 98.6 5.7E-08 1.2E-12 75.4 4.4 69 53-122 121-189 (237)
17 cd00556 Thioesterase_II Thioes 98.6 2.6E-08 5.6E-13 66.0 2.1 53 73-126 14-66 (99)
18 COG1607 Acyl-CoA hydrolase [Li 98.6 8.4E-08 1.8E-12 70.9 4.6 71 55-127 10-81 (157)
19 PLN02647 acyl-CoA thioesterase 98.0 6E-06 1.3E-10 69.8 4.2 68 54-123 286-354 (437)
20 cd00586 4HBT 4-hydroxybenzoyl- 98.0 8.6E-06 1.9E-10 53.3 3.5 64 61-124 3-73 (110)
21 cd03440 hot_dog The hotdog fol 97.9 2.1E-05 4.5E-10 48.2 4.5 64 61-124 3-66 (100)
22 PLN02647 acyl-CoA thioesterase 97.6 6E-05 1.3E-09 63.8 4.0 76 51-126 80-168 (437)
23 PF09500 YiiD_Cterm: Putative 97.4 0.00033 7.1E-09 51.1 4.6 71 47-119 18-92 (144)
24 KOG2763 Acyl-CoA thioesterase 96.6 0.0024 5.2E-08 52.8 3.7 70 52-123 193-263 (357)
25 TIGR02799 thio_ybgC tol-pal sy 95.8 0.0092 2E-07 40.9 3.0 63 61-123 3-73 (126)
26 TIGR00051 acyl-CoA thioester h 95.6 0.011 2.4E-07 39.6 2.6 61 63-123 2-69 (117)
27 PRK10800 acyl-CoA thioesterase 95.2 0.027 5.9E-07 39.1 3.6 64 60-123 4-74 (130)
28 PF13622 4HBT_3: Thioesterase- 94.3 0.035 7.5E-07 42.6 2.5 46 73-123 9-54 (255)
29 cd03449 R_hydratase (R)-hydrat 92.9 0.12 2.6E-06 35.2 3.1 47 73-124 45-91 (128)
30 cd03445 Thioesterase_II_repeat 92.9 0.094 2E-06 35.1 2.4 44 72-121 14-57 (94)
31 COG0824 FcbC Predicted thioest 92.3 0.24 5.1E-06 35.3 4.1 66 58-123 5-77 (137)
32 PRK07531 bifunctional 3-hydrox 90.6 0.35 7.5E-06 41.4 4.0 66 58-123 345-416 (495)
33 cd03441 R_hydratase_like (R)-h 90.3 0.25 5.5E-06 33.3 2.5 49 72-124 41-89 (127)
34 PF13279 4HBT_2: Thioesterase- 87.9 0.55 1.2E-05 31.7 2.8 56 66-122 2-63 (121)
35 COG4109 Predicted transcriptio 85.7 0.6 1.3E-05 39.1 2.3 77 41-122 318-394 (432)
36 PRK00006 fabZ (3R)-hydroxymyri 84.2 4.1 8.9E-05 28.7 5.9 75 51-125 28-111 (147)
37 cd01288 FabZ FabZ is a 17kD be 80.3 8.2 0.00018 26.1 6.0 74 50-123 12-95 (131)
38 PF01575 MaoC_dehydratas: MaoC 78.9 2.2 4.9E-05 29.2 2.8 47 74-124 51-97 (122)
39 cd03447 FAS_MaoC FAS_MaoC, the 73.2 3.8 8.2E-05 28.6 2.7 47 74-124 43-89 (126)
40 cd03455 SAV4209 SAV4209 is a S 71.5 3.9 8.4E-05 27.9 2.4 44 75-124 45-88 (123)
41 PLN02868 acyl-CoA thioesterase 70.6 4.6 0.0001 33.6 3.1 64 48-120 135-198 (413)
42 TIGR00189 tesB acyl-CoA thioes 70.5 5.8 0.00013 30.8 3.5 64 59-123 167-234 (271)
43 COG1946 TesB Acyl-CoA thioeste 70.1 2.8 6.1E-05 34.0 1.6 50 75-124 193-247 (289)
44 cd03446 MaoC_like MoaC_like 68.5 5.2 0.00011 27.6 2.6 47 75-124 52-99 (140)
45 cd00493 FabA_FabZ FabA/Z, beta 67.1 22 0.00047 23.8 5.5 74 50-123 11-96 (131)
46 cd03450 NodN NodN (nodulation 65.3 5.2 0.00011 28.9 2.1 50 75-125 58-107 (149)
47 TIGR00189 tesB acyl-CoA thioes 64.3 6.1 0.00013 30.7 2.5 43 74-122 21-63 (271)
48 cd03453 SAV4209_like SAV4209_l 63.8 7.2 0.00016 26.8 2.6 44 75-124 46-89 (127)
49 cd03444 Thioesterase_II_repeat 58.3 9.7 0.00021 25.6 2.4 49 75-123 16-68 (104)
50 cd03448 HDE_HSD HDE_HSD The R 57.9 8.6 0.00019 26.7 2.1 47 74-124 45-91 (122)
51 COG5496 Predicted thioesterase 57.9 12 0.00027 26.8 2.9 53 70-122 25-77 (130)
52 cd03451 FkbR2 FkbR2 is a Strep 51.0 11 0.00024 26.1 1.8 46 74-124 54-100 (146)
53 cd03452 MaoC_C MaoC_C The C-t 50.6 13 0.00027 26.2 2.0 45 75-124 52-97 (142)
54 COG2030 MaoC Acyl dehydratase 48.1 18 0.00039 26.2 2.5 48 75-125 69-116 (159)
55 cd03454 YdeM YdeM is a Bacillu 46.9 21 0.00045 24.7 2.6 17 108-124 81-97 (140)
56 TIGR01750 fabZ beta-hydroxyacy 45.6 73 0.0016 21.9 5.3 74 50-123 20-105 (140)
57 PRK10526 acyl-CoA thioesterase 43.4 25 0.00055 27.9 2.9 63 49-122 12-74 (286)
58 PRK08190 bifunctional enoyl-Co 41.4 26 0.00056 29.9 2.8 45 75-124 60-104 (466)
59 PRK10526 acyl-CoA thioesterase 40.0 27 0.00059 27.7 2.6 50 75-124 193-247 (286)
60 PLN02864 enoyl-CoA hydratase 31.2 39 0.00084 27.4 2.2 61 59-123 204-273 (310)
61 PLN02868 acyl-CoA thioesterase 30.9 39 0.00085 28.1 2.3 50 75-124 326-378 (413)
62 TIGR00074 hypC_hupF hydrogenas 29.3 35 0.00076 22.1 1.4 22 105-126 25-46 (76)
63 PF01455 HupF_HypC: HupF/HypC 25.6 44 0.00096 21.0 1.3 21 105-125 27-47 (68)
64 PRK13692 (3R)-hydroxyacyl-ACP 25.0 36 0.00078 24.7 0.9 19 106-124 87-105 (159)
65 PF07977 FabA: FabA-like domai 23.7 2.5E+02 0.0053 19.2 5.0 62 59-120 27-101 (138)
66 COG3510 CmcI Cephalosporin hyd 21.8 59 0.0013 25.4 1.6 51 62-118 65-115 (237)
67 PF02551 Acyl_CoA_thio: Acyl-C 21.6 50 0.0011 23.7 1.1 49 75-124 45-96 (131)
No 1
>PRK10254 thioesterase; Provisional
Probab=99.84 E-value=2.3e-21 Score=139.93 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=72.5
Q ss_pred ceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccceeee
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFHFE 126 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~~~ 126 (131)
+|+++.++++|+++++|+++++|+|++|++|||++++|+|+++++|+.+..+++..++|+|+++|||||++.| .++.-+
T Consensus 24 LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g-~l~a~a 102 (137)
T PRK10254 24 LGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEG-KVRGVC 102 (137)
T ss_pred hCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCC-eEEEEE
Confidence 3999999999999999999999999999999999999999999999887666778899999999999999988 465544
Q ss_pred e
Q 032869 127 H 127 (131)
Q Consensus 127 ~ 127 (131)
+
T Consensus 103 ~ 103 (137)
T PRK10254 103 Q 103 (137)
T ss_pred E
Confidence 3
No 2
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.84 E-value=3.3e-21 Score=138.89 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=71.4
Q ss_pred ceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccceeee
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFHFE 126 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~~~ 126 (131)
+|+++.++++|+++++|+++|+|+|++|.+|||+++||+|+++++++.+..+.+..++|+|+++|||+|++.|+ +..-+
T Consensus 24 LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g~-l~a~a 102 (136)
T PRK10293 24 LDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGR-VRGVC 102 (136)
T ss_pred cCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCce-EEEEE
Confidence 39999999999999999999999999999999999999999999988776666677899999999999999984 55443
No 3
>PLN02322 acyl-CoA thioesterase
Probab=99.81 E-value=2.8e-20 Score=136.80 Aligned_cols=79 Identities=23% Similarity=0.200 Sum_probs=69.9
Q ss_pred ceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccceeee
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFHFE 126 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~~~ 126 (131)
+|+++.++++|+++++|+++++|+|++|++|||++++|+|+++++++.... ....++|+|+++|||||++.|+.++.-+
T Consensus 16 LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~-~~~~~vTiel~infLrpa~~G~~L~Aea 94 (154)
T PLN02322 16 LGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMAS-GFKRVAGIQLSINHLKSADLGDLVFAEA 94 (154)
T ss_pred CCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhcc-CCCceEEEEEEEEEeccCCCCCEEEEEE
Confidence 499999999999999999999999999999999999999999998876432 3346789999999999999998776543
No 4
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=4.9e-19 Score=127.30 Aligned_cols=80 Identities=26% Similarity=0.311 Sum_probs=73.7
Q ss_pred ceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccceeee
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFHFE 126 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~~~ 126 (131)
+|+++.++++|+++++|++.+++.|+.|++|||++++|+|+++++|+++..+.....+|+++|+||+||++.|+ |..-+
T Consensus 24 lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a 102 (141)
T COG2050 24 LGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAEA 102 (141)
T ss_pred cCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEEE
Confidence 49999999999999999999999999999999999999999999999998776677789999999999999999 76554
Q ss_pred e
Q 032869 127 H 127 (131)
Q Consensus 127 ~ 127 (131)
.
T Consensus 103 ~ 103 (141)
T COG2050 103 R 103 (141)
T ss_pred E
Confidence 3
No 5
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.76 E-value=5.2e-19 Score=128.37 Aligned_cols=86 Identities=27% Similarity=0.309 Sum_probs=74.4
Q ss_pred cccccccceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCc
Q 032869 40 SYSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHN 119 (131)
Q Consensus 40 ~~~~~~~~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g 119 (131)
|.+.+ .++++..++||++.|+|+++++|+|++|++|||++|||+|..+++|+... ....+.+++||+|+||+||+.|
T Consensus 22 Fd~~~--~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~-~~~~~gvsvdLsvsyL~~AklG 98 (148)
T KOG3328|consen 22 FDRVL--NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMT-SGFKPGVSVDLSVSYLSSAKLG 98 (148)
T ss_pred hhhhc--CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhc-cCCCCceEEEEEhhhccccCCC
Confidence 44443 79999999999999999999999999999999999999999999976544 3456677899999999999999
Q ss_pred ccceeeeec
Q 032869 120 VSSFHFEHS 128 (131)
Q Consensus 120 ~~~~~~~~~ 128 (131)
+++.-=+|.
T Consensus 99 e~l~i~a~~ 107 (148)
T KOG3328|consen 99 EELEIEATV 107 (148)
T ss_pred CeEEEEEEE
Confidence 998755443
No 6
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.74 E-value=2.3e-18 Score=119.64 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=69.7
Q ss_pred ceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
+|+++.++++|++++++++.|+++|+.|++|||++++++|.++++++.....++..++|++++++|+||++.| ++..
T Consensus 6 lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a 82 (117)
T TIGR00369 6 LGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRA 82 (117)
T ss_pred cCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEE
Confidence 4999999999999999999999999999999999999999999887766555677788999999999999999 6654
No 7
>PRK11688 hypothetical protein; Provisional
Probab=99.73 E-value=4.1e-18 Score=124.40 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=67.7
Q ss_pred ceeeEeeeecceeEEEeecchhhhh--hcccccchhhhhhhhhHHHhhhheeeec-------------cceeeeeecccc
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILN--FFGGIHGGAIAAFSERMAIACARTVVAE-------------DKEIFLGELGIS 111 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N--~~G~lHGG~iatL~D~a~g~a~~~~~~~-------------~~~~~T~dl~v~ 111 (131)
+|+++.++++|+++++|+++++|+| +.|.+|||+++||+|+++++|+++.... ...++|+||++|
T Consensus 27 lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~ 106 (154)
T PRK11688 27 LGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVD 106 (154)
T ss_pred hCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEE
Confidence 3999999999999999999999996 6899999999999999999998764211 124679999999
Q ss_pred ccccCCCcccceeeee
Q 032869 112 YLSAAPHNVSSFHFEH 127 (131)
Q Consensus 112 yl~pa~~g~~~~~~~~ 127 (131)
||||++ |+++..-++
T Consensus 107 fl~p~~-g~~l~a~a~ 121 (154)
T PRK11688 107 YLRPGR-GERFTATSS 121 (154)
T ss_pred eeccCC-CCeEEEEEE
Confidence 999997 777766543
No 8
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.72 E-value=9.4e-18 Score=116.33 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=68.7
Q ss_pred ceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccceeee
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFHFE 126 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~~~ 126 (131)
+|+++.++++|+++++|+++++|+|+.|++|||++++++|.+++.++... +...+|++++++|+||++.|+++..=+
T Consensus 4 lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~---~~~~~t~~~~i~f~rp~~~G~~l~~~a 80 (114)
T TIGR02286 4 LGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSY---GDAAVAAQCTIDFLRPGRAGERLEAEA 80 (114)
T ss_pred cCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCC---CCceEEEEEEEEEecCCCCCCEEEEEE
Confidence 49999999999999999999999999999999999999999988776543 234578999999999999999887644
Q ss_pred e
Q 032869 127 H 127 (131)
Q Consensus 127 ~ 127 (131)
+
T Consensus 81 ~ 81 (114)
T TIGR02286 81 V 81 (114)
T ss_pred E
Confidence 4
No 9
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.60 E-value=8.5e-16 Score=110.63 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=60.8
Q ss_pred ceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhhe---eeeccceeeeeeccccccccCCCc
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACART---VVAEDKEIFLGELGISYLSAAPHN 119 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~---~~~~~~~~~T~dl~v~yl~pa~~g 119 (131)
+|+++.++++|++++++|++++ +|+.|++|||+++||+|.++..++.. ....+..++|+|+++||++|++.+
T Consensus 12 lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~ 86 (138)
T TIGR02447 12 MGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGD 86 (138)
T ss_pred cCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCC
Confidence 3999999999999999999997 89999999999999999876654422 112235678999999999999975
No 10
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.45 E-value=1.5e-13 Score=93.27 Aligned_cols=76 Identities=28% Similarity=0.364 Sum_probs=67.8
Q ss_pred eeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 48 HIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 48 gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
|+++.+.+++++++++++++.++|..|.+|||++++++|.+++..+....+++...++.+++++|++|++. +++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~ 78 (113)
T cd03443 3 GIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTA 78 (113)
T ss_pred cEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEE
Confidence 78899999999999999999999999999999999999999998887765455667889999999999999 65543
No 11
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.36 E-value=6.5e-13 Score=94.89 Aligned_cols=74 Identities=22% Similarity=0.386 Sum_probs=57.2
Q ss_pred ceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcc
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNV 120 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~ 120 (131)
.|+++.++++++++++|+.+++..|+.|++|||++++++|.++|+.+....+.+..+...+++++|++|++.+-
T Consensus 19 ~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~g~v 92 (132)
T PF14539_consen 19 AGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPARGDV 92 (132)
T ss_dssp CT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S---S-E
T ss_pred ceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccCCcE
Confidence 59999999999999999999999999999999999999999999888777766666667899999999988763
No 12
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.06 E-value=1.3e-10 Score=79.60 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=57.7
Q ss_pred eecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeec-cccccccCCCccccee
Q 032869 54 IQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNVSSFH 124 (131)
Q Consensus 54 ~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl-~v~yl~pa~~g~~~~~ 124 (131)
.++++++++++++++++|+.|.+|||++++++|.+++.++.... ....++..+ +++|++|++.|+++.-
T Consensus 3 ~~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~--~~~~~~~~~~~~~f~~p~~~gd~l~i 72 (123)
T cd03442 3 MEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHA--GGRVVTASVDRIDFLKPVRVGDVVEL 72 (123)
T ss_pred CCccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHh--CCcEEEEEECceEEcCccccCcEEEE
Confidence 36889999999999999999999999999999999988765432 223456677 7999999999998653
No 13
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.03 E-value=3e-10 Score=81.53 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=59.9
Q ss_pred ecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeec-cccccccCCCcccceeee
Q 032869 55 QRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNVSSFHFE 126 (131)
Q Consensus 55 ~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl-~v~yl~pa~~g~~~~~~~ 126 (131)
.++...++..+.|+++|.+|.+|||.+++++|.++++++.... +..++|+.+ .++|++|++.||.+.-.+
T Consensus 8 ~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~--~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a 78 (133)
T PRK10694 8 PQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIA--HGRVVTVRVEGMTFLRPVAVGDVVCCYA 78 (133)
T ss_pred CCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHc--CCceEEEEECceEECCCcccCcEEEEEE
Confidence 5677888899999999999999999999999999998886542 345788999 779999999999985443
No 14
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.82 E-value=2.4e-09 Score=68.05 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=44.9
Q ss_pred cccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 73 ~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
+|++|||.+++++|.++..+...........++.+++++|++|++.|+.+..
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~ 52 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRV 52 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEE
Confidence 5899999999999999999988876555677889999999999999988754
No 15
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.64 E-value=5.8e-08 Score=73.14 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=58.5
Q ss_pred eEeeeecc-eeEEEeecchhhh-hhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccceee
Q 032869 50 KVHKIQRG-RLICHLSVKPAIL-NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFHF 125 (131)
Q Consensus 50 ~~~~~~~g-~~~~~l~v~~~~~-N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~~ 125 (131)
++.++++| ++++.+.+++++. |..+++|||++++++|.++.++. .+..+++...+++|++|+++||.++.=
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~~-----~~~~~~~~i~~irF~kPV~pGD~L~~e 148 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAVI-----DAELALTGVANIRFKRPVKLGERVVAK 148 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHhc-----CCcEEEEEeeeEEEccCCCCCCEEEEE
Confidence 57788899 7999999999999 99999999999999998643321 234466778899999999999988743
No 16
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=5.7e-08 Score=75.38 Aligned_cols=69 Identities=23% Similarity=0.344 Sum_probs=59.9
Q ss_pred eeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccc
Q 032869 53 KIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSS 122 (131)
Q Consensus 53 ~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~ 122 (131)
....++..+-+-...+++++.|.+|||+|||++|.+..+|++...+ .+..+|.+|+++|.+|++....+
T Consensus 121 d~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~p-nk~~vTanLsisy~~pip~~~f~ 189 (237)
T KOG4781|consen 121 DPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALP-NKIGVTANLSISYKRPIPTNHFV 189 (237)
T ss_pred ecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCC-chhheeeecccccCCCcccceEE
Confidence 4467888899999999999999999999999999999999987654 45567999999999999987543
No 17
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.58 E-value=2.6e-08 Score=65.99 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=44.5
Q ss_pred cccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccceeee
Q 032869 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFHFE 126 (131)
Q Consensus 73 ~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~~~ 126 (131)
.+.+|||++++++|.+++.++....+ ....+|++++++|++|++.++|++.=.
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~-~~~~~t~~~~i~F~~~~~~~~~~~~~~ 66 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHG-ASGFASLDHHIYFHRPGDADEWLLYEV 66 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccC-CCCeeeeEEEEEEcCCCCCCccEEEEE
Confidence 78999999999999999988765433 445679999999999999999887543
No 18
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=98.56 E-value=8.4e-08 Score=70.86 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=60.4
Q ss_pred ecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeec-cccccccCCCcccceeeee
Q 032869 55 QRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNVSSFHFEH 127 (131)
Q Consensus 55 ~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl-~v~yl~pa~~g~~~~~~~~ 127 (131)
..+.+.++--+-|...|+.|.+|||.+.+++|.++++++.-.. +..++|+.+ .++|++|++.|+.|--++.
T Consensus 10 ~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a--~~~vVTasvd~v~F~~Pv~vGd~v~~~a~ 81 (157)
T COG1607 10 PEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHA--GGRVVTASVDSVDFKKPVRVGDIVCLYAR 81 (157)
T ss_pred CCceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHh--CCeEEEEEeceEEEccccccCcEEEEEEE
Confidence 3666778888999999999999999999999999999887653 346788888 8999999999998866654
No 19
>PLN02647 acyl-CoA thioesterase
Probab=98.00 E-value=6e-06 Score=69.79 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=57.9
Q ss_pred eecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeec-cccccccCCCcccce
Q 032869 54 IQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNVSSF 123 (131)
Q Consensus 54 ~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl-~v~yl~pa~~g~~~~ 123 (131)
..+-+++....+.|++.|.+|.++||.++..+|.++++++.... +..++|+.+ .++|++|++.|+.|.
T Consensus 286 m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a--~~~~vt~svd~v~F~~PV~vGdil~ 354 (437)
T PLN02647 286 IRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFA--GLRPYFLEVDHVDFLRPVDVGDFLR 354 (437)
T ss_pred ccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHc--CCceEEEEecceEecCccccCcEEE
Confidence 35567788888999999999999999999999999998877653 345777777 899999999999876
No 20
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=97.96 E-value=8.6e-06 Score=53.30 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=52.6
Q ss_pred EEeecchhhhhhcccccchhhhhhhhhHHHhhhheee-------eccceeeeeeccccccccCCCccccee
Q 032869 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 61 ~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~-------~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
.++++.+..+|+.|.+|+|.+++++|.+....+...+ ..+....+.+.+++|++|++.|+.+.-
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v 73 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTV 73 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEE
Confidence 4678999999999999999999999999876654432 234456788999999999999998754
No 21
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=97.91 E-value=2.1e-05 Score=48.17 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=52.6
Q ss_pred EEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 61 ~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
..+++.+...|..+.+|||.+..++|.+................+.+++++|.+|++.|+++.-
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 66 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTV 66 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEE
Confidence 4677888889999999999999999999887765433234556678999999999999998764
No 22
>PLN02647 acyl-CoA thioesterase
Probab=97.61 E-value=6e-05 Score=63.77 Aligned_cols=76 Identities=9% Similarity=0.017 Sum_probs=58.5
Q ss_pred EeeeecceeEEEeec------chhhhhhcccccchhhhhhhhhHHHhhhheeeecc------ceeeeeec-cccccccCC
Q 032869 51 VHKIQRGRLICHLSV------KPAILNFFGGIHGGAIAAFSERMAIACARTVVAED------KEIFLGEL-GISYLSAAP 117 (131)
Q Consensus 51 ~~~~~~g~~~~~l~v------~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~------~~~~T~dl-~v~yl~pa~ 117 (131)
.....+-++++..++ .+.+.|+.|.+|||-++..+|.++++++..+.... ..++|+.+ +|+|++|++
T Consensus 80 ~k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~ 159 (437)
T PLN02647 80 TKTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIR 159 (437)
T ss_pred ccccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCc
Confidence 334456678888854 45559999999999999999999999987664321 15788888 899999999
Q ss_pred Ccccceeee
Q 032869 118 HNVSSFHFE 126 (131)
Q Consensus 118 ~g~~~~~~~ 126 (131)
.|+.|-=.+
T Consensus 160 ~g~~v~l~g 168 (437)
T PLN02647 160 VDVDLKIVG 168 (437)
T ss_pred CCcEEEEEE
Confidence 998765433
No 23
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=97.36 E-value=0.00033 Score=51.12 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=46.3
Q ss_pred ceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhhee----eeccceeeeeeccccccccCCCc
Q 032869 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTV----VAEDKEIFLGELGISYLSAAPHN 119 (131)
Q Consensus 47 ~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~----~~~~~~~~T~dl~v~yl~pa~~g 119 (131)
.||++...++++++++.|..++ .|..|+.-||-+++++=. +|++.... .+....++-.+-+++|++|+..+
T Consensus 18 Mgi~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatL-aGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~~d 92 (144)
T PF09500_consen 18 MGIKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATL-AGWGLVWLQLKEAGLNGDIVIADSNIRYLKPVTGD 92 (144)
T ss_dssp TT-EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHH-HHHHHHHHHHHHHT---EEEEEEEEEEE-S---S-
T ss_pred cCcEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHH-HHHHHHHHHHHHhCCCCcEEEEeCceEEcCCCCCC
Confidence 4999999999999999999996 899999999999999864 44443221 11224566789999999999876
No 24
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=96.56 E-value=0.0024 Score=52.79 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=56.1
Q ss_pred eeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeec-cccccccCCCcccce
Q 032869 52 HKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNVSSF 123 (131)
Q Consensus 52 ~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl-~v~yl~pa~~g~~~~ 123 (131)
....+..+....-..|++.|.+|.++||.++-.++.++...+...+. ..+.+..+ .|+|.+|+..|..+.
T Consensus 193 ~~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~--~~p~~rsVD~i~F~~pVdvG~~L~ 263 (357)
T KOG2763|consen 193 VWMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCK--GRPATRSVDDIEFQKPVDVGCVLT 263 (357)
T ss_pred eEeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcC--CCceEEEechhhccCcceeeeEEE
Confidence 44567788888899999999999999999999999998877766542 23344455 799999999998654
No 25
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=95.83 E-value=0.0092 Score=40.85 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=48.5
Q ss_pred EEeecchhhhhhcccccchhhhhhhhhHHHhhhheee--------eccceeeeeeccccccccCCCcccce
Q 032869 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV--------AEDKEIFLGELGISYLSAAPHNVSSF 123 (131)
Q Consensus 61 ~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~--------~~~~~~~T~dl~v~yl~pa~~g~~~~ 123 (131)
.+++++...+++.|.+|.+.+..+++.+........+ ..+...+.++.+++|++|++.|++|.
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~ 73 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLT 73 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEE
Confidence 4677888899999999999999999977654432211 11344567899999999999999864
No 26
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=95.58 E-value=0.011 Score=39.60 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=46.5
Q ss_pred eecchhhhhhcccccchhhhhhhhhHHHhhhheee-------eccceeeeeeccccccccCCCcccce
Q 032869 63 LSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNVSSF 123 (131)
Q Consensus 63 l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~-------~~~~~~~T~dl~v~yl~pa~~g~~~~ 123 (131)
++++...+++.|.+|-+.+..+++.+........+ ..+...++++.+++|++|++.||.|.
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~ 69 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLE 69 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEE
Confidence 46777889999999999999999988654332211 12344567899999999999998863
No 27
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=95.19 E-value=0.027 Score=39.09 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=50.3
Q ss_pred EEEeecchhhhhhcccccchhhhhhhhhHHHhhhheee-------eccceeeeeeccccccccCCCcccce
Q 032869 60 ICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNVSSF 123 (131)
Q Consensus 60 ~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~-------~~~~~~~T~dl~v~yl~pa~~g~~~~ 123 (131)
..+.+++...++..|.+|=+.+..+++.+........+ ..+...+.++.+++|.+|++.||+|.
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~ 74 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLE 74 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEE
Confidence 35677888899999999999999999988764433221 12345677899999999999999874
No 28
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=94.26 E-value=0.035 Score=42.65 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=28.6
Q ss_pred cccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccce
Q 032869 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSF 123 (131)
Q Consensus 73 ~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~ 123 (131)
.+.+|||++++++=.++-... ........+++++|++|++.|...+
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~-----~~~~~~~~s~~~~fl~p~~~~~~~~ 54 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA-----PPPGFDPHSLHVYFLRPVPPGPVEY 54 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH-----TTTSSEEEEEEEEESS--BSCEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc-----cCCCCceEEEEeEeccccccCCEEE
Confidence 678999988877655544333 1122345799999999999994443
No 29
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=92.95 E-value=0.12 Score=35.16 Aligned_cols=47 Identities=9% Similarity=-0.089 Sum_probs=33.4
Q ss_pred cccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 73 ~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
.-++||..++++++.++... .++......+.+++|++|+..|+.+.-
T Consensus 45 ~~i~~g~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~f~~Pv~~gd~l~~ 91 (128)
T cd03449 45 GRIAHGMLTASLISAVLGTL-----LPGPGTIYLSQSLRFLRPVFIGDTVTA 91 (128)
T ss_pred CceecHHHHHHHHHHHHhcc-----CCCceEEEEEEEEEECCCccCCCEEEE
Confidence 45899999999987654321 122334456789999999999998653
No 30
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=92.86 E-value=0.094 Score=35.08 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=32.6
Q ss_pred hcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccc
Q 032869 72 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVS 121 (131)
Q Consensus 72 ~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~ 121 (131)
..+.+|||.+++++-.++...+ +.+. ....++.+|++|+..+..
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~----~~~~--~~~s~~~~Fl~p~~~~~p 57 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV----PDDR--VPHSLHSYFLRPGDPDQP 57 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC----CCCC--CeEEEEEEecCCCCCCCC
Confidence 5789999999999887766443 2222 246899999999987543
No 31
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=92.32 E-value=0.24 Score=35.30 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=51.9
Q ss_pred eeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheee-------eccceeeeeeccccccccCCCcccce
Q 032869 58 RLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNVSSF 123 (131)
Q Consensus 58 ~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~-------~~~~~~~T~dl~v~yl~pa~~g~~~~ 123 (131)
....+++|+-..+...|.+|=+.+..+.+.+-.......+ ..+...++++++++|++|++.||.+.
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~ 77 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLT 77 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEE
Confidence 3456788888999999999999999999988765554421 11234678899999999999999864
No 32
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.57 E-value=0.35 Score=41.44 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=51.2
Q ss_pred eeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheee------eccceeeeeeccccccccCCCcccce
Q 032869 58 RLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV------AEDKEIFLGELGISYLSAAPHNVSSF 123 (131)
Q Consensus 58 ~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~------~~~~~~~T~dl~v~yl~pa~~g~~~~ 123 (131)
..+.+++|++.+++..|.++=+.+..++|.+..-.....+ ..+...++++.+++|++|++.||.|.
T Consensus 345 ~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~ 416 (495)
T PRK07531 345 LRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALH 416 (495)
T ss_pred eEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEE
Confidence 4467999999999999999999999999988653322211 11335567899999999999998864
No 33
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=90.35 E-value=0.25 Score=33.32 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=35.4
Q ss_pred hcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 72 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 72 ~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
+.-++||..+++++..+....... .........+++|.+|+..||.+..
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~f~~Pv~~Gd~l~~ 89 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWLPG----TDGANLGSQSVRFLAPVFPGDTLRV 89 (127)
T ss_pred CCceechHHHHHHHHhhhhhhccC----cccceeEEeEEEEeCCcCCCCEEEE
Confidence 456899999999988765443211 1223346889999999999998864
No 34
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=87.93 E-value=0.55 Score=31.68 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=36.5
Q ss_pred chhhhhhcccccchhhhhhhhhHHHhhhh-----e-eeeccceeeeeeccccccccCCCcccc
Q 032869 66 KPAILNFFGGIHGGAIAAFSERMAIACAR-----T-VVAEDKEIFLGELGISYLSAAPHNVSS 122 (131)
Q Consensus 66 ~~~~~N~~G~lHGG~iatL~D~a~g~a~~-----~-~~~~~~~~~T~dl~v~yl~pa~~g~~~ 122 (131)
+...++ .|.+|-+.+..++|.+-..... . ....+...++++.+++|++|++.+|.+
T Consensus 2 r~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~ 63 (121)
T PF13279_consen 2 RWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRL 63 (121)
T ss_dssp -GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEE
T ss_pred CHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEE
Confidence 455688 9999999999999987543331 1 112244667889999999999999986
No 35
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=85.74 E-value=0.6 Score=39.14 Aligned_cols=77 Identities=16% Similarity=0.319 Sum_probs=54.7
Q ss_pred ccccccceeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcc
Q 032869 41 YSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNV 120 (131)
Q Consensus 41 ~~~~~~~gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~ 120 (131)
++..+.+++.-...+.+ .+..+.|.+.|+.|++.-|+++.++-.+.-...... ..+.+.-=++++-||+|++.++
T Consensus 318 ~~d~I~~~l~e~~~~~~---~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~--~~~niiIE~i~iyflk~vqid~ 392 (432)
T COG4109 318 ISDQIANNLSEKGDEYG---VTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKK--KKRNIIIENITIYFLKPVQIDS 392 (432)
T ss_pred HHHHHHhhhhhhccccc---eEEEechhhccccccchHHHHHHHHHHHHHHHHHHh--cCCceEEEeeeeeeecceeccc
Confidence 34444455543332222 238899999999999999999999988887665543 2334444588999999999887
Q ss_pred cc
Q 032869 121 SS 122 (131)
Q Consensus 121 ~~ 122 (131)
.+
T Consensus 393 ~l 394 (432)
T COG4109 393 VL 394 (432)
T ss_pred EE
Confidence 65
No 36
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=84.20 E-value=4.1 Score=28.69 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=41.7
Q ss_pred Eeeeec-ceeEEEeecchhhh--h----hcccccchhhhhhhhhHHHhhhhee-eeccceeeeeec-cccccccCCCccc
Q 032869 51 VHKIQR-GRLICHLSVKPAIL--N----FFGGIHGGAIAAFSERMAIACARTV-VAEDKEIFLGEL-GISYLSAAPHNVS 121 (131)
Q Consensus 51 ~~~~~~-g~~~~~l~v~~~~~--N----~~G~lHGG~iatL~D~a~g~a~~~~-~~~~~~~~T~dl-~v~yl~pa~~g~~ 121 (131)
+.++++ ++++....++++.. . ....++|=++.-.+-.++++.+... ...+.......+ ++.|++|++.||.
T Consensus 28 i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~ 107 (147)
T PRK00006 28 VLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQ 107 (147)
T ss_pred EEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCE
Confidence 445554 67888888877643 2 2345777555443444444322111 111222222233 7999999999998
Q ss_pred ceee
Q 032869 122 SFHF 125 (131)
Q Consensus 122 ~~~~ 125 (131)
+.--
T Consensus 108 l~i~ 111 (147)
T PRK00006 108 LILE 111 (147)
T ss_pred EEEE
Confidence 7643
No 37
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=80.27 E-value=8.2 Score=26.11 Aligned_cols=74 Identities=12% Similarity=0.028 Sum_probs=43.7
Q ss_pred eEeeee-cceeEEEeecchhh--hhhc----ccccchhhhhhhhhHHHhhhheeee--cccee-eeeeccccccccCCCc
Q 032869 50 KVHKIQ-RGRLICHLSVKPAI--LNFF----GGIHGGAIAAFSERMAIACARTVVA--EDKEI-FLGELGISYLSAAPHN 119 (131)
Q Consensus 50 ~~~~~~-~g~~~~~l~v~~~~--~N~~----G~lHGG~iatL~D~a~g~a~~~~~~--~~~~~-~T~dl~v~yl~pa~~g 119 (131)
++.+++ ++.++....+++++ ...+ ..++|=++.-++..+++........ .+... ...--++.|.+|++.|
T Consensus 12 ~i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pg 91 (131)
T cd01288 12 RVLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPG 91 (131)
T ss_pred EEEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCC
Confidence 345556 46777777777753 3322 6777766655555555554322110 12222 2334699999999999
Q ss_pred ccce
Q 032869 120 VSSF 123 (131)
Q Consensus 120 ~~~~ 123 (131)
+.+.
T Consensus 92 d~l~ 95 (131)
T cd01288 92 DQLI 95 (131)
T ss_pred CEEE
Confidence 9864
No 38
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=78.92 E-value=2.2 Score=29.19 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=29.8
Q ss_pred ccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 74 G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
-++||-.+++++-....-... .........++++|++|+..|+++.-
T Consensus 51 ~ivhG~~~~a~~~~~~~~~~~----~~~~~~~~~~~~rF~~PV~~gdtl~~ 97 (122)
T PF01575_consen 51 PIVHGMLTLALASGLLGDWLG----PNPPARLGRFNVRFRAPVFPGDTLTA 97 (122)
T ss_dssp SB-BHHHHHHHHHHHHHHHHS----TTECEEEEEEEEEESS--BTTEEEEE
T ss_pred EEEccHHHHHHHHHHHHHhcc----CccceEEEEEEEEEeccccCCCEEEE
Confidence 489999998887644433321 11123346889999999999998863
No 39
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=73.22 E-value=3.8 Score=28.61 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=30.9
Q ss_pred ccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 74 G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
=++||-..++++-.+.+.. ...+.......++++|++|+..||.+..
T Consensus 43 ~iahG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~rf~~PV~~gdtl~~ 89 (126)
T cd03447 43 TITHGMYTSAAVRALVETW----AADNDRSRVRSFTASFVGMVLPNDELEV 89 (126)
T ss_pred CeechhHHHHHHHHHHHHh----ccCCCcceEEEEEEEEcccCcCCCEEEE
Confidence 4689988888875543221 1111222235679999999999998874
No 40
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=71.47 E-value=3.9 Score=27.92 Aligned_cols=44 Identities=9% Similarity=0.026 Sum_probs=30.7
Q ss_pred cccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 75 GIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
++||...++++..+..-. .+.+ .....++++|.+|+..||.+..
T Consensus 45 ia~G~~~~~~~~~~~~~~----~~~~--~~~~~~~~rf~~pv~~Gdtl~~ 88 (123)
T cd03455 45 YVNGPTLAGLVIRYVTDW----AGPD--ARVKSFAFRLGAPLYAGDTLRF 88 (123)
T ss_pred EEEHHHHHHHHHHHHHHc----cCCc--ceEEEEEEEeeccccCCCEEEE
Confidence 689999999887654322 1111 1224679999999999998863
No 41
>PLN02868 acyl-CoA thioesterase family protein
Probab=70.64 E-value=4.6 Score=33.65 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=38.4
Q ss_pred eeeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcc
Q 032869 48 HIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNV 120 (131)
Q Consensus 48 gi~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~ 120 (131)
-++++.++++.-+...+ +.. +..+.++||.+++.+= .+|..+. +++..+ ..++++|++|+..+.
T Consensus 135 ~~~l~~~~~~~f~~~~~--~~~-~~~~~~fGG~~~aqal---~Aa~~~~-~~~~~~--~s~~~~Fl~~~~~~~ 198 (413)
T PLN02868 135 ILHLEPLEVDIFRGITL--PDA-PTFGKVFGGQLVGQAL---AAASKTV-DPLKLV--HSLHAYFLLVGDINL 198 (413)
T ss_pred hcCcEeccCCeEECCcC--CCC-cccccccchHHHHHHH---HHHHccC-CCCCCc--eEeeeeecCCCCCCC
Confidence 35566666666554433 221 2357899999998743 2233332 233333 488999999988754
No 42
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=70.50 E-value=5.8 Score=30.76 Aligned_cols=64 Identities=8% Similarity=-0.074 Sum_probs=39.4
Q ss_pred eEEEeecchhhhhhcccccchhhhhhhhhHH-Hhhhheeeecc---ceeeeeeccccccccCCCcccce
Q 032869 59 LICHLSVKPAILNFFGGIHGGAIAAFSERMA-IACARTVVAED---KEIFLGELGISYLSAAPHNVSSF 123 (131)
Q Consensus 59 ~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~-g~a~~~~~~~~---~~~~T~dl~v~yl~pa~~g~~~~ 123 (131)
..+-+..++.+-+. -.+|=-.++.++|... ..+........ ...+++|.++.|.++.+.++|++
T Consensus 167 ~~~W~R~~~~l~~d-~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l 234 (271)
T TIGR00189 167 QYVWRRARGSLPDD-PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLL 234 (271)
T ss_pred EEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEE
Confidence 33444444333221 3447788999999832 33333322111 33468999999999989999987
No 43
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=70.05 E-value=2.8 Score=33.98 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=36.7
Q ss_pred cccchhhhhhhhhHHHhhh-heee----eccceeeeeeccccccccCCCccccee
Q 032869 75 GIHGGAIAAFSERMAIACA-RTVV----AEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~-~~~~----~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
.+|--+++-+-|...-..+ ..++ .++..++++|=++-|+||.+.++|+|-
T Consensus 193 ~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy 247 (289)
T COG1946 193 RLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLY 247 (289)
T ss_pred HHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEE
Confidence 4566677777788765443 2332 245667899999999999999999984
No 44
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=68.53 E-value=5.2 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=27.0
Q ss_pred cccchhhhhhhhhHHHhhhheeeeccceee-eeeccccccccCCCccccee
Q 032869 75 GIHGGAIAAFSERMAIACARTVVAEDKEIF-LGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~~~~~~~~~~~~-T~dl~v~yl~pa~~g~~~~~ 124 (131)
++||..+++++..+.. ........... ...-+++|++|++.||.++.
T Consensus 52 ia~G~~~~a~~~~~~~---~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~ 99 (140)
T cd03446 52 IAHGLLTLSIATGLLQ---RLGVFERTVVAFYGIDNLRFLNPVFIGDTIRA 99 (140)
T ss_pred eeccccHHHHHhhHhh---hcccccceeeEEeccceEEEcCCCCCCCEEEE
Confidence 7888887776543321 11111111111 12238999999999998875
No 45
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=67.13 E-value=22 Score=23.82 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=40.4
Q ss_pred eEeeeec-ceeEEEeecchhhhhhcc------cccchhhhhhhhhHHH-hhhheee----eccceeeeeeccccccccCC
Q 032869 50 KVHKIQR-GRLICHLSVKPAILNFFG------GIHGGAIAAFSERMAI-ACARTVV----AEDKEIFLGELGISYLSAAP 117 (131)
Q Consensus 50 ~~~~~~~-g~~~~~l~v~~~~~N~~G------~lHGG~iatL~D~a~g-~a~~~~~----~~~~~~~T~dl~v~yl~pa~ 117 (131)
++..+++ ++++++..+++++--..| .+=|=++.-.+=.+++ ++..... .........--++.|.+|++
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 4666777 889999988887654433 3333333222222222 2221110 11123333445899999999
Q ss_pred Ccccce
Q 032869 118 HNVSSF 123 (131)
Q Consensus 118 ~g~~~~ 123 (131)
.|+.+.
T Consensus 91 pgd~l~ 96 (131)
T cd00493 91 PGDTLT 96 (131)
T ss_pred CCCEEE
Confidence 998654
No 46
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=65.32 E-value=5.2 Score=28.86 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=30.3
Q ss_pred cccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccceee
Q 032869 75 GIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFHF 125 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~~ 125 (131)
++||-.+++++.....-.... ............+++|++|+..||.++.-
T Consensus 58 Ia~G~~t~sl~~~l~~~~~~~-~~~~~~~~~g~~~~rF~~PV~~GDtl~~~ 107 (149)
T cd03450 58 IAHGFLTLSLLPALTPQLFRV-EGVKMGVNYGLDKVRFPAPVPVGSRVRGR 107 (149)
T ss_pred EECHHHHHHHHHHHHHhcccC-CCceEEEEeeccEEEeCcceeCCcEEEEE
Confidence 688888888776554332110 01111122235589999999999998753
No 47
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=64.27 E-value=6.1 Score=30.65 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=28.5
Q ss_pred ccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccc
Q 032869 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSS 122 (131)
Q Consensus 74 G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~ 122 (131)
+.++||.+++.+=.++ ..+. +.+.. -.+++++|++|+..+..|
T Consensus 21 ~~~fGG~~~Aqal~Aa---~~tv-~~~~~--~~S~h~~Fl~~~~~~~pv 63 (271)
T TIGR00189 21 NRVFGGQVVGQALAAA---SKTV-PEEFI--PHSLHSYFVRAGDPKKPI 63 (271)
T ss_pred CceEccHHHHHHHHHH---HhcC-CCCCC--cceeEEEecCCCCCCCCE
Confidence 5899999998753333 3332 22332 247999999999887543
No 48
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=63.81 E-value=7.2 Score=26.75 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=29.6
Q ss_pred cccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 75 GIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
++||-.+++++..+..-. . +....+ .+++++|++|+..||.++.
T Consensus 46 i~~G~~~~~~~~~~~~~~---~-~~~~~i--~~~~~rf~~Pv~~Gdtl~~ 89 (127)
T cd03453 46 IAHGMLTMGLLGRLVTDW---V-GDPGRV--VSFGVRFTKPVPVPDTLTC 89 (127)
T ss_pred EecHHHHHHHHHHHHHHH---c-CCccce--EEEEEEECCcCcCCCEEEE
Confidence 789988888874433221 1 112222 4778999999999998864
No 49
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=58.27 E-value=9.7 Score=25.57 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=37.0
Q ss_pred cccchhhhhhhhhHHHhhhheeeec----cceeeeeeccccccccCCCcccce
Q 032869 75 GIHGGAIAAFSERMAIACARTVVAE----DKEIFLGELGISYLSAAPHNVSSF 123 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~~~~~~~----~~~~~T~dl~v~yl~pa~~g~~~~ 123 (131)
.+|=.+++-+.|......+....+. ....+++|-++.|.+|.+..+|++
T Consensus 16 ~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l 68 (104)
T cd03444 16 RLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLL 68 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEE
Confidence 5777889999999886555443221 235678999999999999888876
No 50
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=57.91 E-value=8.6 Score=26.68 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=29.8
Q ss_pred ccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 74 G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
=++||-.+++++..+..-.. .++....-..++++|.+|+..||.+.-
T Consensus 45 ~iahG~~t~a~~~~~~~~~~----~~~~~~~~~~~~~rF~~PV~~gDtl~~ 91 (122)
T cd03448 45 PILHGLCTYGFAARAVLEAF----ADGDPARFKAIKVRFSSPVFPGETLRT 91 (122)
T ss_pred ceehhHHHHHHHHHHHHHHh----cCCCcceeEEEEEEEcCCccCCCEEEE
Confidence 46899888887754432111 111122224569999999999998864
No 51
>COG5496 Predicted thioesterase [General function prediction only]
Probab=57.86 E-value=12 Score=26.84 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=43.4
Q ss_pred hhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccc
Q 032869 70 LNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSS 122 (131)
Q Consensus 70 ~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~ 122 (131)
......+--+++..+.+.++.-++...++.+...+-.+.+++.+.|.+.|..|
T Consensus 25 ~~~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V 77 (130)
T COG5496 25 SGMLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTV 77 (130)
T ss_pred CCccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeE
Confidence 33456677788999999999999888877776666679999999999999876
No 52
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=50.96 E-value=11 Score=26.11 Aligned_cols=46 Identities=2% Similarity=-0.098 Sum_probs=26.1
Q ss_pred ccccchhhhhhhhhHHHhhhheeeeccceeeeee-ccccccccCCCccccee
Q 032869 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGE-LGISYLSAAPHNVSSFH 124 (131)
Q Consensus 74 G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~d-l~v~yl~pa~~g~~~~~ 124 (131)
-++||..+.+++-. ...... . ........ .+++|.+|+..||.+.-
T Consensus 54 ~ia~G~l~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~f~~pv~~GDtl~~ 100 (146)
T cd03451 54 RLVNSLFTLSLALG---LSVNDT-S-LTAVANLGYDEVRFPAPVFHGDTLYA 100 (146)
T ss_pred ccccHHhHHHHHhh---heehhc-c-ccceeccCccEEEecCCCCCCCEEEE
Confidence 37788887766521 111111 1 11111122 38999999999998864
No 53
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=50.64 E-value=13 Score=26.24 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=27.8
Q ss_pred cccchhhhhhhhhHHHhhhheeeeccceee-eeeccccccccCCCccccee
Q 032869 75 GIHGGAIAAFSERMAIACARTVVAEDKEIF-LGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~~~~~~~~~~~~-T~dl~v~yl~pa~~g~~~~~ 124 (131)
++||..+++++..... . .. ++..+. ...-+++|++|++.||.+..
T Consensus 52 ia~G~l~~s~~~~l~~---~-~~-~~~~~~~~g~~~~rf~~PV~~GDtl~~ 97 (142)
T cd03452 52 VAHGYFVLSAAAGLFV---D-PA-PGPVLANYGLENLRFLEPVYPGDTIQV 97 (142)
T ss_pred eecHHHHHHHHhhhCc---c-CC-cccEEEEeccceEEECCCCCCCCEEEE
Confidence 7888888887765321 1 11 111111 11349999999999998864
No 54
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=48.06 E-value=18 Score=26.17 Aligned_cols=48 Identities=10% Similarity=-0.063 Sum_probs=27.4
Q ss_pred cccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccceee
Q 032869 75 GIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFHF 125 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~~ 125 (131)
++||-...+++= ++.......+.......--+++|.+|++.||.++.-
T Consensus 69 iahG~~t~a~~~---~~~~~~~~~~~~~~~~g~~~vRF~~PV~~Gdtl~~~ 116 (159)
T COG2030 69 IAHGMLTLALAM---GLVVAALGDPSVGANLGGDEVRFVKPVFPGDTLRAR 116 (159)
T ss_pred ehhHHHHHHHHH---HHHHHhccCcceeeeccccceEecCCCCCCCEEEEE
Confidence 667766665542 222222111111122335589999999999998764
No 55
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=46.87 E-value=21 Score=24.66 Aligned_cols=17 Identities=0% Similarity=-0.195 Sum_probs=14.9
Q ss_pred ccccccccCCCccccee
Q 032869 108 LGISYLSAAPHNVSSFH 124 (131)
Q Consensus 108 l~v~yl~pa~~g~~~~~ 124 (131)
.+++|.+|++.||.++-
T Consensus 81 ~~~~f~~pv~~Gd~l~~ 97 (140)
T cd03454 81 DELRWPRPVRPGDTLSV 97 (140)
T ss_pred eeeEeCCCCCCCCEEEE
Confidence 48999999999998864
No 56
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=45.57 E-value=73 Score=21.92 Aligned_cols=74 Identities=9% Similarity=0.087 Sum_probs=37.8
Q ss_pred eEeeee-cceeEEEeecchhhhhhc------ccccchhhh-hhhhhHHHhhhheee---eccceeeeee-ccccccccCC
Q 032869 50 KVHKIQ-RGRLICHLSVKPAILNFF------GGIHGGAIA-AFSERMAIACARTVV---AEDKEIFLGE-LGISYLSAAP 117 (131)
Q Consensus 50 ~~~~~~-~g~~~~~l~v~~~~~N~~------G~lHGG~ia-tL~D~a~g~a~~~~~---~~~~~~~T~d-l~v~yl~pa~ 117 (131)
++.+++ +++++.+..+++++-=.. ..+=|=++. +++-.++.++..... .......... -++.|.+|++
T Consensus 20 ~i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~ 99 (140)
T TIGR01750 20 RILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVV 99 (140)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccC
Confidence 355666 468888888888753222 223332222 222222222211111 1112222334 3899999999
Q ss_pred Ccccce
Q 032869 118 HNVSSF 123 (131)
Q Consensus 118 ~g~~~~ 123 (131)
.|+.+.
T Consensus 100 pGd~l~ 105 (140)
T TIGR01750 100 PGDQLI 105 (140)
T ss_pred CCCEEE
Confidence 999864
No 57
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=43.43 E-value=25 Score=27.90 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=37.8
Q ss_pred eeEeeeecceeEEEeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccc
Q 032869 49 IKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSS 122 (131)
Q Consensus 49 i~~~~~~~g~~~~~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~ 122 (131)
++++.++++.-+..-. + .....+.||.+++.+=.| |..+. ++++. ..++++.|++|+..+..|
T Consensus 12 l~l~~~~~~~f~g~~~--~---~~~r~~fGGqv~AQal~A---A~~tv-~~~~~--~hSlh~~Fl~pg~~~~pi 74 (286)
T PRK10526 12 LNLEKIEEGLFRGQSE--D---LGLRQVFGGQVVGQALYA---AKETV-PEERL--VHSFHSYFLRPGDSQKPI 74 (286)
T ss_pred cCcEEccCCeEECcCC--C---CCCCceechHHHHHHHHH---HHhcC-CCCCC--ceEEEEEcCCCCCCCCCE
Confidence 4555666665443321 1 235679999998875333 33332 33332 258999999999887643
No 58
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=41.39 E-value=26 Score=29.95 Aligned_cols=45 Identities=7% Similarity=-0.101 Sum_probs=29.9
Q ss_pred cccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCccccee
Q 032869 75 GIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
++||-.+++++..+.+. . .+ +.+....+.+++|.+|+..||.++.
T Consensus 60 IahG~l~~s~~~~l~~~---~-~~-g~~~~~~~~~~rF~~PV~~GDtl~~ 104 (466)
T PRK08190 60 VAHGMWGGALISAVLGT---R-LP-GPGTIYLGQSLRFRRPVRIGDTLTV 104 (466)
T ss_pred eeCHHHHHHHHHHHHhh---h-CC-CcceEEEEEEEEEeCCcCCCCEEEE
Confidence 78998888876433221 1 11 2223345679999999999999874
No 59
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=39.98 E-value=27 Score=27.71 Aligned_cols=50 Identities=8% Similarity=-0.118 Sum_probs=34.9
Q ss_pred cccchhhhhhhhhHH-Hhhhheeee----ccceeeeeeccccccccCCCccccee
Q 032869 75 GIHGGAIAAFSERMA-IACARTVVA----EDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 75 ~lHGG~iatL~D~a~-g~a~~~~~~----~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
.+|=-+++-+.|.-. ..+++.+.. ....++++|-++.|.+|.+.++|++-
T Consensus 193 ~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~ 247 (286)
T PRK10526 193 RVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLY 247 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEE
Confidence 577778887777443 344433321 13345789999999999999999875
No 60
>PLN02864 enoyl-CoA hydratase
Probab=31.20 E-value=39 Score=27.35 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=35.5
Q ss_pred eEEEeecchhhhhh---------cccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCCcccce
Q 032869 59 LICHLSVKPAILNF---------FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNVSSF 123 (131)
Q Consensus 59 ~~~~l~v~~~~~N~---------~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~g~~~~ 123 (131)
..++-..+|-|.++ .=++||=+.++++-.+..-... ...... ..+++++|.+|+..||.++
T Consensus 204 a~lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~~~~~~--~~~~~~--~~~~~~rF~~PV~pGdtl~ 273 (310)
T PLN02864 204 YRLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVIKCFC--NGDPTA--VKTISGRFLLHVYPGETLV 273 (310)
T ss_pred HHhhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHHHhhhc--CCCCce--EEEEEEEEcCCccCCCEEE
Confidence 34445556656552 1368997777665433211111 111111 2468999999999999986
No 61
>PLN02868 acyl-CoA thioesterase family protein
Probab=30.92 E-value=39 Score=28.11 Aligned_cols=50 Identities=6% Similarity=-0.019 Sum_probs=35.4
Q ss_pred cccchhhhhhhhhHHHhhh-heeeeccc--eeeeeeccccccccCCCccccee
Q 032869 75 GIHGGAIAAFSERMAIACA-RTVVAEDK--EIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~-~~~~~~~~--~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
.+|=.+++.+.|..+...+ ..+..... ..+++|-++.|.+|.+.++|++.
T Consensus 326 ~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~ 378 (413)
T PLN02868 326 ALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLF 378 (413)
T ss_pred HHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEE
Confidence 5677888999997664333 22222222 25678999999999999999875
No 62
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=29.34 E-value=35 Score=22.13 Aligned_cols=22 Identities=0% Similarity=-0.037 Sum_probs=18.0
Q ss_pred eeeccccccccCCCcccceeee
Q 032869 105 LGELGISYLSAAPHNVSSFHFE 126 (131)
Q Consensus 105 T~dl~v~yl~pa~~g~~~~~~~ 126 (131)
+.+.++.++.+++.||||+=+.
T Consensus 25 ~~~v~l~lv~~~~vGD~VLVH~ 46 (76)
T TIGR00074 25 KRDVSLDLVGEVKVGDYVLVHV 46 (76)
T ss_pred EEEEEEEeeCCCCCCCEEEEec
Confidence 4577899999999999997543
No 63
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=25.59 E-value=44 Score=21.05 Aligned_cols=21 Identities=5% Similarity=0.009 Sum_probs=15.8
Q ss_pred eeeccccccccCCCcccceee
Q 032869 105 LGELGISYLSAAPHNVSSFHF 125 (131)
Q Consensus 105 T~dl~v~yl~pa~~g~~~~~~ 125 (131)
..+.++.++.+++.||||+-+
T Consensus 27 ~~~V~~~lv~~v~~Gd~VLVH 47 (68)
T PF01455_consen 27 RREVSLALVPDVKVGDYVLVH 47 (68)
T ss_dssp EEEEEGTTCTSB-TT-EEEEE
T ss_pred EEEEEEEEeCCCCCCCEEEEe
Confidence 457899999999999999744
No 64
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=25.02 E-value=36 Score=24.72 Aligned_cols=19 Identities=0% Similarity=-0.067 Sum_probs=16.1
Q ss_pred eeccccccccCCCccccee
Q 032869 106 GELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 106 ~dl~v~yl~pa~~g~~~~~ 124 (131)
.+.+++|++|++.||.++.
T Consensus 87 ~~q~~~f~~PV~~GDtL~~ 105 (159)
T PRK13692 87 VDQVLKFEKPIVAGDKLYC 105 (159)
T ss_pred eeeEEEEeCCccCCCEEEE
Confidence 3468999999999999875
No 65
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=23.74 E-value=2.5e+02 Score=19.25 Aligned_cols=62 Identities=8% Similarity=0.039 Sum_probs=28.7
Q ss_pred eEEEeecchhhhh------hcccccchhhh-hhhhhHHHhhhheee--ecc----ceeeeeeccccccccCCCcc
Q 032869 59 LICHLSVKPAILN------FFGGIHGGAIA-AFSERMAIACARTVV--AED----KEIFLGELGISYLSAAPHNV 120 (131)
Q Consensus 59 ~~~~l~v~~~~~N------~~G~lHGG~ia-tL~D~a~g~a~~~~~--~~~----~~~~T~dl~v~yl~pa~~g~ 120 (131)
++.+..+++++-= ....+=|-++. +++-.+..++..... ..+ ......--++.|++++.+|+
T Consensus 27 ~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~ 101 (138)
T PF07977_consen 27 IVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGD 101 (138)
T ss_dssp EEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE
T ss_pred EEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCC
Confidence 7888887776442 23445554444 344444444433311 111 12223345899999999999
No 66
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=21.83 E-value=59 Score=25.43 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=36.7
Q ss_pred EeecchhhhhhcccccchhhhhhhhhHHHhhhheeeeccceeeeeeccccccccCCC
Q 032869 62 HLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPH 118 (131)
Q Consensus 62 ~l~v~~~~~N~~G~lHGG~iatL~D~a~g~a~~~~~~~~~~~~T~dl~v~yl~pa~~ 118 (131)
-...+|++.=..|.-|||-.--.+|.++... ....|.++|+.+.=+.|+..
T Consensus 65 lw~~~P~lvIE~Gs~~GGSal~fA~~m~s~G------q~~kvl~vdIdi~~~~p~a~ 115 (237)
T COG3510 65 LWELQPSLVIEFGSRHGGSALFFANMMISIG------QPFKVLGVDIDIKPLDPAAR 115 (237)
T ss_pred HHhcCCceeEeeccccCchhhhhhHhHHhcC------CCceEEEEecccCcCChhhh
Confidence 3445666667789999999988888555443 34567788888888766654
No 67
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=21.62 E-value=50 Score=23.72 Aligned_cols=49 Identities=12% Similarity=-0.042 Sum_probs=30.9
Q ss_pred cccchhhhhhhhhHHHhhhh-eee--eccceeeeeeccccccccCCCccccee
Q 032869 75 GIHGGAIAAFSERMAIACAR-TVV--AEDKEIFLGELGISYLSAAPHNVSSFH 124 (131)
Q Consensus 75 ~lHGG~iatL~D~a~g~a~~-~~~--~~~~~~~T~dl~v~yl~pa~~g~~~~~ 124 (131)
.+|-=+++-+.|...-..+. .+. .....+ |+|=++-|.||.+.++|++=
T Consensus 45 ~~h~~~laY~SD~~~L~tal~~H~~~~~~~~v-SlDHs~wFHrpfr~ddWlLY 96 (131)
T PF02551_consen 45 RIHSCALAYASDFTLLDTALQPHGFGFPKFQV-SLDHSMWFHRPFRADDWLLY 96 (131)
T ss_dssp CCCCCHHHHHCCCCCGGGGGCCGCCCCCCEEE-EEEEEEEE-S--BTTS-EEE
T ss_pred hHhHHHHHHHhHHhHHHhhhccccccccccEE-ecceeEEEcCCCCCCCCEEE
Confidence 56777788888877654443 332 122334 89999999999999999874
Done!