BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032870
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 166 bits (420), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 89/115 (77%)
Query: 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
PP V LETSMG +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP LDG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGK 125
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 166 bits (419), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 89/115 (77%)
Query: 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
PP V LETSMG +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP LDG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGK 125
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 166 bits (419), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 89/115 (77%)
Query: 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
PP V LETSMG +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP LDG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGK 125
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 79/111 (71%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
+T+ T++G F VELY+ HSP+TC NF L G+Y+N+ FHR+I +F++Q
Sbjct: 41 ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDEI ELKHTGAGILSM+N GPNTN SQFFITLAP HLDG
Sbjct: 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDG 151
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 66/115 (57%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXX 65
DG VTL T +G +E++ + +P+TC NF L YYN FHR IK F+VQ
Sbjct: 4 DGGMSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPT 63
Query: 66 XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
SI+G FEDE LKH G++SMAN GPNTNGSQFFIT HLD
Sbjct: 64 GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLD 118
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 69/110 (62%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
V L T+ G +EL+ +P+TC NF L ++ YY+ + FHR I++F++Q
Sbjct: 22 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
S +G F+DE +P L HTG GILSMAN+GPN+N SQFFIT ++LD
Sbjct: 82 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLD 131
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 64/110 (58%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
VTL T +G +E++ + +P+TC NF L YYN FHR IK F+VQ
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
SI+G FEDE LKH G++SMAN GPNTNGSQFFIT HLD
Sbjct: 63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLD 112
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 66/113 (58%)
Query: 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
P + T+MG + L+YK +T +NF+ S GYYNN FHR+IK F+VQ
Sbjct: 5 PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
SI+G+ FEDE L H+ ++SMAN GPNTNGSQFFIT P LD
Sbjct: 65 GTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLD 117
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
V + T+ G EL+ P+ C+NF LS GYY N+ FH+ IK FI+Q
Sbjct: 19 VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKG 78
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAG----PNTNGSQFFITLAPASHLDG 121
SIYG F+DEI PELK+ GILSMA+ G PNTNGSQFFIT + L+G
Sbjct: 79 GESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNG 133
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 6 DGPPEVT----LETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQX 61
+GP V+ + TSMG +L+ P+T NF SR GYYN FHRIIK F++Q
Sbjct: 15 EGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQT 74
Query: 62 XXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
SI+G FEDE L+H LSMANAG NTNGSQFFIT+ P LD
Sbjct: 75 GDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLD 133
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 8 PP---EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXX 64
PP +V L+T+ G +EL+ K +P+ CRNF +L YY+N+ FHR++ FIVQ
Sbjct: 21 PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDP 80
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
SIYG F+DE L+ G+++MANAG + NGSQFF TL A L+
Sbjct: 81 TGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELN 136
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G + L+ K P+T NF L+ +GY Y SKFHR+IKDF++Q
Sbjct: 26 DKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGT 85
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG F DE +LKH G G +SMANAGP+TNGSQFFITL + LDG
Sbjct: 86 GGVSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGK 137
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 65/117 (55%), Gaps = 5/117 (4%)
Query: 9 PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXX-X 64
P T ET +G L+ K P+T +NF EL +R Y S FHRII +F++Q
Sbjct: 13 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFT 72
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F DE KH GILSMANAGPNTNGSQFFIT A S LDG
Sbjct: 73 RGNGTGGRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDG 128
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXX-XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 NFTHCNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 12 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 64
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 65 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 123
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 124
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 32 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 84
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 85 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 143
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 12 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 64
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 65 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 123
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 25 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 84
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 85 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 132
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 NFTHHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G + L+ P+T NF L+ +GY Y S FHR+IKDF++Q
Sbjct: 18 DKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGT 77
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG F DE +LKH G G +SMANAGP+TNGSQFFITL + LDG
Sbjct: 78 GGMSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGK 129
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 12 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 64
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 65 DFTHHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 123
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GIL+MANAGPNTNGSQFFI A LDG
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDG 124
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F+ Q
Sbjct: 17 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 69
Query: 63 X-XXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 70 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 128
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FH+II F+ Q
Sbjct: 13 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGG 65
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILSMANAGPNTNGSQFFI A LDG
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
+G + L+ K P+T NF EL+++ Y SKFHR+I DF++Q
Sbjct: 20 IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGR 79
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG F DE +LKH GAG LSMANAG +TNGSQFFIT LDG
Sbjct: 80 SIYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGR 128
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G + L+ K P+T NF L+ +G+ Y +SKFHR+IKDF++Q
Sbjct: 23 DEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGT 82
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG F DE +LKH G G +SMANAG +TNGSQFFIT + LDG
Sbjct: 83 GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 134
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G T+EL+ PRT NF L +G+ + NS FHR+I DF+ Q
Sbjct: 20 LGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQ 79
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
SIYG FEDE ++KHTG G+LSMAN G NTN SQF ITL A HLD
Sbjct: 80 SIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLD 126
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G + L+ K P+T NF L+ +G+ Y +SKFHR+IKDF++Q
Sbjct: 23 DEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGT 82
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG F DE +LKH G G +SMANAG +TNGSQFFIT + LDG
Sbjct: 83 GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 134
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G L+ K P+T NF L+ +G+ Y NSKFHR+IKDF++Q
Sbjct: 26 DEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGT 85
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG F DE +LKH G G +SMANAG +TNGSQFFIT + LDG
Sbjct: 86 GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 137
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Query: 15 TSMGSFTVELYYKHSPRTCRNFAELS------RRG---YYNNSKFHRIIKDFIVQXXX-X 64
++ G EL+ +PRTC NF L RG +Y NS FHRII F+ Q
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F DE +KH G+LSMANAGPNTN SQFFITL P LDG
Sbjct: 75 NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDG 130
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
+ +G L+ K P+T NF L+ +G+ Y NSKFHR+IKDF++Q
Sbjct: 16 DEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGT 75
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG F DE +LKH G G +SMANAG +TNGSQFFIT + LDG
Sbjct: 76 GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 127
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXXS 73
G +LY + P+T +NF EL+ + G+ Y +S FHR+I F++Q S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 74 IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
IYG F DE ++KHT G+LSMANAG NTNGSQFFIT P S LDG
Sbjct: 77 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 123
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXXS 73
G +LY + P+T +NF EL+ + G+ Y +S FHR+I F++Q S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 74 IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
IYG F DE ++KHT G+LSMANAG NTNGSQFFIT P S LDG
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 124
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
DG P +G + EL+ P+T NF LS +G+ Y S FHRII F Q
Sbjct: 12 DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGG 64
Query: 63 XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG FEDE LKHTG GILS ANAGPNTNGSQFFI A LDG
Sbjct: 65 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDG 123
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 18/134 (13%)
Query: 10 EVTLETSM-GSFTVELYYKHSPRTCRNFAELS-----------RRGYYNNSKFHRIIKDF 57
+VT++ ++ G +ELY +PRTC NF L + +Y S FHR+IK+F
Sbjct: 12 DVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNF 71
Query: 58 IVQXXX-XXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPA 116
++Q SIYG +F+DE + +KH ++SMAN GPNTNGSQFFIT PA
Sbjct: 72 MIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPA 130
Query: 117 SHLDGNVNNIIVLL 130
HL NNI V+
Sbjct: 131 PHL----NNIHVVF 140
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 15 TSMGSFTVELYYKHSPRTCRNFAELS------RRG---YYNNSKFHRIIKDFIVQXXX-X 64
++ G EL+ +PRTC NF L RG +Y NS FHRII F+ Q
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F DE +KH G+LSMANAGPNTN SQF ITL P LDG
Sbjct: 75 NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDG 130
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQXXXXXX-X 67
+G F EL+ P+T NF + Y Y N+ FHR+IK+F++Q
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F+DE ++KH G+LSMAN+GPNTNG QFFIT LDG
Sbjct: 133 GSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDG 185
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 69/126 (54%), Gaps = 15/126 (11%)
Query: 9 PEVTLET---------SMGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKD 56
PEVT + +G T+ L+ K +P T NF +L G+ Y +S FHR+I++
Sbjct: 8 PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQN 67
Query: 57 FIVQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAP 115
F++Q SIYG F DE +KH G LSMANAGPNTNGSQFFIT AP
Sbjct: 68 FMIQGGDFTNFDGTGGKSIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAP 125
Query: 116 ASHLDG 121
LDG
Sbjct: 126 TPWLDG 131
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 69/126 (54%), Gaps = 15/126 (11%)
Query: 9 PEVTLET---------SMGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKD 56
PEVT + +G T+ L+ K +P T NF +L G+ Y +S FHR+I++
Sbjct: 8 PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQN 67
Query: 57 FIVQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAP 115
F++Q SIYG F DE +KH G LSMANAGPNTNGSQFFIT AP
Sbjct: 68 FMIQGGDFTNFDGTGGKSIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAP 125
Query: 116 ASHLDG 121
LDG
Sbjct: 126 TPWLDG 131
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXX--XXXXX 67
+V L TS+G VEL+ + P CRNF +L GYY N+ FHR++KDFIVQ
Sbjct: 23 KVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGR 82
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPN--------------TNGSQFFITL 113
+ G F+ E P LK G++ +AN G + TNG+QFFITL
Sbjct: 83 GGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITL 142
Query: 114 APASHLD 120
A A L+
Sbjct: 143 ARADVLN 149
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXXS 73
G +EL PRT NF L RG+ Y+N FHR+I F+ Q S
Sbjct: 25 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKS 84
Query: 74 IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
IYG F+DE +L+H G G+LSMAN+GPNTNGSQFFI LDG
Sbjct: 85 IYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDG 131
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
+G+ +L+ P+T NF L +G+ Y S FHR+I DF++Q
Sbjct: 15 LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F DE +LKH G+LSMANAGPNTNGSQFFIT S LDG
Sbjct: 75 SIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDG 122
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 66/131 (50%), Gaps = 18/131 (13%)
Query: 9 PEVTLETSM-----GSFTVELYYKHSPRTCRNFAEL-------SRRG---YYNNSKFHRI 53
P+V + S+ G +ELY P+T NF L R G +Y +S FHR+
Sbjct: 8 PKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRV 67
Query: 54 IKDFIVQXXX-XXXXXXXXXSIYGHVFEDEI--KPELKHTGAGILSMANAGPNTNGSQFF 110
I +F++Q SIYG F DE +HTG G LSMANAGPNTNGSQFF
Sbjct: 68 IPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFF 127
Query: 111 ITLAPASHLDG 121
I A LDG
Sbjct: 128 ICTAATPWLDG 138
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXX-XXXXXX 69
E S+G ++L P+T +NF L R Y S FHRII F+VQ
Sbjct: 38 EESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGT 97
Query: 70 XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
SIYG F DE ELKHT GILSMAN G +TNGSQFFITL LD
Sbjct: 98 GGRSIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLD 147
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXXX-XX 65
G EL+ P+TC NF L +G +Y + FHR++KDF+VQ
Sbjct: 41 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 100
Query: 66 XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG FEDE +KH A +LSMAN G +TNGSQFFIT P HLDG+
Sbjct: 101 GNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGH 156
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 18 GSFTVELYYKHSPRTCRNFAEL-------SRRG---YYNNSKFHRIIKDFIVQXXX-XXX 66
G +ELY P+T NF L + G ++ SKFHRII +F++Q
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 67 XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F DE E KHTG G+LSMANAGPNTNGSQFF+ LDG
Sbjct: 78 NGTGGESIYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDG 131
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXXX-X 64
+G +EL+ P+T NF L +G ++ FHRIIK F++Q
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG FEDE KH G+LSMANAG NTNGSQFFIT P HLDG
Sbjct: 89 NQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGK 145
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS-----------RRGYYNNSKFHRIIKDFIVQXXX-X 64
+G +L+ P+TC+NF L ++ Y S FHR++K+F++Q
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 65 XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F+DE LKH A +LSMAN G +TNGSQFFIT PA HLDG
Sbjct: 93 EGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDG 148
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
+G +EL P+T NF L +G+ Y S FHR+I F+ Q
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F DE LKH G G+LSMANAGPNTNGSQFFI LDG
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
+G +EL P+T NF L +G+ Y S FHR+I F+ Q
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F DE LKH G G+LSMANAGPNTNGSQFFI LDG
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
+G +EL P+T NF L +G+ Y S FHR+I F+ Q
Sbjct: 16 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 75
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F DE LKH G G+LSMANAGPNTNGSQFFI LDG
Sbjct: 76 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
+G +EL P+T NF L +G+ Y S FHR+I F+ Q
Sbjct: 18 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 77
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F DE LKH G G+LSMANAGPNTNGSQFFI LDG
Sbjct: 78 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 125
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXXX-XX 65
G EL+ P+TC NF L +G +Y + FHR++KDF+VQ
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83
Query: 66 XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG FEDE +KH +LSMAN G +TNGSQFFIT P HLDG+
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGH 139
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 17 MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
+G +LY P+T NF L +G+ Y S FHR+I DF++Q
Sbjct: 15 IGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG F DE + H G+LSMANAGPNTNGSQFFIT P LDG
Sbjct: 75 SIYGGKFPDE-NFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGK 123
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Query: 17 MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
+G + L+ P+T NF +L+ G+ Y S FHR+I++F++Q
Sbjct: 19 VGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGK 78
Query: 73 SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIYG F+DE ++KH G +SMANAGPN+NGSQFF+T AP LDG
Sbjct: 79 SIYGTRFDDE-NLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDG 125
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 18 GSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXXX-XX 65
G EL+ P+TC NF L +G +Y + FHR++KDF+VQ
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSE 83
Query: 66 XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG FEDE +KH +LSMAN G +TNGSQFFIT P HLDG+
Sbjct: 84 GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGH 139
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 17 MGSFTVELYYKHSPRTCRNF-----AELSRRGY---YNNSKFHRIIKDFIVQXXX-XXXX 67
+G +EL+ P+T NF E + G Y S FHR+IKDF++Q
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
SIY F DE +L+H+ G+LSMAN+GP+TNG QFFIT + LDG
Sbjct: 84 GTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDG 136
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 15 TSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQX--------XXXXX 66
T+ GS +EL+ +PR C +F L Y++++ FHR I++F++Q
Sbjct: 13 TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 67 XXXXXXSIYGHV----FEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
SI G FEDE L H G G+LSMAN G ++N S+FFIT HL+
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLN 130
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 30 PRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXXSIYGHVFEDEIKP 85
P T NF L +G+ + S FHRII F+ Q SIYG F+DE
Sbjct: 30 PMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NF 88
Query: 86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
LKHTG G+LSMAN+GPNTNGSQFF+T LDG
Sbjct: 89 ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 124
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 66/122 (54%), Gaps = 10/122 (8%)
Query: 9 PEVTLETSMG---SFTVELYYKHS--PRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQ 60
P+V ++ +G + +++ + P T NF L +G+ + S FHRII F+ Q
Sbjct: 12 PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQ 71
Query: 61 XXX-XXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHL 119
SIYG F+DE LKHTG G+LSMAN+GPNTNGSQFF+T L
Sbjct: 72 GGDFTNHNGTGGKSIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 130
Query: 120 DG 121
DG
Sbjct: 131 DG 132
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRG---------------YYNNSKFHRIIK 55
TL T+ G + L+ H+P+T NF L++ +Y+ + FHR+I+
Sbjct: 26 ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQ 85
Query: 56 DFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAP 115
F++Q + F DE PEL+ +L+MANAGP TNGSQFFIT+
Sbjct: 86 GFMIQGGDPTGTGRGGPG---YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK 142
Query: 116 ASHLD 120
HL+
Sbjct: 143 TPHLN 147
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 14 ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY--------YNNSKFHRIIKDFIVQXXX 63
+T G T+EL+ P T NF L +G Y S FHRII F++Q
Sbjct: 30 QTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGD 89
Query: 64 -XXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGN 122
SIYG F DE H +LSMANAGPNTNGSQFFIT P LDG
Sbjct: 90 FTRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGK 148
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 30 PRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXXSIYGHVFEDEIKP 85
P T NF L +G+ + S FHRII F Q SIYG F+DE
Sbjct: 39 PXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDE-NF 97
Query: 86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
LKHTG G+LS AN+GPNTNGSQFF+T LDG
Sbjct: 98 ILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDG 133
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXX 66
G P V L TS G+ +EL + +P + +NF + G+YNN+ FHR+I F++Q
Sbjct: 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 67 XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
++E L++T I A ++ SQFFI +A + LD
Sbjct: 63 QMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLD 114
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXX 66
G P V L TS G+ +EL + +P + +NF + G+YNN+ FHR+I F++Q
Sbjct: 3 GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 67 XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD 120
++E L++T I A ++ SQFFI +A + LD
Sbjct: 63 QMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLD 114
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
VT T+ G ++ + +P T +NF + R G+YNN+ FHR+I F++Q
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANA-GPNTNGSQFFITLAPASHLD 120
+ ++E LK+T G L+MA P++ +QFFI + L+
Sbjct: 62 KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLN 109
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
VT T+ G ++ + +P T +NF + R G+YNN+ FHR+I F++Q
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANA-GPNTNGSQFFITLAPASHLD 120
+ ++E LK+T G L+MA P++ +QFFI + L+
Sbjct: 62 KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLN 109
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 32/125 (25%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
+ L+T+ G+ T++L+ +P T NF + + G+Y+ + FHR+I F++Q
Sbjct: 2 IKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQ---------- 51
Query: 71 XXSIYGHVFEDEIKPELKHTGAGILSMANAG---------------PNTNGSQFFITLAP 115
G FE +K K T A I + AN G P++ +QFFI +
Sbjct: 52 -----GGGFEPGMKQ--KSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKD 104
Query: 116 ASHLD 120
+ LD
Sbjct: 105 NAFLD 109
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQ 60
V L T+ G +EL +P+T NF ++G+Y+ + FHR+I F++Q
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,888,751
Number of Sequences: 62578
Number of extensions: 133161
Number of successful extensions: 413
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 76
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)