Query 032870
Match_columns 131
No_of_seqs 148 out of 1031
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0881 Cyclophilin type pepti 100.0 1.9E-50 4E-55 266.3 7.8 130 1-130 1-131 (164)
2 KOG0546 HSP90 co-chaperone CPR 100.0 1.8E-49 4E-54 300.0 11.5 129 1-130 1-146 (372)
3 COG0652 PpiB Peptidyl-prolyl c 100.0 5E-47 1.1E-51 262.3 13.3 116 11-130 2-121 (158)
4 cd01928 Cyclophilin_PPIL3_like 100.0 4E-45 8.7E-50 253.7 15.4 122 10-131 2-123 (153)
5 cd01925 cyclophilin_CeCYP16-li 100.0 4.6E-45 1E-49 257.5 15.8 127 4-130 1-127 (171)
6 cd01927 cyclophilin_WD40 cyclo 100.0 4.1E-45 8.9E-50 252.4 14.5 120 12-131 1-120 (148)
7 cd01923 cyclophilin_RING cyclo 100.0 1E-44 2.2E-49 253.1 15.3 122 10-131 1-122 (159)
8 cd01922 cyclophilin_SpCYP2_lik 100.0 1.7E-44 3.6E-49 248.9 14.7 120 12-131 1-120 (146)
9 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.3E-44 2.7E-49 254.1 13.2 125 5-130 36-170 (217)
10 KOG0883 Cyclophilin type, U bo 100.0 6.4E-45 1.4E-49 277.0 9.6 125 6-130 275-399 (518)
11 cd01921 cyclophilin_RRM cyclop 100.0 7.5E-43 1.6E-47 245.2 14.6 120 12-131 1-128 (166)
12 KOG0885 Peptidyl-prolyl cis-tr 100.0 1.3E-43 2.7E-48 268.4 11.2 128 3-130 7-134 (439)
13 KOG0879 U-snRNP-associated cyc 100.0 1E-43 2.2E-48 236.8 8.9 126 4-130 6-145 (177)
14 KOG0882 Cyclophilin-related pe 100.0 4.3E-43 9.3E-48 271.0 9.2 123 8-130 404-526 (558)
15 KOG0884 Similar to cyclophilin 100.0 1.5E-42 3.3E-47 227.7 9.0 121 10-130 2-122 (161)
16 PLN03149 peptidyl-prolyl isome 100.0 1.3E-40 2.8E-45 237.4 15.9 126 4-130 14-153 (186)
17 PRK10903 peptidyl-prolyl cis-t 100.0 2.3E-40 4.9E-45 236.8 15.4 124 5-131 25-154 (190)
18 PTZ00060 cyclophilin; Provisio 100.0 6.5E-40 1.4E-44 233.4 15.6 127 4-131 11-152 (183)
19 cd01926 cyclophilin_ABH_like c 100.0 1.3E-39 2.7E-44 228.4 15.6 122 9-131 1-136 (164)
20 cd01920 cyclophilin_EcCYP_like 100.0 1E-39 2.2E-44 227.0 13.8 116 13-131 2-123 (155)
21 PTZ00221 cyclophilin; Provisio 100.0 2E-39 4.3E-44 238.9 15.8 124 4-131 48-188 (249)
22 PRK10791 peptidyl-prolyl cis-t 100.0 2E-39 4.4E-44 227.3 14.4 118 11-131 2-128 (164)
23 cd01924 cyclophilin_TLP40_like 100.0 5.7E-39 1.2E-43 227.2 13.6 117 14-130 3-153 (176)
24 cd00317 cyclophilin cyclophili 100.0 2.5E-38 5.5E-43 217.6 14.6 118 12-130 1-118 (146)
25 KOG0111 Cyclophilin-type pepti 100.0 5.4E-39 1.2E-43 229.7 6.8 123 7-130 135-266 (298)
26 PF00160 Pro_isomerase: Cyclop 100.0 7.5E-36 1.6E-40 207.0 15.3 120 10-130 1-126 (155)
27 KOG0415 Predicted peptidyl pro 100.0 4.4E-35 9.6E-40 221.3 11.0 121 10-130 2-130 (479)
28 KOG0865 Cyclophilin type pepti 100.0 3.4E-31 7.3E-36 184.8 7.3 123 7-130 2-136 (167)
29 KOG0882 Cyclophilin-related pe 97.8 3.3E-05 7.2E-10 61.4 4.5 129 1-130 91-230 (558)
30 PRK00969 hypothetical protein; 96.0 0.13 2.8E-06 42.0 10.5 74 17-100 377-452 (508)
31 TIGR03268 methan_mark_3 putati 96.0 0.092 2E-06 42.7 9.7 91 19-130 202-292 (503)
32 PRK00969 hypothetical protein; 95.9 0.1 2.3E-06 42.5 9.6 91 19-130 205-295 (508)
33 TIGR03268 methan_mark_3 putati 95.9 0.17 3.8E-06 41.2 10.6 74 17-100 374-449 (503)
34 COG4070 Predicted peptidyl-pro 90.9 2.2 4.9E-05 34.1 8.3 87 19-130 204-294 (512)
35 PF12903 DUF3830: Protein of u 90.6 0.39 8.4E-06 33.2 3.5 25 16-40 6-30 (147)
36 COG4070 Predicted peptidyl-pro 88.4 1.3 2.8E-05 35.4 5.3 24 18-41 376-399 (512)
37 PHA03001 putative virion core 81.8 5.3 0.00012 26.9 5.1 48 9-56 4-60 (132)
38 PF06138 Chordopox_E11: Chordo 81.4 7.9 0.00017 26.0 5.8 47 10-56 5-61 (130)
39 PF05913 DUF871: Bacterial pro 75.3 3.2 6.9E-05 32.8 3.0 41 89-130 297-337 (357)
40 PF04126 Cyclophil_like: Cyclo 66.6 34 0.00074 22.5 8.9 89 10-130 2-102 (120)
41 PF11314 DUF3117: Protein of u 42.0 15 0.00032 20.5 1.0 24 10-33 18-44 (51)
42 PF02505 MCR_D: Methyl-coenzym 41.4 72 0.0016 22.2 4.4 34 9-44 66-99 (153)
43 PF00708 Acylphosphatase: Acyl 38.9 92 0.002 19.0 4.5 38 14-54 38-75 (91)
44 cd02951 SoxW SoxW family; SoxW 38.5 1E+02 0.0022 19.7 4.8 41 7-47 84-125 (125)
45 PF10882 bPH_5: Bacterial PH d 37.0 48 0.001 20.5 3.0 30 7-42 69-98 (100)
46 PF08710 nsp9: nsp9 replicase; 35.6 25 0.00054 23.1 1.4 22 5-26 48-69 (111)
47 PRK14420 acylphosphatase; Prov 34.0 1.2E+02 0.0025 18.8 4.9 37 14-53 36-72 (91)
48 KOG3073 Protein required for 1 33.7 55 0.0012 24.1 3.0 32 8-40 94-126 (236)
49 PRK14452 acylphosphatase; Prov 32.6 1E+02 0.0022 20.0 3.9 37 14-53 54-90 (107)
50 PRK14426 acylphosphatase; Prov 30.6 1.2E+02 0.0025 18.9 3.9 38 14-53 38-75 (92)
51 PRK14451 acylphosphatase; Prov 30.1 1.1E+02 0.0023 19.0 3.6 28 14-43 37-64 (89)
52 PF10539 Dev_Cell_Death: Devel 29.3 53 0.0011 22.2 2.2 33 19-51 83-115 (130)
53 TIGR03260 met_CoM_red_D methyl 27.5 1.8E+02 0.0039 20.2 4.6 32 10-44 66-97 (150)
54 PRK14442 acylphosphatase; Prov 26.1 1.5E+02 0.0032 18.4 3.8 27 14-42 38-64 (91)
55 PRK14445 acylphosphatase; Prov 25.5 1.2E+02 0.0027 18.7 3.3 28 14-43 38-65 (91)
56 PRK14446 acylphosphatase; Prov 25.4 1.5E+02 0.0033 18.4 3.7 28 14-43 36-63 (88)
57 PRK14436 acylphosphatase; Prov 25.1 1.6E+02 0.0036 18.2 3.9 29 13-43 37-65 (91)
58 PRK14447 acylphosphatase; Prov 23.9 1.5E+02 0.0032 18.6 3.5 28 14-43 38-66 (95)
59 PF12090 Spt20: Spt20 family; 23.9 1.2E+02 0.0025 21.6 3.3 46 9-56 14-82 (182)
60 COG0219 CspR Predicted rRNA me 22.4 1.5E+02 0.0033 20.6 3.6 33 20-55 3-35 (155)
61 PRK14441 acylphosphatase; Prov 22.4 1.6E+02 0.0035 18.3 3.4 28 14-43 39-66 (93)
62 PF11372 DUF3173: Domain of un 21.9 1E+02 0.0022 17.9 2.2 27 27-53 13-46 (59)
63 PRK14421 acylphosphatase; Prov 21.8 2.3E+02 0.0049 18.0 4.2 29 13-43 37-65 (99)
64 PRK14444 acylphosphatase; Prov 21.7 1.7E+02 0.0037 18.2 3.5 37 14-53 38-74 (92)
65 KOG3422 Mitochondrial ribosoma 21.4 1.4E+02 0.0031 22.0 3.3 31 14-44 137-167 (221)
66 PF07873 YabP: YabP family; I 21.2 1.6E+02 0.0035 17.0 3.1 16 8-23 25-40 (66)
67 PRK14440 acylphosphatase; Prov 20.9 1.4E+02 0.003 18.5 2.9 37 14-53 37-73 (90)
68 cd02987 Phd_like_Phd Phosducin 20.7 2.8E+02 0.006 19.3 4.7 37 18-56 84-123 (175)
69 PF13496 DUF4120: Domain of un 20.4 66 0.0014 20.2 1.3 15 17-31 38-52 (95)
70 PRK14438 acylphosphatase; Prov 20.4 1.8E+02 0.004 18.0 3.4 28 14-43 37-64 (91)
No 1
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-50 Score=266.30 Aligned_cols=130 Identities=72% Similarity=1.169 Sum_probs=124.6
Q ss_pred CCCC-CCCCCEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccC
Q 032870 1 MLAS-DDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVF 79 (131)
Q Consensus 1 m~~~-~~~~~~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~ 79 (131)
|+++ ....+.|.|+||.|.|++|||-+.||+||+||.+|+++|||+|..|||++++|+||||||++.|.++.++||..|
T Consensus 1 ~~~~~~~q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF 80 (164)
T KOG0881|consen 1 MIAPPEWQPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKF 80 (164)
T ss_pred CCCCccCCCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchh
Confidence 5553 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 80 EDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 80 ~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
++|.++.|+|..+|.|+|++.+|++++|||||+|++.+||||+|++||||.
T Consensus 81 ~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~ 131 (164)
T KOG0881|consen 81 EDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVC 131 (164)
T ss_pred hhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhh
Confidence 999999999999999999999999999999999999999999999999985
No 2
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-49 Score=299.95 Aligned_cols=129 Identities=49% Similarity=0.781 Sum_probs=122.2
Q ss_pred CCCCCCCCCEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhc--C---------CcCCceeEEEecCcEEEcCCC
Q 032870 1 MLASDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR--G---------YYNNSKFHRIIKDFIVQGGDP 64 (131)
Q Consensus 1 m~~~~~~~~~v~l~ts-----~G~i~ieL~~~~aP~t~~nF~~l~~~--g---------~Y~g~~f~rv~~~~~iq~G~~ 64 (131)
|-++..++|+|+||+| .|||+||||.|.||+||+||+.||++ | .|+|+.||||+++|||||||+
T Consensus 1 M~~~~~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDf 80 (372)
T KOG0546|consen 1 MGMSVRTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDF 80 (372)
T ss_pred CCcccCCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeecccc
Confidence 5666678999999998 68999999999999999999999963 2 499999999999999999999
Q ss_pred C-CCCCCCCcccCccCCCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 65 T-GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 65 ~-~~~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
+ ++|+||++|||..|+||+ +.++|+++++||||+.|||+|+||||||+.+.|||||+|+|||+||
T Consensus 81 s~gnGtGGeSIYG~~FdDEn-F~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI 146 (372)
T KOG0546|consen 81 SEGNGTGGESIYGEKFDDEN-FELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVI 146 (372)
T ss_pred ccCCCCCccccccccccccc-ceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEe
Confidence 8 899999999999999997 8999999999999999999999999999999999999999999998
No 3
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-47 Score=262.33 Aligned_cols=116 Identities=48% Similarity=0.832 Sum_probs=107.1
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCC-CCCCCcccCccCCCCCCCCCcc
Q 032870 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT-GRGGDSIYGHVFEDEIKPELKH 89 (131)
Q Consensus 11 v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~-~~~~~~~~~~~~~~e~~~~l~~ 89 (131)
+.++|+.|+|+||||++.||+||+||++||+.|||+|+.||||+++|||||||+.+. +.+++ ++.|++|+. ...|
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~-~~~~ 77 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENF-ALNG 77 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccccc-cccc
Confidence 689999999999999999999999999999999999999999999999999999966 77777 478999974 3445
Q ss_pred Cc--ccEEEEEeCC-CCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 90 TG--AGILSMANAG-PNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 90 ~~--~G~v~~~~~~-~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
.+ +|+||||+.+ |++++|||||++.+.||||++|+|||+|+
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv 121 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVV 121 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEe
Confidence 54 9999999988 99999999999999999999999999997
No 4
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=4e-45 Score=253.68 Aligned_cols=122 Identities=53% Similarity=0.935 Sum_probs=116.5
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCcc
Q 032870 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH 89 (131)
Q Consensus 10 ~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~ 89 (131)
.|.|+|+.|+|+||||++.||+||+||++||+++||+|+.|||+++++++|+||+.+++.++.++++..+++|..+.++|
T Consensus 2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~ 81 (153)
T cd01928 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKH 81 (153)
T ss_pred EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCc
Confidence 58999999999999999999999999999999999999999999999999999999888888888999999998778889
Q ss_pred CcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEeC
Q 032870 90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLLY 131 (131)
Q Consensus 90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv~ 131 (131)
.++|+|+|+++++++++|||||++++.|+||++|+|||||+.
T Consensus 82 ~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~ 123 (153)
T cd01928 82 DSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVID 123 (153)
T ss_pred CCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEe
Confidence 889999999999999999999999999999999999999984
No 5
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=4.6e-45 Score=257.47 Aligned_cols=127 Identities=45% Similarity=0.834 Sum_probs=121.2
Q ss_pred CCCCCCEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCC
Q 032870 4 SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEI 83 (131)
Q Consensus 4 ~~~~~~~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~ 83 (131)
+++.+.+|.|+|+.|+|+||||++.||+||+||++||+.+||+++.||||++++++||||+.+++.++.++|+..+++|.
T Consensus 1 ~~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~ 80 (171)
T cd01925 1 EPPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEF 80 (171)
T ss_pred CCCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCccc
Confidence 46777899999999999999999999999999999999999999999999999999999999888888899999999998
Q ss_pred CCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 84 KPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 84 ~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
.+.++|+++|+|+|+++++++++|||||++++.|+||++|+|||||+
T Consensus 81 ~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~ 127 (171)
T cd01925 81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVT 127 (171)
T ss_pred ccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEE
Confidence 77888988999999999999999999999999999999999999997
No 6
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=4.1e-45 Score=252.42 Aligned_cols=120 Identities=49% Similarity=0.844 Sum_probs=114.7
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccCc
Q 032870 12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTG 91 (131)
Q Consensus 12 ~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 91 (131)
.|+|+.|+|+||||++.||+||+||++||+.+||+++.|||++|++++|+||+.+++.++.++++..+++|..+.++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 37999999999999999999999999999999999999999999999999999988888888999999999877899998
Q ss_pred ccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEeC
Q 032870 92 AGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLLY 131 (131)
Q Consensus 92 ~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv~ 131 (131)
+|+|+|++.++++++|||||++++.|+||++|+|||||+.
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~ 120 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVK 120 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEc
Confidence 9999999999999999999999999999999999999984
No 7
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1e-44 Score=253.06 Aligned_cols=122 Identities=52% Similarity=0.970 Sum_probs=116.7
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCcc
Q 032870 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH 89 (131)
Q Consensus 10 ~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~ 89 (131)
+|.|+|+.|+|+||||++.||+||+||++||+.|||+++.||||+|++++|+||+.+++.++.++++..+++|..+.++|
T Consensus 1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence 47899999999999999999999999999999999999999999999999999999888888999999999998778889
Q ss_pred CcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEeC
Q 032870 90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLLY 131 (131)
Q Consensus 90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv~ 131 (131)
.++|+|+|+++++++++|||||+++++|+||++|+|||||+.
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~ 122 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVG 122 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEc
Confidence 899999999999999999999999999999999999999973
No 8
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.7e-44 Score=248.85 Aligned_cols=120 Identities=71% Similarity=1.186 Sum_probs=114.3
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccCc
Q 032870 12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTG 91 (131)
Q Consensus 12 ~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 91 (131)
.|+|+.|+|+||||++.||++|+||++||++|||+++.|||++|++++|+||+.+++.++.++++..+++|..+.++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 37899999999999999999999999999999999999999999999999999888888888899999999777899999
Q ss_pred ccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEeC
Q 032870 92 AGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLLY 131 (131)
Q Consensus 92 ~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv~ 131 (131)
+|+|+|++.++++++|||||+++++|+||++|+|||||+.
T Consensus 81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~ 120 (146)
T cd01922 81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSK 120 (146)
T ss_pred CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEc
Confidence 9999999999999999999999999999999999999984
No 9
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=254.13 Aligned_cols=125 Identities=48% Similarity=0.771 Sum_probs=117.7
Q ss_pred CCCCCEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhc---CC-cCCceeEEEecCcEEEcCCCC-CCCCCCCcc
Q 032870 5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR---GY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSI 74 (131)
Q Consensus 5 ~~~~~~v~l~ts-----~G~i~ieL~~~~aP~t~~nF~~l~~~---g~-Y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~ 74 (131)
++.+.+|+|+.. .|||+|+||++.+|+||+||.+||.+ ++ |.|+.||||+|+|+|||||++ ++|+++.++
T Consensus 36 p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SI 115 (217)
T KOG0880|consen 36 PKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSI 115 (217)
T ss_pred CcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEe
Confidence 446789999987 68999999999999999999999983 34 999999999999999999998 779999999
Q ss_pred cCccCCCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
||+.|++|+ ..|+|.++|.|||++.++++|+||||||+.+.+||||+|+|||+|+
T Consensus 116 yG~~F~DEN-f~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl 170 (217)
T KOG0880|consen 116 YGEKFPDEN-FKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVL 170 (217)
T ss_pred ecCCCCCcc-ceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeeh
Confidence 999999998 8999999999999999999999999999999999999999999996
No 10
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-45 Score=277.01 Aligned_cols=125 Identities=51% Similarity=0.892 Sum_probs=122.3
Q ss_pred CCCCEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCC
Q 032870 6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKP 85 (131)
Q Consensus 6 ~~~~~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 85 (131)
....+|.|.|+.|+|.|||++|.+|++|+||+.||++|||+|+.|||.|++||||||||+++|.||+++||.+|.+|..+
T Consensus 275 Kkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~ 354 (518)
T KOG0883|consen 275 KKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFCS 354 (518)
T ss_pred cccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccccccCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 86 ~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
.|.|..||+|+||++|+++|+|||||+..++.+||++|++|||||
T Consensus 355 ~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvV 399 (518)
T KOG0883|consen 355 NLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVV 399 (518)
T ss_pred CCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeee
Confidence 999999999999999999999999999999999999999999998
No 11
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=7.5e-43 Score=245.22 Aligned_cols=120 Identities=48% Similarity=0.778 Sum_probs=109.5
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccC-------ccCCCCCC
Q 032870 12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYG-------HVFEDEIK 84 (131)
Q Consensus 12 ~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~-------~~~~~e~~ 84 (131)
.|+|+.|+|+||||++.||+||+||++||+.+||+++.||||+++++|||||+.+++.++.++++ ..+++|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 37899999999999999999999999999999999999999999999999999877777766554 35677876
Q ss_pred CCCccCcccEEEEEeCCCCCCcceEEEEcCC-CCCCCCCccEEEEEeC
Q 032870 85 PELKHTGAGILSMANAGPNTNGSQFFITLAP-ASHLDGNVNNIIVLLY 131 (131)
Q Consensus 85 ~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~Vv~ 131 (131)
+.++|.++|+|+|++.++++++|||||++.+ +|+||++|+|||||+.
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~ 128 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVE 128 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEc
Confidence 7889988999999999999999999999976 8999999999999984
No 12
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=268.44 Aligned_cols=128 Identities=45% Similarity=0.834 Sum_probs=125.3
Q ss_pred CCCCCCCEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCC
Q 032870 3 ASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDE 82 (131)
Q Consensus 3 ~~~~~~~~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e 82 (131)
.+++.+.+|.|.|+.|+|.||||+++||++|.||++||-.|||+|+.|||++|+|++|||||+++|+||.++||.+|.+|
T Consensus 7 ~EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE 86 (439)
T KOG0885|consen 7 LEPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADE 86 (439)
T ss_pred cCCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhh
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 83 IKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 83 ~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
.+++|++.++|+|+|++.+.+.||||||+||++.|+|+++|++||+|+
T Consensus 87 ~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVt 134 (439)
T KOG0885|consen 87 FHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVT 134 (439)
T ss_pred cCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeec
Confidence 999999999999999999999999999999999999999999999996
No 13
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=236.83 Aligned_cols=126 Identities=46% Similarity=0.768 Sum_probs=119.2
Q ss_pred CCCCCCEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhcCC--------cCCceeEEEecCcEEEcCCCC-CCCC
Q 032870 4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQGGDPT-GTGR 69 (131)
Q Consensus 4 ~~~~~~~v~l~ts-----~G~i~ieL~~~~aP~t~~nF~~l~~~g~--------Y~g~~f~rv~~~~~iq~G~~~-~~~~ 69 (131)
..+.+|.|+|+.+ .|||.||||+|.+|+|+|||.++|++.| |+++.|||||++|||||||+. ++|+
T Consensus 6 r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGt 85 (177)
T KOG0879|consen 6 RSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGT 85 (177)
T ss_pred cCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCc
Confidence 3566899999987 6899999999999999999999998765 999999999999999999976 8899
Q ss_pred CCCcccCccCCCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 70 GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 70 ~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
+..++|+..|++|+ ..++|..+|+|+|++++++++++||||+..++.|||++|+|||||+
T Consensus 86 G~~sIy~~~F~DEN-FtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvl 145 (177)
T KOG0879|consen 86 GVASIYGSTFPDEN-FTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVL 145 (177)
T ss_pred eEEEEcCCCCCCcc-eeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeee
Confidence 99999999999997 8999999999999999999999999999999999999999999997
No 14
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-43 Score=271.04 Aligned_cols=123 Identities=49% Similarity=0.841 Sum_probs=120.4
Q ss_pred CCEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCC
Q 032870 8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPEL 87 (131)
Q Consensus 8 ~~~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l 87 (131)
...+.++|+.|+|.|.||+++||+||+||-..|++|||+|..|||||++||||+|||.++|+||+++||..|++|.++.|
T Consensus 404 ~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~l 483 (558)
T KOG0882|consen 404 GKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNL 483 (558)
T ss_pred ccceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 88 KHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 88 ~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
+|+++-+|+||+.|+|+||||||||+.+.|||||+|+|||||.
T Consensus 484 rhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~ 526 (558)
T KOG0882|consen 484 RHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVT 526 (558)
T ss_pred ccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEe
Confidence 9999999999999999999999999999999999999999996
No 15
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-42 Score=227.67 Aligned_cols=121 Identities=51% Similarity=0.856 Sum_probs=119.1
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCcc
Q 032870 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH 89 (131)
Q Consensus 10 ~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~ 89 (131)
.|.|+|..|+|.||||.+.+|++|+||+.||...||++|.|||-+|+|++|+||+...|.++.++||..|++|...-|+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred CcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
+.||.|+|++++|++++|||||+.+.+|+||-+|+|||+||
T Consensus 82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvi 122 (161)
T KOG0884|consen 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122 (161)
T ss_pred ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeec
Confidence 99999999999999999999999999999999999999997
No 16
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.3e-40 Score=237.43 Aligned_cols=126 Identities=45% Similarity=0.740 Sum_probs=114.5
Q ss_pred CCCCCCEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhcCC--------cCCceeEEEecCcEEEcCCCC-CCCC
Q 032870 4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQGGDPT-GTGR 69 (131)
Q Consensus 4 ~~~~~~~v~l~ts-----~G~i~ieL~~~~aP~t~~nF~~l~~~g~--------Y~g~~f~rv~~~~~iq~G~~~-~~~~ 69 (131)
.++.+++|+|+++ .|+|+||||.+.||+||+||++||+.++ |+++.||||+|+++||+||+. ++++
T Consensus 14 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~ 93 (186)
T PLN03149 14 PNPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGT 93 (186)
T ss_pred CCCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCC
Confidence 3456789999975 5999999999999999999999997644 999999999999999999975 6788
Q ss_pred CCCcccCccCCCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 70 GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 70 ~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
++.++|+..+++|. ..++|.++|+|+|+++++++++|||||+++++|+||++|+|||||+
T Consensus 94 g~~~~~g~~f~~e~-~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi 153 (186)
T PLN03149 94 GCVSIYGSKFEDEN-FIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVL 153 (186)
T ss_pred CcccccCCccCCcc-cccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEE
Confidence 88888898899886 4678888999999999999999999999999999999999999997
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=2.3e-40 Score=236.81 Aligned_cols=124 Identities=31% Similarity=0.517 Sum_probs=106.7
Q ss_pred CCCCCEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCC
Q 032870 5 DDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIK 84 (131)
Q Consensus 5 ~~~~~~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~ 84 (131)
.+++++|.|+|+.|+|+||||++.||+||+||++||+.|||+|+.|||++|+|++|||++.....+ ..++..+++|..
T Consensus 25 ~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~--~~~~~~~~~e~~ 102 (190)
T PRK10903 25 AKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNPPIKNEAD 102 (190)
T ss_pred cCCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC--CCCCCcccCccc
Confidence 346778999999999999999999999999999999999999999999999999999997643221 223557888865
Q ss_pred CCCccCcccEEEEEeC-CCCCCcceEEEEcCCCCCCCC-----CccEEEEEeC
Q 032870 85 PELKHTGAGILSMANA-GPNTNGSQFFITLAPASHLDG-----NVNNIIVLLY 131 (131)
Q Consensus 85 ~~l~~~~~G~v~~~~~-~~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vv~ 131 (131)
..+. +++|+|+|++. ++++++|||||++++.++||+ +|+|||+|+.
T Consensus 103 ~~l~-~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~e 154 (190)
T PRK10903 103 NGLR-NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVK 154 (190)
T ss_pred ccCc-CCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEec
Confidence 5554 45999999986 489999999999999999984 8999999974
No 18
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=6.5e-40 Score=233.41 Aligned_cols=127 Identities=47% Similarity=0.722 Sum_probs=115.4
Q ss_pred CCCCCCEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHh---------cCCcCCceeEEEecCcEEEcCCCC-CCC
Q 032870 4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSR---------RGYYNNSKFHRIIKDFIVQGGDPT-GTG 68 (131)
Q Consensus 4 ~~~~~~~v~l~ts-----~G~i~ieL~~~~aP~t~~nF~~l~~---------~g~Y~g~~f~rv~~~~~iq~G~~~-~~~ 68 (131)
.+..+++|+|+++ .|+|+||||.+.||++|+||++||+ .++|+++.||||+|+++||+||+. .++
T Consensus 11 ~~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 11 EMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred ccCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 3456789999987 4999999999999999999999996 468999999999999999999976 567
Q ss_pred CCCCcccCccCCCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEeC
Q 032870 69 RGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLLY 131 (131)
Q Consensus 69 ~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv~ 131 (131)
.++.++++..+++|. ..++|.++|+|+|++.++++++|||||+++++|+||++|+|||||+.
T Consensus 91 ~~g~~~~g~~~~~e~-~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~ 152 (183)
T PTZ00060 91 TGGESIYGRKFTDEN-FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIE 152 (183)
T ss_pred CCCCcccccccCCcc-ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEc
Confidence 788888888898885 67889889999999999999999999999999999999999999983
No 19
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.3e-39 Score=228.45 Aligned_cols=122 Identities=51% Similarity=0.831 Sum_probs=111.0
Q ss_pred CEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHh--cC------CcCCceeEEEecCcEEEcCCCC-CCCCCCCcc
Q 032870 9 PEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSR--RG------YYNNSKFHRIIKDFIVQGGDPT-GTGRGGDSI 74 (131)
Q Consensus 9 ~~v~l~ts-----~G~i~ieL~~~~aP~t~~nF~~l~~--~g------~Y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~ 74 (131)
|+|+|+.+ .|+|+||||.+.||++|+||++||+ .+ +|+++.|||++|+++||+||+. +++.++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~ 80 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI 80 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence 46777765 8999999999999999999999997 35 8999999999999999999975 677788888
Q ss_pred cCccCCCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEeC
Q 032870 75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLLY 131 (131)
Q Consensus 75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv~ 131 (131)
++..+++|. ..++|.++|+|+|++.++++++|||||+|+++|+||++|+|||||+.
T Consensus 81 ~g~~~~~e~-~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~ 136 (164)
T cd01926 81 YGEKFPDEN-FKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVE 136 (164)
T ss_pred cCCccCCCC-ccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEE
Confidence 898899885 67889889999999999999999999999999999999999999973
No 20
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1e-39 Score=227.00 Aligned_cols=116 Identities=33% Similarity=0.514 Sum_probs=100.4
Q ss_pred EEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccCcc
Q 032870 13 LETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGA 92 (131)
Q Consensus 13 l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 92 (131)
|+|+.|+|+||||++.||+||+||++||+.|||+++.||||+|++++|+|++...... ..++..+++|....+. +++
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~~~-~~~ 78 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNGLS-NTR 78 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCccccccc-CCc
Confidence 7899999999999999999999999999999999999999999999999998744332 2235567777544444 569
Q ss_pred cEEEEEeC-CCCCCcceEEEEcCCCCCCCC-----CccEEEEEeC
Q 032870 93 GILSMANA-GPNTNGSQFFITLAPASHLDG-----NVNNIIVLLY 131 (131)
Q Consensus 93 G~v~~~~~-~~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vv~ 131 (131)
|+|||+++ ++++++|||||++++.++||+ +|+|||+|+.
T Consensus 79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~e 123 (155)
T cd01920 79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTE 123 (155)
T ss_pred eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEec
Confidence 99999986 489999999999999999995 7999999984
No 21
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2e-39 Score=238.89 Aligned_cols=124 Identities=28% Similarity=0.351 Sum_probs=110.6
Q ss_pred CCCCCCEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCceeEEEecC-cEEEcCCCCC
Q 032870 4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG-----------YYNNSKFHRIIKD-FIVQGGDPTG 66 (131)
Q Consensus 4 ~~~~~~~v~l~ts-----~G~i~ieL~~~~aP~t~~nF~~l~~~g-----------~Y~g~~f~rv~~~-~~iq~G~~~~ 66 (131)
+...+++|+|+++ .|+|+||||.+.||+||+||++||++. +|+++.||||+++ ++||+||+..
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 4567889999998 578999999999999999999999742 3999999999986 8999999864
Q ss_pred CCCCCCcccCccCCCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEeC
Q 032870 67 TGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLLY 131 (131)
Q Consensus 67 ~~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv~ 131 (131)
. +.+++|..|++|. ..++|+++|+|+|++.++++++|||||+|.++|+||++|+|||+||.
T Consensus 128 ~---g~s~~G~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVve 188 (249)
T PTZ00221 128 F---NVSSTGTPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVD 188 (249)
T ss_pred C---CccCCCCcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEe
Confidence 3 3456788899996 57889999999999999999999999999999999999999999983
No 22
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=2e-39 Score=227.27 Aligned_cols=118 Identities=30% Similarity=0.554 Sum_probs=101.0
Q ss_pred EEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccC
Q 032870 11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHT 90 (131)
Q Consensus 11 v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 90 (131)
|.|+|+.|+|+||||++.||+||+||++||+.|||+++.||||+|+|+||||++... .+ ...++..+++|....++|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CC-cCCCCCCcCCcccccccC-
Confidence 679999999999999999999999999999999999999999999999999987522 11 122355678886566666
Q ss_pred cccEEEEEeC-CCCCCcceEEEEcCCCCCCC-------C-CccEEEEEeC
Q 032870 91 GAGILSMANA-GPNTNGSQFFITLAPASHLD-------G-NVNNIIVLLY 131 (131)
Q Consensus 91 ~~G~v~~~~~-~~~~~~sqFfI~l~~~~~ld-------~-~~~vfG~Vv~ 131 (131)
++|+|||++. ++++++|||||++.+.++|| + +|+|||+|+.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~e 128 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVE 128 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEec
Confidence 5999999987 48999999999999988876 3 7999999973
No 23
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=5.7e-39 Score=227.22 Aligned_cols=117 Identities=35% Similarity=0.609 Sum_probs=98.6
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCC---------------------CC
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG---------------------GD 72 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~---------------------~~ 72 (131)
.|+.|+|+||||++.||+||+||++||+.+||++++||||++++++||||+.+.+.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 589999999999999999999999999999999999999999999999999755322 22
Q ss_pred cccCccCC----CCCCCCCccCcccEEEEEeCC--CCCCcceEEEEcC-------CCCCCCCCccEEEEEe
Q 032870 73 SIYGHVFE----DEIKPELKHTGAGILSMANAG--PNTNGSQFFITLA-------PASHLDGNVNNIIVLL 130 (131)
Q Consensus 73 ~~~~~~~~----~e~~~~l~~~~~G~v~~~~~~--~~~~~sqFfI~l~-------~~~~ld~~~~vfG~Vv 130 (131)
+.++..+. .+..+...|+.+|+|||++++ +++++|||||++. +.|+||++|+|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vv 153 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVT 153 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEe
Confidence 34443332 222245566779999999986 6999999999998 7899999999999997
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.5e-38 Score=217.61 Aligned_cols=118 Identities=53% Similarity=0.862 Sum_probs=107.3
Q ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccCc
Q 032870 12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTG 91 (131)
Q Consensus 12 ~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 91 (131)
+++|+.|+|+||||++.||++|+||++||+.++|+++.|||++|++++|+||+...+..+ +.++..+++|..+...|.+
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 478999999999999999999999999999999999999999999999999988554432 3556788999877776788
Q ss_pred ccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 92 AGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 92 ~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
+|+|+|++.++++++|||||+|.+.++||++|+|||||+
T Consensus 80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~ 118 (146)
T cd00317 80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVV 118 (146)
T ss_pred CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEe
Confidence 999999999999999999999999999999999999997
No 25
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-39 Score=229.75 Aligned_cols=123 Identities=46% Similarity=0.695 Sum_probs=116.0
Q ss_pred CCCEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHh--cCC-cCCceeEEEecCcEEEcCCCC-CCCCCCCcccCc
Q 032870 7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIYGH 77 (131)
Q Consensus 7 ~~~~v~l~ts-----~G~i~ieL~~~~aP~t~~nF~~l~~--~g~-Y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~ 77 (131)
.+|.|+++.. .|+|+++|..|..|+|++||..||. +|| |+|++||||||.||+||||++ ++|+++.++||.
T Consensus 135 ~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygk 214 (298)
T KOG0111|consen 135 ENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGK 214 (298)
T ss_pred hChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccc
Confidence 4677887765 6899999999999999999999995 567 999999999999999999998 889999999999
Q ss_pred cCCCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 78 VFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 78 ~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
.|.+|+ +.|+|..+|+|+|+++++++++||||||+....|||++|+|||.||
T Consensus 215 kfdden-f~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~ 266 (298)
T KOG0111|consen 215 KFDDEN-FTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVV 266 (298)
T ss_pred cccccc-eeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeec
Confidence 999997 8999999999999999999999999999999999999999999997
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=7.5e-36 Score=207.05 Aligned_cols=120 Identities=50% Similarity=0.865 Sum_probs=103.8
Q ss_pred EEEEEec-ceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCC--CcccCccCCCCCCC-
Q 032870 10 EVTLETS-MGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGG--DSIYGHVFEDEIKP- 85 (131)
Q Consensus 10 ~v~l~ts-~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~--~~~~~~~~~~e~~~- 85 (131)
.|.|+|+ .|+|+||||++.||++|+||++||+.++|+++.|||++|+++||+|++...+..+ ....+..+++|...
T Consensus 1 ~~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~ 80 (155)
T PF00160_consen 1 FVDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPS 80 (155)
T ss_dssp EEEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTT
T ss_pred CEEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccc
Confidence 3789997 9999999999999999999999999999999999999999999999987544311 12334468888743
Q ss_pred CCccCcccEEEEEeCC--CCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 86 ELKHTGAGILSMANAG--PNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 86 ~l~~~~~G~v~~~~~~--~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
.+.| ++|+|+|++.+ +++++|||||+|++.++||++|+|||+|+
T Consensus 81 ~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~ 126 (155)
T PF00160_consen 81 LLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVI 126 (155)
T ss_dssp SSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEE
T ss_pred cccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEe
Confidence 4556 69999999875 88899999999999999999999999997
No 27
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=221.25 Aligned_cols=121 Identities=49% Similarity=0.829 Sum_probs=115.1
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCc-------cCCCC
Q 032870 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGH-------VFEDE 82 (131)
Q Consensus 10 ~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~-------~~~~e 82 (131)
.|.|+|++|+|+|.||.+++|.+|.||++||+..||+.|.||-|..+|.+|.|||+++|.||.++|+. .|+.|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999998854 46889
Q ss_pred CCCCCccCcccEEEEEeCCCCCCcceEEEEcCC-CCCCCCCccEEEEEe
Q 032870 83 IKPELKHTGAGILSMANAGPNTNGSQFFITLAP-ASHLDGNVNNIIVLL 130 (131)
Q Consensus 83 ~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~Vv 130 (131)
..+.++|.+.|+|+|++.+.+.++|||||||++ +..|||+|+|||+|.
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~ 130 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVA 130 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehh
Confidence 999999999999999999999999999999987 589999999999985
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-31 Score=184.77 Aligned_cols=123 Identities=50% Similarity=0.778 Sum_probs=112.7
Q ss_pred CCCEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHHhc--CC-cCCceeEEE---ecCcEEEcCCCC-CCCCCCCcc
Q 032870 7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR--GY-YNNSKFHRI---IKDFIVQGGDPT-GTGRGGDSI 74 (131)
Q Consensus 7 ~~~~v~l~ts-----~G~i~ieL~~~~aP~t~~nF~~l~~~--g~-Y~g~~f~rv---~~~~~iq~G~~~-~~~~~~~~~ 74 (131)
.+++|+++.+ .|++.+||+.|..|+|++||..||.. ++ |++..|||+ ++++++|+||.+ .+++++.++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi 81 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI 81 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence 4678888864 79999999999999999999999963 33 999999993 346999999987 788999999
Q ss_pred cCccCCCCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
|++.|++|+ ..++|..+|+|+|++.+|++++|||||+++...|||++|+|||+|+
T Consensus 82 y~ekF~Den-FilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~ 136 (167)
T KOG0865|consen 82 YGEKFDDEN-FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVK 136 (167)
T ss_pred cccccCCcC-cEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceE
Confidence 999999997 8999999999999999999999999999999999999999999996
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=3.3e-05 Score=61.43 Aligned_cols=129 Identities=22% Similarity=0.240 Sum_probs=99.1
Q ss_pred CCCCCCCCCEEEEEecce----eEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCC-CCCCC---C
Q 032870 1 MLASDDGPPEVTLETSMG----SFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTG-TGRGG---D 72 (131)
Q Consensus 1 m~~~~~~~~~v~l~ts~G----~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~-~~~~~---~ 72 (131)
|++-..-...+.+.++.| .|.|+++.+-.|.-++-|..+|+.+++++..|.||...+++|.||..- ...+| .
T Consensus 91 miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 91 MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEY 170 (558)
T ss_pred hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEe
Confidence 455555566788999999 999999999999999999999999999999999999999999998641 11111 1
Q ss_pred cc-cC-ccCC-CCCCCCCccCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 73 SI-YG-HVFE-DEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 73 ~~-~~-~~~~-~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
+. .+ ..+| .+.+..++|. .-++..........+-+|++.-...+.++.+..|+|++.
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ecCCCcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 11 11 1122 2344667776 667777666666667899999999999999999999985
No 30
>PRK00969 hypothetical protein; Provisional
Probab=96.02 E-value=0.13 Score=41.97 Aligned_cols=74 Identities=23% Similarity=0.236 Sum_probs=45.3
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHHhcCC--cCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccCcccE
Q 032870 17 MGSFTVELYYKHSPRTCRNFAELSRRGY--YNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGI 94 (131)
Q Consensus 17 ~G~i~ieL~~~~aP~t~~nF~~l~~~g~--Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~ 94 (131)
.--|.||||.+.||+|+.-|+++.--.+ -=-.++|-..++.++-=|+. .+...+.+|+.|.-. ..+|.
T Consensus 377 ~~vi~IeLydd~AP~s~~yFR~~tGL~~~~VG~L~v~F~~~d~~lFk~~~---------~~~k~liPEN~P~~~-V~ag~ 446 (508)
T PRK00969 377 DKLIEIELYDDKAPRTVWYFRKVTGLKTKPVGKLPVYFKYEDTYLFKGNI---------EYAKGLLPENTPEDK-VKAGE 446 (508)
T ss_pred HHEEEEEEcCcCCchHHHHHHHhcCCcccccceeEEEEEeCCeEEEccCh---------hhccccCCCCCCCCc-cccce
Confidence 3578999999999999999999874322 12345666666655542222 123334455544433 33777
Q ss_pred EEEEeC
Q 032870 95 LSMANA 100 (131)
Q Consensus 95 v~~~~~ 100 (131)
+++-|.
T Consensus 447 IgvTN~ 452 (508)
T PRK00969 447 IGVTNM 452 (508)
T ss_pred Eeeech
Confidence 777653
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.01 E-value=0.092 Score=42.70 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=58.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccCcccEEEEE
Q 032870 19 SFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMA 98 (131)
Q Consensus 19 ~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~ 98 (131)
.+.+||. ..||.++++|+.+.+.|.++ ..+....|+.. ....+...|.|+ +..+++|+|.+.
T Consensus 202 y~evE~~-~~~p~s~EH~la~~~~G~~~---Vd~~tsTfi~d-----------~~L~g~~~p~En---~~~R~rGtVTVR 263 (503)
T TIGR03268 202 YVEVELD-PNAPVSVEHFLALMEDGTFR---VDYRTSTFISD-----------DSLRGLDKPEEN---IEKRRRGAVTVR 263 (503)
T ss_pred EEEEEEc-CCCChhHHHHHHHHhCCeEE---EeeeecceEec-----------ccccCccCCccc---cCcccceeEEEE
Confidence 5677875 67999999999999988621 11111111111 112244555664 245669999999
Q ss_pred eCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 99 NAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 99 ~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
+.|.+ .-.-||--.+.+.- -.|+|+|+|+
T Consensus 264 n~G~G--~G~VYIYredr~ss-~sHtvVG~V~ 292 (503)
T TIGR03268 264 NSGVG--EGRVYIYREDRPSS-LSHNVVGHVT 292 (503)
T ss_pred eeccC--ceeEEEEcCCCCCC-cccceeEEEe
Confidence 87643 34689988776542 3599999996
No 32
>PRK00969 hypothetical protein; Provisional
Probab=95.91 E-value=0.1 Score=42.49 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=58.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccCcccEEEEE
Q 032870 19 SFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMA 98 (131)
Q Consensus 19 ~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~ 98 (131)
.+.+||. ..||.++++|+.+.+.|.++ ..+....|+.. ....+...+.|+ +..+++|+|.+.
T Consensus 205 y~eve~~-~~~p~s~EH~la~~~~G~f~---Vd~~tstfI~d-----------~~L~g~~~p~En---~~~R~~GtVTVR 266 (508)
T PRK00969 205 YVEVELD-PGAPKSVEHFLALLEDGTFE---VDFETSTFIAD-----------DRLQGLKIPEEN---FEPRRRGTVTVR 266 (508)
T ss_pred EEEEEEc-CCCCchHHHHHHHHhCCeEE---EeeeecceEee-----------ccccCccCCccc---cCccccceEEEE
Confidence 5677885 57999999999999988621 11111111111 112244555564 245669999999
Q ss_pred eCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 99 NAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 99 ~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
+.|.+ .-.-||--.+-+.- -.|+|+|+|+
T Consensus 267 t~G~g--~G~vYIyredr~ss-~sHtvVG~V~ 295 (508)
T PRK00969 267 TAGVG--VGKVYIYREDRPSS-LSHTVVGRVT 295 (508)
T ss_pred eeccC--ceeEEEECCCCCCC-ccceeEEEEe
Confidence 87644 34689988776542 3599999996
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.85 E-value=0.17 Score=41.16 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=44.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHHhcCC--cCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccCcccE
Q 032870 17 MGSFTVELYYKHSPRTCRNFAELSRRGY--YNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGI 94 (131)
Q Consensus 17 ~G~i~ieL~~~~aP~t~~nF~~l~~~g~--Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~ 94 (131)
..-|.||||.+.||+|+.-|+++.--.. ---.++|-..++..+-=|+. .+...+.+|+.|.-. ..+|.
T Consensus 374 ~~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~~---------~~~k~LiPEN~P~~~-V~ag~ 443 (503)
T TIGR03268 374 DKVIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGNK---------ELAKGLIPENTPEDK-VEAGV 443 (503)
T ss_pred HhEEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccCc---------hhccccCCCCCCCCc-cccce
Confidence 4578999999999999999999863221 12345555666654442221 123334455544433 33777
Q ss_pred EEEEeC
Q 032870 95 LSMANA 100 (131)
Q Consensus 95 v~~~~~ 100 (131)
+++-|.
T Consensus 444 IgvTN~ 449 (503)
T TIGR03268 444 IGVTNQ 449 (503)
T ss_pred Eeeech
Confidence 777653
No 34
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=2.2 Score=34.13 Aligned_cols=87 Identities=20% Similarity=0.296 Sum_probs=55.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCC----cCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCCCCCCCCCccCcccE
Q 032870 19 SFTVELYYKHSPRTCRNFAELSRRGY----YNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGI 94 (131)
Q Consensus 19 ~i~ieL~~~~aP~t~~nF~~l~~~g~----Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~ 94 (131)
.+.+||- ..+|++|++|++|.+.|- |.-.+|--. .+......+.|+ +-...+|.
T Consensus 204 y~eve~s-~nsP~saEH~lalmedG~lri~~~tntfis~------------------~~lq~~~~~~en---~d~RerG~ 261 (512)
T COG4070 204 YFEVELS-RNSPKSAEHFLALMEDGTLRIDVTTNTFISD------------------DTLQEEKVPEEN---FDLRERGA 261 (512)
T ss_pred EEEEEeC-CCCchhHHHHHHHhhcceEEEEEeccceeec------------------cccccccCChhh---hhhhhcce
Confidence 5677885 569999999999999874 222222111 112234455554 23345999
Q ss_pred EEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 95 LSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 95 v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
++..+.+.+ ...-||.-.+-+.- -.|.|+|||+
T Consensus 262 iTvRn~Gvg--eGrvYIyRedR~ss-~sHnvVGrV~ 294 (512)
T COG4070 262 ITVRNVGVG--EGRVYIYREDRPSS-LSHNVVGRVI 294 (512)
T ss_pred EEEEeeecc--cceEEEEecCCCCc-cccceeeeee
Confidence 999887543 33678877665432 3599999986
No 35
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=90.60 E-value=0.39 Score=33.16 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=20.5
Q ss_pred cceeEEEEEcCCCChHHHHHHHHHH
Q 032870 16 SMGSFTVELYYKHSPRTCRNFAELS 40 (131)
Q Consensus 16 s~G~i~ieL~~~~aP~t~~nF~~l~ 40 (131)
..-.++.+|..|.||+||+.|.+..
T Consensus 6 ~g~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 6 RGVSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp TTEEEEEEE-TTTSHHHHHHHHHH-
T ss_pred CCeEEEEEEcccCChHHHHHHHHhC
Confidence 3447899999999999999999987
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=1.3 Score=35.42 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHh
Q 032870 18 GSFTVELYYKHSPRTCRNFAELSR 41 (131)
Q Consensus 18 G~i~ieL~~~~aP~t~~nF~~l~~ 41 (131)
--|.||||.+.||.++.-|.++..
T Consensus 376 kiieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 376 KIIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred hEEEEEecCCCCchhhHHHHhhcc
Confidence 368999999999999999999874
No 37
>PHA03001 putative virion core protein; Provisional
Probab=81.77 E-value=5.3 Score=26.89 Aligned_cols=48 Identities=25% Similarity=0.359 Sum_probs=34.7
Q ss_pred CEEEEEecceeEEEEE--cCCCCh------HHHHHHHHHHhcC-CcCCceeEEEecC
Q 032870 9 PEVTLETSMGSFTVEL--YYKHSP------RTCRNFAELSRRG-YYNNSKFHRIIKD 56 (131)
Q Consensus 9 ~~v~l~ts~G~i~ieL--~~~~aP------~t~~nF~~l~~~g-~Y~g~~f~rv~~~ 56 (131)
..|+|+|..|++.+.. -+..+| +++++|++..++= .-+-+.|+-++++
T Consensus 4 vNIfLEsd~grvkl~~~~~~~~~~~~~~~~ka~~~fl~~L~kYi~v~eStFylvvrd 60 (132)
T PHA03001 4 VNIFLETDAGRVKLAIENPDKVCATKAEMRKAINKFLELLKKYIHVDKSTFYLVVKD 60 (132)
T ss_pred eEEEEeccCCceEEEEcCCCccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 3589999999766655 444455 4778998887631 2578899999987
No 38
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=81.40 E-value=7.9 Score=26.05 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=34.7
Q ss_pred EEEEEecceeEEEEEcCCC--Ch-------HHHHHHHHHHhcC-CcCCceeEEEecC
Q 032870 10 EVTLETSMGSFTVELYYKH--SP-------RTCRNFAELSRRG-YYNNSKFHRIIKD 56 (131)
Q Consensus 10 ~v~l~ts~G~i~ieL~~~~--aP-------~t~~nF~~l~~~g-~Y~g~~f~rv~~~ 56 (131)
.++|+|..|++.+..-.+. +| ++++.|++..++= .-+-+.|+-++++
T Consensus 5 NIfLEsd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEeccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHhhEEecccEEEEEEec
Confidence 5899999998777766444 22 3688899887641 1578899999987
No 39
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=75.28 E-value=3.2 Score=32.76 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=28.6
Q ss_pred cCcccEEEEEeCCCCCCcceEEEEcCCCCCCCCCccEEEEEe
Q 032870 89 HTGAGILSMANAGPNTNGSQFFITLAPASHLDGNVNNIIVLL 130 (131)
Q Consensus 89 ~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vv 130 (131)
...+|.|.+.+.....-..+.-|++.+.|. |++..|+|+|.
T Consensus 297 ~r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~ 337 (357)
T PF05913_consen 297 ERKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVD 337 (357)
T ss_dssp -B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-
T ss_pred cccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEEC
Confidence 355999999998766667799999999987 99999999995
No 40
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=66.59 E-value=34 Score=22.51 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=50.3
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHH----hcCCcCCceeEEEecCcEEEcCCCCCCCCCCCcccCccCC-CCCC
Q 032870 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELS----RRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFE-DEIK 84 (131)
Q Consensus 10 ~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~----~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~-~e~~ 84 (131)
++.|......+.++|+.. .|++.|++.. +-..|- ..++--.|- ..+ ++.
T Consensus 2 kI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g-~E~y~~~p~---------------------~l~~~~~- 55 (120)
T PF04126_consen 2 KIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWG-NEKYFSLPL---------------------KLPTEEN- 55 (120)
T ss_dssp EEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECT-TEEEEE-S--------------------------SSS-
T ss_pred eEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCC-ceEEEeCCC---------------------CCCcccC-
Confidence 577788888999999876 7899998876 112242 232222111 111 111
Q ss_pred CCCccCcccEEEEEeCCCCCCcceEEEEcCCCC-------CCCCCccEEEEEe
Q 032870 85 PELKHTGAGILSMANAGPNTNGSQFFITLAPAS-------HLDGNVNNIIVLL 130 (131)
Q Consensus 85 ~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~-------~ld~~~~vfG~Vv 130 (131)
.+ ...+.|.|+.-..+. -|-|-.++.| .+-...+++|||+
T Consensus 56 ~~-~~~~~GDi~Yw~pg~-----~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~ 102 (120)
T PF04126_consen 56 PR-SSVEAGDIAYWPPGG-----ALAIFYGDTPISEGGEIRPASPVNVLGRIV 102 (120)
T ss_dssp EE-SSB-TTEEEEECCCT-----EEEEESS--TT--TTSB--SSSEEEEEEEE
T ss_pred cc-ccccCceEEEeCCCC-----EEEEEecCcccccccccccCCcceEEEEEC
Confidence 12 223588888865543 3778887764 4556789999986
No 41
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=42.00 E-value=15 Score=20.46 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=16.3
Q ss_pred EEEEEec---ceeEEEEEcCCCChHHH
Q 032870 10 EVTLETS---MGSFTVELYYKHSPRTC 33 (131)
Q Consensus 10 ~v~l~ts---~G~i~ieL~~~~aP~t~ 33 (131)
.+++..+ -||+++||.+++|-.-.
T Consensus 18 ~ivmRvPleGGGRLVvEl~~~Ea~~L~ 44 (51)
T PF11314_consen 18 GIVMRVPLEGGGRLVVELNPDEAKELG 44 (51)
T ss_pred eEEEEEecCCCcEEEEEeCHHHHHHHH
Confidence 3455554 57999999887765433
No 42
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=41.37 E-value=72 Score=22.18 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=27.6
Q ss_pred CEEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCC
Q 032870 9 PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGY 44 (131)
Q Consensus 9 ~~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~ 44 (131)
..|.|....|+|.+||-.+ -...+...+.|+.-+
T Consensus 66 ~~veL~V~vGri~lele~~--~~~ie~I~~iCee~l 99 (153)
T PF02505_consen 66 EEVELTVKVGRIILELEDE--EDVIEKIREICEEVL 99 (153)
T ss_pred EEEEEEEEEeEEEEEecCc--HHHHHHHHHHHHHhC
Confidence 3577888899999999875 567888999998765
No 43
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=38.88 E-value=92 Score=19.05 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=28.9
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEe
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRII 54 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~ 54 (131)
..+.|++.|++-+ .+..++.|++.|+.+--. +.+.++.
T Consensus 38 N~~dg~V~i~~~G--~~~~l~~f~~~l~~g~p~-a~V~~i~ 75 (91)
T PF00708_consen 38 NLPDGSVEIEAEG--EEEQLEEFIKWLKKGPPP-ARVDEIE 75 (91)
T ss_dssp E-TTSEEEEEEEE--EHHHHHHHHHHHHHSSTT-SEEEEEE
T ss_pred ECCCCEEEEEEEe--CHHHHHHHHHHHHhCCCC-cEEEEEE
Confidence 4568888888877 678899999999987544 6666664
No 44
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=38.52 E-value=1e+02 Score=19.68 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=30.6
Q ss_pred CCCEEEEEecc-eeEEEEEcCCCChHHHHHHHHHHhcCCcCC
Q 032870 7 GPPEVTLETSM-GSFTVELYYKHSPRTCRNFAELSRRGYYNN 47 (131)
Q Consensus 7 ~~~~v~l~ts~-G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g 47 (131)
..|.++|-... |.++..+-+...+.....+++-+..+.|++
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 125 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKAYKK 125 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhhhcC
Confidence 35666666666 799888888877777778887777777764
No 45
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=37.04 E-value=48 Score=20.53 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCCEEEEEecceeEEEEEcCCCChHHHHHHHHHHhc
Q 032870 7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRR 42 (131)
Q Consensus 7 ~~~~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~ 42 (131)
....+.|+|..+.+.| +|...+.|++..++
T Consensus 69 ~~~~i~I~t~~~~y~i------sp~~~~~fi~~l~~ 98 (100)
T PF10882_consen 69 NKNVILIKTKDKTYVI------SPEDPEEFIEALKK 98 (100)
T ss_pred CCCEEEEEECCceEEE------cCCCHHHHHHHHHh
Confidence 4567888888877765 78888899887754
No 46
>PF08710 nsp9: nsp9 replicase; InterPro: IPR014822 Nsp9 is a single-stranded RNA-binding viral protein likely to be involved in RNA synthesis []. The structure comprises of a single beta barrel []. ; GO: 0003723 RNA binding, 0019079 viral genome replication, 0019034 viral replication complex; PDB: 2J97_A 2J98_A 3EE7_B 1QZ8_A 1UW7_A.
Probab=35.57 E-value=25 Score=23.07 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=12.8
Q ss_pred CCCCCEEEEEecceeEEEEEcC
Q 032870 5 DDGPPEVTLETSMGSFTVELYY 26 (131)
Q Consensus 5 ~~~~~~v~l~ts~G~i~ieL~~ 26 (131)
.+.-..|.++.+.|.++|||.+
T Consensus 48 ~~~Lk~vk~~~d~G~v~ieLeP 69 (111)
T PF08710_consen 48 KDNLKYVKWEKDDGKVVIELEP 69 (111)
T ss_dssp -S-EEEEEEE-TTSEEEEEB--
T ss_pred CCCceEEEEEccCCEEEEecCC
Confidence 3444577778888888888864
No 47
>PRK14420 acylphosphatase; Provisional
Probab=34.01 E-value=1.2e+02 Score=18.77 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=28.0
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEE
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRI 53 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv 53 (131)
.++.|++.|++-++ +..++.|++.++.+ -..+.+..+
T Consensus 36 N~~dG~Vei~~qG~--~~~i~~f~~~l~~~-p~~a~V~~i 72 (91)
T PRK14420 36 NRDDGTVEIEAEGP--EEALQLFLDAIEKG-SPFSKVTDV 72 (91)
T ss_pred ECCCCcEEEEEEEC--HHHHHHHHHHHHhC-CCCCEEEEE
Confidence 45688999999775 68899999999877 345555554
No 48
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=33.71 E-value=55 Score=24.05 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCEEEEEecceeEEEEEcCC-CChHHHHHHHHHH
Q 032870 8 PPEVTLETSMGSFTVELYYK-HSPRTCRNFAELS 40 (131)
Q Consensus 8 ~~~v~l~ts~G~i~ieL~~~-~aP~t~~nF~~l~ 40 (131)
.-+|+++|+++ +.||+-+. ..|.|-++|-.|-
T Consensus 94 kLqVyi~T~kn-vLiEvnp~~rIPrtfkrfsglM 126 (236)
T KOG3073|consen 94 KLQVYIHTAKN-VLIEVNPQVRIPRTFKRFSGLM 126 (236)
T ss_pred eeEEEEEccCc-eEEEecccccCCCCHHHHHHHH
Confidence 45899999987 45788776 5788888876554
No 49
>PRK14452 acylphosphatase; Provisional
Probab=32.59 E-value=1e+02 Score=19.99 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=25.9
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEE
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRI 53 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv 53 (131)
.++.|+|.|++-+ .+..++.|+++++.+- ..+.+.++
T Consensus 54 N~~dGsVeI~~qG--~~~~ve~F~~~l~~gP-~~A~V~~v 90 (107)
T PRK14452 54 NLSDGSVEVQAEG--PPLALSELRAWCERGP-PGARVKRV 90 (107)
T ss_pred ECCCCCEEEEEEc--CHHHHHHHHHHHhcCC-CCcEEEEE
Confidence 4557888888866 4668999999998752 24444444
No 50
>PRK14426 acylphosphatase; Provisional
Probab=30.59 E-value=1.2e+02 Score=18.90 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=26.3
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEE
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRI 53 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv 53 (131)
..+.|++.|++-+ .+..++.|++.++.+.=..+.+..+
T Consensus 38 N~~dG~Vei~~~G--~~~~i~~f~~~l~~g~P~~a~V~~i 75 (92)
T PRK14426 38 NLDDGSVEVVACG--EEEQVEKLMEWLKEGGPRSARVDRV 75 (92)
T ss_pred ECCCCcEEEEEEe--CHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 3467888888866 5778999999998753233444444
No 51
>PRK14451 acylphosphatase; Provisional
Probab=30.09 E-value=1.1e+02 Score=19.04 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=22.8
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcC
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRG 43 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g 43 (131)
.++.|++.|++-+ .+..++.|++.++.|
T Consensus 37 N~~dG~Vei~~qG--~~~~i~~f~~~l~~g 64 (89)
T PRK14451 37 NLADGRVEVFACG--KEDKLEEFYTWLQKG 64 (89)
T ss_pred ECCCCCEEEEEEE--CHHHHHHHHHHHhhC
Confidence 4568999999976 567899999999854
No 52
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=29.30 E-value=53 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.450 Sum_probs=26.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCCcCCceeE
Q 032870 19 SFTVELYYKHSPRTCRNFAELSRRGYYNNSKFH 51 (131)
Q Consensus 19 ~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~ 51 (131)
.+.+...-+.-|..-+.|...++.+||++..|+
T Consensus 83 QVrf~i~~~C~PL~E~~fk~aI~~Ny~~~~kF~ 115 (130)
T PF10539_consen 83 QVRFRIRWDCPPLPESQFKPAIKDNYYDKNKFR 115 (130)
T ss_pred EEEEEEeeeeecCCHHHHHHHHHHhCCCCCccc
Confidence 455666667789999999999999999987764
No 53
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=27.49 E-value=1.8e+02 Score=20.17 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.9
Q ss_pred EEEEEecceeEEEEEcCCCChHHHHHHHHHHhcCC
Q 032870 10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGY 44 (131)
Q Consensus 10 ~v~l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~ 44 (131)
.|.|....|+|.+||.. ....+...+.|+.-+
T Consensus 66 ~veL~V~VGrI~le~~~---~~~i~~I~eiC~e~~ 97 (150)
T TIGR03260 66 DVELRVQVGRIILELED---EDIVEEIEEICKEML 97 (150)
T ss_pred EEEEEEEEeEEEEEecC---HHHHHHHHHHHHhhC
Confidence 57778889999999983 357889999998765
No 54
>PRK14442 acylphosphatase; Provisional
Probab=26.08 E-value=1.5e+02 Score=18.40 Aligned_cols=27 Identities=11% Similarity=0.040 Sum_probs=21.5
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhc
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRR 42 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~ 42 (131)
.++.|++.|++-+ .+..++.|+++++.
T Consensus 38 N~~dG~Vei~~qG--~~~~i~~f~~~l~~ 64 (91)
T PRK14442 38 NLDDGRVEVVWEG--EEDRAKALERWLGR 64 (91)
T ss_pred ECCCCCEEEEEEc--CHHHHHHHHHHHhh
Confidence 4568898888866 45579999999974
No 55
>PRK14445 acylphosphatase; Provisional
Probab=25.50 E-value=1.2e+02 Score=18.74 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=22.3
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcC
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRG 43 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g 43 (131)
.++.|++.|++-+ .+..++.|++.++.+
T Consensus 38 N~~dG~Vei~~qG--~~~~l~~f~~~l~~g 65 (91)
T PRK14445 38 NLPDGTVEIEAQG--SSGMIDELIKQAERG 65 (91)
T ss_pred ECCCCeEEEEEEE--CHHHHHHHHHHHHhC
Confidence 4568899998866 567799999999853
No 56
>PRK14446 acylphosphatase; Provisional
Probab=25.37 E-value=1.5e+02 Score=18.35 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=22.4
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcC
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRG 43 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g 43 (131)
.++.|++.|++-++ +...+.|++.++.+
T Consensus 36 N~~dGsVei~~qG~--~~~l~~f~~~l~~g 63 (88)
T PRK14446 36 NQADGSVEVVAAGS--AAALEALEAWLWQG 63 (88)
T ss_pred ECCCCCEEEEEEeC--HHHHHHHHHHHhhC
Confidence 45689999999774 56899999999853
No 57
>PRK14436 acylphosphatase; Provisional
Probab=25.11 E-value=1.6e+02 Score=18.23 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=22.7
Q ss_pred EEecceeEEEEEcCCCChHHHHHHHHHHhcC
Q 032870 13 LETSMGSFTVELYYKHSPRTCRNFAELSRRG 43 (131)
Q Consensus 13 l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g 43 (131)
-.++.|++.|++-+ .+..++.|++.++.+
T Consensus 37 ~N~~dG~Vei~~qG--~~~~i~~f~~~l~~g 65 (91)
T PRK14436 37 RNLPDGSVEAVLEG--DEERVEALIGWAHQG 65 (91)
T ss_pred EECCCCcEEEEEEc--CHHHHHHHHHHHhhC
Confidence 34568899999876 556799999999854
No 58
>PRK14447 acylphosphatase; Provisional
Probab=23.89 E-value=1.5e+02 Score=18.61 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=22.3
Q ss_pred Eecce-eEEEEEcCCCChHHHHHHHHHHhcC
Q 032870 14 ETSMG-SFTVELYYKHSPRTCRNFAELSRRG 43 (131)
Q Consensus 14 ~ts~G-~i~ieL~~~~aP~t~~nF~~l~~~g 43 (131)
.++.| ++.|++-+ .+..++.|++.++.|
T Consensus 38 N~~dG~~Vei~~qG--~~~~l~~f~~~l~~g 66 (95)
T PRK14447 38 NRSDGRTVEAVLEG--PRDAVLKVIEWARVG 66 (95)
T ss_pred ECCCCCEEEEEEEe--CHHHHHHHHHHHhhC
Confidence 34678 68888876 488999999999865
No 59
>PF12090 Spt20: Spt20 family; InterPro: IPR021950 This presumed domain is found in the Spt20 proteins from both human and yeast. The Spt20 protein is part of the SAGA complex which is a large cmplex mediating histone deacetylation. Yeast Spt20 has been shown to play a role in structural integrity of the SAGA complex as as no intact SAGA could be purified in spt20 deletion strains.
Probab=23.86 E-value=1.2e+02 Score=21.58 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=29.9
Q ss_pred CEEEEEecceeEEE-------EEcCCCChHHHHHHHHHHhcC----------------CcCCceeEEEecC
Q 032870 9 PEVTLETSMGSFTV-------ELYYKHSPRTCRNFAELSRRG----------------YYNNSKFHRIIKD 56 (131)
Q Consensus 9 ~~v~l~ts~G~i~i-------eL~~~~aP~t~~nF~~l~~~g----------------~Y~g~~f~rv~~~ 56 (131)
+...++.=-+-..+ .+|+...|. +.|++.++.+ ||+||.+-+|..-
T Consensus 14 pSl~vhL~p~~f~f~~~~~~~~~~pY~~~~--k~~L~~I~~~~iP~~Lle~l~~~~v~FYdGClIveV~D~ 82 (182)
T PF12090_consen 14 PSLIVHLYPNHFRFSLNDQQDGSFPYNSPM--KEFLEYIDAGEIPHDLLELLDDANVPFYDGCLIVEVRDH 82 (182)
T ss_pred CeEEEEECCCCeeEeecCCCCceecCCchH--HHHHHHHHcCCCCHHHHHHHHhCCCeeEcCEEEEEEecc
Confidence 44555554443333 355566664 7888888654 7999999988754
No 60
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=22.42 E-value=1.5e+02 Score=20.63 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=28.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEEec
Q 032870 20 FTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIK 55 (131)
Q Consensus 20 i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv~~ 55 (131)
+.|-||.-+-|..+.|.+++|. -.|+..|.|.|
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca---~tga~LhlI~P 35 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCA---ATGAELHLIEP 35 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHH---hcCCeEEEEcc
Confidence 6788999999999999999997 34888888876
No 61
>PRK14441 acylphosphatase; Provisional
Probab=22.36 E-value=1.6e+02 Score=18.34 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=22.4
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcC
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRG 43 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g 43 (131)
.++.|++.|++-++ +...+.|++.++.+
T Consensus 39 N~~dG~Vei~~qG~--~~~i~~f~~~l~~g 66 (93)
T PRK14441 39 NLPDGRVEAEAEGE--RAAVGALVRWCHAG 66 (93)
T ss_pred ECCCCEEEEEEEEC--HHHHHHHHHHHhhC
Confidence 45688999999875 55899999999754
No 62
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.88 E-value=1e+02 Score=17.90 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=19.5
Q ss_pred CCChHHHHHHHHHHh-----cC--CcCCceeEEE
Q 032870 27 KHSPRTCRNFAELSR-----RG--YYNNSKFHRI 53 (131)
Q Consensus 27 ~~aP~t~~nF~~l~~-----~g--~Y~g~~f~rv 53 (131)
-..|.++.+.++-|+ +| ||++...-+|
T Consensus 13 Gf~~~tA~~IIrqAK~~lV~~G~~~Y~nkRlg~V 46 (59)
T PF11372_consen 13 GFSESTARDIIRQAKALLVQKGFSFYNNKRLGRV 46 (59)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcccCCccCcc
Confidence 357889999998875 45 4888766554
No 63
>PRK14421 acylphosphatase; Provisional
Probab=21.79 E-value=2.3e+02 Score=18.04 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=22.5
Q ss_pred EEecceeEEEEEcCCCChHHHHHHHHHHhcC
Q 032870 13 LETSMGSFTVELYYKHSPRTCRNFAELSRRG 43 (131)
Q Consensus 13 l~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g 43 (131)
-.++.|++.|++-+ .+..++.|++.++.+
T Consensus 37 ~N~~dG~Vei~~~G--~~~~i~~f~~~l~~g 65 (99)
T PRK14421 37 RNRRDGSVEALFAG--PADAVAEMIARCRRG 65 (99)
T ss_pred EECCCCEEEEEEeC--CHHHHHHHHHHHHhC
Confidence 35668889888865 567799999999743
No 64
>PRK14444 acylphosphatase; Provisional
Probab=21.72 E-value=1.7e+02 Score=18.16 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=26.3
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEE
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRI 53 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv 53 (131)
.++.|++.|++-++ +..++.|++.++.+- ..+.+.++
T Consensus 38 N~~dG~Vei~~qG~--~~~i~~f~~~l~~gp-~~a~V~~i 74 (92)
T PRK14444 38 NLSDGRVEAVFEGS--RPAVQKMISWCYSGP-SHARVERV 74 (92)
T ss_pred ECCCCcEEEEEEcC--HHHHHHHHHHHHhCC-CCcEEEEE
Confidence 34578899888875 566999999998543 24555555
No 65
>KOG3422 consensus Mitochondrial ribosomal protein L16 [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=1.4e+02 Score=21.97 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=25.6
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCC
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGY 44 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~ 44 (131)
-...|+|.+|+-+|..-..|+.|+..+....
T Consensus 137 ~V~~GrIl~EmgG~~~~~~Ar~al~~aa~kl 167 (221)
T KOG3422|consen 137 RVKAGRILFEMGGDVEEEEARQALLQAAHKL 167 (221)
T ss_pred EecCCcEEEEeCCcccHHHHHHHHHHHHhcC
Confidence 3468999999999977778999999886554
No 66
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=21.15 E-value=1.6e+02 Score=16.97 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=12.4
Q ss_pred CCEEEEEecceeEEEE
Q 032870 8 PPEVTLETSMGSFTVE 23 (131)
Q Consensus 8 ~~~v~l~ts~G~i~ie 23 (131)
+..+.++|..|.+.|.
T Consensus 25 ~~~I~l~t~~g~l~I~ 40 (66)
T PF07873_consen 25 DEEIRLNTKKGKLTIK 40 (66)
T ss_dssp TTEEEEEETTEEEEEE
T ss_pred CCEEEEEeCCEEEEEE
Confidence 4578889998888774
No 67
>PRK14440 acylphosphatase; Provisional
Probab=20.93 E-value=1.4e+02 Score=18.54 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=25.1
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcCCcCCceeEEE
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRI 53 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~f~rv 53 (131)
.++.|++.|.+-+ .+..++.|++.++.+- ..+...++
T Consensus 37 N~~dG~Vei~~~G--~~~~v~~f~~~l~~gp-~~a~V~~i 73 (90)
T PRK14440 37 NLPDGSVEVVAEG--YEEALSKLLERIKQGP-PAAEVEKV 73 (90)
T ss_pred ECCCCCEEEEEEc--CHHHHHHHHHHHhhCC-CCcEEEEE
Confidence 4567888888866 4478999999998652 23444443
No 68
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.72 E-value=2.8e+02 Score=19.31 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=27.0
Q ss_pred eeEEEEEcCCCChHHH---HHHHHHHhcCCcCCceeEEEecC
Q 032870 18 GSFTVELYYKHSPRTC---RNFAELSRRGYYNNSKFHRIIKD 56 (131)
Q Consensus 18 G~i~ieL~~~~aP~t~---~nF~~l~~~g~Y~g~~f~rv~~~ 56 (131)
+.++|.+|.+++|... ..+.+|++. |....|.+|--.
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~--~~~vkF~kVd~d 123 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAE--YPAVKFCKIRAS 123 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHH--CCCeEEEEEecc
Confidence 3899999999988442 345566654 678899999544
No 69
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=20.40 E-value=66 Score=20.19 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=12.7
Q ss_pred ceeEEEEEcCCCChH
Q 032870 17 MGSFTVELYYKHSPR 31 (131)
Q Consensus 17 ~G~i~ieL~~~~aP~ 31 (131)
.++-.||||.|.||-
T Consensus 38 ~~~ceIELY~DfApy 52 (95)
T PF13496_consen 38 NHPCEIELYYDFAPY 52 (95)
T ss_pred CCCeEEEEEeccCcc
Confidence 467889999999994
No 70
>PRK14438 acylphosphatase; Provisional
Probab=20.40 E-value=1.8e+02 Score=17.96 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=22.3
Q ss_pred EecceeEEEEEcCCCChHHHHHHHHHHhcC
Q 032870 14 ETSMGSFTVELYYKHSPRTCRNFAELSRRG 43 (131)
Q Consensus 14 ~ts~G~i~ieL~~~~aP~t~~nF~~l~~~g 43 (131)
.++.|++.|++-+ .+..++.|++.++.+
T Consensus 37 N~~dG~Vei~~qG--~~~~i~~f~~~l~~g 64 (91)
T PRK14438 37 NLPNGSVQGCFEG--EETDVAALIDWCHHG 64 (91)
T ss_pred ECCCCEEEEEEEE--CHHHHHHHHHHHhhC
Confidence 4568888888876 467899999999753
Done!