BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032871
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G5U|A Chain A, Latex Profilin Hevb8
pdb|1G5U|B Chain B, Latex Profilin Hevb8
Length = 131
Score = 229 bits (584), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 120/131 (91%)
Query: 1 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTL 60
MSWQ YVDDHL+C+I+G+ L+AAAIIGHDGSVWAQS +FPQ K +E+ +M DF+EPG+L
Sbjct: 1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSL 60
Query: 61 APTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVE 120
APTGL+LGGTKYMVIQGEPGAVIRGKKG GG+T+K+T ALIIGIYDEP+TPGQCNMIVE
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKRTGQALIIGIYDEPLTPGQCNMIVE 120
Query: 121 RLGDYLIDQGL 131
RLGDYL+DQGL
Sbjct: 121 RLGDYLLDQGL 131
>pdb|1A0K|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 131
Score = 221 bits (562), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 115/131 (87%)
Query: 1 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTL 60
MSWQ+YVDDHL+C++EGNHL+AAAI+G DGSVWAQS FPQLKP+EI GI DF EPG L
Sbjct: 1 MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60
Query: 61 APTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVE 120
APTGL+LGG KYMVIQGE GAVIRGKKGPGGVTIKKT+ AL+ G YDEPMT GQCN++VE
Sbjct: 61 APTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVE 120
Query: 121 RLGDYLIDQGL 131
RLGDYLI+ L
Sbjct: 121 RLGDYLIESEL 131
>pdb|1CQA|A Chain A, Birch Pollen Profilin
Length = 133
Score = 218 bits (556), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 102/133 (76%), Positives = 117/133 (87%), Gaps = 2/133 (1%)
Query: 1 MSWQAYVDDHLLCEI--EGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPG 58
MSWQ YVD+HL+C+I +G L+A+AI+GHDGSVWAQS +FPQ KP+EITGIM DF EPG
Sbjct: 1 MSWQTYVDEHLMCDIDGQGEELAASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPG 60
Query: 59 TLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMI 118
LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+TIKKT AL+ GIY+EP+TPGQCNM+
Sbjct: 61 HLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
Query: 119 VERLGDYLIDQGL 131
VERLGDYLIDQGL
Sbjct: 121 VERLGDYLIDQGL 133
>pdb|3NUL|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 130
Score = 213 bits (541), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 99/130 (76%), Positives = 111/130 (85%)
Query: 2 SWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLA 61
SWQ+YVDDHL C++EGNHL+AAAI+G DGSVWAQS FPQLKP+EI GI DF EPG LA
Sbjct: 1 SWQSYVDDHLXCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLA 60
Query: 62 PTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVER 121
PTGL+LGG KY VIQGE GAVIRGKKGPGGVTIKKT+ AL+ G YDEP T GQCN++VER
Sbjct: 61 PTGLFLGGEKYXVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPXTGGQCNLVVER 120
Query: 122 LGDYLIDQGL 131
LGDYLI+ L
Sbjct: 121 LGDYLIESEL 130
>pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|1F2K|B Chain B, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|2ACG|A Chain A, Acanthamoeba Castellanii Profilin Ii
Length = 125
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Query: 2 SWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLA 61
SWQ YVD +L+ ++ AAIIGHDG+ WA S F + P + N F + +
Sbjct: 1 SWQTYVDTNLVGT---GAVTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIR 56
Query: 62 PTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVER 121
G L GT+Y+ I+ + +V GKKG GV KTS A++IG+Y+E + PG +VE+
Sbjct: 57 SNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVVEK 115
Query: 122 LGDYLIDQGL 131
L DYLI QG
Sbjct: 116 LADYLIGQGF 125
>pdb|1ACF|A Chain A, Acanthamoeba Castellanii Profilin Ib
Length = 125
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
Query: 2 SWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLA 61
SWQ YVD +L+ ++ AAI+G DG+ WA S F + P + T + FN +
Sbjct: 1 SWQTYVDTNLVGT---GAVTQAAILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADAIR 56
Query: 62 PTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVER 121
G L G Y+ ++ + + I GKKG GV KTS A+++G+Y+E + PG +VE+
Sbjct: 57 AGGFDLAGVHYVTLRADDRS-IYGKKGSSGVITVKTSKAILVGVYNEKIQPGTAANVVEK 115
Query: 122 LGDYLIDQGL 131
L DYLI QG
Sbjct: 116 LADYLIGQGF 125
>pdb|1PRQ|A Chain A, Acanthamoeba Castellanii Profilin Ia
pdb|2PRF|A Chain A, Three Dimensional Solution Structure Of Acanthamoeba
Profilin I
Length = 125
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Query: 2 SWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLA 61
SWQ YVD +L+ ++ AAI+G DG+ WA S F + P + + + FN +
Sbjct: 1 SWQTYVDTNLVGT---GAVTQAAILGLDGNTWATSAGFA-VTPAQGQTLASAFNNADPIR 56
Query: 62 PTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVER 121
+G L G Y+ ++ + + I GKKG GV KTS ++++G+Y+E + PG +VE+
Sbjct: 57 ASGFDLAGVHYVTLRADDRS-IYGKKGSAGVITVKTSKSILVGVYNEKIQPGTAANVVEK 115
Query: 122 LGDYLIDQGL 131
L DYLI QG
Sbjct: 116 LADYLIGQGF 125
>pdb|3D9Y|A Chain A, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3D9Y|B Chain B, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3DAV|A Chain A, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
pdb|3DAV|B Chain B, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
Length = 127
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 1 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDG-SVWAQSENFPQLKPEEITGIMNDFNEPGT 59
MSWQAYVD LL + AAI+ G SVWA S F L P+EI G+ F +P +
Sbjct: 1 MSWQAYVDTSLLGT---GKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPS 56
Query: 60 LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIV 119
+ TG+ L G KY+ I+ E G I GK G+ T +++ Y E PG+ I
Sbjct: 57 MFGTGIILAGQKYITIRAE-GRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKIT 115
Query: 120 ERLGDYLIDQG 130
E L DYL+ G
Sbjct: 116 EALADYLVGVG 126
>pdb|1YPR|A Chain A, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1YPR|B Chain B, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1K0K|A Chain A, Yeast Profilin, Cubic Crystal Form
Length = 125
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 2 SWQAYVDDHLLCEIEGNHLSAAAIIGHDG-SVWAQSENFPQLKPEEITGIMNDFNEPGTL 60
SWQAY D+ I + A I G +VWA S L+P EI I+ F+ P L
Sbjct: 1 SWQAYTDNL----IGTGKVDKAVIYSRAGDAVWATSGGLS-LQPNEIGEIVQGFDNPAGL 55
Query: 61 APTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVE 120
GL++ G K+M+++ + + I G+ GV +T +II Y + G+ IVE
Sbjct: 56 QSNGLHIQGQKFMLLRADDRS-IYGRHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVE 114
Query: 121 RLGDYLI 127
+L DYLI
Sbjct: 115 QLADYLI 121
>pdb|2JKF|A Chain A, Plasmodium Falciparum Profilin
pdb|2JKG|A Chain A, Plasmodium Falciparum Profilin
Length = 179
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 40/158 (25%)
Query: 2 SWQAYVDDHLLCEIEGNHLSAAAIIGH-DGSVWA---QSE----NFP------------Q 41
SW +Y++D LL N +S A + DG V+A Q E NF +
Sbjct: 6 SWDSYLNDRLLA---TNQVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIE 62
Query: 42 LKPEEITGIMNDFNEPGTL--------APTGLYLGGTKYMVIQGEPGAVIRG-------- 85
++ E T NE T+ AP G++LGGTKY I E G
Sbjct: 63 VEDENGTKTTKTINEGQTILVVFNEGYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATC 122
Query: 86 KKGPGGVTIKKT-SAALIIGIYDEPMTPGQCNMIVERL 122
K GG+ + K +++ +YDE + N + L
Sbjct: 123 AKLKGGLHLVKVPGGNILVVLYDEEKEQDRGNSKIAAL 160
>pdb|3NEC|A Chain A, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|B Chain B, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|C Chain C, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|D Chain D, Crystal Structure Of Toxoplasma Gondii Profilin
Length = 166
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 61 APTGLYLGGTKYMVIQGEPG--------AVIRGKKGPGGVTIKKT-SAALIIGIYDEPMT 111
AP G+++GG KY V++ E G + + GG + KT + +++I +YDE
Sbjct: 85 APNGVWIGGQKYKVVRPEKGFEYNDCTFDITXCARSKGGAHLIKTPNGSIVIALYDEEKE 144
Query: 112 PGQCNMIVERL--GDYLIDQG 130
+ N L +YL G
Sbjct: 145 QDKGNSRTSALAFAEYLHQSG 165
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 50 IMNDFNEPGTLAPTGLYL-GGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDE 108
I ++F + +P + G + + I+ + G ++GKKG VTI K+ + +D
Sbjct: 30 ITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDA 89
Query: 109 PMTPG 113
+ PG
Sbjct: 90 LLLPG 94
>pdb|3RPN|A Chain A, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|B Chain B, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|C Chain C, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|D Chain D, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|E Chain E, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|F Chain F, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPP|A Chain A, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Apo Form
pdb|3RPP|B Chain B, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Apo Form
pdb|3RPP|C Chain C, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Apo Form
Length = 234
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 41 QLKPEEITGIMNDF--NEPGTLAPTGLYLGG 69
QL+P ITGIM D PG L GLY+
Sbjct: 38 QLRPSLITGIMKDSGNKPPGLLPRKGLYMAN 68
>pdb|1YZX|A Chain A, Crystal Structure Of Human Kappa Class Glutathione
Transferase
pdb|1YZX|B Chain B, Crystal Structure Of Human Kappa Class Glutathione
Transferase
Length = 226
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 41 QLKPEEITGIMNDF--NEPGTLAPTGLYLGG 69
QL+P ITGIM D PG L GLY+
Sbjct: 38 QLRPSLITGIMKDSGNKPPGLLPRKGLYMAN 68
>pdb|1XXO|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Pyridoxine 5'-Phosphate Oxidase At 1.8 A Resolution
pdb|1XXO|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Pyridoxine 5'-Phosphate Oxidase At 1.8 A Resolution
pdb|1Y30|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Pyridoxine 5'-Phosphate Oxidase Complexed With Flavin
Mononucleotide At 2.2 A Resolution
pdb|1Y30|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Pyridoxine 5'-Phosphate Oxidase Complexed With Flavin
Mononucleotide At 2.2 A Resolution
pdb|2AQ6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Pyridoxine 5'- Phosphate Oxidase Complexed With
Pyridoxal 5'-Phosphate At 1.7 A Resolution
pdb|2AQ6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Pyridoxine 5'- Phosphate Oxidase Complexed With
Pyridoxal 5'-Phosphate At 1.7 A Resolution
Length = 147
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 1 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDG 30
M+ Q + DD LL I GN + A I HDG
Sbjct: 1 MARQVF-DDKLLAVISGNSIGVLATIKHDG 29
>pdb|3H7U|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
Akr4c9
Length = 335
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 12 LCEIEGNHLSAAAIIGHDGSVWAQSE 37
C+ +G HLSA + +G G+ W +S+
Sbjct: 215 FCKSKGVHLSAYSPLGSPGTTWLKSD 240
>pdb|1W9A|A Chain A, Crystal Structure Of Rv1155 From Mycobacterium
Tuberculosis
pdb|1W9A|B Chain B, Crystal Structure Of Rv1155 From Mycobacterium
Tuberculosis
Length = 147
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 8 DDHLLCEIEGNHLSAAAIIGHDG 30
DD LL I GN + A I HDG
Sbjct: 7 DDKLLAVISGNSIGVLATIKHDG 29
>pdb|2CKD|A Chain A, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2CKD|B Chain B, Crystal Structure Of Ml2640 From Mycobacterium Leprae
pdb|2UYO|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae
In An Hexagonal Crystal Form
pdb|2UYQ|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae
In Complex With S-Adenosylmethionine
Length = 310
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 WQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENF 39
W+A +D ++ ++E AAA++ H S A NF
Sbjct: 54 WEAMLDPSMVAKVEAIDAEAAAMVEHMRSYQAVRTNF 90
>pdb|2A67|A Chain A, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|B Chain B, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|C Chain C, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|D Chain D, Crystal Structure Of Isochorismatase Family Protein
Length = 167
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 15 IEGNHLSAAAIIGHDGSVWA 34
++ HL+AA II H ++WA
Sbjct: 139 LDNGHLTAAQIIQHHEAIWA 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,788,644
Number of Sequences: 62578
Number of extensions: 203203
Number of successful extensions: 363
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 24
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)