Query 032871
Match_columns 131
No_of_seqs 106 out of 437
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 11:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d9y_A Profilin; yeast, actin- 100.0 4E-51 1.4E-55 283.0 14.2 126 1-131 1-127 (127)
2 3nul_A Profilin I; cytoskeleto 100.0 3.2E-49 1.1E-53 274.4 17.1 130 2-131 1-130 (130)
3 1acf_A Profilin I; protein bin 100.0 7.3E-49 2.5E-53 270.9 14.2 125 2-131 1-125 (125)
4 1ypr_A Profilin; actin-binding 100.0 1.4E-48 4.8E-53 269.5 14.5 124 2-131 1-125 (125)
5 2v8f_A Profilin-2, profilin II 100.0 4.9E-46 1.7E-50 261.1 14.2 125 1-131 1-140 (140)
6 3nec_A Profilin, inflammatory 100.0 8.2E-45 2.8E-49 260.9 10.0 126 1-131 4-166 (166)
7 2pbd_P Profilin-1, profilin I; 100.0 1.6E-43 5.3E-48 248.2 14.3 124 2-131 1-139 (139)
8 2jkg_A Profilin; proline-rich 100.0 1.8E-44 6.2E-49 259.3 9.5 126 1-131 5-171 (179)
9 3leq_A Uncharacterized protein 95.7 0.076 2.6E-06 35.5 8.1 109 7-126 8-116 (126)
10 1vet_B P14, late endosomal/lys 93.8 0.28 9.7E-06 32.7 7.1 99 19-128 18-117 (125)
11 1j3w_A Giding PROTEIN-MGLB; gl 93.1 0.36 1.2E-05 33.7 7.0 103 10-127 22-134 (163)
12 3kye_A Roadblock/LC7 domain, R 87.2 0.63 2.1E-05 32.2 3.7 110 6-127 29-139 (150)
13 3t12_B Gliding protein MGLB; G 54.9 29 0.001 23.1 5.4 99 19-128 25-132 (136)
14 3rfo_A Methionyl-tRNA formyltr 50.8 62 0.0021 24.5 7.3 37 38-78 216-252 (317)
15 1fmt_A Methionyl-tRNA FMet for 44.7 82 0.0028 23.7 7.1 64 38-108 215-279 (314)
16 2bln_A Protein YFBG; transfera 43.2 86 0.003 23.4 7.0 38 38-78 209-246 (305)
17 2jmk_A Hypothetical protein TA 40.9 59 0.002 20.6 4.7 39 91-131 67-105 (111)
18 3tqq_A Methionyl-tRNA formyltr 39.9 1E+02 0.0035 23.2 7.0 64 38-108 214-278 (314)
19 3q0i_A Methionyl-tRNA formyltr 39.6 1.1E+02 0.0037 23.1 7.1 64 38-108 219-283 (318)
20 4g29_A Secreted effector prote 36.6 27 0.00091 24.7 2.9 21 111-131 38-58 (186)
21 2c71_A Glycoside hydrolase, fa 34.5 55 0.0019 22.9 4.4 31 100-131 150-180 (216)
22 1z7e_A Protein aRNA; rossmann 31.6 1.4E+02 0.0046 24.4 6.9 38 38-78 209-246 (660)
23 1p3h_A 10 kDa chaperonin; beta 29.5 31 0.0011 21.9 2.1 17 62-78 75-91 (99)
24 3nx6_A 10KDA chaperonin; bacte 29.5 31 0.0011 21.7 2.1 17 62-78 72-88 (95)
25 2z8u_A Tata-box-binding protei 29.1 78 0.0027 22.2 4.4 36 92-131 61-96 (188)
26 1pcq_O Groes protein; chaperon 28.9 32 0.0011 21.7 2.1 17 62-78 73-89 (97)
27 3eik_A Tata-box-binding protei 28.5 1.2E+02 0.004 22.0 5.3 36 92-131 91-126 (218)
28 2k49_A UPF0339 protein SO_3888 27.4 1E+02 0.0035 20.0 4.4 55 28-85 22-79 (118)
29 1zgh_A Methionyl-tRNA formyltr 26.4 1.9E+02 0.0066 21.2 6.4 38 38-78 203-241 (260)
30 2eap_A Lymphocyte cytosolic pr 26.2 21 0.00073 22.3 0.8 12 120-131 25-36 (90)
31 1ais_A TBP, protein (tata-bind 25.8 1.2E+02 0.004 21.1 4.8 37 91-131 56-92 (182)
32 2cc0_A Acetyl-xylan esterase; 25.0 75 0.0026 21.6 3.7 19 113-131 159-177 (195)
33 2wj8_A Nucleoprotein; RNA bind 25.0 25 0.00084 27.2 1.1 29 102-130 333-361 (391)
34 4evm_A Thioredoxin family prot 24.3 1E+02 0.0034 18.4 3.9 34 19-54 104-137 (138)
35 1we3_O CPN10(groes); chaperoni 23.3 29 0.001 22.0 1.1 17 62-78 77-93 (100)
36 1mp9_A Tata-binding protein; t 23.2 1.8E+02 0.0062 20.5 5.4 22 110-131 75-96 (198)
37 2e5z_A SFRS8 protein, splicing 23.1 55 0.0019 20.3 2.3 20 111-130 20-39 (90)
38 2d0s_A Cytochrome C, cytochrom 22.7 64 0.0022 18.1 2.6 20 37-56 58-77 (79)
39 2hje_A Autoinducer 2 sensor ki 22.2 1.1E+02 0.0037 22.3 4.0 55 24-78 66-122 (221)
40 1ytb_A Protein (tata binding p 22.0 1.4E+02 0.0048 20.7 4.6 36 92-131 53-88 (180)
41 2w3z_A Putative deacetylase; P 21.0 1.2E+02 0.0042 22.6 4.4 31 100-131 275-305 (311)
No 1
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=100.00 E-value=4e-51 Score=282.96 Aligned_cols=126 Identities=42% Similarity=0.761 Sum_probs=122.6
Q ss_pred CChHHHhhhhcccccccCccceEEEEccCC-CeEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCC
Q 032871 1 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDG-SVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEP 79 (131)
Q Consensus 1 MSW~~yv~~~Lv~~~sg~~~~~aaI~g~dG-~~wA~s~~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~ 79 (131)
||||+|||++|++ ++ ++++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|.|
T Consensus 1 MSWq~Yvd~~L~~--~~-~~~~aAI~g~dG~svwA~s~gf-~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir~d- 75 (127)
T 3d9y_A 1 MSWQAYVDTSLLG--TG-KIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE- 75 (127)
T ss_dssp -CHHHHHHTTTGG--GS-SCCEEEEEETTSSCEEEECTTC-CCCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEEEC-
T ss_pred CCHHHHHHHhhcc--cC-ceeeEEEEeCCCCeEEEeCCCC-ccCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEEeC-
Confidence 9999999999999 98 999999999999 799999999 99999999999999999988899999999999999999
Q ss_pred CceEEEEcCCCcEEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 80 GAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 80 ~~~i~~kk~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
+++||+||+++|++|+||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 76 ~~~i~~kkg~~Gv~i~kT~~aivi~~y~e~~~~g~~~~~ve~ladYL~~~Gy 127 (127)
T 3d9y_A 76 GRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127 (127)
T ss_dssp SSEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEcCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999999999999999999998
No 2
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=100.00 E-value=3.2e-49 Score=274.35 Aligned_cols=130 Identities=78% Similarity=1.355 Sum_probs=123.8
Q ss_pred ChHHHhhhhcccccccCccceEEEEccCCCeEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCCCc
Q 032871 2 SWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGA 81 (131)
Q Consensus 2 SW~~yv~~~Lv~~~sg~~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~~~ 81 (131)
|||+|||++|+++.+|+++++|||+|+||++||+|++|++++|+|++.|+++|+||+.++.+||+|+|+||+++|.|+++
T Consensus 1 SWq~YVd~~L~~~~~g~~~~~aAIig~dGsvWA~s~gf~~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~~ 80 (130)
T 3nul_A 1 SWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGA 80 (130)
T ss_dssp CHHHHHHHTTSCCBTTBCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEETTT
T ss_pred CHHHHHHhhhcccccCCcEeeEEEEeCCCCEEEcCCCcccCCHHHHHHHHHhccCchhhccCCEEECCeEEEEEEeCCCc
Confidence 89999998999833324999999999999999999999999999999999999999999999999999999999998778
Q ss_pred eEEEEcCCCcEEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 82 VIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 82 ~i~~kk~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
+||+||+++|++|+||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 81 ~i~~kkg~~Gv~i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 81 VIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 130 (130)
T ss_dssp EEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999998
No 3
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=100.00 E-value=7.3e-49 Score=270.95 Aligned_cols=125 Identities=41% Similarity=0.789 Sum_probs=122.5
Q ss_pred ChHHHhhhhcccccccCccceEEEEccCCCeEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCCCc
Q 032871 2 SWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGA 81 (131)
Q Consensus 2 SW~~yv~~~Lv~~~sg~~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~~~ 81 (131)
|||+|||++|++ +| ++++|||+++||++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|.| ++
T Consensus 1 SWq~yvd~~L~~--~g-~~~~aAIig~dGsvwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~i~~d-~~ 75 (125)
T 1acf_A 1 SWQTYVDTNLVG--TG-AVTQAAILGLDGNTWATSAGF-AVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRAD-DR 75 (125)
T ss_dssp CHHHHHHTTTGG--GT-SCSEEEEEETTSCEEEECTTC-CCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEES-SS
T ss_pred ChHHHHHhhhhh--CC-CcceEEEEcCCCCEEEecCCC-ccCHHHHHHHHHHhcCcchhhcCCeEECCEEEEEEEec-Cc
Confidence 899999988999 99 999999999999999999999 99999999999999999888899999999999999999 89
Q ss_pred eEEEEcCCCcEEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 82 VIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 82 ~i~~kk~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
+|++|++++|++++||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 76 ~i~~kk~~~Gv~i~kT~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~gy 125 (125)
T 1acf_A 76 SIYGKKGSSGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125 (125)
T ss_dssp EEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEeecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999998
No 4
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=100.00 E-value=1.4e-48 Score=269.54 Aligned_cols=124 Identities=36% Similarity=0.693 Sum_probs=121.5
Q ss_pred ChHHHhhhhcccccccCccceEEEEccCC-CeEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCCC
Q 032871 2 SWQAYVDDHLLCEIEGNHLSAAAIIGHDG-SVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPG 80 (131)
Q Consensus 2 SW~~yv~~~Lv~~~sg~~~~~aaI~g~dG-~~wA~s~~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~~ 80 (131)
|||+|||+ |++ +| ++++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|.| +
T Consensus 1 SWq~yvd~-L~~--~g-~~~~aAI~g~DG~svwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gl~l~G~KY~~i~~d-~ 74 (125)
T 1ypr_A 1 SWQAYTDN-LIG--TG-KVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRAD-D 74 (125)
T ss_dssp CHHHHHHH-HHH--TS-SCSEEEEEETTSCCEEEEESCC-CCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEEC-S
T ss_pred ChHHHHHH-Hhc--CC-CccEEEEEeCCCCcEEEECCCC-ccCHHHHHHHHHhccCcchhccCCeEECCEEEEEEecC-C
Confidence 89999996 999 98 999999999999 999999999 99999999999999999888899999999999999999 8
Q ss_pred ceEEEEcCCCcEEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 81 AVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 81 ~~i~~kk~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
++||+|++++|++++||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 75 ~~i~~kk~~~Gi~i~kT~~aivI~~y~e~~~~g~~~~~ve~ladYL~~~gy 125 (125)
T 1ypr_A 75 RSIYGRHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVEQLADYLIGVQY 125 (125)
T ss_dssp SEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEecCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999998
No 5
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=100.00 E-value=4.9e-46 Score=261.14 Aligned_cols=125 Identities=33% Similarity=0.574 Sum_probs=119.7
Q ss_pred CC-hHHHhhhhcccccccCccceEEEEccCC--CeEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEE
Q 032871 1 MS-WQAYVDDHLLCEIEGNHLSAAAIIGHDG--SVWAQSEN--FPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVI 75 (131)
Q Consensus 1 MS-W~~yv~~~Lv~~~sg~~~~~aaI~g~dG--~~wA~s~~--f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~ 75 (131)
|| ||+|||+ |++ +| +|++|||+|+|| ++||+|++ |++++|+|++.|+ . +||+.++.+||+|+|+||+++
T Consensus 1 MS~Wq~yvd~-L~~--~g-~v~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~l~G~Ky~~i 74 (140)
T 2v8f_A 1 MAGWQSYVDN-LMC--DG-CCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIV-G-KDREGFFTNGLTLGAKKCSVI 74 (140)
T ss_dssp -CTTHHHHHH-HHT--TS-CEEEEEEEECSSSCSEEEECTTSSGGGCCHHHHHHHH-S-SCSSHHHHHCEEETTEEEEEE
T ss_pred CchHHHHHHH-Hhc--cC-CcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-CCccccccCCeEECCEEEEEE
Confidence 99 9999996 999 98 999999999999 99999999 9889999999999 7 899888899999999999999
Q ss_pred Ee----CCCce--EEEEcCCCc----EEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 76 QG----EPGAV--IRGKKGPGG----VTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 76 r~----d~~~~--i~~kk~~~G----~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
|. |++++ |++|++++| ++|+||+++|||++|+++++|++|+++||+|||||+++||
T Consensus 75 r~~l~~d~~~~~di~~kk~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 140 (140)
T 2v8f_A 75 RDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRDSGF 140 (140)
T ss_dssp EEETTSTTTCEEEEEECCCSSSCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ecccccCCCceEEEEEecCCCCCceeEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99 76788 999999999 9999999999999999999999999999999999999998
No 6
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=100.00 E-value=8.2e-45 Score=260.94 Aligned_cols=126 Identities=29% Similarity=0.535 Sum_probs=118.1
Q ss_pred CC-hHHHhhhhcccccccCccceEEEEc-cCCCeEEecCCC------------------------CCCCHHHHHHHHHhc
Q 032871 1 MS-WQAYVDDHLLCEIEGNHLSAAAIIG-HDGSVWAQSENF------------------------PQLKPEEITGIMNDF 54 (131)
Q Consensus 1 MS-W~~yv~~~Lv~~~sg~~~~~aaI~g-~dG~~wA~s~~f------------------------~~i~~~E~~~l~~~f 54 (131)
|| ||+|||++|++ ++ +|++|||++ +||++||+|++| ++++|+|++.|+++|
T Consensus 4 MS~Wq~YVd~~L~~--~g-~v~~AAI~g~~DG~vWA~s~~~~~~w~~~~~~~y~~~v~~~~g~~~~~~~~~E~~~i~~~f 80 (166)
T 3nec_A 4 MSDWDPVVKEWLVD--TG-YCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHEEDTIGEDGNACGKVSINEASTIKAAV 80 (166)
T ss_dssp -CCCHHHHHHHHTT--TS-SCSEEEEEETTTCCEEEEEETTSCHHHHHCCCCEEEEEECTTSCEEEEEEECHHHHHHHHH
T ss_pred ccHHHHHHHHHhhc--cC-ceeEEEEEecCCCCEEeecCCCCcccccccccccccccccccccccccCCHHHHHHHHHHh
Confidence 99 99999989999 88 999999999 699999999999 256999999999999
Q ss_pred CCCCCCCccceEEcCeEEEEEEeCCC--------ceEEEEcCCCcEEEEecCC-EEEEEEeCCC--CCcchHHHHHHHHH
Q 032871 55 NEPGTLAPTGLYLGGTKYMVIQGEPG--------AVIRGKKGPGGVTIKKTSA-ALIIGIYDEP--MTPGQCNMIVERLG 123 (131)
Q Consensus 55 ~~~~~~~~~Gi~~~g~Ky~v~r~d~~--------~~i~~kk~~~G~~i~kt~~-~ivI~~~~~~--~~~~~~~~~v~~la 123 (131)
+++ ++++||+|+|+||+++|.|++ ++|++||+++|++|+||++ +||||+|+++ ++|++|+++|++||
T Consensus 81 ~~~--~~~~Gl~lgG~KY~~ir~d~~~~~~~~~~~~i~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~la 158 (166)
T 3nec_A 81 DDG--SAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFA 158 (166)
T ss_dssp HHS--CCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHH
T ss_pred hcC--CccCCeEEeCeEEEEEEecCCccccccceeEEEeccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHH
Confidence 884 478999999999999999844 6899999999999999999 9999999999 99999999999999
Q ss_pred HHHHhCCC
Q 032871 124 DYLIDQGL 131 (131)
Q Consensus 124 ~yL~~~gy 131 (131)
|||+++||
T Consensus 159 dYL~~~GY 166 (166)
T 3nec_A 159 EYLHQSGY 166 (166)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 99999998
No 7
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=100.00 E-value=1.6e-43 Score=248.20 Aligned_cols=124 Identities=30% Similarity=0.505 Sum_probs=118.7
Q ss_pred C-hHHHhhhhcccccccCccceEEEEccCC--CeEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEE
Q 032871 2 S-WQAYVDDHLLCEIEGNHLSAAAIIGHDG--SVWAQSEN--FPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQ 76 (131)
Q Consensus 2 S-W~~yv~~~Lv~~~sg~~~~~aaI~g~dG--~~wA~s~~--f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r 76 (131)
| ||+|||+ |++ +| +|++|||+|+|| ++||+|++ |++++|+|++.|+ . +||+.++.+||+|+|+||+++|
T Consensus 1 s~Wq~Yvd~-L~~--~g-~~~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~lgG~Ky~~ir 74 (139)
T 2pbd_P 1 AGWNAYIDN-LMA--DG-TCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-G-KDRSSFYVNGLTLGGQKCSVIR 74 (139)
T ss_dssp CCSHHHHHH-HHT--TS-CEEEEEEEESSSSCEEEEECTTSSGGGCCHHHHHHHH-S-SCCSTHHHHCEEETTEEEEEEE
T ss_pred CchHHHHHH-Hhc--cC-CcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-cCcccccccCeEECCEEEEEEe
Confidence 5 9999996 999 98 999999999999 99999999 9889999999999 6 8888888999999999999999
Q ss_pred e----CCCceE--EEEcCCCc----EEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 77 G----EPGAVI--RGKKGPGG----VTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 77 ~----d~~~~i--~~kk~~~G----~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
. |++++| ++|++++| ++++||+++|||++|+++++|++|+++|++|||||+++||
T Consensus 75 ~~~~~d~~~~id~~~kk~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 75 DSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp EETTCTTTCEEEEEECCSTTCCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccCCCcEEeeeeccCCCCCceEEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9 757888 99999999 9999999999999999999999999999999999999998
No 8
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=100.00 E-value=1.8e-44 Score=259.31 Aligned_cols=126 Identities=30% Similarity=0.532 Sum_probs=118.4
Q ss_pred CChHHHhhhhcccccccCccceEEEEcc-CCCeEEecC------------------CCC-CC----------CHHHHHHH
Q 032871 1 MSWQAYVDDHLLCEIEGNHLSAAAIIGH-DGSVWAQSE------------------NFP-QL----------KPEEITGI 50 (131)
Q Consensus 1 MSW~~yv~~~Lv~~~sg~~~~~aaI~g~-dG~~wA~s~------------------~f~-~i----------~~~E~~~l 50 (131)
||||+||+++|++ +| +|++|||+++ ||++||+|+ +|+ ++ +|+|+..|
T Consensus 5 mSWq~YVd~~Ll~--tG-~v~~AaI~g~~DG~vwA~s~~~~e~~~~~~~w~~~~k~~f~~~v~~e~g~~~~~~~~E~~~I 81 (179)
T 2jkg_A 5 YSWDSYLNDRLLA--TN-QVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIEVEDENGTKTTKTINEGQTI 81 (179)
T ss_dssp CCHHHHHHHHTGG--GS-SCSEEEEEETTTCCEEEEEESSCTTSTTCCGGGGTCCCCEEEEEECTTCCEEEEEECHHHHH
T ss_pred ccHHHHHHHhhhh--cC-CEehheeecccCCCEEEecCccccccccccchhhhccCCchhhhccccCccccCCHHHHHHH
Confidence 9999999999999 99 9999999999 999999999 784 57 89999999
Q ss_pred HHhcCCCCCCCccceEEcCeEEEEEEeCCC--------ceEEEEcCCCcEEEEec-CCEEEEEEeCCC--CCcchHHHHH
Q 032871 51 MNDFNEPGTLAPTGLYLGGTKYMVIQGEPG--------AVIRGKKGPGGVTIKKT-SAALIIGIYDEP--MTPGQCNMIV 119 (131)
Q Consensus 51 ~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~~--------~~i~~kk~~~G~~i~kt-~~~ivI~~~~~~--~~~~~~~~~v 119 (131)
+.+|++ .++++||+|+|+||+++|.|++ ++||+||+++|++|+|| +++||||+|+++ ++|++|+++|
T Consensus 82 ~~~f~~--~~~~~Gv~lgG~KY~~i~~d~d~~~~~~~~~~i~gkKgkgGv~ivKT~~qaiVIg~YdE~k~~~~g~c~~~v 159 (179)
T 2jkg_A 82 LVVFNE--GYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLKGGLHLVKVPGGNILVVLYDEEKEQDRGNSKIAA 159 (179)
T ss_dssp HHHHHH--SCCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEETTTEEEEEEEEGGGTCCHHHHHHHH
T ss_pred HHHHhc--CCCCCCEEECCEEEEEEEecCCccccCcceeEEEEecCCCcEEEEEECCCeEEEEEecCCCCcChHHHHHHH
Confidence 999977 4779999999999999999977 88999999999999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCC
Q 032871 120 ERLGDYLIDQGL 131 (131)
Q Consensus 120 ~~la~yL~~~gy 131 (131)
++|||||+++||
T Consensus 160 e~LadYL~~~Gy 171 (179)
T 2jkg_A 160 LTFAKELAESSQ 171 (179)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHcCc
Confidence 999999999997
No 9
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=95.66 E-value=0.076 Score=35.51 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=59.0
Q ss_pred hhhhcccccccCccceEEEEccCCCeEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCCCceEEEE
Q 032871 7 VDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGK 86 (131)
Q Consensus 7 v~~~Lv~~~sg~~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~~~~i~~k 86 (131)
+-+.|+.. . +.+.++++++.||-+.+++.+.+...++-+.++...+-.-......-+..+..+-++++.+ +..++-.
T Consensus 8 lL~~l~~~-v-~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~-~G~l~v~ 84 (126)
T 3leq_A 8 LLTGLVDR-V-AEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMG-KGYLILT 84 (126)
T ss_dssp HHHHHHHH-C-TTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECS-SCEEEEE
T ss_pred HHHHHHhc-C-CCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeC-CCEEEEE
Confidence 33467631 2 3899999999999999998766222445566666555332211223344566677777777 4333322
Q ss_pred cCCCcEEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHH
Q 032871 87 KGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYL 126 (131)
Q Consensus 87 k~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL 126 (131)
.-+. .+++....+.+.+.|...-.+.++++.+
T Consensus 85 ~ag~--------~a~L~vla~~~a~lG~v~~em~~~v~ri 116 (126)
T 3leq_A 85 AAGP--------GAHLVVLTRQGADVGVVAYQMNMLVKKI 116 (126)
T ss_dssp ESST--------TEEEEEEECTTCCHHHHHHHHHHHHHHC
T ss_pred EeCC--------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 2222 3566667788888777665555554443
No 10
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=93.83 E-value=0.28 Score=32.69 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=66.6
Q ss_pred ccceEEEEccCCCeEEecCCCCCCCHHHHHHHHHhcCCCCCCCcc-ceEEcCeEEEEEEeCCCceEEEEcCCCcEEEEec
Q 032871 19 HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPT-GLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT 97 (131)
Q Consensus 19 ~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~l~~~f~~~~~~~~~-Gi~~~g~Ky~v~r~d~~~~i~~kk~~~G~~i~kt 97 (131)
.+.++++++.||-+.|++.+ .....+-+.++...+-.-...... =+.-++.+..++..+ +.. +++...
T Consensus 18 gv~~a~lvs~DGllia~s~~-~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~-~G~---------l~i~~a 86 (125)
T 1vet_B 18 GVQSTLLLNNEGSLLAYSGY-GDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCM-EGR---------VAITRV 86 (125)
T ss_dssp TEEEEEEECTTCCEEEEEEC-CSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEET-TEE---------EEEEEE
T ss_pred CceEEEEECCCCCeEEecCC-CCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeC-CCE---------EEEEEc
Confidence 79999999999999998755 366777788887765220000000 011245566666666 322 223333
Q ss_pred CCEEEEEEeCCCCCcchHHHHHHHHHHHHHh
Q 032871 98 SAALIIGIYDEPMTPGQCNMIVERLGDYLID 128 (131)
Q Consensus 98 ~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~ 128 (131)
..+++..+.+.+.+.|....-+.++++||.+
T Consensus 87 ~~a~L~Vla~~~a~lGlv~~~m~~lv~~L~~ 117 (125)
T 1vet_B 87 ANLLLCMYAKETVGFGMLKAKAQALVQYLEE 117 (125)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHHhh
Confidence 4677788889999999999999999999865
No 11
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=93.13 E-value=0.36 Score=33.69 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=60.3
Q ss_pred hcccccccCccceEEEEccCCCeEEe-----cCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCCCceEE
Q 032871 10 HLLCEIEGNHLSAAAIIGHDGSVWAQ-----SENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIR 84 (131)
Q Consensus 10 ~Lv~~~sg~~~~~aaI~g~dG~~wA~-----s~~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~~~~i~ 84 (131)
.|+. .. .+.+|++++.||-+.++ +... . ..+-+.++...+-.-......-+.-++.+-.+++.+ +..++
T Consensus 22 ~L~~--v~-Gv~~avlvs~DGl~ia~~~~~~~~~~-~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~-~g~l~ 95 (163)
T 1j3w_A 22 ETLR--ET-GARYALLIDRKGFVLAHKEALWAPKP-P-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGE-RMGLY 95 (163)
T ss_dssp HHHH--HH-CCSEEEEEETTSCEEEEEECTTSCCC-S-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECS-SCEEE
T ss_pred HHhc--cC-CceEEEEEcCCCCEEEeecccccCCC-C-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeC-CcEEE
Confidence 5665 33 79999999999999998 6666 5 677666666544321111111121233444455555 33332
Q ss_pred EEcCCCcEEEEecC-CEEEEEEeCCCCCcchHHHH----HHHHHHHHH
Q 032871 85 GKKGPGGVTIKKTS-AALIIGIYDEPMTPGQCNMI----VERLGDYLI 127 (131)
Q Consensus 85 ~kk~~~G~~i~kt~-~~ivI~~~~~~~~~~~~~~~----v~~la~yL~ 127 (131)
+..-. .++++...+.+.+.|...-. ++++++.|.
T Consensus 96 ---------v~~~g~~a~L~Vla~~~a~lG~v~~~m~~~v~~l~~~L~ 134 (163)
T 1j3w_A 96 ---------VDEAGEHALLVLVFDETAPLGKVKLHGKRASEALARIAE 134 (163)
T ss_dssp ---------EEESSTTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------EEEeCCCeEEEEEeCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 22322 37888889999888876554 445555554
No 12
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=87.17 E-value=0.63 Score=32.18 Aligned_cols=110 Identities=10% Similarity=0.103 Sum_probs=59.2
Q ss_pred HhhhhcccccccCccceEEEEccCCCeEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceE-EcCeEEEEEEeCCCceEE
Q 032871 6 YVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLY-LGGTKYMVIQGEPGAVIR 84 (131)
Q Consensus 6 yv~~~Lv~~~sg~~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~-~~g~Ky~v~r~d~~~~i~ 84 (131)
|+-+.|+. .-+.+.+|++++.||- .+++.+.+...++-+.++...+..-......-+- .+..+=++++.+ +..++
T Consensus 29 wlL~~L~~--~vpGV~~AvvvS~DGL-la~S~~l~~~dae~LAA~aSgl~SLa~~aa~~~~~~G~vrqv~VE~~-~G~l~ 104 (150)
T 3kye_A 29 WLMSGLVQ--RVPHTTSAVLLSCDGL-VKSVHGLDPDSADHMAALASGLYSLGRSAGIRFGDGGDVRQVVVELD-STLLF 104 (150)
T ss_dssp HHHHHHHH--HSTTEEEEEEEETTSC-EEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEES-SEEEE
T ss_pred HHHHHHHh--cCCCeeEEEEEcCCCC-EeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEeC-CcEEE
Confidence 34446663 2138999999999999 7877666333444555555433221000011111 344566666666 33333
Q ss_pred EEcCCCcEEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHH
Q 032871 85 GKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLI 127 (131)
Q Consensus 85 ~kk~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~ 127 (131)
-.. -...+++...-+.+.+.+...--+.++++.+.
T Consensus 105 v~~--------aG~ga~LaVla~~~adlGlv~~em~~lv~rig 139 (150)
T 3kye_A 105 VST--------AGSGTCLAVLAGREADAAVLGYEMAMLVKSVR 139 (150)
T ss_dssp EEE--------EETTEEEEEEEETTSCHHHHHHHHHHHHHHHG
T ss_pred EEE--------cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 222 12245566666777787776666665555543
No 13
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=54.94 E-value=29 Score=23.13 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=53.6
Q ss_pred ccceEEEEccCCCeEEecCC-C--CCCCHHHHHHHHHh-cCCCCCCCccceEEcCeEEEEEEeCCCceEEEEcCCCcEEE
Q 032871 19 HLSAAAIIGHDGSVWAQSEN-F--PQLKPEEITGIMND-FNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTI 94 (131)
Q Consensus 19 ~~~~aaI~g~dG~~wA~s~~-f--~~i~~~E~~~l~~~-f~~~~~~~~~Gi~~~g~Ky~v~r~d~~~~i~~kk~~~G~~i 94 (131)
.+..+.++|.||.+.++... | .++..+-+..+... |.-.. .-+=.++...| +.++-.-.+..+++
T Consensus 25 gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~---~la~~Lge~~~--------~~l~~eGe~~~i~i 93 (136)
T 3t12_B 25 GARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQ---ALAKLLGEARF--------QEEVHQGERMGLYV 93 (136)
T ss_dssp CCSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHH---HHHHHTTCSCC--------CCEEEECSSCEEEE
T ss_pred CCeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHH---HHHHHHCCCch--------hHheEEcCcCCEEE
Confidence 69999999999998887632 2 14556656655432 11100 00000111111 11221223334556
Q ss_pred EecC-CEEEEEEeCCCCCcchH----HHHHHHHHHHHHh
Q 032871 95 KKTS-AALIIGIYDEPMTPGQC----NMIVERLGDYLID 128 (131)
Q Consensus 95 ~kt~-~~ivI~~~~~~~~~~~~----~~~v~~la~yL~~ 128 (131)
.... .+|++..++...+-|-. .++++++++-|.+
T Consensus 94 ~~vg~~~iLvvifd~~~~LG~Vrl~~kka~~~l~~il~~ 132 (136)
T 3t12_B 94 DEAGEHALLVLVFDETAPLGKVKLHGKAAAAALAAIAEE 132 (136)
T ss_dssp EESSTTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCEEEEEEeCCCCCceEeeehHHHHHHHHHHHHHH
Confidence 6664 59999999999887765 4555555555544
No 14
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=50.82 E-value=62 Score=24.47 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeC
Q 032871 38 NFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d 78 (131)
+| +-+.+|+..++.+|. | .+.-=.+++|+++.+.++.
T Consensus 216 dw-~~~a~~i~~~iRa~~-p--~Pga~~~~~g~~~ki~~a~ 252 (317)
T 3rfo_A 216 DW-TKTGEEVYNHIRGLN-P--WPVAYTTLAGQVVKVWWGE 252 (317)
T ss_dssp CT-TSCHHHHHHHHHHTT-T--TTCCEEEETTEEEEEEEEE
T ss_pred CH-HHhHHHHHHHHhccC-C--CCceEEEECCeEEEEEEEE
Confidence 57 668999999999995 3 2233356899999988864
No 15
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=44.73 E-value=82 Score=23.71 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCC-CceEEEEcCCCcEEEEecCCEEEEEEeCC
Q 032871 38 NFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEP-GAVIRGKKGPGGVTIKKTSAALIIGIYDE 108 (131)
Q Consensus 38 ~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~-~~~i~~kk~~~G~~i~kt~~~ivI~~~~~ 108 (131)
+| +-+.+|+..++.+|. |- +..=.+++|+++.+.++.. +.. ....-|-++...+..++|+..++
T Consensus 215 dw-~~~a~~i~~~iRa~~-p~--Pga~~~~~g~~~ki~~a~~~~~~---~~~~pG~i~~~~~~~~~V~~~dg 279 (314)
T 1fmt_A 215 DW-SLSAAQLERCIRAFN-PW--PMSWLEIEGQPVKVWKASVIDTA---TNAAPGTILEANKQGIQVATGDG 279 (314)
T ss_dssp CT-TSBHHHHHHHHHHTT-TT--TCEEEEETTEEEEEEEEEEECCC---CCSCTTBEEEEETTEEEEECSBS
T ss_pred cc-cccHHHHHHHHhccC-CC--CceEEEECCEEEEEEEEEEccCC---CCCCCceEEEecCCEEEEEeCCC
Confidence 57 678999999999996 31 2223467999999988641 100 01123444444445555555443
No 16
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=43.24 E-value=86 Score=23.45 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeC
Q 032871 38 NFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d 78 (131)
+| +-+.+|+..++.+|.+|- +..=.+++|+++.+.++.
T Consensus 209 dw-~~~a~~i~~~iRa~~~p~--Pga~~~~~g~~~ki~~a~ 246 (305)
T 2bln_A 209 EW-HKPASVLHNMVRAVADPW--PGAFSYVGNQKFTVWSSR 246 (305)
T ss_dssp CT-TSBHHHHHHHHHHTCTTS--CCEEEEETTEEEEEEEEE
T ss_pred CC-cCCHHHHHHHHhccCCCC--CceEEEECCEEEEEEEEE
Confidence 57 668999999999997652 223346799999988864
No 17
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=40.92 E-value=59 Score=20.56 Aligned_cols=39 Identities=8% Similarity=0.284 Sum_probs=26.1
Q ss_pred cEEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 91 GVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 91 G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
|+++....+-++=..|.+ .-++..+.++..++-.+..||
T Consensus 67 GFvviN~dKK~mSvsFsd--~~~~~K~~i~ei~kkykd~Gy 105 (111)
T 2jmk_A 67 GFVVVNADKKLMSVSFSD--IDENMKKVIKATAEKFKNKGF 105 (111)
T ss_dssp EEEEEETTTTEEEEEECS--CCTTHHHHHHHHHHHGGGGCC
T ss_pred EEEEEecCCeEEEEEeeh--hhhhHHHHHHHHHHHhhcCCc
Confidence 555554444333334443 457788899999999999998
No 18
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=39.92 E-value=1e+02 Score=23.18 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCC-CceEEEEcCCCcEEEEecCCEEEEEEeCC
Q 032871 38 NFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEP-GAVIRGKKGPGGVTIKKTSAALIIGIYDE 108 (131)
Q Consensus 38 ~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~-~~~i~~kk~~~G~~i~kt~~~ivI~~~~~ 108 (131)
+| +-+.+|+..++.+|.. .+..=.+++|+++.+.++.. +.. ....-|-++...+..++|+..++
T Consensus 214 dw-~~~a~~I~~~iRa~~P---~Pga~~~~~g~~~ki~~a~~~~~~---~~~~pG~v~~~~~~~l~V~~~dg 278 (314)
T 3tqq_A 214 DW-RKSAVEIARQVRAFNP---TPIAFTYFEGQPMRIWRATVVDEK---TDFEPGVLVDADKKGISIAAGSG 278 (314)
T ss_dssp CT-TSBHHHHHHHHHHTTT---TTCCEEEETTEEEEEEEEEEECCC---CSSCTTCEEEEETTEEEEECSBS
T ss_pred cc-cCCHHHHHHHHhccCC---CCceEEEECCEEEEEEEEEEecCC---CCCCCcEEEEecCCEEEEEECCC
Confidence 57 6689999999999973 22333678999999888641 110 01233444444445555554443
No 19
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=39.60 E-value=1.1e+02 Score=23.09 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeCC-CceEEEEcCCCcEEEEecCCEEEEEEeCC
Q 032871 38 NFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEP-GAVIRGKKGPGGVTIKKTSAALIIGIYDE 108 (131)
Q Consensus 38 ~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d~-~~~i~~kk~~~G~~i~kt~~~ivI~~~~~ 108 (131)
+| +-+.+|+..++.+|. | .+..=.+++|+++.+.+++. +.. ....-|-++...+..++|+..++
T Consensus 219 dw-~~~a~~I~~~iRa~~-P--~Pga~~~~~g~~~ki~~a~~~~~~---~~~~pG~i~~~~~~~~~V~~~dg 283 (318)
T 3q0i_A 219 NW-SDAATHIERCIRAFN-P--WPMSHFEVAENSIKVWQARVETRA---VTQTPGTIIQADKSGIYVATGQD 283 (318)
T ss_dssp CT-TSBHHHHHHHHHHTT-T--TTCCEEEETTEEEEEEEEEEECCC---CCSCTTBEEEEETTEEEEECSBS
T ss_pred cc-CCCHHHHHHHHhccC-C--CCceEEEECCEEEEEEEEEEecCC---CCCCCcEEEEEcCCEEEEEECCc
Confidence 57 678999999999996 3 22334578999999988641 100 01233444444455555554443
No 20
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=36.60 E-value=27 Score=24.67 Aligned_cols=21 Identities=19% Similarity=0.703 Sum_probs=19.4
Q ss_pred CcchHHHHHHHHHHHHHhCCC
Q 032871 111 TPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 111 ~~~~~~~~v~~la~yL~~~gy 131 (131)
..++|...++.++++|++.||
T Consensus 38 P~~~Ce~s~~~V~~~Lk~~gy 58 (186)
T 4g29_A 38 PVGQCESLMTPVSNFMNEKGF 58 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhCCC
Confidence 578999999999999999997
No 21
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=34.53 E-value=55 Score=22.92 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 100 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 100 ~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
.||+ +.+....+....++...+-++|++.||
T Consensus 150 ~IiL-~Hd~~~~~~~t~~al~~ii~~l~~~Gy 180 (216)
T 2c71_A 150 TIIL-LHDVQPEPHPTPEALDIIIPTLKSRGY 180 (216)
T ss_dssp BEEE-EESCCSSSCCHHHHHHHHHHHHHHTTC
T ss_pred cEEE-EECCCCChHHHHHHHHHHHHHHHHCCC
Confidence 3444 344433345678899999999999998
No 22
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=31.61 E-value=1.4e+02 Score=24.44 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=28.8
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCeEEEEEEeC
Q 032871 38 NFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~l~~~f~~~~~~~~~Gi~~~g~Ky~v~r~d 78 (131)
+| +-+.+|+..++.+|.+|- +..=.+++|+++.+.++.
T Consensus 209 dw-~~~a~~i~~~ira~~~p~--p~a~~~~~~~~~~i~~~~ 246 (660)
T 1z7e_A 209 EW-HKPASVLHNMVRAVADPW--PGAFSYVGNQKFTVWSSR 246 (660)
T ss_dssp CT-TSBHHHHHHHHHHTCTTS--CCEEEEETTEEEEEEECC
T ss_pred CC-CCCHHHHHHHHhccCCCC--CceEEEECCEEEEEEEEE
Confidence 57 668999999999997652 233346799999998874
No 23
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=29.48 E-value=31 Score=21.88 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=15.1
Q ss_pred ccceEEcCeEEEEEEeC
Q 032871 62 PTGLYLGGTKYMVIQGE 78 (131)
Q Consensus 62 ~~Gi~~~g~Ky~v~r~d 78 (131)
.+-+.++|++|+++|.+
T Consensus 75 Gtevk~dgeey~i~re~ 91 (99)
T 1p3h_A 75 GTEIKYNGEEYLILSAR 91 (99)
T ss_dssp CEEEEETTEEEEEEEGG
T ss_pred CeEEEECCEEEEEEEhH
Confidence 56699999999999987
No 24
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=29.47 E-value=31 Score=21.69 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=15.1
Q ss_pred ccceEEcCeEEEEEEeC
Q 032871 62 PTGLYLGGTKYMVIQGE 78 (131)
Q Consensus 62 ~~Gi~~~g~Ky~v~r~d 78 (131)
.+-+.++|++|+++|.+
T Consensus 72 Gtevk~dg~ey~i~re~ 88 (95)
T 3nx6_A 72 GSSYKSEGVEYKVLRED 88 (95)
T ss_dssp SEEEEETTEEEEEEEGG
T ss_pred CeEEEECCEEEEEEEHH
Confidence 56799999999999987
No 25
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=29.07 E-value=78 Score=22.22 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 92 VTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 92 ~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
+.|..+.+.++.|-. ...++..++.++++.|++.||
T Consensus 61 ~lIF~SGKiv~TGAk----S~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 61 LLIFRSGKVNCTGAK----SKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp EEECTTSEEEEEEES----SHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCeEEEecCC----CHHHHHHHHHHHHHHHHhcCC
Confidence 445555555555443 446899999999999999986
No 26
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=28.91 E-value=32 Score=21.71 Aligned_cols=17 Identities=0% Similarity=0.102 Sum_probs=15.1
Q ss_pred ccceEEcCeEEEEEEeC
Q 032871 62 PTGLYLGGTKYMVIQGE 78 (131)
Q Consensus 62 ~~Gi~~~g~Ky~v~r~d 78 (131)
.+-+.++|++|+++|.+
T Consensus 73 Gtevk~dgeey~i~re~ 89 (97)
T 1pcq_O 73 VKSEKIDNEEVLIMSES 89 (97)
T ss_dssp CEEEEETTEEEEEEEGG
T ss_pred CeEEEECCEEEEEEEhH
Confidence 56699999999999987
No 27
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=28.54 E-value=1.2e+02 Score=21.96 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=26.2
Q ss_pred EEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 92 VTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 92 ~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
+.|..+.+.++.|- ....++..++.++++.|++.||
T Consensus 91 ~LIF~SGKiV~TGA----kS~e~a~~A~~ki~~~L~~lG~ 126 (218)
T 3eik_A 91 ALIFASGKMVITGA----KSEKSSRMAAQRYAKIIHKLGF 126 (218)
T ss_dssp EEECTTSEEEEEEE----SSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCeEEEEec----CCHHHHHHHHHHHHHHHHHcCC
Confidence 34455555555443 2568999999999999999986
No 28
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=27.39 E-value=1e+02 Score=19.97 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=30.8
Q ss_pred cCCCeEEecCCCCCCCHHHHHHHHHhcCC--CC-CCCccceEEcCeEEEEEEeCCCceEEE
Q 032871 28 HDGSVWAQSENFPQLKPEEITGIMNDFNE--PG-TLAPTGLYLGGTKYMVIQGEPGAVIRG 85 (131)
Q Consensus 28 ~dG~~wA~s~~f~~i~~~E~~~l~~~f~~--~~-~~~~~Gi~~~g~Ky~v~r~d~~~~i~~ 85 (131)
.+|.+.++|+++ . +......=+..++. +. ....--..-+|+-|+.|++. +.-+.|
T Consensus 22 ~NgeiI~sSe~Y-~-sk~~a~~gI~sVk~na~~~~~fe~~~~~~gk~yF~Lka~-NgqvIg 79 (118)
T 2k49_A 22 GNGEVILTSELY-T-GKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAA-NHQIIG 79 (118)
T ss_dssp SSSCEEEECCCB-S-SHHHHHHHHHHHHHHTTCGGGEEEEEETTTEEEEEEECT-TCCEEE
T ss_pred CCCCEEEECCCc-C-CHHHHHHHHHHHHHhCcccceEEEEEccCCCEEEEEEcC-CCcEEE
Confidence 488999999988 3 55555554444432 11 12233334456666777766 444443
No 29
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=26.41 E-value=1.9e+02 Score=21.19 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHhcC-CCCCCCccceEEcCeEEEEEEeC
Q 032871 38 NFPQLKPEEITGIMNDFN-EPGTLAPTGLYLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~l~~~f~-~~~~~~~~Gi~~~g~Ky~v~r~d 78 (131)
+| +-+.+|+..++.+|. +|- +..=.+++|+++.+.++.
T Consensus 203 dw-~~~a~~I~~~IRa~~~~p~--PgA~t~~~g~~~ki~~a~ 241 (260)
T 1zgh_A 203 SP-DFDLEKIYDYIRMLDGEGY--PRAFIKYGKYRLEFSRAS 241 (260)
T ss_dssp CT-TSCHHHHHHHHHHTCSTTC--CCCEEEETTEEEEEEEEE
T ss_pred Cc-ccCHHHHHHHHHhhCCCCC--CcEEEEECCEEEEEEEEE
Confidence 57 678999999999997 442 222346799999998874
No 30
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.16 E-value=21 Score=22.33 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.0
Q ss_pred HHHHHHHHhCCC
Q 032871 120 ERLGDYLIDQGL 131 (131)
Q Consensus 120 ~~la~yL~~~gy 131 (131)
+.+|+||++.||
T Consensus 25 ~~VadWLkk~g~ 36 (90)
T 2eap_A 25 DSLADYFKKLNY 36 (90)
T ss_dssp TTHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 468999999887
No 31
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=25.85 E-value=1.2e+02 Score=21.15 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=26.2
Q ss_pred cEEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 91 GVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 91 G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
-+.|..+.+.++-|. -...++..++.++++.|++.||
T Consensus 56 t~lIF~SGKiv~TGa----kS~~~~~~a~~~i~~~L~~lG~ 92 (182)
T 1ais_A 56 ALLIFSSGKLVVTGA----KSVQDIERAVAKLAQKLKSIGV 92 (182)
T ss_dssp EEEECTTSEEEEEEE----SSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCeEEEecC----CCHHHHHHHHHHHHHHHHHcCC
Confidence 344555555555443 2457999999999999999986
No 32
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=25.01 E-value=75 Score=21.64 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHhCCC
Q 032871 113 GQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 113 ~~~~~~v~~la~yL~~~gy 131 (131)
.+..++...+-++|++.||
T Consensus 159 ~~t~~al~~ii~~l~~~Gy 177 (195)
T 2cc0_A 159 ANTLAAIPRIAQTLAGKGL 177 (195)
T ss_dssp HHHHHHHHHHHHHHHHTTE
T ss_pred hhHHHHHHHHHHHHHHCCC
Confidence 4677899999999999997
No 33
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=24.95 E-value=25 Score=27.19 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHhCC
Q 032871 102 IIGIYDEPMTPGQCNMIVERLGDYLIDQG 130 (131)
Q Consensus 102 vI~~~~~~~~~~~~~~~v~~la~yL~~~g 130 (131)
|||+|.+...-.....|.+..|+.|+++|
T Consensus 333 IiG~YrG~~~N~eLf~AA~~YA~~Lkenn 361 (391)
T 2wj8_A 333 IMGEYRGTPRNQDLYDAAKAYAEQLKENG 361 (391)
T ss_dssp CCSSCCCCCSCHHHHHHHHHHHHHHTTCC
T ss_pred eeeeccCCCCChHHHHHHHHHHHHHHhcC
Confidence 56777777777777778888888887765
No 34
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=24.35 E-value=1e+02 Score=18.37 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=25.5
Q ss_pred ccceEEEEccCCCeEEecCCCCCCCHHHHHHHHHhc
Q 032871 19 HLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDF 54 (131)
Q Consensus 19 ~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~l~~~f 54 (131)
.+-...|++.+|.+.....|. .+++++..+++.+
T Consensus 104 ~~P~~~lid~~G~i~~~~~g~--~~~~~l~~~l~~l 137 (138)
T 4evm_A 104 SYPTQAFIDKEGKLVKTHPGF--MEKDAILQTLKEL 137 (138)
T ss_dssp SSSEEEEECTTCCEEEEEESC--CCHHHHHHHHHHC
T ss_pred cCCeEEEECCCCcEEEeecCC--CcHHHHHHHHHhh
Confidence 455678899999887766666 5789988887654
No 35
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=23.31 E-value=29 Score=22.04 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=15.0
Q ss_pred ccceEEcCeEEEEEEeC
Q 032871 62 PTGLYLGGTKYMVIQGE 78 (131)
Q Consensus 62 ~~Gi~~~g~Ky~v~r~d 78 (131)
.+-+.++|++|+++|.+
T Consensus 77 Gtevk~dgeeyli~re~ 93 (100)
T 1we3_O 77 GTEIEIDGEEYVILSER 93 (100)
T ss_dssp SEEEECSSCEEEEECTT
T ss_pred CeEEEECCEEEEEEEhH
Confidence 56699999999999987
No 36
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=23.21 E-value=1.8e+02 Score=20.46 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.4
Q ss_pred CCcchHHHHHHHHHHHHHhCCC
Q 032871 110 MTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 110 ~~~~~~~~~v~~la~yL~~~gy 131 (131)
-...++..++.++++.|++.||
T Consensus 75 kS~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 75 KSTDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCC
Confidence 3567999999999999999986
No 37
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.13 E-value=55 Score=20.34 Aligned_cols=20 Identities=20% Similarity=0.665 Sum_probs=17.6
Q ss_pred CcchHHHHHHHHHHHHHhCC
Q 032871 111 TPGQCNMIVERLGDYLIDQG 130 (131)
Q Consensus 111 ~~~~~~~~v~~la~yL~~~g 130 (131)
.|.+....++++|+|..++|
T Consensus 20 PPpdir~iIdktA~fVaknG 39 (90)
T 2e5z_A 20 PPPDVQPVIDKLAEYVARNG 39 (90)
T ss_dssp CCTTTHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHcc
Confidence 46678999999999999987
No 38
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=22.73 E-value=64 Score=18.12 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHhcCC
Q 032871 37 ENFPQLKPEEITGIMNDFNE 56 (131)
Q Consensus 37 ~~f~~i~~~E~~~l~~~f~~ 56 (131)
|.|..++++|+..|+..+..
T Consensus 58 p~~~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 58 PPHPQVAEADIEKIVRWVLT 77 (79)
T ss_dssp CCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 34657899999999987754
No 39
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=22.17 E-value=1.1e+02 Score=22.28 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=39.5
Q ss_pred EEEccCCCeEEe-cCCCCCCCHHHHHHHHHhcCCCCCC-CccceEEcCeEEEEEEeC
Q 032871 24 AIIGHDGSVWAQ-SENFPQLKPEEITGIMNDFNEPGTL-APTGLYLGGTKYMVIQGE 78 (131)
Q Consensus 24 aI~g~dG~~wA~-s~~f~~i~~~E~~~l~~~f~~~~~~-~~~Gi~~~g~Ky~v~r~d 78 (131)
=|...||-.|-- +..|..+++++++.|..-......- ...-.+..|.+|+++|..
T Consensus 66 FI~~~~~~~WdDgNa~FyGi~~~~L~~L~~~v~~~~~Wh~~~~~s~~g~~~lLvRR~ 122 (221)
T 2hje_A 66 FLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRRV 122 (221)
T ss_dssp EEECSSSEEEECSGGGGGTCCHHHHHHHHHHCCSSSSCEEEEEEETTEEEEEEEEEE
T ss_pred EEEeCCceEEECCCccccccCHHHHHHHHhhhcccCceEEEEeccCCCceEEEEEcc
Confidence 455568889984 2335588999999999976554322 345667889999999964
No 40
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=22.01 E-value=1.4e+02 Score=20.71 Aligned_cols=36 Identities=8% Similarity=0.210 Sum_probs=25.8
Q ss_pred EEEEecCCEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 92 VTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 92 ~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
+.|..+.+.++-|-- ...++..++.++++.|++.|+
T Consensus 53 ~lIF~SGKiv~TGak----s~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 53 ALIFASGKMVVTGAK----SEDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp EEECTTSEEEEEEES----SHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCeEEEEecC----CHHHHHHHHHHHHHHHHHcCC
Confidence 445555555554432 567899999999999998875
No 41
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=21.00 E-value=1.2e+02 Score=22.57 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=23.0
Q ss_pred EEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032871 100 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 100 ~ivI~~~~~~~~~~~~~~~v~~la~yL~~~gy 131 (131)
..||-+++.. ......++..++-++|++.||
T Consensus 275 g~IIL~Hd~~-g~~~t~~aL~~iI~~Lk~~Gy 305 (311)
T 2w3z_A 275 VQVVLMHDIS-EKTITLASLPQIIRYYKDRGY 305 (311)
T ss_dssp EEEEEEECST-TCHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCC-ChhhHHHHHHHHHHHHHHCCC
Confidence 3455666632 235678899999999999998
Done!