BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032873
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 47/73 (64%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
P VGIIM SD DLPVM AA L +FG+ YEI I+ H+ YA +A+ERGI++II
Sbjct: 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73
Query: 119 VGDGVEAHLSGTL 131
G G AHL G +
Sbjct: 74 AGAGGAAHLPGMV 86
>pdb|3LP6|A Chain A, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|B Chain B, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|C Chain C, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|D Chain D, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
Length = 174
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
P VG+IM SD D PVM DAA L++F +P E++++ H+ + SYA A RG+++II
Sbjct: 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVII 67
Query: 119 VGDGVEAHLSGTL 131
G G AHL G +
Sbjct: 68 AGAGGAAHLPGMV 80
>pdb|4GRD|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|C Chain C, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|D Chain D, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
Length = 173
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%)
Query: 49 ENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108
E + AP+VG++M S D VM A L +FGVPYE K++ H+ E YA
Sbjct: 3 EIQTAHTHSAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEK 62
Query: 109 AKERGIKIIIVGDGVEAHLSGTL 131
A+ERG++ II G G AHL G L
Sbjct: 63 ARERGLRAIIAGAGGAAHLPGML 85
>pdb|1XMP|A Chain A, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|B Chain B, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|C Chain C, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|D Chain D, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|E Chain E, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|F Chain F, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|G Chain G, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|H Chain H, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
Length = 170
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 13 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 72
Query: 120 GDGVEAHLSGTL 131
G G AHL G +
Sbjct: 73 GAGGAAHLPGMV 84
>pdb|4B4K|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|E Chain E, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|F Chain F, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|G Chain G, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|H Chain H, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|I Chain I, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|J Chain J, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|K Chain K, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|L Chain L, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
Length = 181
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 24 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 83
Query: 120 GDGVEAHLSGTL 131
G G AHL G +
Sbjct: 84 GAGGAAHLPGMV 95
>pdb|2FW1|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FW1|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FWJ|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
pdb|2FWJ|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
Length = 183
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSG 129
+II G G AHL G
Sbjct: 79 NVIIAGAGGAAHLPG 93
>pdb|1U11|A Chain A, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
pdb|1U11|B Chain B, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
Length = 182
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 18 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 77
Query: 115 KIIIVGDGVEAHLSG 129
+II G G AHL G
Sbjct: 78 NVIIAGAGGAAHLPG 92
>pdb|2FWA|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
pdb|2FWA|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
Length = 183
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSG 129
+II G G A+L G
Sbjct: 79 NVIIAGAGGAANLPG 93
>pdb|2FW6|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW6|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW7|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW7|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWP|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
pdb|2FWP|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
Length = 183
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ ++ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSANRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSG 129
+II G G AHL G
Sbjct: 79 NVIIAGAGGAAHLPG 93
>pdb|3OOW|A Chain A, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|B Chain B, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|C Chain C, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|D Chain D, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|E Chain E, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|F Chain F, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|G Chain G, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|H Chain H, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 166
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
VG+I S D + L + G+ YE +++ H+ + YA +AKERG+K+II G
Sbjct: 8 VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 67
Query: 121 DGVEAHLSGTL 131
G AHL G +
Sbjct: 68 AGGAAHLPGXV 78
>pdb|2FWB|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWB|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSG 129
+II G G A L G
Sbjct: 79 NVIIAGAGGAAFLPG 93
>pdb|2FW9|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW9|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ + YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAFRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSG 129
+II G G AHL G
Sbjct: 79 NVIIAGAGGAAHLPG 93
>pdb|3OPQ|A Chain A, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|B Chain B, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|C Chain C, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|D Chain D, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|E Chain E, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|F Chain F, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|G Chain G, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|H Chain H, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure
Length = 163
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
VG+I S D + L + G+ YE +++ H+ + YA +AKERG+K+II G
Sbjct: 5 VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 64
Query: 121 DGVEAHLSGTL 131
G AHL G +
Sbjct: 65 AGGAAHLPGXV 75
>pdb|2FWI|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
pdb|2FWI|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
Length = 183
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ + YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSADRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSG 129
+II G G AHL G
Sbjct: 79 NVIIAGAGGAAHLPG 93
>pdb|2NSH|A Chain A, E. Coli Pure H45q Mutant Complexed With Nitro-Air
pdb|2NSJ|A Chain A, E. Coli Pure H45q Mutant Complexed With Cair
Length = 169
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+M S D M AA VP+ ++++ + + S+A SA+E G ++II G
Sbjct: 10 VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAQRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGTL 131
G AHL G +
Sbjct: 70 AGGAAHLPGMI 80
>pdb|2NSL|A Chain A, E. Coli Pure H45n Mutant Complexed With Cair
Length = 169
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+M S D M AA VP+ ++++ ++ + S+A SA+E G ++II G
Sbjct: 10 VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSANRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGTL 131
G AHL G +
Sbjct: 70 AGGAAHLPGMI 80
>pdb|2FW8|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW8|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIII 118
+II
Sbjct: 79 NVII 82
>pdb|3KUU|A Chain A, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|B Chain B, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|C Chain C, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|D Chain D, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
Length = 174
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
+ I+ S D AA L+ VP+ ++++ H+ S+A A+ G+ +II G
Sbjct: 15 IAIVXGSKSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAG 74
Query: 121 DGVEAHLSGTL 131
+G AHL G L
Sbjct: 75 NGGAAHLPGXL 85
>pdb|1QCZ|A Chain A, Crystal Structure Of E. Coli Pure, An Unusual Mutase That
Catalyzes The Conversion Of N5-carboxyaminoimidazole
Ribonucleotide (n5-cair) To 4-carboxyaminoimidazole
Ribonucleotide (cair) In The Purine Biosynthetic Pathway
Length = 169
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 10 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGTL 131
G AHL G +
Sbjct: 70 AGGAAHLPGXI 80
>pdb|2ATE|A Chain A, Structure Of The Complex Of Pure With Nitroair
Length = 169
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 10 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGTL 131
G AHL G +
Sbjct: 70 AGGAAHLPGXI 80
>pdb|1D7A|A Chain A, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|B Chain B, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|C Chain C, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|D Chain D, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|L Chain L, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|M Chain M, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|N Chain N, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|O Chain O, Crystal Structure Of E. Coli Pure-Mononucleotide Complex
Length = 161
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 4 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 63
Query: 121 DGVEAHLSGTL 131
G AHL G +
Sbjct: 64 AGGAAHLPGXI 74
>pdb|3TRH|A Chain A, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|B Chain B, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|C Chain C, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|D Chain D, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|E Chain E, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|F Chain F, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|G Chain G, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|H Chain H, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|I Chain I, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|J Chain J, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|K Chain K, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|L Chain L, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|M Chain M, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|N Chain N, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|O Chain O, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|P Chain P, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
Length = 169
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
V I+ SD DL A L G+P+E IL H+ KE + + +A RG + I
Sbjct: 8 FVAILXGSDSDLSTXETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFI 66
>pdb|3ORS|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|E Chain E, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|F Chain F, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|G Chain G, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|H Chain H, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
Length = 163
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 56 TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 115
++A V +IM S D +M ++ L F +PYE +++ H+ K + +A A+ERGI
Sbjct: 1 SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60
Query: 116 IIIVGDGVEAHLSGTL 131
III G G AHL G +
Sbjct: 61 IIIAGAGGAAHLPGMV 76
>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Methanocaldococcus
Jannaschii
Length = 157
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
++ IIM S+ DL + A L +FGV +E+++ H+ + ++K + I
Sbjct: 1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIA 57
Query: 120 GDGVEAHLSGTL 131
G+ AHL G +
Sbjct: 58 IAGLAAHLPGVV 69
>pdb|3RGG|A Chain A, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|B Chain B, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|C Chain C, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|D Chain D, Crystal Structure Of Treponema Denticola Pure Bound To Air
Length = 159
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104
P+V I+M S D+ A L FG+ Y I+I H+ + +S
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVS 48
>pdb|3RG8|A Chain A, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|B Chain B, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|C Chain C, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|D Chain D, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|E Chain E, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|F Chain F, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|G Chain G, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|H Chain H, Crystal Structure Of Treponema Denticola Pure
Length = 159
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104
P+V I+M S D+ A L FG+ Y I+I H+ + +S
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVS 48
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 77 AARTLSDFGVPYEIKILPPH 96
AAR S+FGV I +LPPH
Sbjct: 522 AARIQSEFGVTAAIDLLPPH 541
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 83 DFGVPYE---------IKILPPHQNCKEALSYALSAKERGIKI 116
DFG YE + I P KE S L A+ER +KI
Sbjct: 218 DFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKI 260
>pdb|1CCW|B Chain B, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CCW|D Chain D, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CB7|B Chain B, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
pdb|1CB7|D Chain D, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
pdb|1I9C|B Chain B, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
pdb|1I9C|D Chain D, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
Length = 483
Score = 26.2 bits (56), Expect = 6.0, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 84 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122
FG P ++PP + ++ AL A E+G+K I VG G
Sbjct: 216 FG-PLTGTLVPPSMSNAVGITEALLAAEQGVKNITVGYG 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,746,578
Number of Sequences: 62578
Number of extensions: 139864
Number of successful extensions: 242
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 33
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)