Query 032873
Match_columns 131
No_of_seqs 201 out of 1042
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:00:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0041 PurE Phosphoribosylcar 100.0 2.5E-34 5.4E-39 222.1 9.2 73 59-131 3-75 (162)
2 PLN02948 phosphoribosylaminoim 100.0 1.3E-30 2.9E-35 231.4 11.3 116 5-131 368-483 (577)
3 TIGR01162 purE phosphoribosyla 100.0 1.2E-29 2.7E-34 195.6 7.5 71 61-131 1-71 (156)
4 PF00731 AIRC: AIR carboxylase 100.0 7.4E-29 1.6E-33 190.0 5.2 73 59-131 1-73 (150)
5 KOG2835 Phosphoribosylamidoimi 99.2 1.3E-12 2.8E-17 112.5 0.3 110 5-131 172-281 (373)
6 COG1691 NCAIR mutase (PurE)-re 99.2 5E-11 1.1E-15 97.9 7.4 74 54-131 113-190 (254)
7 KOG2835 Phosphoribosylamidoimi 97.4 0.00011 2.3E-09 64.0 2.6 83 9-130 224-307 (373)
8 cd08170 GlyDH Glycerol dehydro 96.0 0.032 6.8E-07 46.7 7.6 67 59-125 23-89 (351)
9 cd08550 GlyDH-like Glycerol_de 95.9 0.035 7.6E-07 46.5 7.4 66 60-125 24-89 (349)
10 PRK10076 pyruvate formate lyas 95.6 0.046 1E-06 43.7 6.7 86 18-118 105-211 (213)
11 cd08185 Fe-ADH1 Iron-containin 95.5 0.066 1.4E-06 45.4 7.6 67 59-125 26-95 (380)
12 cd08183 Fe-ADH2 Iron-containin 95.1 0.099 2.1E-06 44.3 7.4 65 59-125 23-87 (374)
13 cd08551 Fe-ADH iron-containing 95.0 0.11 2.5E-06 43.6 7.3 67 59-125 24-92 (370)
14 cd08171 GlyDH-like2 Glycerol d 94.9 0.11 2.3E-06 43.6 7.0 67 59-125 23-90 (345)
15 PRK09423 gldA glycerol dehydro 94.9 0.15 3.2E-06 43.1 7.8 66 60-125 31-96 (366)
16 cd08195 DHQS Dehydroquinate sy 94.8 0.2 4.4E-06 41.9 8.5 67 59-125 25-97 (345)
17 cd08175 G1PDH Glycerol-1-phosp 94.7 0.15 3.2E-06 42.7 7.4 65 60-125 25-92 (348)
18 PRK00843 egsA NAD(P)-dependent 94.5 0.23 4.9E-06 41.9 8.1 64 60-125 36-99 (350)
19 TIGR01357 aroB 3-dehydroquinat 94.5 0.27 5.9E-06 41.0 8.4 67 59-125 21-93 (344)
20 cd08186 Fe-ADH8 Iron-containin 94.4 0.15 3.3E-06 43.4 6.8 66 60-125 28-96 (383)
21 cd08194 Fe-ADH6 Iron-containin 94.3 0.16 3.4E-06 43.1 6.8 66 60-125 25-92 (375)
22 cd08182 HEPD Hydroxyethylphosp 94.3 0.19 4.2E-06 42.3 7.2 64 60-125 25-89 (367)
23 cd08176 LPO Lactadehyde:propan 94.3 0.15 3.2E-06 43.3 6.4 66 60-125 30-97 (377)
24 PF00763 THF_DHG_CYH: Tetrahyd 94.2 0.16 3.5E-06 36.9 5.7 53 59-111 31-84 (117)
25 PF00465 Fe-ADH: Iron-containi 94.1 0.14 3.1E-06 42.9 6.1 65 60-125 23-90 (366)
26 cd08178 AAD_C C-terminal alcoh 94.0 0.18 3.9E-06 43.1 6.6 67 59-125 22-90 (398)
27 TIGR02638 lactal_redase lactal 93.9 0.2 4.2E-06 42.7 6.5 66 60-125 31-98 (379)
28 cd08187 BDH Butanol dehydrogen 93.9 0.18 3.8E-06 42.9 6.3 67 59-125 29-98 (382)
29 PRK00002 aroB 3-dehydroquinate 93.7 0.48 1E-05 40.0 8.5 66 60-125 33-104 (358)
30 cd03028 GRX_PICOT_like Glutare 93.7 0.47 1E-05 32.4 7.0 58 60-119 9-70 (90)
31 cd08197 DOIS 2-deoxy-scyllo-in 93.6 0.5 1.1E-05 40.4 8.5 67 59-125 24-96 (355)
32 cd08192 Fe-ADH7 Iron-containin 93.6 0.28 6E-06 41.4 6.9 66 60-125 26-93 (370)
33 cd08181 PPD-like 1,3-propanedi 93.5 0.27 5.9E-06 41.5 6.7 67 59-125 26-95 (357)
34 cd08173 Gro1PDH Sn-glycerol-1- 93.5 0.49 1.1E-05 39.5 8.2 64 60-125 27-90 (339)
35 cd08188 Fe-ADH4 Iron-containin 93.4 0.32 7E-06 41.3 7.0 66 60-125 30-97 (377)
36 PF06258 Mito_fiss_Elm1: Mitoc 93.3 0.6 1.3E-05 39.3 8.5 92 6-116 111-211 (311)
37 PRK10624 L-1,2-propanediol oxi 93.3 0.3 6.5E-06 41.6 6.7 66 60-125 32-99 (382)
38 cd08189 Fe-ADH5 Iron-containin 93.3 0.34 7.4E-06 41.0 7.0 66 60-125 28-95 (374)
39 cd08179 NADPH_BDH NADPH-depend 93.3 0.34 7.4E-06 41.1 6.9 66 60-125 25-93 (375)
40 PF10096 DUF2334: Uncharacteri 92.8 0.42 9.1E-06 38.7 6.6 52 68-119 12-74 (243)
41 PRK15454 ethanol dehydrogenase 92.7 0.28 6.2E-06 42.2 5.8 66 60-125 51-118 (395)
42 cd08193 HVD 5-hydroxyvalerate 92.7 0.36 7.9E-06 40.8 6.3 66 60-125 28-95 (376)
43 TIGR00365 monothiol glutaredox 92.6 0.88 1.9E-05 31.8 7.2 60 59-120 12-75 (97)
44 cd08199 EEVS 2-epi-5-epi-valio 92.6 0.9 1.9E-05 38.7 8.6 66 59-124 27-99 (354)
45 cd08190 HOT Hydroxyacid-oxoaci 92.6 0.62 1.4E-05 40.2 7.7 66 60-125 25-92 (414)
46 cd07766 DHQ_Fe-ADH Dehydroquin 92.5 0.76 1.6E-05 37.8 7.8 65 60-125 25-90 (332)
47 cd08549 G1PDH_related Glycerol 92.0 0.77 1.7E-05 38.4 7.4 65 60-125 26-92 (332)
48 PRK09860 putative alcohol dehy 91.8 0.48 1E-05 40.5 6.0 66 60-125 33-100 (383)
49 cd03786 GT1_UDP-GlcNAc_2-Epime 91.6 0.96 2.1E-05 36.4 7.2 64 60-123 1-65 (363)
50 PRK15138 aldehyde reductase; P 91.0 0.58 1.2E-05 40.2 5.8 65 59-125 30-97 (387)
51 cd08191 HHD 6-hydroxyhexanoate 90.8 1.2 2.6E-05 38.0 7.4 64 60-125 24-91 (386)
52 COG0695 GrxC Glutaredoxin and 90.6 1.2 2.7E-05 30.1 6.0 52 67-119 7-60 (80)
53 PLN02834 3-dehydroquinate synt 90.5 1.7 3.7E-05 38.2 8.3 66 59-124 101-174 (433)
54 PF04392 ABC_sub_bind: ABC tra 90.0 0.93 2E-05 36.6 5.9 64 61-124 2-70 (294)
55 cd00860 ThrRS_anticodon ThrRS 89.6 2.7 5.9E-05 27.4 7.0 57 60-121 3-59 (91)
56 cd08177 MAR Maleylacetate redu 89.5 0.99 2.1E-05 37.7 5.8 65 60-125 25-89 (337)
57 PRK11914 diacylglycerol kinase 89.2 2 4.2E-05 35.1 7.2 60 60-122 10-73 (306)
58 cd03027 GRX_DEP Glutaredoxin ( 89.0 4.4 9.6E-05 26.0 7.6 54 61-118 3-57 (73)
59 cd08180 PDD 1,3-propanediol de 88.3 2.1 4.6E-05 35.6 7.0 65 60-125 24-90 (332)
60 PF13407 Peripla_BP_4: Peripla 88.1 7 0.00015 29.7 9.2 64 61-125 1-67 (257)
61 COG2984 ABC-type uncharacteriz 87.6 2.1 4.6E-05 37.0 6.7 64 61-124 33-99 (322)
62 PRK10653 D-ribose transporter 87.3 8.6 0.00019 30.2 9.6 65 57-123 25-92 (295)
63 PRK01372 ddl D-alanine--D-alan 87.0 1.7 3.7E-05 34.9 5.5 35 57-91 3-42 (304)
64 PRK10014 DNA-binding transcrip 87.0 6.1 0.00013 31.6 8.6 91 28-122 36-129 (342)
65 cd01988 Na_H_Antiporter_C The 86.7 3.9 8.5E-05 27.8 6.6 53 72-127 56-108 (132)
66 COG1454 EutG Alcohol dehydroge 86.1 3.7 7.9E-05 36.0 7.4 66 60-125 31-98 (377)
67 PRK10703 DNA-binding transcrip 86.0 4.2 9E-05 32.6 7.2 92 27-122 30-124 (341)
68 PF01380 SIS: SIS domain SIS d 85.9 6.5 0.00014 27.1 7.4 61 60-121 6-87 (131)
69 cd08169 DHQ-like Dehydroquinat 85.7 5.8 0.00013 33.6 8.3 65 59-125 24-95 (344)
70 cd06318 PBP1_ABC_sugar_binding 85.3 9.6 0.00021 29.2 8.7 59 61-121 2-63 (282)
71 cd01452 VWA_26S_proteasome_sub 85.1 6.6 0.00014 31.0 7.8 63 59-121 108-173 (187)
72 PRK10586 putative oxidoreducta 84.6 3.5 7.6E-05 35.2 6.6 63 60-125 36-98 (362)
73 cd08172 GlyDH-like1 Glycerol d 84.5 2.4 5.1E-05 35.5 5.4 64 60-125 25-88 (347)
74 TIGR03702 lip_kinase_YegS lipi 84.4 4.6 9.9E-05 32.9 6.9 58 62-122 4-61 (293)
75 PRK13055 putative lipid kinase 84.3 3.5 7.6E-05 34.4 6.3 55 66-122 14-68 (334)
76 PRK13805 bifunctional acetalde 84.2 3.7 8.1E-05 38.8 7.1 65 59-125 481-551 (862)
77 cd01539 PBP1_GGBP Periplasmic 84.1 11 0.00023 30.1 8.7 62 60-121 1-65 (303)
78 cd08184 Fe-ADH3 Iron-containin 83.8 5.1 0.00011 34.1 7.2 63 60-125 27-93 (347)
79 cd01391 Periplasmic_Binding_Pr 83.8 8.7 0.00019 27.7 7.5 62 61-122 2-67 (269)
80 cd06305 PBP1_methylthioribose_ 83.4 12 0.00027 28.3 8.5 62 60-123 1-65 (273)
81 cd03174 DRE_TIM_metallolyase D 83.2 6.8 0.00015 30.6 7.2 49 70-118 113-164 (265)
82 PRK10423 transcriptional repre 83.1 9.8 0.00021 30.1 8.1 91 27-121 27-120 (327)
83 TIGR02417 fruct_sucro_rep D-fr 83.1 10 0.00022 30.1 8.3 90 28-121 32-124 (327)
84 cd03418 GRX_GRXb_1_3_like Glut 83.1 8.4 0.00018 24.3 6.4 49 69-119 8-58 (75)
85 PRK13337 putative lipid kinase 83.1 3.7 8.1E-05 33.6 5.9 54 66-122 13-66 (304)
86 COG1597 LCB5 Sphingosine kinas 83.0 4.5 9.7E-05 33.7 6.4 55 65-122 13-67 (301)
87 cd06321 PBP1_ABC_sugar_binding 83.0 14 0.0003 28.2 8.7 60 61-120 2-64 (271)
88 cd06273 PBP1_GntR_like_1 This 82.8 14 0.0003 28.0 8.6 58 61-120 2-62 (268)
89 cd01542 PBP1_TreR_like Ligand- 82.6 14 0.00031 27.8 8.5 59 61-121 2-63 (259)
90 PRK14190 bifunctional 5,10-met 82.4 5.8 0.00013 33.5 6.9 53 59-111 34-87 (284)
91 cd07943 DRE_TIM_HOA 4-hydroxy- 82.2 5.9 0.00013 31.9 6.7 61 62-123 102-163 (263)
92 cd04795 SIS SIS domain. SIS (S 82.2 10 0.00022 24.3 6.7 31 88-118 49-79 (87)
93 cd00859 HisRS_anticodon HisRS 81.9 11 0.00023 23.9 6.6 56 60-120 3-58 (91)
94 PF00462 Glutaredoxin: Glutare 81.8 5.2 0.00011 24.7 5.0 48 69-118 7-55 (60)
95 cd05212 NAD_bind_m-THF_DH_Cycl 81.7 2.7 5.9E-05 31.7 4.3 56 60-127 30-85 (140)
96 cd08174 G1PDH-like Glycerol-1- 81.2 6.4 0.00014 32.7 6.7 60 59-125 26-87 (331)
97 PF02882 THF_DHG_CYH_C: Tetrah 81.0 1.8 3.8E-05 33.5 3.1 59 60-129 37-95 (160)
98 PLN02958 diacylglycerol kinase 80.8 11 0.00024 33.6 8.4 89 19-122 84-177 (481)
99 PRK11303 DNA-binding transcrip 80.4 14 0.0003 29.3 8.1 91 27-121 32-125 (328)
100 cd06296 PBP1_CatR_like Ligand- 80.3 22 0.00048 26.9 8.9 60 61-122 2-64 (270)
101 cd06283 PBP1_RegR_EndR_KdgR_li 79.9 21 0.00046 26.8 8.7 59 61-121 2-63 (267)
102 PRK10727 DNA-binding transcrip 79.3 16 0.00035 29.4 8.2 91 27-121 30-123 (343)
103 PRK00861 putative lipid kinase 78.8 6.9 0.00015 31.8 6.1 53 66-122 14-66 (300)
104 PRK14169 bifunctional 5,10-met 78.7 9.1 0.0002 32.3 6.8 53 59-111 32-85 (282)
105 PRK14177 bifunctional 5,10-met 78.6 8.7 0.00019 32.5 6.7 53 59-111 35-88 (284)
106 cd06280 PBP1_LacI_like_4 Ligan 78.3 24 0.00051 26.9 8.6 59 61-121 2-63 (263)
107 PRK14177 bifunctional 5,10-met 78.0 3.2 6.9E-05 35.1 3.9 51 73-128 142-217 (284)
108 PRK14173 bifunctional 5,10-met 77.9 5.6 0.00012 33.7 5.4 53 59-111 31-84 (287)
109 PRK14167 bifunctional 5,10-met 77.7 3.6 7.9E-05 34.9 4.2 53 59-111 33-86 (297)
110 PRK14181 bifunctional 5,10-met 77.7 5.5 0.00012 33.7 5.3 53 59-111 28-81 (287)
111 PRK06203 aroB 3-dehydroquinate 77.4 12 0.00027 32.4 7.5 67 59-125 43-123 (389)
112 PRK14180 bifunctional 5,10-met 77.4 3.1 6.7E-05 35.1 3.7 51 73-128 141-216 (282)
113 cd01538 PBP1_ABC_xylose_bindin 77.4 25 0.00054 27.5 8.7 60 61-122 2-64 (288)
114 cd06286 PBP1_CcpB_like Ligand- 77.2 26 0.00057 26.4 8.5 58 61-120 2-62 (260)
115 PRK14186 bifunctional 5,10-met 77.2 10 0.00022 32.3 6.7 53 59-111 34-87 (297)
116 PRK13054 lipid kinase; Reviewe 77.1 16 0.00035 29.8 7.8 60 60-122 5-65 (300)
117 PRK14987 gluconate operon tran 77.0 16 0.00036 29.1 7.6 90 27-120 34-126 (331)
118 PRK14166 bifunctional 5,10-met 77.0 7.4 0.00016 32.8 5.8 52 59-110 32-84 (282)
119 cd06311 PBP1_ABC_sugar_binding 76.8 27 0.00059 26.7 8.6 46 75-120 19-67 (274)
120 TIGR02181 GRX_bact Glutaredoxi 76.6 14 0.00031 23.7 6.0 50 68-119 6-56 (79)
121 TIGR00147 lipid kinase, YegS/R 76.5 10 0.00022 30.6 6.3 60 60-122 3-66 (293)
122 cd01541 PBP1_AraR Ligand-bindi 76.5 28 0.0006 26.6 8.5 60 61-122 2-64 (273)
123 cd06323 PBP1_ribose_binding Pe 76.5 22 0.00048 26.7 7.9 57 61-119 2-61 (268)
124 cd06292 PBP1_LacI_like_10 Liga 76.4 27 0.00059 26.5 8.4 58 61-120 2-62 (273)
125 cd06293 PBP1_LacI_like_11 Liga 76.3 29 0.00062 26.4 8.5 58 61-120 2-62 (269)
126 PRK08195 4-hyroxy-2-oxovalerat 76.2 22 0.00047 30.3 8.6 54 64-117 107-161 (337)
127 PRK14193 bifunctional 5,10-met 76.2 4.6 9.9E-05 34.1 4.4 53 59-111 34-87 (284)
128 cd06298 PBP1_CcpA_like Ligand- 76.1 31 0.00067 26.0 8.7 59 61-121 2-63 (268)
129 PF03129 HGTP_anticodon: Antic 76.1 13 0.00028 24.6 5.9 55 61-120 2-59 (94)
130 cd06275 PBP1_PurR Ligand-bindi 76.0 30 0.00064 26.2 8.5 59 61-121 2-63 (269)
131 cd06302 PBP1_LsrB_Quorum_Sensi 75.9 28 0.00061 27.5 8.7 59 61-121 2-64 (298)
132 cd06300 PBP1_ABC_sugar_binding 75.8 31 0.00067 26.3 8.6 36 85-120 32-67 (272)
133 PF13528 Glyco_trans_1_3: Glyc 75.7 16 0.00035 28.9 7.3 58 57-124 191-261 (318)
134 cd01537 PBP1_Repressors_Sugar_ 75.6 29 0.00063 25.5 9.0 62 61-124 2-66 (264)
135 cd00858 GlyRS_anticodon GlyRS 75.5 15 0.00032 26.2 6.3 57 59-121 27-85 (121)
136 cd01540 PBP1_arabinose_binding 75.3 24 0.00051 27.2 7.9 40 77-119 21-60 (289)
137 PRK14168 bifunctional 5,10-met 75.3 4.2 9.1E-05 34.6 4.0 51 73-128 144-223 (297)
138 cd05008 SIS_GlmS_GlmD_1 SIS (S 75.1 24 0.00053 24.3 8.2 59 63-121 3-81 (126)
139 PRK14180 bifunctional 5,10-met 75.1 12 0.00025 31.7 6.5 53 59-111 33-86 (282)
140 PRK14175 bifunctional 5,10-met 74.9 5 0.00011 33.9 4.3 53 59-111 34-87 (286)
141 PRK14187 bifunctional 5,10-met 74.9 4.1 8.9E-05 34.6 3.8 51 73-128 143-218 (294)
142 cd00738 HGTP_anticodon HGTP an 74.8 16 0.00034 23.7 5.9 57 60-121 3-62 (94)
143 PLN02616 tetrahydrofolate dehy 74.7 3.9 8.5E-05 35.9 3.7 51 73-128 214-289 (364)
144 cd00861 ProRS_anticodon_short 74.5 13 0.00028 24.5 5.5 57 60-121 3-62 (94)
145 cd08196 DHQS-like1 Dehydroquin 74.3 18 0.00038 30.9 7.5 62 60-125 21-88 (346)
146 cd05014 SIS_Kpsf KpsF-like pro 74.2 26 0.00056 24.2 8.4 65 63-127 4-88 (128)
147 PRK14186 bifunctional 5,10-met 74.1 4.3 9.4E-05 34.5 3.8 34 90-128 183-216 (297)
148 PRK14189 bifunctional 5,10-met 74.0 6 0.00013 33.4 4.5 53 59-111 34-87 (285)
149 TIGR03217 4OH_2_O_val_ald 4-hy 74.0 19 0.00041 30.7 7.6 52 66-117 108-160 (333)
150 PRK10329 glutaredoxin-like pro 74.0 24 0.00051 23.7 6.7 40 64-106 5-44 (81)
151 PRK14182 bifunctional 5,10-met 74.0 6.3 0.00014 33.3 4.7 52 59-110 32-84 (282)
152 PF02006 DUF137: Protein of un 73.8 16 0.00035 29.3 6.6 55 74-130 20-75 (178)
153 TIGR00677 fadh2_euk methylenet 73.7 26 0.00056 29.1 8.2 66 60-125 32-99 (281)
154 TIGR01481 ccpA catabolite cont 73.6 24 0.00053 27.9 7.8 90 27-120 30-122 (329)
155 PRK14171 bifunctional 5,10-met 73.6 16 0.00035 31.0 7.0 52 59-110 34-86 (288)
156 PRK14178 bifunctional 5,10-met 73.4 9.1 0.0002 32.3 5.5 52 59-110 28-80 (279)
157 PRK14188 bifunctional 5,10-met 73.4 16 0.00035 30.9 7.0 53 59-111 34-87 (296)
158 COG0371 GldA Glycerol dehydrog 73.3 13 0.00028 32.5 6.6 66 59-125 31-96 (360)
159 KOG3857 Alcohol dehydrogenase, 73.1 7.9 0.00017 34.7 5.2 67 60-126 72-140 (465)
160 PRK11041 DNA-binding transcrip 73.1 21 0.00045 27.9 7.2 89 28-120 7-98 (309)
161 PRK14172 bifunctional 5,10-met 72.9 5 0.00011 33.8 3.8 34 90-128 183-216 (278)
162 cd07937 DRE_TIM_PC_TC_5S Pyruv 72.8 24 0.00052 28.9 7.7 58 60-117 106-166 (275)
163 PRK14174 bifunctional 5,10-met 72.7 15 0.00033 31.1 6.7 53 59-111 33-86 (295)
164 cd06320 PBP1_allose_binding Pe 72.5 34 0.00074 26.1 8.1 44 76-119 20-63 (275)
165 cd07944 DRE_TIM_HOA_like 4-hyd 72.3 17 0.00037 29.7 6.7 52 66-117 103-155 (266)
166 PRK14172 bifunctional 5,10-met 72.3 17 0.00036 30.7 6.8 53 59-111 34-87 (278)
167 PLN02516 methylenetetrahydrofo 72.2 4.9 0.00011 34.2 3.6 50 73-127 150-224 (299)
168 PRK09492 treR trehalose repres 72.1 29 0.00064 27.3 7.9 90 27-120 33-125 (315)
169 PRK10401 DNA-binding transcrip 71.8 26 0.00056 28.2 7.6 91 27-121 30-123 (346)
170 TIGR03405 Phn_Fe-ADH phosphona 71.6 12 0.00027 31.5 5.9 62 60-125 25-92 (355)
171 cd06270 PBP1_GalS_like Ligand 71.6 41 0.0009 25.5 8.4 59 61-121 2-63 (268)
172 cd06289 PBP1_MalI_like Ligand- 71.6 40 0.00088 25.3 8.7 60 61-122 2-64 (268)
173 cd03522 MoeA_like MoeA_like. T 71.5 30 0.00065 29.4 8.2 66 58-125 159-231 (312)
174 PRK14194 bifunctional 5,10-met 71.4 6.8 0.00015 33.3 4.3 53 59-111 35-88 (301)
175 PRK14176 bifunctional 5,10-met 71.4 20 0.00043 30.4 7.1 53 59-111 40-93 (287)
176 PRK14191 bifunctional 5,10-met 71.2 18 0.00038 30.7 6.7 53 59-111 33-86 (285)
177 PF13685 Fe-ADH_2: Iron-contai 71.0 7.8 0.00017 31.9 4.5 66 59-124 20-86 (250)
178 TIGR00236 wecB UDP-N-acetylglu 70.9 21 0.00045 29.2 7.0 38 60-97 2-40 (365)
179 PF10137 TIR-like: Predicted n 70.5 25 0.00054 26.2 6.7 57 64-120 3-59 (125)
180 TIGR02955 TMAO_TorT TMAO reduc 70.4 35 0.00077 26.9 8.0 59 61-121 2-65 (295)
181 cd06310 PBP1_ABC_sugar_binding 70.3 37 0.00081 25.8 7.9 57 61-119 2-63 (273)
182 cd03031 GRX_GRX_like Glutaredo 70.1 20 0.00044 27.3 6.3 36 69-106 14-49 (147)
183 PRK14182 bifunctional 5,10-met 70.0 6.3 0.00014 33.3 3.8 50 73-127 140-214 (282)
184 cd06315 PBP1_ABC_sugar_binding 70.0 49 0.0011 25.7 8.6 60 60-121 2-64 (280)
185 PRK14179 bifunctional 5,10-met 69.9 21 0.00046 30.1 6.9 53 59-111 34-87 (284)
186 TIGR02180 GRX_euk Glutaredoxin 69.8 16 0.00035 23.2 5.0 53 67-119 5-61 (84)
187 TIGR02189 GlrX-like_plant Glut 69.8 25 0.00055 24.4 6.3 58 60-119 9-68 (99)
188 PRK00286 xseA exodeoxyribonucl 69.8 32 0.0007 29.8 8.2 96 26-123 103-202 (438)
189 PRK14170 bifunctional 5,10-met 69.8 6.6 0.00014 33.2 3.9 34 90-128 182-215 (284)
190 cd06308 PBP1_sensor_kinase_lik 69.2 49 0.0011 25.2 8.7 58 61-120 2-63 (270)
191 cd06290 PBP1_LacI_like_9 Ligan 69.2 47 0.001 25.1 8.8 60 61-122 2-64 (265)
192 cd05005 SIS_PHI Hexulose-6-pho 69.0 41 0.00088 25.2 7.8 56 62-117 36-106 (179)
193 PRK14168 bifunctional 5,10-met 68.9 21 0.00045 30.4 6.7 53 59-111 35-88 (297)
194 PF03853 YjeF_N: YjeF-related 68.9 40 0.00087 25.5 7.7 61 57-117 24-85 (169)
195 cd06281 PBP1_LacI_like_5 Ligan 68.9 47 0.001 25.3 8.2 50 70-121 14-63 (269)
196 cd03059 GST_N_SspA GST_N famil 68.8 12 0.00026 23.3 4.1 33 70-102 8-40 (73)
197 PLN02204 diacylglycerol kinase 68.4 37 0.00081 31.8 8.7 90 19-122 131-227 (601)
198 cd01989 STK_N The N-terminal d 68.2 33 0.00071 24.0 6.7 50 75-127 68-117 (146)
199 PRK14184 bifunctional 5,10-met 68.0 23 0.0005 29.9 6.8 53 59-111 33-86 (286)
200 cd00537 MTHFR Methylenetetrahy 68.0 25 0.00053 28.4 6.7 53 72-124 45-97 (274)
201 cd02977 ArsC_family Arsenate R 67.9 17 0.00036 25.1 5.0 41 69-109 7-48 (105)
202 TIGR03566 FMN_reduc_MsuE FMN r 67.8 40 0.00087 25.2 7.5 57 60-120 1-75 (174)
203 PRK10792 bifunctional 5,10-met 67.6 21 0.00045 30.2 6.4 52 59-110 35-87 (285)
204 PRK08862 short chain dehydroge 67.6 53 0.0012 25.4 8.4 52 71-123 39-93 (227)
205 PRK14166 bifunctional 5,10-met 67.5 7.8 0.00017 32.7 3.9 34 90-128 182-215 (282)
206 PRK09526 lacI lac repressor; R 67.4 35 0.00075 27.2 7.5 90 27-120 34-127 (342)
207 PF06506 PrpR_N: Propionate ca 67.4 11 0.00023 28.7 4.3 57 59-122 78-134 (176)
208 PRK14021 bifunctional shikimat 67.4 28 0.00061 31.4 7.6 65 60-125 211-281 (542)
209 cd06291 PBP1_Qymf_like Ligand 67.4 52 0.0011 24.9 8.4 59 61-121 2-63 (265)
210 PRK10426 alpha-glucosidase; Pr 67.2 31 0.00067 32.0 8.0 86 21-120 182-289 (635)
211 cd03060 GST_N_Omega_like GST_N 67.2 15 0.00032 23.2 4.4 33 70-102 8-40 (71)
212 PRK14173 bifunctional 5,10-met 67.2 7.9 0.00017 32.8 3.8 34 90-128 180-213 (287)
213 PF05036 SPOR: Sporulation rel 67.0 28 0.0006 21.6 5.9 59 60-118 4-74 (76)
214 COG4026 Uncharacterized protei 67.0 34 0.00073 29.0 7.4 57 59-119 7-64 (290)
215 cd01575 PBP1_GntR Ligand-bindi 66.8 52 0.0011 24.7 8.4 59 61-121 2-63 (268)
216 PRK13761 hypothetical protein; 66.6 25 0.00053 29.6 6.5 54 74-130 83-136 (248)
217 TIGR00676 fadh2 5,10-methylene 66.6 34 0.00074 27.9 7.4 52 73-124 46-97 (272)
218 TIGR02405 trehalos_R_Ecol treh 66.5 45 0.00097 26.4 7.9 89 28-120 31-122 (311)
219 TIGR02194 GlrX_NrdH Glutaredox 66.3 31 0.00068 22.0 6.4 40 64-106 3-42 (72)
220 PRK05447 1-deoxy-D-xylulose 5- 66.3 32 0.0007 30.4 7.5 43 64-108 6-48 (385)
221 PHA03050 glutaredoxin; Provisi 66.2 31 0.00068 24.6 6.3 58 60-119 14-76 (108)
222 PRK14169 bifunctional 5,10-met 66.0 8.4 0.00018 32.5 3.8 34 90-128 181-214 (282)
223 cd07025 Peptidase_S66 LD-Carbo 65.9 24 0.00053 28.9 6.4 56 70-125 12-74 (282)
224 PF04028 DUF374: Domain of unk 65.6 33 0.00071 23.4 6.0 59 59-122 10-68 (74)
225 cd06353 PBP1_BmpA_Med_like Per 65.5 46 0.001 26.6 7.8 57 63-121 5-65 (258)
226 smart00854 PGA_cap Bacterial c 65.5 13 0.00028 29.4 4.6 47 70-119 158-211 (239)
227 cd06322 PBP1_ABC_sugar_binding 65.5 57 0.0012 24.7 8.3 43 75-119 19-61 (267)
228 PF01522 Polysacc_deac_1: Poly 65.5 17 0.00036 24.7 4.7 55 60-116 6-60 (123)
229 PRK14187 bifunctional 5,10-met 65.5 30 0.00066 29.4 7.0 53 59-111 34-87 (294)
230 TIGR03568 NeuC_NnaA UDP-N-acet 65.4 24 0.00051 29.8 6.4 41 60-100 2-43 (365)
231 PRK14192 bifunctional 5,10-met 65.3 48 0.001 27.7 8.1 54 59-112 35-89 (283)
232 cd06303 PBP1_LuxPQ_Quorum_Sens 65.0 63 0.0014 25.0 8.3 47 75-121 20-68 (280)
233 PRK10824 glutaredoxin-4; Provi 64.8 48 0.001 24.3 7.2 58 60-120 16-78 (115)
234 cd06324 PBP1_ABC_sugar_binding 64.8 58 0.0013 25.8 8.2 41 77-119 22-64 (305)
235 PLN02516 methylenetetrahydrofo 64.8 31 0.00066 29.4 6.9 53 59-111 41-94 (299)
236 cd00293 USP_Like Usp: Universa 64.3 37 0.0008 22.1 6.8 42 84-129 68-109 (130)
237 PLN02540 methylenetetrahydrofo 64.2 29 0.00063 32.1 7.1 65 60-124 31-97 (565)
238 cd03419 GRX_GRXh_1_2_like Glut 64.1 34 0.00073 21.7 5.7 39 68-106 7-45 (82)
239 PRK14183 bifunctional 5,10-met 63.7 11 0.00024 31.8 4.1 34 90-128 182-215 (281)
240 cd03036 ArsC_like Arsenate Red 63.7 20 0.00043 25.4 4.8 38 71-108 9-47 (111)
241 PRK13057 putative lipid kinase 63.7 33 0.00071 27.8 6.7 47 72-122 13-59 (287)
242 PRK14171 bifunctional 5,10-met 63.5 10 0.00022 32.1 3.8 34 90-128 184-217 (288)
243 PF00682 HMGL-like: HMGL-like 63.4 28 0.00061 27.1 6.1 58 60-117 82-154 (237)
244 cd02810 DHOD_DHPD_FMN Dihydroo 63.4 61 0.0013 26.0 8.2 36 59-96 100-136 (289)
245 TIGR03590 PseG pseudaminic aci 63.4 21 0.00046 28.9 5.6 34 59-93 171-205 (279)
246 PRK09432 metF 5,10-methylenete 63.3 35 0.00076 28.5 7.0 51 73-123 70-120 (296)
247 PRK12330 oxaloacetate decarbox 62.9 53 0.0011 29.9 8.4 67 59-127 111-181 (499)
248 cd01536 PBP1_ABC_sugar_binding 62.7 61 0.0013 24.0 8.6 59 61-121 2-63 (267)
249 cd08198 DHQS-like2 Dehydroquin 62.6 40 0.00087 29.3 7.4 67 59-125 31-111 (369)
250 cd03045 GST_N_Delta_Epsilon GS 62.6 13 0.00029 23.2 3.5 36 72-107 10-45 (74)
251 PRK10355 xylF D-xylose transpo 62.5 71 0.0015 26.2 8.6 64 57-122 24-90 (330)
252 PRK14170 bifunctional 5,10-met 62.5 27 0.00058 29.6 6.2 52 59-110 33-85 (284)
253 cd07381 MPP_CapA CapA and rela 62.3 20 0.00043 28.1 5.1 52 71-128 161-219 (239)
254 cd07948 DRE_TIM_HCS Saccharomy 62.2 43 0.00093 27.5 7.2 47 71-117 111-158 (262)
255 PRK14183 bifunctional 5,10-met 62.2 33 0.00071 29.0 6.6 52 59-110 33-85 (281)
256 cd03032 ArsC_Spx Arsenate Redu 62.1 18 0.00038 25.7 4.3 41 69-109 8-49 (115)
257 PRK14193 bifunctional 5,10-met 61.9 12 0.00026 31.6 4.0 34 90-128 185-218 (284)
258 COG1570 XseA Exonuclease VII, 61.9 78 0.0017 28.7 9.2 99 23-123 100-203 (440)
259 PF09587 PGA_cap: Bacterial ca 61.8 26 0.00057 27.8 5.8 45 75-119 171-222 (250)
260 PRK14190 bifunctional 5,10-met 61.6 13 0.00028 31.4 4.2 33 90-127 183-215 (284)
261 PLN02897 tetrahydrofolate dehy 61.6 10 0.00023 33.0 3.6 51 73-128 197-272 (345)
262 cd03035 ArsC_Yffb Arsenate Red 61.5 26 0.00057 24.8 5.2 38 71-108 9-47 (105)
263 PF02016 Peptidase_S66: LD-car 61.2 41 0.00088 27.8 6.9 65 61-125 1-74 (284)
264 PRK12757 cell division protein 61.2 96 0.0021 26.1 9.1 65 59-123 183-256 (256)
265 smart00642 Aamy Alpha-amylase 61.1 41 0.0009 25.6 6.5 49 69-118 16-88 (166)
266 cd07939 DRE_TIM_NifV Streptomy 60.9 37 0.00079 27.3 6.5 57 61-117 85-156 (259)
267 KOG1208 Dehydrogenases with di 60.8 28 0.00062 29.4 6.1 48 57-110 33-80 (314)
268 TIGR02495 NrdG2 anaerobic ribo 60.8 36 0.00078 25.4 6.1 51 64-114 131-184 (191)
269 cd02940 DHPD_FMN Dihydropyrimi 60.6 64 0.0014 26.6 8.0 53 58-111 100-165 (299)
270 PRK05867 short chain dehydroge 60.5 71 0.0015 24.4 7.8 42 59-106 9-50 (253)
271 cd06354 PBP1_BmpA_PnrA_like Pe 60.5 78 0.0017 24.6 8.2 58 60-120 1-64 (265)
272 cd06306 PBP1_TorT-like TorT-li 60.3 70 0.0015 24.6 7.8 15 104-118 48-62 (268)
273 cd06299 PBP1_LacI_like_13 Liga 60.3 71 0.0015 24.0 8.6 58 61-120 2-62 (265)
274 TIGR02634 xylF D-xylose ABC tr 60.1 56 0.0012 26.0 7.4 41 78-120 21-61 (302)
275 PRK14189 bifunctional 5,10-met 59.9 12 0.00026 31.7 3.6 45 74-127 171-215 (285)
276 PRK13505 formate--tetrahydrofo 59.7 40 0.00088 31.3 7.2 48 72-119 359-407 (557)
277 cd03029 GRX_hybridPRX5 Glutare 59.6 27 0.00058 22.1 4.5 32 65-96 5-36 (72)
278 cd06274 PBP1_FruR Ligand bindi 59.6 75 0.0016 24.0 8.6 60 61-122 2-64 (264)
279 cd06267 PBP1_LacI_sugar_bindin 59.4 68 0.0015 23.6 8.6 63 61-125 2-67 (264)
280 cd06602 GH31_MGAM_SI_GAA This 59.2 38 0.00082 28.6 6.5 51 70-120 22-86 (339)
281 cd06317 PBP1_ABC_sugar_binding 59.1 75 0.0016 24.0 8.6 45 75-121 20-64 (275)
282 PF01866 Diphthamide_syn: Puta 59.1 18 0.00039 30.2 4.5 56 59-121 210-268 (307)
283 cd06282 PBP1_GntR_like_2 Ligan 59.1 73 0.0016 23.8 8.6 22 98-119 40-61 (266)
284 PRK10792 bifunctional 5,10-met 58.9 11 0.00023 31.9 3.2 33 90-127 184-216 (285)
285 PRK14184 bifunctional 5,10-met 58.9 17 0.00036 30.8 4.3 50 73-127 140-218 (286)
286 PLN02897 tetrahydrofolate dehy 58.8 41 0.00089 29.4 6.8 52 59-110 88-140 (345)
287 PRK14185 bifunctional 5,10-met 58.5 37 0.00081 28.9 6.4 52 59-110 33-85 (293)
288 PRK13600 putative ribosomal pr 58.4 21 0.00045 25.1 4.1 30 62-91 32-61 (84)
289 PLN02616 tetrahydrofolate dehy 58.3 41 0.00089 29.6 6.7 53 59-111 105-158 (364)
290 PRK14453 chloramphenicol/florf 58.0 54 0.0012 28.2 7.3 62 60-121 252-327 (347)
291 cd03041 GST_N_2GST_N GST_N fam 57.0 47 0.001 21.3 5.5 23 72-94 11-33 (77)
292 PRK13059 putative lipid kinase 57.0 38 0.00082 27.7 6.0 53 66-122 13-65 (295)
293 PRK12361 hypothetical protein; 56.8 30 0.00064 30.9 5.7 59 60-122 244-306 (547)
294 COG2263 Predicted RNA methylas 56.8 36 0.00079 27.7 5.7 44 66-119 122-166 (198)
295 PRK13601 putative L7Ae-like ri 56.6 27 0.00058 24.2 4.4 29 61-89 26-54 (82)
296 KOG1752 Glutaredoxin and relat 56.5 53 0.0011 23.7 6.1 58 63-120 16-75 (104)
297 cd07062 Peptidase_S66_mccF_lik 56.2 63 0.0014 26.9 7.3 66 60-125 2-78 (308)
298 TIGR01616 nitro_assoc nitrogen 56.2 31 0.00067 25.5 4.9 38 71-108 11-49 (126)
299 PRK14467 ribosomal RNA large s 55.7 86 0.0019 27.0 8.2 60 60-119 256-324 (348)
300 PRK14185 bifunctional 5,10-met 55.7 16 0.00034 31.1 3.7 51 73-128 169-219 (293)
301 cd06312 PBP1_ABC_sugar_binding 55.6 87 0.0019 23.9 7.5 17 70-86 42-58 (271)
302 cd00578 L-fuc_L-ara-isomerases 55.0 61 0.0013 28.1 7.3 60 59-120 1-70 (452)
303 cd06278 PBP1_LacI_like_2 Ligan 54.9 87 0.0019 23.4 8.6 58 61-121 2-62 (266)
304 PRK09389 (R)-citramalate synth 54.9 90 0.002 28.0 8.5 58 61-118 89-161 (488)
305 PRK10310 PTS system galactitol 54.6 70 0.0015 22.2 7.1 56 60-124 4-61 (94)
306 cd04740 DHOD_1B_like Dihydroor 54.5 1.1E+02 0.0023 24.8 8.2 36 59-96 91-127 (296)
307 cd06592 GH31_glucosidase_KIAA1 54.4 50 0.0011 27.3 6.4 54 67-121 25-91 (303)
308 COG1635 THI4 Ribulose 1,5-bisp 54.3 25 0.00055 29.7 4.6 44 73-119 81-129 (262)
309 TIGR02109 PQQ_syn_pqqE coenzym 54.3 50 0.0011 27.4 6.4 52 65-116 125-176 (358)
310 PF02670 DXP_reductoisom: 1-de 54.2 42 0.00091 25.2 5.4 45 63-109 2-46 (129)
311 PRK14191 bifunctional 5,10-met 54.2 25 0.00054 29.7 4.6 47 73-128 169-215 (285)
312 PF00781 DAGK_cat: Diacylglyce 54.1 76 0.0016 22.4 7.2 46 74-122 17-63 (130)
313 COG0381 WecB UDP-N-acetylgluco 54.1 37 0.00079 30.2 5.8 52 59-110 4-56 (383)
314 COG1393 ArsC Arsenate reductas 54.0 38 0.00083 24.7 5.1 45 64-109 5-50 (117)
315 PRK14040 oxaloacetate decarbox 53.7 1.1E+02 0.0024 28.3 9.0 66 61-127 113-181 (593)
316 cd01653 GATase1 Type 1 glutami 53.5 45 0.00098 20.5 4.8 37 61-99 1-37 (115)
317 cd04336 YeaK YeaK is an unchar 53.5 26 0.00056 25.6 4.1 44 75-118 2-45 (153)
318 cd06301 PBP1_rhizopine_binding 52.9 92 0.002 23.6 7.2 51 65-118 36-86 (272)
319 PF11965 DUF3479: Domain of un 52.9 56 0.0012 25.6 6.1 58 60-119 2-63 (164)
320 TIGR02660 nifV_homocitr homoci 52.8 68 0.0015 27.3 7.1 47 71-117 112-159 (365)
321 PRK10936 TMAO reductase system 52.5 1.3E+02 0.0028 24.6 8.9 85 31-121 23-112 (343)
322 TIGR02667 moaB_proteo molybden 52.2 1E+02 0.0022 23.4 8.5 65 59-124 5-74 (163)
323 TIGR01884 cas_HTH CRISPR locus 52.1 1.1E+02 0.0024 23.7 8.2 65 59-124 26-98 (203)
324 PF14528 LAGLIDADG_3: LAGLIDAD 51.9 21 0.00045 23.1 3.1 25 68-92 28-52 (77)
325 cd06386 PBP1_NPR_C_like Ligand 51.8 65 0.0014 26.9 6.8 61 59-122 138-203 (387)
326 TIGR03127 RuMP_HxlB 6-phospho 51.8 97 0.0021 23.0 8.4 58 62-119 33-105 (179)
327 PRK11253 ldcA L,D-carboxypepti 51.5 81 0.0018 26.5 7.3 62 60-125 3-78 (305)
328 cd03048 GST_N_Ure2p_like GST_N 51.4 36 0.00079 21.8 4.2 30 64-95 4-33 (81)
329 PRK11557 putative DNA-binding 51.0 1.2E+02 0.0027 24.0 8.2 63 62-124 131-213 (278)
330 PRK12331 oxaloacetate decarbox 51.0 1.4E+02 0.003 26.7 9.0 67 60-127 111-180 (448)
331 PRK06683 hypothetical protein; 50.9 36 0.00079 23.4 4.3 51 61-122 29-79 (82)
332 cd06316 PBP1_ABC_sugar_binding 50.5 1.2E+02 0.0026 23.6 7.7 22 98-119 41-62 (294)
333 TIGR02190 GlrX-dom Glutaredoxi 50.3 40 0.00086 22.0 4.3 34 59-94 8-41 (79)
334 PRK11145 pflA pyruvate formate 50.2 1.1E+02 0.0023 24.0 7.4 14 72-85 179-192 (246)
335 COG1737 RpiR Transcriptional r 50.1 1.1E+02 0.0023 25.1 7.6 57 60-117 132-208 (281)
336 cd00758 MoCF_BD MoCF_BD: molyb 49.9 81 0.0017 22.7 6.2 47 76-124 23-69 (133)
337 PRK06940 short chain dehydroge 49.9 1.1E+02 0.0024 24.1 7.6 25 99-123 61-86 (275)
338 PRK14041 oxaloacetate decarbox 49.8 1.3E+02 0.0028 27.1 8.6 68 59-127 109-179 (467)
339 cd00570 GST_N_family Glutathio 49.5 46 0.00099 19.2 4.1 30 72-101 10-39 (71)
340 PRK11858 aksA trans-homoaconit 49.1 70 0.0015 27.5 6.6 57 61-117 91-162 (378)
341 TIGR03470 HpnH hopanoid biosyn 48.9 81 0.0018 26.3 6.9 52 66-117 143-195 (318)
342 TIGR01205 D_ala_D_alaTIGR D-al 48.8 31 0.00066 27.7 4.2 30 60-89 1-35 (315)
343 cd06313 PBP1_ABC_sugar_binding 48.6 96 0.0021 24.0 6.9 57 60-119 30-86 (272)
344 PRK13602 putative ribosomal pr 48.3 43 0.00093 22.9 4.3 30 61-90 29-58 (82)
345 cd04912 ACT_AKiii-LysC-EC-like 48.2 46 0.001 21.6 4.4 36 60-95 3-39 (75)
346 TIGR00442 hisS histidyl-tRNA s 48.2 59 0.0013 27.4 6.0 58 59-121 323-380 (397)
347 cd03033 ArsC_15kD Arsenate Red 48.2 47 0.001 23.9 4.7 38 70-107 9-47 (113)
348 PF00128 Alpha-amylase: Alpha 48.2 52 0.0011 25.3 5.3 30 91-120 43-72 (316)
349 PF04748 Polysacc_deac_2: Dive 48.1 56 0.0012 26.1 5.5 48 24-86 71-120 (213)
350 PRK14176 bifunctional 5,10-met 47.9 24 0.00053 29.9 3.6 33 90-127 189-221 (287)
351 PRK05301 pyrroloquinoline quin 47.8 76 0.0017 26.6 6.6 54 64-117 133-186 (378)
352 PRK14469 ribosomal RNA large s 47.8 1.3E+02 0.0028 25.5 8.0 56 62-119 257-320 (343)
353 COG1879 RbsB ABC-type sugar tr 47.6 1.2E+02 0.0026 24.3 7.4 70 59-128 34-106 (322)
354 cd03030 GRX_SH3BGR Glutaredoxi 47.6 59 0.0013 22.7 5.0 44 64-109 9-52 (92)
355 cd06347 PBP1_ABC_ligand_bindin 47.5 1.3E+02 0.0028 23.5 7.5 64 59-123 136-201 (334)
356 cd06594 GH31_glucosidase_YihQ 47.4 89 0.0019 26.1 6.9 50 70-120 21-91 (317)
357 PRK13758 anaerobic sulfatase-m 47.3 64 0.0014 26.8 6.0 52 66-117 138-189 (370)
358 TIGR01108 oadA oxaloacetate de 47.2 1.4E+02 0.003 27.6 8.6 66 60-126 106-174 (582)
359 PF13409 GST_N_2: Glutathione 47.2 41 0.0009 21.4 3.9 24 72-95 3-26 (70)
360 cd03040 GST_N_mPGES2 GST_N fam 47.1 27 0.00059 22.1 3.0 22 72-93 11-32 (77)
361 TIGR02883 spore_cwlD N-acetylm 47.1 66 0.0014 24.6 5.7 54 69-122 27-92 (189)
362 cd03061 GST_N_CLIC GST_N famil 47.1 49 0.0011 23.2 4.5 38 69-106 20-57 (91)
363 TIGR00048 radical SAM enzyme, 47.0 1.1E+02 0.0024 26.2 7.6 58 60-119 262-328 (355)
364 cd03110 Fer4_NifH_child This p 46.9 1.1E+02 0.0024 22.3 7.9 58 60-117 118-175 (179)
365 COG0159 TrpA Tryptophan syntha 46.9 39 0.00084 28.5 4.6 59 58-116 17-95 (265)
366 cd05009 SIS_GlmS_GlmD_2 SIS (S 46.9 99 0.0021 21.7 7.5 60 60-119 14-95 (153)
367 PRK10222 PTS system L-ascorbat 46.8 42 0.00091 23.0 4.1 38 75-123 5-44 (85)
368 PRK13361 molybdenum cofactor b 46.8 1E+02 0.0022 25.6 7.2 49 69-117 137-187 (329)
369 PRK01655 spxA transcriptional 46.7 39 0.00084 24.8 4.2 41 69-109 8-49 (131)
370 cd05013 SIS_RpiR RpiR-like pro 46.6 90 0.0019 21.1 8.7 58 61-118 15-92 (139)
371 cd06368 PBP1_iGluR_non_NMDA_li 46.6 1.2E+02 0.0025 24.0 7.2 61 59-121 128-188 (324)
372 PLN02530 histidine-tRNA ligase 46.6 71 0.0015 28.3 6.5 57 59-120 402-458 (487)
373 PF02557 VanY: D-alanyl-D-alan 46.5 4.1 8.8E-05 29.6 -1.1 46 83-130 21-70 (132)
374 cd07945 DRE_TIM_CMS Leptospira 46.4 88 0.0019 25.9 6.6 42 76-117 119-164 (280)
375 TIGR02090 LEU1_arch isopropylm 46.4 1.1E+02 0.0023 26.2 7.3 46 72-117 112-158 (363)
376 COG1609 PurR Transcriptional r 46.4 1.2E+02 0.0027 25.1 7.6 90 28-121 30-122 (333)
377 PRK10638 glutaredoxin 3; Provi 46.4 81 0.0018 20.6 6.2 39 68-108 9-47 (83)
378 PTZ00062 glutaredoxin; Provisi 46.4 1.3E+02 0.0029 24.0 7.5 101 13-119 67-175 (204)
379 cd06371 PBP1_sensory_GC_DEF_li 46.3 1.6E+02 0.0035 24.5 8.3 61 59-120 133-195 (382)
380 PF03358 FMN_red: NADPH-depend 46.3 1.1E+02 0.0023 21.8 7.3 51 60-112 2-71 (152)
381 TIGR00237 xseA exodeoxyribonuc 46.2 2.1E+02 0.0045 25.2 9.3 100 22-123 93-197 (432)
382 PF13727 CoA_binding_3: CoA-bi 46.1 61 0.0013 23.0 5.0 44 75-119 131-174 (175)
383 TIGR02200 GlrX_actino Glutared 46.0 70 0.0015 19.7 5.8 52 64-118 4-56 (77)
384 cd06597 GH31_transferase_CtsY 46.0 1.1E+02 0.0024 25.9 7.3 25 69-93 21-45 (340)
385 TIGR00322 diphth2_R diphthamid 45.8 84 0.0018 26.9 6.6 56 59-121 233-291 (332)
386 PF03618 Kinase-PPPase: Kinase 45.7 1.1E+02 0.0023 25.7 7.0 51 67-117 5-57 (255)
387 cd06380 PBP1_iGluR_AMPA N-term 45.6 1.6E+02 0.0034 24.2 8.0 61 59-120 127-190 (382)
388 cd03132 GATase1_catalase Type 45.6 77 0.0017 22.5 5.5 38 60-99 3-40 (142)
389 cd05710 SIS_1 A subgroup of th 45.4 1.1E+02 0.0023 21.6 8.3 31 90-120 51-81 (120)
390 PRK14178 bifunctional 5,10-met 45.3 31 0.00067 29.1 3.8 45 72-125 163-207 (279)
391 cd06304 PBP1_BmpA_like Peripla 45.3 1.2E+02 0.0027 23.1 7.0 43 75-120 21-63 (260)
392 PLN02837 threonine-tRNA ligase 45.1 79 0.0017 29.1 6.7 57 59-121 517-573 (614)
393 TIGR01617 arsC_related transcr 45.0 77 0.0017 22.4 5.4 36 69-106 7-42 (117)
394 PRK05339 PEP synthetase regula 45.0 1.6E+02 0.0035 24.8 8.0 56 63-118 7-64 (269)
395 PRK12559 transcriptional regul 44.9 67 0.0014 23.7 5.2 39 70-108 9-48 (131)
396 PRK00061 ribH 6,7-dimethyl-8-r 44.6 66 0.0014 24.7 5.3 62 57-121 11-79 (154)
397 PRK08085 gluconate 5-dehydroge 44.5 1.4E+02 0.003 22.8 7.1 41 59-105 9-49 (254)
398 PRK01231 ppnK inorganic polyph 44.4 30 0.00066 28.9 3.7 63 60-122 6-71 (295)
399 PF02219 MTHFR: Methylenetetra 44.2 1.3E+02 0.0029 24.5 7.3 65 60-124 43-109 (287)
400 PRK07109 short chain dehydroge 44.0 1.8E+02 0.0039 23.9 9.0 25 59-85 8-32 (334)
401 PRK15482 transcriptional regul 44.0 1.7E+02 0.0036 23.5 8.5 60 62-121 138-217 (285)
402 cd06277 PBP1_LacI_like_1 Ligan 43.9 1.4E+02 0.003 22.6 8.5 49 71-121 18-66 (268)
403 PRK09701 D-allose transporter 43.9 1.7E+02 0.0036 23.4 8.5 64 59-122 25-91 (311)
404 PRK14455 ribosomal RNA large s 43.8 1.3E+02 0.0029 25.8 7.6 58 62-121 268-334 (356)
405 cd06292 PBP1_LacI_like_10 Liga 43.6 1.4E+02 0.0031 22.5 7.4 66 58-123 122-191 (273)
406 COG1832 Predicted CoA-binding 43.5 50 0.0011 25.5 4.4 47 70-119 2-49 (140)
407 PRK14454 ribosomal RNA large s 43.2 1.5E+02 0.0032 25.4 7.7 56 62-119 257-321 (342)
408 PRK01966 ddl D-alanyl-alanine 43.1 40 0.00086 28.0 4.2 31 59-89 4-39 (333)
409 cd01987 USP_OKCHK USP domain i 43.1 92 0.002 21.0 5.4 52 72-128 49-100 (124)
410 cd06388 PBP1_iGluR_AMPA_GluR4 42.8 1.6E+02 0.0034 24.8 7.8 59 59-119 125-184 (371)
411 PRK14181 bifunctional 5,10-met 42.7 33 0.00073 29.1 3.7 51 73-128 165-215 (287)
412 PRK09282 pyruvate carboxylase 42.6 1.9E+02 0.0041 26.8 8.7 67 59-126 110-179 (592)
413 PRK14457 ribosomal RNA large s 42.6 1.7E+02 0.0037 25.2 8.0 59 60-120 259-326 (345)
414 cd01311 PDC_hydrolase 2-pyrone 42.6 89 0.0019 24.8 5.9 49 70-123 108-156 (263)
415 PRK11175 universal stress prot 42.4 1.1E+02 0.0023 24.3 6.4 50 75-127 72-121 (305)
416 cd01994 Alpha_ANH_like_IV This 42.4 1.1E+02 0.0023 23.9 6.3 46 75-121 48-96 (194)
417 PRK14194 bifunctional 5,10-met 42.4 32 0.00069 29.3 3.5 35 90-129 184-218 (301)
418 PF10662 PduV-EutP: Ethanolami 42.2 1.3E+02 0.0027 23.0 6.4 49 58-107 90-142 (143)
419 cd03058 GST_N_Tau GST_N family 42.1 63 0.0014 20.3 4.2 28 72-99 10-38 (74)
420 cd06350 PBP1_GPCR_family_C_lik 41.8 1.8E+02 0.0038 23.1 8.4 64 59-122 161-226 (348)
421 COG4002 Predicted phosphotrans 41.8 87 0.0019 26.3 5.8 20 107-127 186-205 (256)
422 TIGR02493 PFLA pyruvate format 41.8 1.2E+02 0.0026 23.4 6.4 45 70-114 141-188 (235)
423 PRK11302 DNA-binding transcrip 41.7 1.7E+02 0.0036 23.2 7.4 59 62-120 131-209 (284)
424 cd03056 GST_N_4 GST_N family, 41.3 57 0.0012 19.9 3.8 24 72-95 10-33 (73)
425 KOG1602 Cis-prenyltransferase 41.2 1.6E+02 0.0035 25.1 7.4 48 59-106 38-105 (271)
426 cd03135 GATase1_DJ-1 Type 1 gl 41.1 66 0.0014 22.9 4.6 38 61-100 1-38 (163)
427 cd06379 PBP1_iGluR_NMDA_NR1 N- 40.9 2E+02 0.0044 23.6 8.0 63 59-122 155-222 (377)
428 cd04335 PrdX_deacylase This CD 40.8 58 0.0013 23.9 4.4 44 75-118 2-45 (156)
429 cd07409 MPP_CD73_N CD73 ecto-5 40.8 73 0.0016 25.9 5.3 44 73-120 170-213 (281)
430 COG1619 LdcA Uncharacterized p 40.8 1.7E+02 0.0038 25.1 7.7 66 59-124 11-85 (313)
431 cd06604 GH31_glucosidase_II_Ma 40.6 1.4E+02 0.0031 24.9 7.1 48 70-118 22-82 (339)
432 COG1103 Archaea-specific pyrid 40.3 33 0.00072 30.1 3.3 33 58-90 156-191 (382)
433 cd00002 YbaK_deacylase This CD 40.2 40 0.00086 24.8 3.4 43 76-118 3-48 (152)
434 PRK13656 trans-2-enoyl-CoA red 40.2 1.1E+02 0.0025 27.2 6.7 30 57-87 39-68 (398)
435 cd06319 PBP1_ABC_sugar_binding 40.1 1.6E+02 0.0035 22.2 8.3 20 98-117 40-59 (277)
436 TIGR00014 arsC arsenate reduct 40.0 89 0.0019 22.2 5.1 39 70-108 8-47 (114)
437 PF13241 NAD_binding_7: Putati 40.0 73 0.0016 22.0 4.5 59 17-89 31-89 (103)
438 TIGR02183 GRXA Glutaredoxin, G 39.8 1.1E+02 0.0024 20.3 5.9 42 65-106 4-48 (86)
439 cd03044 GST_N_EF1Bgamma GST_N 39.4 79 0.0017 20.0 4.4 25 72-96 10-34 (75)
440 TIGR01515 branching_enzym alph 39.3 86 0.0019 28.7 6.0 49 72-120 157-226 (613)
441 cd06595 GH31_xylosidase_XylS-l 39.2 1.3E+02 0.0028 24.7 6.6 50 70-120 23-94 (292)
442 cd03051 GST_N_GTT2_like GST_N 39.0 67 0.0014 19.5 3.9 24 72-95 10-33 (74)
443 TIGR02666 moaA molybdenum cofa 38.9 1.6E+02 0.0035 24.2 7.1 53 64-116 131-185 (334)
444 PRK10026 arsenate reductase; P 38.5 90 0.0019 23.7 5.1 37 72-108 13-50 (141)
445 cd05017 SIS_PGI_PMI_1 The memb 38.5 1.4E+02 0.0029 20.9 7.3 9 78-86 63-71 (119)
446 cd07938 DRE_TIM_HMGL 3-hydroxy 38.5 1.5E+02 0.0033 24.3 6.9 46 72-117 114-166 (274)
447 PRK12313 glycogen branching en 38.4 84 0.0018 28.8 5.8 49 72-120 171-240 (633)
448 cd06299 PBP1_LacI_like_13 Liga 38.2 1.5E+02 0.0033 22.2 6.4 65 59-123 117-185 (265)
449 PF09002 DUF1887: Domain of un 38.2 1.7E+02 0.0037 25.2 7.3 65 59-124 27-95 (381)
450 TIGR03682 arCOG04112 arCOG0411 38.0 1.2E+02 0.0026 25.6 6.3 55 59-121 213-270 (308)
451 COG3414 SgaB Phosphotransferas 37.9 47 0.001 23.6 3.3 56 60-124 3-60 (93)
452 PRK13210 putative L-xylulose 5 37.9 1.5E+02 0.0032 23.2 6.5 47 71-118 93-151 (284)
453 COG1149 MinD superfamily P-loo 37.8 76 0.0017 27.2 5.1 47 68-117 197-243 (284)
454 cd01545 PBP1_SalR Ligand-bindi 37.8 1.7E+02 0.0038 21.9 8.4 14 73-86 44-57 (270)
455 PRK06139 short chain dehydroge 37.7 2.1E+02 0.0045 23.7 7.6 53 71-124 41-95 (330)
456 TIGR01383 not_thiJ DJ-1 family 37.6 89 0.0019 22.8 4.9 37 60-96 1-37 (179)
457 PRK10892 D-arabinose 5-phospha 37.4 2.3E+02 0.0049 23.1 8.3 68 61-128 49-136 (326)
458 PRK14569 D-alanyl-alanine synt 37.4 1.5E+02 0.0032 24.1 6.6 32 59-90 4-40 (296)
459 PF02540 NAD_synthase: NAD syn 37.3 72 0.0016 25.8 4.7 32 60-91 47-79 (242)
460 TIGR02764 spore_ybaN_pdaB poly 36.9 1.6E+02 0.0034 22.1 6.3 52 60-115 7-60 (191)
461 PRK10785 maltodextrin glucosid 36.9 1.3E+02 0.0028 27.6 6.7 51 70-120 177-246 (598)
462 PF01922 SRP19: SRP19 protein; 36.9 32 0.00069 24.3 2.3 23 69-91 26-48 (95)
463 TIGR01754 flav_RNR ribonucleot 36.8 1.6E+02 0.0034 21.1 8.5 66 60-125 2-93 (140)
464 cd03052 GST_N_GDAP1 GST_N fami 36.8 74 0.0016 20.5 3.9 23 72-94 10-32 (73)
465 TIGR00177 molyb_syn molybdenum 36.8 1.7E+02 0.0036 21.4 6.4 45 78-124 33-77 (144)
466 PTZ00323 NAD+ synthase; Provis 36.8 62 0.0014 27.3 4.4 30 60-89 80-109 (294)
467 PF01910 DUF77: Domain of unkn 36.7 29 0.00063 24.3 2.1 45 65-109 10-56 (92)
468 PTZ00445 p36-lilke protein; Pr 36.7 81 0.0018 26.0 4.9 54 67-120 24-98 (219)
469 PF13458 Peripla_BP_6: Peripla 36.7 1.5E+02 0.0032 23.3 6.3 64 59-123 136-200 (343)
470 PRK04017 hypothetical protein; 36.6 36 0.00077 25.9 2.6 48 61-119 24-71 (132)
471 PF01261 AP_endonuc_2: Xylose 36.5 1.5E+02 0.0033 21.4 6.0 48 71-118 70-130 (213)
472 cd02978 KaiB_like KaiB-like fa 36.5 1.2E+02 0.0025 20.8 4.9 43 63-105 7-51 (72)
473 PRK12858 tagatose 1,6-diphosph 36.3 2.8E+02 0.0061 23.9 8.5 59 59-117 123-203 (340)
474 cd01310 TatD_DNAse TatD like p 36.2 1.6E+02 0.0034 22.3 6.2 47 71-121 107-153 (251)
475 PF02505 MCR_D: Methyl-coenzym 36.1 61 0.0013 25.5 3.9 48 63-110 77-125 (153)
476 PRK14462 ribosomal RNA large s 36.1 2.5E+02 0.0054 24.4 8.1 58 60-119 267-333 (356)
477 PF14871 GHL6: Hypothetical gl 36.0 85 0.0018 23.3 4.6 47 75-121 3-65 (132)
478 COG0011 Uncharacterized conser 36.0 45 0.00097 24.3 3.0 45 65-111 14-62 (100)
479 PRK03692 putative UDP-N-acetyl 36.0 2.4E+02 0.0051 23.1 7.6 60 60-123 107-167 (243)
480 cd06591 GH31_xylosidase_XylS X 35.9 2.1E+02 0.0045 23.8 7.3 50 70-120 22-86 (319)
481 PRK14167 bifunctional 5,10-met 35.9 49 0.0011 28.2 3.6 51 73-128 169-219 (297)
482 CHL00201 syh histidine-tRNA sy 35.8 1.4E+02 0.0029 26.1 6.5 57 59-120 326-382 (430)
483 PRK00413 thrS threonyl-tRNA sy 35.8 1.1E+02 0.0024 27.6 6.1 58 59-121 540-597 (638)
484 smart00852 MoCF_biosynth Proba 35.7 1.6E+02 0.0035 20.9 6.2 45 77-124 23-68 (135)
485 PF02593 dTMP_synthase: Thymid 35.6 57 0.0012 26.6 3.9 55 69-125 33-88 (217)
486 cd04911 ACT_AKiii-YclM-BS_1 AC 35.5 38 0.00083 23.3 2.5 40 70-109 14-63 (76)
487 PF11495 Regulator_TrmB: Archa 35.5 1.3E+02 0.0029 23.7 5.9 51 70-122 8-58 (233)
488 cd03768 SR_ResInv Serine Recom 35.5 1E+02 0.0022 21.3 4.7 56 65-120 36-91 (126)
489 PF00925 GTP_cyclohydro2: GTP 35.4 74 0.0016 24.3 4.3 38 66-106 120-157 (169)
490 COG0119 LeuA Isopropylmalate/h 35.3 1.6E+02 0.0035 26.0 6.9 50 71-120 116-166 (409)
491 cd06295 PBP1_CelR Ligand bindi 35.2 2E+02 0.0043 21.8 7.6 59 59-121 4-72 (275)
492 PF03808 Glyco_tran_WecB: Glyc 35.2 2E+02 0.0043 21.8 7.6 60 59-123 49-111 (172)
493 PF13580 SIS_2: SIS domain; PD 35.2 25 0.00053 25.6 1.5 24 104-127 26-49 (138)
494 cd07940 DRE_TIM_IPMS 2-isoprop 35.1 1.8E+02 0.0039 23.4 6.7 45 72-116 114-159 (268)
495 cd06309 PBP1_YtfQ_like Peripla 34.9 2E+02 0.0044 21.8 8.2 24 62-85 32-55 (273)
496 cd06601 GH31_lyase_GLase GLase 34.9 1.9E+02 0.0041 24.6 7.1 49 70-119 22-83 (332)
497 cd06593 GH31_xylosidase_YicI Y 34.8 2.1E+02 0.0046 23.3 7.2 52 69-121 21-87 (308)
498 PF04412 DUF521: Protein of un 34.7 1.6E+02 0.0034 26.2 6.7 82 17-117 266-352 (400)
499 TIGR02873 spore_ylxY probable 34.7 1.8E+02 0.0038 24.0 6.7 53 59-115 85-139 (268)
500 PLN02378 glutathione S-transfe 34.7 63 0.0014 24.8 3.8 33 72-104 21-53 (213)
No 1
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=222.09 Aligned_cols=73 Identities=47% Similarity=0.813 Sum_probs=71.6
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcCCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTL 131 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpGvv 131 (131)
++|+|||||+|||++|++|+++|++|||+||++|+||||||+++.+|+++++++|++||||+||+||||||||
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmv 75 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMV 75 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhh
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999996
No 2
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.97 E-value=1.3e-30 Score=231.36 Aligned_cols=116 Identities=39% Similarity=0.629 Sum_probs=104.4
Q ss_pred CCCCCcccceeecceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 032873 5 SKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDF 84 (131)
Q Consensus 5 ~~~~~~~~qvyrghitVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~ka~~~L~~f 84 (131)
+.||++ + .||++++++|.++++++.+.+++.++... ...+...++|+|||||+||+++|++|.++|++|
T Consensus 368 ~~r~~r--k--mGhV~~~g~~~~e~~~~~~~~~~~~~~~~-------~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~ 436 (577)
T PLN02948 368 EMRKQR--K--MGHITVVGPSAAEVEARLDQLLAEESADP-------DALPKGTPLVGIIMGSDSDLPTMKDAAEILDSF 436 (577)
T ss_pred CCCCCC--e--eEEEEEecCCHHHHHHHHHHHHhhhccCC-------CCCCCCCCeEEEEECchhhHHHHHHHHHHHHHc
Confidence 567775 5 89999999999999999999988777552 111334579999999999999999999999999
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcCCC
Q 032873 85 GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTL 131 (131)
Q Consensus 85 GI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpGvv 131 (131)
||+|+++|+||||+|+++.+|+++++++|++||||+|||+|||||||
T Consensus 437 g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~ 483 (577)
T PLN02948 437 GVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMV 483 (577)
T ss_pred CCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHH
Confidence 99999999999999999999999999999999999999999999986
No 3
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=99.96 E-value=1.2e-29 Score=195.60 Aligned_cols=71 Identities=52% Similarity=0.882 Sum_probs=69.6
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcCCC
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTL 131 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpGvv 131 (131)
|+|||||+||+++|+++.++|++|||+||++|+||||+|+++.+|+++++++|++||||+||++||||||+
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvv 71 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMV 71 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999985
No 4
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=99.95 E-value=7.4e-29 Score=189.97 Aligned_cols=73 Identities=38% Similarity=0.719 Sum_probs=65.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcCCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTL 131 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpGvv 131 (131)
|+|+|||||+||+++|+++.++|++|||+||++|+||||+|+++.+|+++++.+|++||||+||++|||||++
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvv 73 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVV 73 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999975
No 5
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.24 E-value=1.3e-12 Score=112.50 Aligned_cols=110 Identities=19% Similarity=0.027 Sum_probs=95.8
Q ss_pred CCCCCcccceeecceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 032873 5 SKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDF 84 (131)
Q Consensus 5 ~~~~~~~~qvyrghitVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~ka~~~L~~f 84 (131)
++|+++ + .||++...+++.+...+.+.....++.- -.+.+.++||+++|.++|..++..++.|
T Consensus 172 es~k~~--~--~~h~~~I~d~~ie~gv~~~~~~~~~a~~-------------v~~~~~~r~~~~~d~~im~D~~~~~d~~ 234 (373)
T KOG2835|consen 172 ESLKAA--W--AGHNCAISDMKIEFGVDVTLGEIVLASD-------------VIDNDSWRMWPDGDGRIMKDKKVYFDLD 234 (373)
T ss_pred hhhhhh--h--cCCccccccchhhhccchhhhhhhhhhc-------------ccchhheEEcccCCcceeeeeeEEeccc
Confidence 455555 4 7899999999999998887654333311 1247999999999999999999999999
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcCCC
Q 032873 85 GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGTL 131 (131)
Q Consensus 85 GI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpGvv 131 (131)
++++|..+.++||+|..+..|+..++.+|++++||+||.++|+||+|
T Consensus 235 ~vt~e~~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v 281 (373)
T KOG2835|consen 235 EVTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMV 281 (373)
T ss_pred cCCccceEEEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhH
Confidence 99999999999999999999999999999999999999999999986
No 6
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.19 E-value=5e-11 Score=97.94 Aligned_cols=74 Identities=24% Similarity=0.427 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCC----eeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcC
Q 032873 54 DSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (131)
Q Consensus 54 ~~~~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~----~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpG 129 (131)
.+...++|+|+...+||+|++++|..+++.+|++ ||+.|+..||....+.+... ++.+++|++|||..+||+
T Consensus 113 ~~~~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~----~~~~~lIVvAGMEGaLPs 188 (254)
T COG1691 113 EPKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKI----EDADVLIVVAGMEGALPS 188 (254)
T ss_pred CcccCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHh----hCCCeEEEEcccccchHH
Confidence 3556689999999999999999999999999997 88999999999887666553 568999999999999998
Q ss_pred CC
Q 032873 130 TL 131 (131)
Q Consensus 130 vv 131 (131)
+|
T Consensus 189 vv 190 (254)
T COG1691 189 VV 190 (254)
T ss_pred HH
Confidence 75
No 7
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00011 Score=64.04 Aligned_cols=83 Identities=14% Similarity=-0.006 Sum_probs=70.3
Q ss_pred CcccceeecceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCe
Q 032873 9 NSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPY 88 (131)
Q Consensus 9 ~~~~qvyrghitVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ 88 (131)
-.++|+|+|+.+||.+.+..+++|+.|++++...+ .+ +.. +
T Consensus 224 m~D~~~~~d~~~vt~e~~ilv~~~~t~~msr~a~~--------a~---~~~----------------------------~ 264 (373)
T KOG2835|consen 224 MKDKKVYFDLDEVTNEGLILVDENTTPVMSRYATS--------AK---SRG----------------------------V 264 (373)
T ss_pred eeeeeEEeccccCCccceEEEeecCchhHhhhhhh--------cc---cCc----------------------------e
Confidence 46789999999999999999999999999887665 11 222 8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhhCCC-eEEEEecCcCCcCcCC
Q 032873 89 EIKILPPHQNCKEALSYALSAKERGI-KIIIVGDGVEAHLSGT 130 (131)
Q Consensus 89 ev~V~SAHRtp~~~~~~~~~~~~~g~-~ViIA~AG~aAhLpGv 130 (131)
.+.++|||..+++...+.+.....|+ .++++++|+++.|.=|
T Consensus 265 ~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V 307 (373)
T KOG2835|consen 265 VLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIV 307 (373)
T ss_pred EEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccce
Confidence 99999999999999999977666666 8899999999988643
No 8
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=96.03 E-value=0.032 Score=46.65 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=57.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.++.|++|+.+-....++..+.|++.|+.+.+.....+-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 89 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKT 89 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchh
Confidence 3688999876666889999999999999987667778888899999998888889999999999985
No 9
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=95.92 E-value=0.035 Score=46.51 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=55.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|++|..+-....+++.+.|++-|+.+++.+.+..-+++.+.+.++.+++.++++|||+-|+|.
T Consensus 24 ~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~ 89 (349)
T cd08550 24 KVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT 89 (349)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH
Confidence 688888876655778899999999999877777777778888999998888889999999999874
No 10
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=95.63 E-value=0.046 Score=43.69 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=66.6
Q ss_pred ceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC
Q 032873 18 TIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ 97 (131)
Q Consensus 18 hitVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHR 97 (131)
|..+|+.+++.+.+|++++.+.-..+ ..++.+|=|-..|.+.++++++.+..+++. .+.+...|+
T Consensus 105 ~~~~tG~~~~~il~nl~~l~~~g~~v--------------~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~ 169 (213)
T PRK10076 105 ARDVVKMNLPRVLENLRLLVSEGVNV--------------IPRLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQ 169 (213)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCcE--------------EEEEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCc
Confidence 45678889999999999987432221 136788889877889999999999999876 788888887
Q ss_pred ---------------------ChHHHHHHHHHHhhCCCeEEE
Q 032873 98 ---------------------NCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 98 ---------------------tp~~~~~~~~~~~~~g~~ViI 118 (131)
+++.+.++.+.+++.|+++.|
T Consensus 170 ~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 170 YGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred cchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 345555666777788999987
No 11
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=95.50 E-value=0.066 Score=45.36 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=56.1
Q ss_pred CeEEEEeccCC--CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~S--Dl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.+|.|+.|..+ .....+++.+.|++.|+.+.+. -+..+-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 37999999876 5678899999999999987642 3457888888999888888889999999999874
No 12
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=95.10 E-value=0.099 Score=44.28 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=52.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.++.|+.|..+= ..+++.+.|++.|+.+.+.-....-+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 87 (374)
T cd08183 23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSV 87 (374)
T ss_pred CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchH
Confidence 378899987553 88889999999999876553445666677888888888889999999999974
No 13
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=94.96 E-value=0.11 Score=43.56 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=55.1
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl-~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.+|.|++|..+-. ...++..+.|++-|+.+.+. -...|-+.+.+.+.++.++..++++|||+-|++.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~ 92 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSV 92 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 3788999887655 77888999999988876532 2557899999999999998889999999999864
No 14
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.89 E-value=0.11 Score=43.59 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=54.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeE-EEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev-~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.++.||.|..+-....+++.+.|++-|+.+.+ .....+-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~ 90 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKA 90 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 37999999777667788889999999998763 33567777777888888888889999999999874
No 15
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=94.87 E-value=0.15 Score=43.13 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=54.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.||.|..+-....++..+.|++.|+.+.+.....+-+-+.+.++++.+.+.++++|||+-|+|.
T Consensus 31 ~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv 96 (366)
T PRK09423 31 RALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKT 96 (366)
T ss_pred EEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 688888866555588888999999999886556678888888888888888888999999999874
No 16
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=94.84 E-value=0.2 Score=41.94 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=56.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC---CCChHHHHHHHHHHhhCCC---eEEEEecCcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SA---HRtp~~~~~~~~~~~~~g~---~ViIA~AG~aA 125 (131)
.++.|++++.......++..+.|+..|+++.+-+... +.+.+.+.+.++.+.+.++ +++||+-|++.
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv 97 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVV 97 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHH
Confidence 3688999887766789999999999999888777664 7888999999888888777 89999999864
No 17
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=94.72 E-value=0.15 Score=42.70 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=50.5
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAH---Rtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|++|..+--...+++.+.|++.|+++.+.+.... .+.+...+.++.+.+ ++++|||+-|++.
T Consensus 25 ~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~ 92 (348)
T cd08175 25 KALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTI 92 (348)
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHH
Confidence 6888888655443478899999999998876554433 788888888877766 7999999999874
No 18
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=94.50 E-value=0.23 Score=41.89 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=54.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.||.+..+-....++..+.|++.| .+.+. ...+.+.+.+.+.++.+.+.+.++|||+-|++.
T Consensus 36 ~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv 99 (350)
T PRK00843 36 RALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKV 99 (350)
T ss_pred eEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchH
Confidence 68999998887667788888999888 77655 557999999999998888888999999999864
No 19
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=94.47 E-value=0.27 Score=41.02 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=52.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC---CCChHHHHHHHHHHhhCCC---eEEEEecCcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SA---HRtp~~~~~~~~~~~~~g~---~ViIA~AG~aA 125 (131)
.++.|++|...-....+++.+.|++.|+++.+.+... +.+-+.+.+.++.+.+.++ +++||+-|++.
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 93 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVV 93 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHH
Confidence 4688888876655678889999999999887666653 5566778888877777665 89999999864
No 20
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=94.39 E-value=0.15 Score=43.38 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=52.9
Q ss_pred eEEEEeccCC--CHHHHHHHHHHHHHhCCCeeEEE-EcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDL--DLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~S--Dl~~~~ka~~~L~~fGI~~ev~V-~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|+.|..+ -....+++.+.|++.|+.+.+.- ..++.+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 28 r~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 96 (383)
T cd08186 28 KVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSP 96 (383)
T ss_pred EEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 6889988654 24567899999999999765432 346778888999999888889999999999874
No 21
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=94.33 E-value=0.16 Score=43.06 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=54.3
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|++|..+- ....+++.+.|++.|+.+.+. -+..|-+-+.+.+.++.++..++++|||+-|+|.
T Consensus 25 r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 92 (375)
T cd08194 25 RPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSP 92 (375)
T ss_pred eEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 68899887654 347889999999999987643 3557888888999999898899999999999874
No 22
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=94.31 E-value=0.19 Score=42.29 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=51.5
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|+.|+.+- ..++..+.|++.|+.+.+. -...|-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 25 ~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 89 (367)
T cd08182 25 RVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSV 89 (367)
T ss_pred eEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 68899887664 6678888999999765432 3457888888999998888889999999999874
No 23
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=94.25 E-value=0.15 Score=43.30 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=53.2
Q ss_pred eEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl-~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|+.|..... ...+++.+.|++.|+.+.+. =+.+|-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 30 ~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 97 (377)
T cd08176 30 KALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSP 97 (377)
T ss_pred eEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 688888765544 67889999999999976543 1345888888999998888889999999999875
No 24
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=94.16 E-value=0.16 Score=36.87 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=42.1
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|..|.+.+ ..+.+...+.|+++||.|++...+..-+.+++.+.++...+
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 478888997655 56778888999999999999999999999999999976643
No 25
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=94.15 E-value=0.14 Score=42.88 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=54.9
Q ss_pred eEEEEeccCCCHH--HHHHHHHHHHHhCCCeeEEE-EcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLP--VMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~--~~~ka~~~L~~fGI~~ev~V-~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|.||+|. +-.. .+++..+.|++-|+++.+.- +..|-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 23 r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSV 90 (366)
T ss_dssp EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHH
T ss_pred CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 89999988 4333 68999999999999986554 789999999999999999999999999999874
No 26
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=94.04 E-value=0.18 Score=43.13 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=52.7
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~-SDl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.+|.|++|.. .+....+++.+.|++.|+.+.+. -+..+.+-+.+.+.++.+.+.++++|||+-|+|.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 3688888754 23457888999999999876532 2446788888999998888889999999999874
No 27
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=93.91 E-value=0.2 Score=42.65 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=52.5
Q ss_pred eEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl-~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|++|..... ...++..+.|++.|+++.+. -..++.+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 31 r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSv 98 (379)
T TIGR02638 31 KALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSP 98 (379)
T ss_pred EEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 688888765332 37788999999999987643 1346788899999998888889999999999874
No 28
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=93.89 E-value=0.18 Score=42.87 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=52.4
Q ss_pred CeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SD--l~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.++.|++|..+- ....++..+.|++.|+.+.+. -+.+|-+.+.+.+.++.++..++++|||+-|+|.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 98 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSV 98 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 378889886554 356788999999999876532 2446777888888888888889999999999875
No 29
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=93.69 E-value=0.48 Score=39.98 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=53.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChHHHHHHHHHHhhCCC---eEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~S---AHRtp~~~~~~~~~~~~~g~---~ViIA~AG~aA 125 (131)
++.|++++...-...+++.+.|+..|+.+.+.+.+ ++.+-+.+.+.++.+.+.|+ +++||+-|++.
T Consensus 33 ~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 104 (358)
T PRK00002 33 KVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVI 104 (358)
T ss_pred eEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHH
Confidence 68899988776678899999999999998865544 36677888888877777666 99999999864
No 30
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.69 E-value=0.47 Score=32.39 Aligned_cols=58 Identities=9% Similarity=0.030 Sum_probs=38.6
Q ss_pred eEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCC-CeEEEE
Q 032873 60 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (131)
Q Consensus 60 ~V~IimGS~SDl---~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g-~~ViIA 119 (131)
.|.|+|-|.+|. +.|.++.+.|+++||+|+..=+..+ ++...++.+....+. ..|||-
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEEC
Confidence 588888876655 5777999999999999997766655 444444443322222 366663
No 31
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=93.62 E-value=0.5 Score=40.36 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=53.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChHHHHHHHHHHhhCCCe---EEEEecCcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIK---IIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~S---AHRtp~~~~~~~~~~~~~g~~---ViIA~AG~aA 125 (131)
.++.|++++.-.....++..+.|++.|+++++.+.+ .+++.+.+.+.++.+.+.+++ ++||+-|++.
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv 96 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVV 96 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHH
Confidence 368888887655457788999999999988777654 467778888888888888897 9999999863
No 32
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=93.61 E-value=0.28 Score=41.39 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=52.4
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|+.|... +....+++.+.|++-|+++.+. -+..|-+-+.+.+.++.++..++++|||+-|+|.
T Consensus 26 ~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 26 RPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 6888887543 3447899999999999987543 2457888888999998888889999999999874
No 33
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=93.51 E-value=0.27 Score=41.46 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred CeEEEEeccCC-C-HHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDL-D-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~S-D-l~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.++.|++|..+ . ....+++.+.|++.|+.+.+. -+..+-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 37888988765 3 346688999999999976543 2446888888999998888999999999999985
No 34
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=93.50 E-value=0.49 Score=39.48 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=52.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|++|...-....+++.+.|++.| .+.+.+. .+=+.+.+.+.++.+.+.+++++||+-|++.
T Consensus 27 ~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~ 90 (339)
T cd08173 27 RVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVIV-EDATYEEVEKVESSARDIGADFVIGVGGGRV 90 (339)
T ss_pred eEEEEECCchHHHHHHHHHHHHHhcC-CeEEEEe-CCCCHHHHHHHHHHhhhcCCCEEEEeCCchH
Confidence 68888888776678889999999999 7766543 5667788888888888888999999999874
No 35
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=93.39 E-value=0.32 Score=41.31 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=50.1
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEE-EcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V-~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|.|++|.... ....+++.+.|++.|+.+.+.- +.++-+-+.+.+.++.+...++++|||+-|+|.
T Consensus 30 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsv 97 (377)
T cd08188 30 KVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSP 97 (377)
T ss_pred eEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 78888886432 2367889999999999776431 235666777888888888889999999999874
No 36
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.33 E-value=0.6 Score=39.32 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=60.0
Q ss_pred CCCCcccceeecceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCC-----CH----HHHHH
Q 032873 6 KRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDL-----DL----PVMND 76 (131)
Q Consensus 6 ~~~~~~~qvyrghitVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~S-----Dl----~~~~k 76 (131)
.+||++.+. =-.-.|+++.+++..+++..-+ ..+ ..++|+|+.|++| |. ..+++
T Consensus 111 ~~~Nvl~t~-ga~~~i~~~~l~~a~~~~~~~~---~~l-------------~~p~~avLIGG~s~~~~~~~~~~~~l~~~ 173 (311)
T PF06258_consen 111 RGPNVLPTL-GAPNRITPERLAEAAAAWAPRL---AAL-------------PRPRVAVLIGGDSKHYRWDEEDAERLLDQ 173 (311)
T ss_pred CCCceEecc-cCCCcCCHHHHHHHHHhhhhhh---ccC-------------CCCeEEEEECcCCCCcccCHHHHHHHHHH
Confidence 567776552 1233455555666666554332 221 3368999999987 33 35566
Q ss_pred HHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeE
Q 032873 77 AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 116 (131)
Q Consensus 77 a~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~V 116 (131)
+...++..| ..+.|+.-.|||+++.+.++..-+....+
T Consensus 174 l~~~~~~~~--~~~~vttSRRTp~~~~~~L~~~~~~~~~~ 211 (311)
T PF06258_consen 174 LAALAAAYG--GSLLVTTSRRTPPEAEAALRELLKDNPGV 211 (311)
T ss_pred HHHHHHhCC--CeEEEEcCCCCcHHHHHHHHHhhcCCCce
Confidence 666777777 57999999999999999996665333344
No 37
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=93.31 E-value=0.3 Score=41.58 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=51.4
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~-SDl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|.|++|.. .+....+++.+.|++.|+.+.+. =+-.+.+-+.+.+.++.+.+.++++|||+-|+|.
T Consensus 32 ~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 99 (382)
T PRK10624 32 KALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSP 99 (382)
T ss_pred EEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 688888754 34458889999999999977543 1335667788888888888889999999999874
No 38
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=93.29 E-value=0.34 Score=41.05 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=51.7
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|.|++|.... ....+++.+.|++.|+.+.+. -+-+|-+-+.+.+.++.+.+.++++|||+-|+|.
T Consensus 28 ~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~ 95 (374)
T cd08189 28 KVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSV 95 (374)
T ss_pred eEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 68888886543 236788999999999976532 2336788888889888888889999999999874
No 39
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=93.26 E-value=0.34 Score=41.06 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=53.1
Q ss_pred eEEEEeccCC--CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~S--Dl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|++|..+ .....++..+.|++.|+++.+. =+..|-+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 25 r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 93 (375)
T cd08179 25 KAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSP 93 (375)
T ss_pred eEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 6888888654 3467789999999999976532 1346888899999999998899999999999974
No 40
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=92.79 E-value=0.42 Score=38.68 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHH-----------HHHHHHHHhhCCCeEEEE
Q 032873 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE-----------ALSYALSAKERGIKIIIV 119 (131)
Q Consensus 68 ~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~-----------~~~~~~~~~~~g~~ViIA 119 (131)
.+|++.++++++.|.+.|||+-+-|+..|..|.. +.++++++.++|..|+.=
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 6999999999999999999999999999887765 444567888899888763
No 41
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=92.74 E-value=0.28 Score=42.22 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=50.1
Q ss_pred eEEEEecc-CCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMES-DLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS-~SDl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|+.|. -......+++.+.|++-||.+.+. -+...-+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 51 ~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 51 HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 45555442 234456789999999999987654 3445666688889998888999999999999985
No 42
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=92.71 E-value=0.36 Score=40.83 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=52.6
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|.|+.|+.- ++...++....|++-|+.+.+. -+-.|.+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 28 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~ 95 (376)
T cd08193 28 RVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSS 95 (376)
T ss_pred eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 6888887642 4557889999999999876532 2347888899999999888889999999999975
No 43
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.62 E-value=0.88 Score=31.78 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=39.0
Q ss_pred CeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCC-CeEEEEe
Q 032873 59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIVG 120 (131)
Q Consensus 59 ~~V~IimGS~SDl---~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g-~~ViIA~ 120 (131)
..|.|+|-+++|+ |.|.++.+.|+++||+|+..=+ -..|+...++.+....+. ..|||-+
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di--~~~~~~~~~l~~~tg~~tvP~vfi~g 75 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNV--LEDPEIRQGIKEYSNWPTIPQLYVKG 75 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEEC--CCCHHHHHHHHHHhCCCCCCEEEECC
Confidence 3699999877555 6778999999999999885433 344554444433322222 3677753
No 44
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=92.61 E-value=0.9 Score=38.73 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=53.2
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChHHHHHHHHHHhhCCC----eEEEEecCcC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI----KIIIVGDGVE 124 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~S---AHRtp~~~~~~~~~~~~~g~----~ViIA~AG~a 124 (131)
.++.||+++...--..++..+.|+..|+++..-+.. .+++.+...+..+.+.+.++ +++||+-|++
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~ 99 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGV 99 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcH
Confidence 468888887665446788899999999988766665 58888999998887777777 9999999975
No 45
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=92.59 E-value=0.62 Score=40.25 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=52.5
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|.|+.|... .....+++.+.|++.|+.+.+. -+..+-+-+.+.+.++.+.+.++++|||+-|+|.
T Consensus 25 ~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSv 92 (414)
T cd08190 25 RVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSV 92 (414)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 6888887542 2335788999999999987643 2447888888999998898999999999999974
No 46
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=92.50 E-value=0.76 Score=37.82 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=51.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|++|...-....++..+.|++. +.+.+. ....+.+-+.+.+.++.+.+.++++|||+-|++.
T Consensus 25 ~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~ 90 (332)
T cd07766 25 RALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGST 90 (332)
T ss_pred eEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchH
Confidence 6888887765447888999999887 766544 2446778888888888888888999999999874
No 47
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=92.05 E-value=0.77 Score=38.43 Aligned_cols=65 Identities=6% Similarity=-0.083 Sum_probs=48.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc--CCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~S--AHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|.||+++.+-....+++.+.|++-|+.+++.... .+.+-+.+.+.++.+.. +.+++||+-|++.
T Consensus 26 kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv 92 (332)
T cd08549 26 KIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTI 92 (332)
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHH
Confidence 68999987775556788999999989877653322 33355777777777766 7999999999864
No 48
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=91.82 E-value=0.48 Score=40.55 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=52.2
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~-SDl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|.|++|.. ......++..+.|++.||.+.+. =+.++-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 33 ~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~ 100 (383)
T PRK09860 33 RTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSP 100 (383)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 688888753 34667889999999999975322 2445777888999998888999999999999874
No 49
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=91.57 E-value=0.96 Score=36.39 Aligned_cols=64 Identities=6% Similarity=-0.015 Sum_probs=49.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh-CCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~f-GI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
+|++++|+-+|+-.+......|++. ++++.+-++.-|..+..-..+.+..-..++++.+...|.
T Consensus 1 ~i~~~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~ 65 (363)
T cd03786 1 KILVVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSD 65 (363)
T ss_pred CEEEEEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCC
Confidence 4889999999999999999999886 888888899999988876666543334455666666654
No 50
>PRK15138 aldehyde reductase; Provisional
Probab=91.02 E-value=0.58 Score=40.17 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=47.8
Q ss_pred CeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SD--l~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.++.|++|..|- ....+++.+.|+ |+.+.+. -+.++-+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 97 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSV 97 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 368889875542 345677777775 6654432 2346777888999998888889999999999874
No 51
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=90.75 E-value=1.2 Score=37.97 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=48.1
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcC---CCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SA---HRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|.|+.|...- ....+++.+.|++-|+.+.+ .+- +-..+.+.+.++.+.+.++++|||+-|+|.
T Consensus 24 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~--f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 91 (386)
T cd08191 24 RALIVTDERMAGTPVFAELVQALAAAGVEVEV--FDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSC 91 (386)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCeEEE--ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 68888886554 37888999999999987653 343 334555666677777788999999999874
No 52
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=1.2 Score=30.09 Aligned_cols=52 Identities=27% Similarity=0.300 Sum_probs=40.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh-hCCC-eEEEE
Q 032873 67 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK-ERGI-KIIIV 119 (131)
Q Consensus 67 S~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~-~~g~-~ViIA 119 (131)
+.++=|.|.++.+.|++.|++|+...+..|.. ++..++++... .+.+ .|||-
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~ 60 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIG 60 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEEC
Confidence 45668999999999999999999988877766 77777887662 3434 55553
No 53
>PLN02834 3-dehydroquinate synthase
Probab=90.46 E-value=1.7 Score=38.25 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=52.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeE--EEEc---CCCChHHHHHHHHHHhhCCCe---EEEEecCcC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--KILP---PHQNCKEALSYALSAKERGIK---IIIVGDGVE 124 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev--~V~S---AHRtp~~~~~~~~~~~~~g~~---ViIA~AG~a 124 (131)
.+|.||++..-.-...+++.+.|+.-|+++.+ .+.. .+++.+.+.+.++.+.+.+++ ++||+-|++
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGs 174 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGV 174 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChH
Confidence 47889988776666888899999999987765 3444 467888888888878777777 999999985
No 54
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=90.02 E-value=0.93 Score=36.64 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=46.1
Q ss_pred EEEEeccCCC--HHHHHHHHHHHHHhCCCe---eEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 61 VGIIMESDLD--LPVMNDAARTLSDFGVPY---EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 61 V~IimGS~SD--l~~~~ka~~~L~~fGI~~---ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
|+|+-=-..| .+..+...+.|++.|+.- ++.+..+.+.++++.+++++..+..+++||++...+
T Consensus 2 v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~a 70 (294)
T PF04392_consen 2 VGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPA 70 (294)
T ss_dssp EEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHH
T ss_pred eEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHH
Confidence 5555444444 567778888999999876 788899999999999999988888999999986544
No 55
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=89.62 E-value=2.7 Score=27.36 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=43.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.|.|+.-+..+.+.+.+.+..|..-|+.+++... .+.+....+++ ...|+..+|-+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~a---~~~g~~~~iiig 59 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIREA---QLQKIPYILVVG 59 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHH---HHcCCCEEEEEC
Confidence 5777877888899999999999999998887553 46777776665 467877666554
No 56
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=89.46 E-value=0.99 Score=37.73 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=48.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|++|...--...++..+.|++.++. .+.-...|-+-+.+.+.++.+.+.++++|||+-|++.
T Consensus 25 ~~livt~~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~ 89 (337)
T cd08177 25 RALVLTTPSLATKLAERVASALGDRVAG-TFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGST 89 (337)
T ss_pred eEEEEcChHHHHHHHHHHHHHhccCCcE-EeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 6888888765444777888888876432 1222336777888888888888889999999999874
No 57
>PRK11914 diacylglycerol kinase; Reviewed
Probab=89.15 E-value=2 Score=35.12 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=43.8
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 60 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 60 ~V~Iim----GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
++.+|. |+.......+++.+.|++.|+.+++..+. + +....++++.+...+++++|++-|
T Consensus 10 ~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~--~-~~~~~~~a~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 10 KVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGT--D-AHDARHLVAAALAKGTDALVVVGG 73 (306)
T ss_pred eEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeC--C-HHHHHHHHHHHHhcCCCEEEEECC
Confidence 455554 66666778888999999999877665442 2 788889998877788887775544
No 58
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.96 E-value=4.4 Score=25.98 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=34.3
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCC-CeEEE
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIII 118 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g-~~ViI 118 (131)
|.+..- +.=+.|++|.+.|++.||+|+..=+. ..++...++.+...... ..|||
T Consensus 3 v~ly~~--~~C~~C~ka~~~L~~~gi~~~~~di~--~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSR--LGCEDCTAVRLFLREKGLPYVEINID--IFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEec--CCChhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHHHHhCCCCcCEEEE
Confidence 444443 33488999999999999999977665 33555555554333222 45555
No 59
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=88.30 E-value=2.1 Score=35.60 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=46.9
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|++|.... ....+++.+.|++- +.+.+. -+..+.+-+.+.+.++.+.+.++++||++-|+|.
T Consensus 24 ~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~ 90 (332)
T cd08180 24 RVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSA 90 (332)
T ss_pred eEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 68888875332 23567777788765 655322 2346778888888888888889999999999875
No 60
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=88.07 E-value=7 Score=29.69 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=49.0
Q ss_pred EEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 61 V~IimGS~SDl---~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
|+||+.+.++- ...+.+.+.++++|+.+++. ..+.-.+++..+.++.+-.+|++.||....-..
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~ 67 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD 67 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTT
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH
Confidence 67888888874 24456677778888866655 678999999999999998899998887655443
No 61
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=87.65 E-value=2.1 Score=37.00 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=54.6
Q ss_pred EEE--EeccCCCHHHHHHHHHHHHHhCC-CeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 61 VGI--IMESDLDLPVMNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 61 V~I--imGS~SDl~~~~ka~~~L~~fGI-~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
|+| +.--++=.+..+-+.+.|+++|. ..++.+-+||-.+.....+++....++.+|+|++++-+
T Consensus 33 VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~ 99 (322)
T COG2984 33 VAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPA 99 (322)
T ss_pred EEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHH
Confidence 555 44555666778888999999999 88999999999999999999999889999999999844
No 62
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=87.29 E-value=8.6 Score=30.23 Aligned_cols=65 Identities=14% Similarity=0.271 Sum_probs=46.6
Q ss_pred CCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 57 ~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
+...|++++.+-+| ....+.+.+.++++|+.+ .+......+++..++++....++++.+|..+..
T Consensus 25 ~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~--~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~ 92 (295)
T PRK10653 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTD 92 (295)
T ss_pred cCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34579999987665 344556667788899654 445667889888888888777888877766543
No 63
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=87.02 E-value=1.7 Score=34.90 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=28.5
Q ss_pred CCCeEEEEeccCCCHHHH-----HHHHHHHHHhCCCeeEE
Q 032873 57 DAPIVGIIMESDLDLPVM-----NDAARTLSDFGVPYEIK 91 (131)
Q Consensus 57 ~~~~V~IimGS~SDl~~~-----~ka~~~L~~fGI~~ev~ 91 (131)
++.+|+|++|++|+.... +.+.+.|++.|+.+++-
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i 42 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPI 42 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEE
Confidence 445799999999986655 89999999999986654
No 64
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=86.97 E-value=6.1 Score=31.56 Aligned_cols=91 Identities=8% Similarity=0.077 Sum_probs=56.5
Q ss_pred HHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHH
Q 032873 28 SATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (131)
Q Consensus 28 ~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~ 104 (131)
+.+++...+++++......... .........|+++..+.++ ..+.+.+.+.+++.| |.+.+......++...+
T Consensus 36 ~tr~~V~~~a~elgY~p~~~a~--~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~ 111 (342)
T PRK10014 36 ATGERVNQAIEELGFVRNRQAS--ALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQG--RMVFLLQGGKDGEQLAQ 111 (342)
T ss_pred HHHHHHHHHHHHhCCCcCHHHH--hhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHH
Confidence 4455555566666553111100 0012233579999876444 344556677788888 56666677788888888
Q ss_pred HHHHHhhCCCeEEEEecC
Q 032873 105 YALSAKERGIKIIIVGDG 122 (131)
Q Consensus 105 ~~~~~~~~g~~ViIA~AG 122 (131)
+++...+.+++.||....
T Consensus 112 ~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 112 RFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred HHHHHHhCCCCEEEEeCC
Confidence 888887888888887654
No 65
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=86.75 E-value=3.9 Score=27.78 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
...+.+.+.++++|++++..+...+.-.+.+.++ +++.+++++|.+..+...+
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~---a~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRT---AKERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHH---HHhcCCCEEEEecCCCCCc
Confidence 4455666667778999888887655544555554 4467899999998877654
No 66
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=86.05 E-value=3.7 Score=35.98 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=54.1
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~-SDl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|+++.. ..+..++++.+.|+.-||+|.+. =+..+-+-+.+.+-++.+++.+++.|||.-|+|.
T Consensus 31 r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~ 98 (377)
T COG1454 31 RALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSV 98 (377)
T ss_pred ceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 678888765 56779999999999999887754 3446777777777888888999999999999985
No 67
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=85.97 E-value=4.2 Score=32.57 Aligned_cols=92 Identities=9% Similarity=0.074 Sum_probs=58.7
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHH
Q 032873 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (131)
Q Consensus 27 ~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~ 103 (131)
++.+++...+++++......... .....+...|+++..+.+| ....+.+.+.++++| |++.+.+.+..+++..
T Consensus 30 ~~tr~~V~~~a~elgY~pn~~a~--~l~~~~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~ 105 (341)
T PRK10703 30 EETRNAVWAAIKELHYSPSAVAR--SLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQR 105 (341)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHH--HHhhCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHH
Confidence 35566677777777654111000 0011233478888865443 234466777778888 5677778888899988
Q ss_pred HHHHHHhhCCCeEEEEecC
Q 032873 104 SYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 104 ~~~~~~~~~g~~ViIA~AG 122 (131)
++++....++++.||..++
T Consensus 106 ~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 106 AYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred HHHHHHHHcCCCEEEEecC
Confidence 9888888888887776554
No 68
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=85.90 E-value=6.5 Score=27.07 Aligned_cols=61 Identities=25% Similarity=0.174 Sum_probs=50.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCee---------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE---------------------IKILPPHQNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~e---------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViI 118 (131)
+=.++.|+-+.+..++.+...|.++|.... +-++|......++.+.++.++++|.+| |
T Consensus 6 ~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~v-i 84 (131)
T PF01380_consen 6 KRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPV-I 84 (131)
T ss_dssp SEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEE-E
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeE-E
Confidence 356888999999999999999988776321 778889999999999999999999988 4
Q ss_pred Eec
Q 032873 119 VGD 121 (131)
Q Consensus 119 A~A 121 (131)
++.
T Consensus 85 ~iT 87 (131)
T PF01380_consen 85 LIT 87 (131)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 69
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=85.74 E-value=5.8 Score=33.56 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=49.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEc---CCCChHHHHHHHHHHhhCC---CeEEEEecCcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~-fGI~~ev~V~S---AHRtp~~~~~~~~~~~~~g---~~ViIA~AG~aA 125 (131)
.++.|++++.-.-...++..+.|+. +++. +.+.+ .+++-+.+.+..+.+.+.| .+++||+-|++.
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~--~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv 95 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVH--ILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGAT 95 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCce--EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHH
Confidence 3688998887666788999999987 6664 44555 4778888888877666555 899999999853
No 70
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.25 E-value=9.6 Score=29.19 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=34.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|++++...++ ...++.+.+.+++.|. ++.+......++.-.++++....++++.||..+
T Consensus 2 igv~~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 2 IGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred eeEEeccccCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 5666655554 1233344555666664 445555566676666677666666776666543
No 71
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=85.11 E-value=6.6 Score=31.04 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=46.5
Q ss_pred CeEEEEeccC--CCHHHHHHHHHHHHHhCCCeeEEEE-cCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMESD--LDLPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS~--SDl~~~~ka~~~L~~fGI~~ev~V~-SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.+|.|+.||. .|..-+.++++.|++-||.+++--. ..+-++++++.|.+...+.+-.-||.+.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~ 173 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVP 173 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeC
Confidence 4788999987 4456677888999999999874444 4899999999999888543334444443
No 72
>PRK10586 putative oxidoreductase; Provisional
Probab=84.64 E-value=3.5 Score=35.24 Aligned_cols=63 Identities=10% Similarity=-0.036 Sum_probs=47.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.||.|..+-........+.|++-|+.+ .+.+-+-+.+...++.+... .+++++|++-|++.
T Consensus 36 ~~lvv~g~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~ 98 (362)
T PRK10586 36 RAVWIYGERAIAAAQPYLPPAFELPGAKH--ILFRGHCSESDVAQLAAASG-DDRQVVIGVGGGAL 98 (362)
T ss_pred eEEEEEChHHHHHHHHHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHH
Confidence 68899998776655567778899888754 45556666777777776554 57899999999864
No 73
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=84.49 E-value=2.4 Score=35.53 Aligned_cols=64 Identities=16% Similarity=-0.045 Sum_probs=45.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
++.|+.|..+=....++..+.|++.++.+. +.+-=.+-+.+.+.++.+.+.+++++||+-|++.
T Consensus 25 ~~liv~d~~~~~~~~~~l~~~L~~~~~~~~--~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~ 88 (347)
T cd08172 25 RPLIVTGPRSWAAAKPYLPESLAAGEAFVL--RYDGECSEENIERLAAQAKENGADVIIGIGGGKV 88 (347)
T ss_pred eEEEEECHHHHHHHHHHHHHHHhcCeEEEE--EeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 688888866533455566666655566442 3331177788888888888889999999999874
No 74
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=84.45 E-value=4.6 Score=32.91 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=38.1
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
.|+=|..+......++.+.|++-|+.|++..+ +.+....++++++...+.+++|++-|
T Consensus 4 ~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv~~GG 61 (293)
T TIGR03702 4 LILNGKQADNEDVREAVGDLRDEGIQLHVRVT---WEKGDAQRYVAEALALGVSTVIAGGG 61 (293)
T ss_pred EEEeCCccchhHHHHHHHHHHHCCCeEEEEEe---cCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 34444444555677788889999998887744 33455666776666677887775543
No 75
>PRK13055 putative lipid kinase; Reviewed
Probab=84.27 E-value=3.5 Score=34.45 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=38.4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|+.+.....+++.+.|++.|+.+++....-+ +....++++.+...+++++|++.|
T Consensus 14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vvv~GG 68 (334)
T PRK13055 14 GQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLIIAAGG 68 (334)
T ss_pred CchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEEEECC
Confidence 6656667778889999999998877665433 445556666666677888776644
No 76
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=84.18 E-value=3.7 Score=38.80 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=49.9
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHH--HhCCCeeEEEEc---CCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDL-DLPVMNDAARTLS--DFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~ka~~~L~--~fGI~~ev~V~S---AHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.++.|++|... +....+++.+.|+ ..|+.+ .+.+ .+.+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~--~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSv 551 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEY--EVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSP 551 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeE--EEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 47888887543 3347788888998 666654 4443 5777789999998888899999999999874
No 77
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=84.08 E-value=11 Score=30.09 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=42.7
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 60 ~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
+|++|+.+.+| ....+.+.+.++++|..|++.+...+..+++-.++++.+...+++-||..+
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~ 65 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNL 65 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 36667665444 233455666677766667788878888888888888777777787776554
No 78
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=83.82 E-value=5.1 Score=34.12 Aligned_cols=63 Identities=10% Similarity=-0.116 Sum_probs=44.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhC---CCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKER---GIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~---g~~ViIA~AG~aA 125 (131)
.+.|+++. +-.. ++..+.|++.|+.+.+. -+...=+.+.+.+.++.+++. ++++|||+-|+|.
T Consensus 27 ~~lvvtd~-~~~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~ 93 (347)
T cd08184 27 PAVFFVDD-VFQG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGST 93 (347)
T ss_pred eEEEEECc-chhh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHH
Confidence 35566643 3332 56777888889887654 234566667788888777766 8999999999874
No 79
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=83.81 E-value=8.7 Score=27.75 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=41.8
Q ss_pred EEEEeccC----CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 61 VGIIMESD----LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 61 V~IimGS~----SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|++|+.+. .-....+.+...++++|..+++.+......|+...+.++....++++.+|....
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 67 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPS 67 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 56666433 122333445556777677788888888888888888887777778888776544
No 80
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=83.36 E-value=12 Score=28.34 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=39.7
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 60 ~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
+|++++++.+| ....+.+.+.++++|+.+.+ .+.=..|+...++++..-.++++.||..++.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~ 65 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQKVDAIIIQHGR 65 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 36777776555 23445666777888865544 4433467777777776666678887776653
No 81
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=83.19 E-value=6.8 Score=30.65 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCC---ChHHHHHHHHHHhhCCCeEEE
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPHQ---NCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAHR---tp~~~~~~~~~~~~~g~~ViI 118 (131)
+++.+.++.+.+++.|+++.+.+..+.| +|+++.++++.+.+-|++.|.
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 6888999999999999999999987885 788899999988888876443
No 82
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=83.13 E-value=9.8 Score=30.08 Aligned_cols=91 Identities=5% Similarity=0.070 Sum_probs=56.5
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHH
Q 032873 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (131)
Q Consensus 27 ~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~ 103 (131)
++.+++....++++......... .....+...|++++.+.+| ....+.+.+.|++.| |++.+......+++..
T Consensus 27 ~~tr~rV~~~a~~lgY~pn~~a~--~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~ 102 (327)
T PRK10423 27 EAITAKVEAAIKELNYAPSALAR--SLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERG--YSLVLCNTEGDEQRMN 102 (327)
T ss_pred HHHHHHHHHHHHHHCCCccHHHH--HHhhCCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHH
Confidence 35566666666666653110000 0012234579999875443 345566777888888 5566666677888888
Q ss_pred HHHHHHhhCCCeEEEEec
Q 032873 104 SYALSAKERGIKIIIVGD 121 (131)
Q Consensus 104 ~~~~~~~~~g~~ViIA~A 121 (131)
++++...+++++-+|...
T Consensus 103 ~~~~~l~~~~vdGiI~~~ 120 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLC 120 (327)
T ss_pred HHHHHHHHcCCCEEEEeC
Confidence 888777777887777654
No 83
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=83.12 E-value=10 Score=30.09 Aligned_cols=90 Identities=9% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHH
Q 032873 28 SATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (131)
Q Consensus 28 ~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~ 104 (131)
+.+++....++++..........+. ......|++++.+-+| ....+.+.+.+++.|. .+.+......+++..+
T Consensus 32 ~tr~rV~~~a~~lgY~pn~~a~~l~--~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~ 107 (327)
T TIGR02417 32 ETVERVMAVVREQGYQPNIHAASLR--AGRSRTIGLVIPDLENYSYARIAKELEQQCREAGY--QLLIACSDDNPDQEKV 107 (327)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHhh--cCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHH
Confidence 5666777777777664111110001 1233579999875444 3445666777778875 5566667778888888
Q ss_pred HHHHHhhCCCeEEEEec
Q 032873 105 YALSAKERGIKIIIVGD 121 (131)
Q Consensus 105 ~~~~~~~~g~~ViIA~A 121 (131)
+++....++++-+|...
T Consensus 108 ~~~~l~~~~vdgiIi~~ 124 (327)
T TIGR02417 108 VIENLLARQVDALIVAS 124 (327)
T ss_pred HHHHHHHcCCCEEEEeC
Confidence 88777777888776654
No 84
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=83.07 E-value=8.4 Score=24.28 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhC-C-CeEEEE
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-G-IKIIIV 119 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~-g-~~ViIA 119 (131)
++=+.|.++...|++.||+|+..-+. ..++...++.+..... + ..|||.
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~--~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVD--GDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECC--CCHHHHHHHHHHhCCCCccCEEEEC
Confidence 45599999999999999999866554 4477766666544332 3 355554
No 85
>PRK13337 putative lipid kinase; Reviewed
Probab=83.05 E-value=3.7 Score=33.58 Aligned_cols=54 Identities=20% Similarity=0.181 Sum_probs=37.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|+........++...|++.|++|++..+. .+.+..++++.+..++.+++|++-|
T Consensus 13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~---~~~~a~~~a~~~~~~~~d~vvv~GG 66 (304)
T PRK13337 13 GRELFKKNLPDVLQKLEQAGYETSAHATT---GPGDATLAAERAVERKFDLVIAAGG 66 (304)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEEec---CCCCHHHHHHHHHhcCCCEEEEEcC
Confidence 44444455667788899999988887775 3466666676666777887776544
No 86
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=82.99 E-value=4.5 Score=33.75 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=46.1
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 65 mGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
.|-..-....+++.+.|++.|..+.++++... ....++++.+...+++.+||+.|
T Consensus 13 sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via~GG 67 (301)
T COG1597 13 SGKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIAAGG 67 (301)
T ss_pred ccccchhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEEecC
Confidence 34445667788999999999999999998655 78889999988889999999877
No 87
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.95 E-value=14 Score=28.17 Aligned_cols=60 Identities=7% Similarity=0.162 Sum_probs=31.1
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|+++....+| ....+.+.+.++++|..|++.+......+++..++++.+.+++++-+|..
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~ 64 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLN 64 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4455544333 22333444555565555666555555566666566655555555555443
No 88
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=82.84 E-value=14 Score=27.98 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=33.5
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|+|++-+.+| ....+.+.+.++++|. .+-+.+....+++..++++...+++++.+|..
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~ 62 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGY--TLLVASSGYDLDREYAQARKLLERGVDGLALI 62 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCC--EEEEecCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 5555543333 3334556666777774 44445666667766666666666666665544
No 89
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=82.55 E-value=14 Score=27.78 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=40.5
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|+|++...++ ....+.+.+.++++|. .+.+......|++..++++...+.+++.+|...
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~ 63 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGY--QMLLMNTNFSIEKEIEALELLARQKVDGIILLA 63 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5666654333 2455566667777774 555666778888888888877778888888764
No 90
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.41 E-value=5.8 Score=33.48 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=43.6
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.| ..+.+...+.|+++||.+++.-.++.-+.+++.+.++...+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNA 87 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 477888887765 45556668899999999999999999999999999976643
No 91
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=82.24 E-value=5.9 Score=31.93 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=48.4
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
.-+.-+.||...++++.+..++.|....+.+.-++|. |+++.++++.+.+-|++.| ..+-.
T Consensus 102 iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i-~l~DT 163 (263)
T cd07943 102 VRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV-YVTDS 163 (263)
T ss_pred EEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE-EEcCC
Confidence 3334588999999999999999999888888667765 8888889998888888854 55443
No 92
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=82.19 E-value=10 Score=24.30 Aligned_cols=31 Identities=29% Similarity=0.210 Sum_probs=24.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHhhCCCeEEE
Q 032873 88 YEIKILPPHQNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 88 ~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViI 118 (131)
--+-++|..+...++.+.++.++++|.+++.
T Consensus 49 d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 49 DVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 3377788888888899999999998887543
No 93
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=81.87 E-value=11 Score=23.88 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=38.5
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
.|.|+.-+..+.+.+.+.+..|.+-|+.+++.... +.+++..+ ++...|+..+|.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~~~~---~a~~~~~~~~i~i 58 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKKQFK---YADRSGARFAVIL 58 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHHHHH---HHHHcCCCEEEEE
Confidence 57788777778888888888999999987775543 34444444 4556777654444
No 94
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=81.82 E-value=5.2 Score=24.66 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCC-eEEE
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI-KIII 118 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~-~ViI 118 (131)
..=+.|+++.+.|++.|++|+..=++-+. +...++.+.....+. .|||
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEE
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEE
Confidence 56689999999999999999877776663 555555544333333 5554
No 95
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=81.70 E-value=2.7 Score=31.65 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=38.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
.|.|+=-|. ...+..+..|.+-| ..|...|+....+.++++ ..+++|++.|...-+
T Consensus 30 ~v~VvGrs~---~vG~pla~lL~~~g----atV~~~~~~t~~l~~~v~-----~ADIVvsAtg~~~~i 85 (140)
T cd05212 30 KVLVVGRSG---IVGAPLQCLLQRDG----ATVYSCDWKTIQLQSKVH-----DADVVVVGSPKPEKV 85 (140)
T ss_pred EEEEECCCc---hHHHHHHHHHHHCC----CEEEEeCCCCcCHHHHHh-----hCCEEEEecCCCCcc
Confidence 466554443 46777777777655 567777877666766664 369999999987433
No 96
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=81.24 E-value=6.4 Score=32.68 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=38.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc--CCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~S--AHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.++.|++|..+ .+++.+.|++.++ .++.+.. -.-+.+++.+.++... +.++|||+-|++.
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~--~~d~iIaiGGGsv 87 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVEEVSNSDAEEIGARARSIP--NVDAVVGIGGGKV 87 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEecCCCccCHHHHHHHHHhcc--CCCEEEEeCCcHH
Confidence 36889988776 7788888888777 3444432 1233344444443332 5899999999864
No 97
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=80.98 E-value=1.8 Score=33.53 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=37.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpG 129 (131)
+-+++.|... .+.++.+..|.+- ...|.+.|...+.+.++.+ ..+++|+++|..+-+++
T Consensus 37 k~v~VvGrs~--~VG~Pla~lL~~~----~atVt~~h~~T~~l~~~~~-----~ADIVVsa~G~~~~i~~ 95 (160)
T PF02882_consen 37 KKVVVVGRSN--IVGKPLAMLLLNK----GATVTICHSKTKNLQEITR-----RADIVVSAVGKPNLIKA 95 (160)
T ss_dssp -EEEEE-TTT--TTHHHHHHHHHHT----T-EEEEE-TTSSSHHHHHT-----TSSEEEE-SSSTT-B-G
T ss_pred CEEEEECCcC--CCChHHHHHHHhC----CCeEEeccCCCCcccceee-----eccEEeeeecccccccc
Confidence 4445555432 3566677777766 4567778988888888874 37999999999887764
No 98
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=80.78 E-value=11 Score=33.56 Aligned_cols=89 Identities=9% Similarity=-0.066 Sum_probs=58.8
Q ss_pred eeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEE----eccCCCHHHHH-HHHHHHHHhCCCeeEEEE
Q 032873 19 IPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGII----MESDLDLPVMN-DAARTLSDFGVPYEIKIL 93 (131)
Q Consensus 19 itVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~Ii----mGS~SDl~~~~-ka~~~L~~fGI~~ev~V~ 93 (131)
.+.-..|.+.+..-++-+.+.++.. . .+.++.|| .|..+.....+ ++...|++.|+.+++.++
T Consensus 84 ~~~~~~~~~~~~~w~~~~~~~~~~~-----------~-~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T 151 (481)
T PLN02958 84 FVFEPLSDESRRLWCQKLRDYLDSL-----------G-RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQET 151 (481)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhc-----------c-CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEec
Confidence 4556666667776666666555432 1 11245565 47666666665 567799999999888766
Q ss_pred cCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 94 PPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 94 SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
- .+....++++++...+++.||++-|
T Consensus 152 ~---~~ghA~~la~~~~~~~~D~VV~vGG 177 (481)
T PLN02958 152 K---YQLHAKEVVRTMDLSKYDGIVCVSG 177 (481)
T ss_pred c---CccHHHHHHHHhhhcCCCEEEEEcC
Confidence 4 3466677787776677888887655
No 99
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=80.39 E-value=14 Score=29.29 Aligned_cols=91 Identities=10% Similarity=0.065 Sum_probs=54.1
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHH
Q 032873 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (131)
Q Consensus 27 ~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~ 103 (131)
++-+++....++++......... .....+...|++++...++ ....+.+.+.+++.|. ++.+...+..++...
T Consensus 32 ~~tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~--~~~~~~~~~~~~~~~ 107 (328)
T PRK11303 32 DKTVEKVMAVVREHNYHPNAVAA--GLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGY--QLLIACSDDQPDNEM 107 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHH--HhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHH
Confidence 35566666666676653110000 0012234579999865444 2234456666777885 455566677788777
Q ss_pred HHHHHHhhCCCeEEEEec
Q 032873 104 SYALSAKERGIKIIIVGD 121 (131)
Q Consensus 104 ~~~~~~~~~g~~ViIA~A 121 (131)
++++.....+++-+|...
T Consensus 108 ~~~~~l~~~~vdgiIi~~ 125 (328)
T PRK11303 108 RCAEHLLQRQVDALIVST 125 (328)
T ss_pred HHHHHHHHcCCCEEEEcC
Confidence 888777777888777654
No 100
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.30 E-value=22 Score=26.90 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=40.3
Q ss_pred EEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 61 VGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 61 V~IimGS~---SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|+|++-+. -.....+.+.+.++++| |++.+......++...++++....++++.+|..+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAG--YDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcC--CeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 55666432 23555666777778877 46666777777877777887777777887776543
No 101
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=79.95 E-value=21 Score=26.78 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=35.8
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|+++..+.+| ....+.+.+.++++|+ ++.+......++...++++....++++.||..+
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~ 63 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGY--QVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNP 63 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeC
Confidence 5566655444 4455666677777774 444555555666666777666666776555543
No 102
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=79.28 E-value=16 Score=29.37 Aligned_cols=91 Identities=8% Similarity=-0.025 Sum_probs=56.7
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHH
Q 032873 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (131)
Q Consensus 27 ~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~ 103 (131)
++-+++....++++.......... .. ......|++++.+-+| ....+.+.+.+++.|. .+.+...+..+++..
T Consensus 30 ~~tr~rV~~~a~elgY~pn~~ar~-l~-~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~ 105 (343)
T PRK10727 30 EASRLAVHSAMESLSYHPNANARA-LA-QQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGN--FLLIGNGYHNEQKER 105 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHh-hh-hCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHH
Confidence 456666666677776541111100 01 2234579999876544 2345567777888885 566666777888888
Q ss_pred HHHHHHhhCCCeEEEEec
Q 032873 104 SYALSAKERGIKIIIVGD 121 (131)
Q Consensus 104 ~~~~~~~~~g~~ViIA~A 121 (131)
++++....++++-+|..+
T Consensus 106 ~~i~~l~~~~vdgiIi~~ 123 (343)
T PRK10727 106 QAIEQLIRHRCAALVVHA 123 (343)
T ss_pred HHHHHHHhcCCCEEEEec
Confidence 888777777887777654
No 103
>PRK00861 putative lipid kinase; Reviewed
Probab=78.83 E-value=6.9 Score=31.82 Aligned_cols=53 Identities=23% Similarity=0.205 Sum_probs=36.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|+.+.....+++...|++ +++|++..+... ....++++.+...+.+++|++-|
T Consensus 14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~---~~a~~~a~~~~~~~~d~vv~~GG 66 (300)
T PRK00861 14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPE---IGADQLAQEAIERGAELIIASGG 66 (300)
T ss_pred CCCchhhhHHHHHHHHHh-cCceEEEEccCC---CCHHHHHHHHHhcCCCEEEEECC
Confidence 555555667788888887 578888887654 34456676666677888776544
No 104
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.72 E-value=9.1 Score=32.33 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=43.9
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.| .-.++.-.+.|+++||.+++.-.++.-+-+++.+.++...+
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 478888887754 45566778899999999999999999999999999976643
No 105
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.59 E-value=8.7 Score=32.51 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=44.3
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~-SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+ ++.-.++...+.|+++||.+++.-.+..-+.+++.+.++...+
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 35 KLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788888877 4566677778999999999999999999999999999976643
No 106
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.32 E-value=24 Score=26.88 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=37.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|+++..+.+| ....+.+.+.++++| |.+.+...+..++...++++....++++-+|..+
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAG--LRVILCNTDEDPEKEAMYLELMEEERVTGVIFAP 63 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 5555544333 334556667777887 4555666677787777777777676777666543
No 107
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.98 E-value=3.2 Score=35.12 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCe-------------------------eEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 73 VMNDAARTLSDFGVPY-------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~-------------------------ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+...+.++|+.+|+++ ..+|+..|...+.+.++.+. ++++|+++|.+.-+
T Consensus 142 Tp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~-----ADIvIsAvGk~~~i 216 (284)
T PRK14177 142 TPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQ-----ADIIVGAVGKPEFI 216 (284)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEeCCCcCcc
Confidence 4566777888888865 37888889776777777653 69999999998755
Q ss_pred c
Q 032873 128 S 128 (131)
Q Consensus 128 p 128 (131)
.
T Consensus 217 ~ 217 (284)
T PRK14177 217 K 217 (284)
T ss_pred C
Confidence 3
No 108
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.92 E-value=5.6 Score=33.67 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=44.3
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+ .-+.+...+.|+++||.+++...++--+.+++.+.++...+
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 84 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNA 84 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578888998765 45667778899999999999999999999999999976643
No 109
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.74 E-value=3.6 Score=34.93 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=43.1
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+. +.-..+...+.|+++||.+++...+..-+-+++.+.++...+
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNA 86 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46777777654 455677778899999999999999999999999999976643
No 110
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.71 E-value=5.5 Score=33.74 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=43.8
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+ .-+++...+.|+++||.+++.-.+..-+-+++.+.++...+
T Consensus 28 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 28 GLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578888887654 45667778889999999999999999999999999977643
No 111
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=77.44 E-value=12 Score=32.41 Aligned_cols=67 Identities=9% Similarity=0.101 Sum_probs=45.0
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEE--------cCCCChHHHHHHHHHHhhCCCe---EEEEecCcC
Q 032873 59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL--------PPHQNCKEALSYALSAKERGIK---IIIVGDGVE 124 (131)
Q Consensus 59 ~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~--------SAHRtp~~~~~~~~~~~~~g~~---ViIA~AG~a 124 (131)
.++.||+++.-. .+..++..+.|++-|+++.+..- .++-.|+...++.+.+.+.+++ ++||+-|++
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs 122 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA 122 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence 368888865433 24567888888888887653221 2343446677777777776776 999999986
Q ss_pred C
Q 032873 125 A 125 (131)
Q Consensus 125 A 125 (131)
.
T Consensus 123 v 123 (389)
T PRK06203 123 V 123 (389)
T ss_pred H
Confidence 4
No 112
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.42 E-value=3.1 Score=35.11 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCee-------------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~e-------------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+.+.+.++|+.+|++++ .+|++.|+..+.+.++.+. .+++|+++|.+.-+
T Consensus 141 Tp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~-----ADIvIsAvGkp~~i 215 (282)
T PRK14180 141 TPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTK-----ADILIVAVGKPNFI 215 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhh-----cCEEEEccCCcCcC
Confidence 45666777777777643 6788889887777777653 69999999998765
Q ss_pred c
Q 032873 128 S 128 (131)
Q Consensus 128 p 128 (131)
+
T Consensus 216 ~ 216 (282)
T PRK14180 216 T 216 (282)
T ss_pred C
Confidence 4
No 113
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=77.37 E-value=25 Score=27.49 Aligned_cols=60 Identities=10% Similarity=0.295 Sum_probs=39.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|++|..+.+| ....+.+.+.++++|+ ++.+......|++..++++.+...+++.||..+.
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGA--EVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 6677765544 2333455666777775 4555666667887778887777777887776653
No 114
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=77.18 E-value=26 Score=26.42 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=39.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|++++-+.++ ....+.+.+.++++|. ++.+...+..+++..+.++.....+++.+|..
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~ 62 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHGY--KVVLLQTNYDKEKELEYLELLKTKQVDGLILC 62 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 5566654333 4455677777888874 55556667888888888877777778766654
No 115
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.16 E-value=10 Score=32.31 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=44.4
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~-SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+ ++.-..+...+.|+++||.+++.-.++.-+.+++.+.++...+
T Consensus 34 ~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 34 GLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQ 87 (297)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788888876 4566777788899999999999999999999999999976643
No 116
>PRK13054 lipid kinase; Reviewed
Probab=77.08 E-value=16 Score=29.80 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=38.5
Q ss_pred eEEEEe-ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 60 IVGIIM-ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 60 ~V~Iim-GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
++.+|+ |..+-.....++...|++-|++|++..+ +.+....++++.+...+++++|++-|
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vvv~GG 65 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVT---WEKGDAARYVEEALALGVATVIAGGG 65 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEe---cCCCcHHHHHHHHHHcCCCEEEEECC
Confidence 344444 3332345677778889999998877544 33555677777766677888775544
No 117
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=77.02 E-value=16 Score=29.07 Aligned_cols=90 Identities=9% Similarity=0.001 Sum_probs=55.9
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHH
Q 032873 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (131)
Q Consensus 27 ~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~ 103 (131)
++.+++....++++......... .........|++++..-++ ....+.+.+.+++.| |++.+......++...
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~ 109 (331)
T PRK14987 34 VALRGKIAAALDELGYIPNRAPD--ILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHG--YQTMLAHYGYKPEMEQ 109 (331)
T ss_pred HHHHHHHHHHHHHhCCCccHHHH--HHhhCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHCC--CEEEEecCCCCHHHHH
Confidence 35677777777777653110000 0011233579999865544 345566777888888 4566666667787777
Q ss_pred HHHHHHhhCCCeEEEEe
Q 032873 104 SYALSAKERGIKIIIVG 120 (131)
Q Consensus 104 ~~~~~~~~~g~~ViIA~ 120 (131)
++++....++++-+|..
T Consensus 110 ~~~~~~~~~~vdgiI~~ 126 (331)
T PRK14987 110 ERLESMLSWNIDGLILT 126 (331)
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 77777777788777764
No 118
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.98 E-value=7.4 Score=32.85 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=43.4
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
.++.|+.|.+. +.-..+...+.|+++||.+++.-.++.-+.+++.+.++...
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN 84 (282)
T PRK14166 32 CLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLN 84 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 47888888764 45566777889999999999999999999999999997664
No 119
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.76 E-value=27 Score=26.70 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=22.1
Q ss_pred HHHHHHHHHhC---CCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 75 NDAARTLSDFG---VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 75 ~ka~~~L~~fG---I~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
+.+.+.++++| ..|++.+.++-..++...++++....++++.||..
T Consensus 19 ~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~ 67 (274)
T cd06311 19 WHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVIL 67 (274)
T ss_pred HHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 33444444442 44555555554445544455554544555554443
No 120
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=76.63 E-value=14 Score=23.71 Aligned_cols=50 Identities=18% Similarity=0.060 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCC-CeEEEE
Q 032873 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (131)
Q Consensus 68 ~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g-~~ViIA 119 (131)
.+.=|.|.+|...|++.||+|+..=+. ..|+...++.+...... +.|||.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~--~~~~~~~~~~~~~g~~~vP~i~i~ 56 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVD--GDPALRDEMMQRSGRRTVPQIFIG 56 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEec--CCHHHHHHHHHHhCCCCcCEEEEC
Confidence 456789999999999999999876554 45666666664333333 355554
No 121
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=76.52 E-value=10 Score=30.57 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=37.5
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 60 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 60 ~V~Iim----GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
++.||. |+.......+++.+.|++.|+++++..+. ++. ...++++.+.+.+++++|++-|
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~-~~~--~~~~~~~~~~~~~~d~ivv~GG 66 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTW-EKG--DAARYVEEARKFGVDTVIAGGG 66 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEec-Ccc--cHHHHHHHHHhcCCCEEEEECC
Confidence 455543 55555677888999999999988875542 331 2234454444556777776544
No 122
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=76.51 E-value=28 Score=26.55 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=39.1
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|+|++.+.+| ..+.+.+.+.++++|+.. .+..+-..++.-.+.++..-..+++.||..++
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKGYSL--LLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHcCCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 5666654443 355667777778887544 44555667777777777777777877776544
No 123
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=76.47 E-value=22 Score=26.69 Aligned_cols=57 Identities=18% Similarity=0.392 Sum_probs=27.6
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
|+++..+.+| ....+.+.+.++++|+ .+.+......|++..++++....++++.+|.
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~ 61 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGY--ELTVLDAQNDAAKQLNDIEDLITRGVDAIII 61 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCc--eEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4445544333 2334455555556653 3334444445555555555554445555444
No 124
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.43 E-value=27 Score=26.55 Aligned_cols=58 Identities=12% Similarity=0.234 Sum_probs=37.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|++++.+.++ ....+.+.+.++++|. ++.+......++...++++....++++-+|..
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 62 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGY--TVLLCNTYRGGVSEADYVEDLLARGVRGVVFI 62 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 5566644333 2344566677777774 55566677778877778777777778766654
No 125
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.34 E-value=29 Score=26.43 Aligned_cols=58 Identities=9% Similarity=0.179 Sum_probs=36.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|+++..+.++ ....+.+.+.++++|. ++.+......++...++++.....+++-+|..
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy--~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~ 62 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGL--SLVLCATRNRPERELTYLRWLDTNHVDGLIFV 62 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 5666654333 3456667777788874 44444434467777777777777777766654
No 126
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=76.22 E-value=22 Score=30.27 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=46.4
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEE
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~Vi 117 (131)
|.-+.++.+.+.+..+..++.|....+.+.-+|+. |+++.++++.+.+-|++.|
T Consensus 107 i~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i 161 (337)
T PRK08195 107 VATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred EEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEE
Confidence 33478899999999999999999999999999987 6888899988888888764
No 127
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.17 E-value=4.6 Score=34.14 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=43.8
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|..|.+.+ .-+.+...+.|+++||.+++...+..-+.+++.+.++...+
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 34 GLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467788887654 55667778899999999999999999999999999976643
No 128
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=76.15 E-value=31 Score=25.99 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=36.8
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|+++..+.+| ....+.+.+.+++.|. .+.+...+..|+...++++...+.+++.+|..+
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKY--NIILSNSDNDKEKELKVLNNLLAKQVDGIIFMG 63 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeC
Confidence 5666654333 3344555566777764 555556677888777777766666777766543
No 129
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=76.10 E-value=13 Score=24.63 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=36.9
Q ss_pred EEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 61 VGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 61 V~IimGS~---SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|+|+.=+. +-.+.+.+.+..|.+.|+.+++.- -++++.+-.+++ ...|+..+|.+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~a---~~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQIKYA---DKLGIPFIIII 59 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHHH---HHTTESEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHHH---hhcCCeEEEEE
Confidence 55665555 557788999999999998766665 556666554444 45677655544
No 130
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=75.98 E-value=30 Score=26.18 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=39.6
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|++++.+.++ ....+.+.+.++++|. .+.+......+++..++++....++++.+|...
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGY--NLILCNTEGDPERQRSYLRMLAQKRVDGLLVMC 63 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEec
Confidence 6777765433 2334556677788884 555666677888888888877777887666543
No 131
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=75.92 E-value=28 Score=27.50 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=35.5
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEE-cCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~-SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|+++..+.+| ..+.+.+.+.++++|+ ++.+. .....++...++++....++++-||..+
T Consensus 2 I~vi~~~~~~~f~~~i~~gi~~~a~~~g~--~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 2 IAFVPKVTGIPYFNRMEEGAKEAAKELGV--DAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHhCC--eEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 5666655555 2344555666677774 44443 3455677777777666666677666654
No 132
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=75.76 E-value=31 Score=26.27 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=15.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 85 GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 85 GI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|..+++.+....-.+++..+.++.+..++++.||..
T Consensus 32 g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~ 67 (272)
T cd06300 32 GLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIIN 67 (272)
T ss_pred CCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 443344444333344444444444434444444443
No 133
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=75.68 E-value=16 Score=28.90 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=40.3
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC-------------ChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 57 ~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHR-------------tp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
..+.|.|.+|+...- ++.+.|+++. .+.+.|.+.+. +.+.+.+++. . ++++|+-+|-
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~~-~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~---~--ad~vIs~~G~ 260 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKALP-DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMA---A--ADLVISKGGY 260 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhCC-CCeEEEEcCCcccccCCCEEEeecChHHHHHHHH---h--CCEEEECCCH
Confidence 346799999886554 6677888877 57777777665 2244555543 3 6999999996
Q ss_pred C
Q 032873 124 E 124 (131)
Q Consensus 124 a 124 (131)
+
T Consensus 261 ~ 261 (318)
T PF13528_consen 261 T 261 (318)
T ss_pred H
Confidence 5
No 134
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=75.63 E-value=29 Score=25.48 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=40.8
Q ss_pred EEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 61 VGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 61 V~IimGS~---SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
|+++.-.. .-....+.+.+.++++|+ ++.+...+..++...+.++....++++.+|..+...
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~ 66 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL 66 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 55555332 113344455566777875 566667777888888888777777899888866543
No 135
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=75.52 E-value=15 Score=26.17 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=38.6
Q ss_pred CeEEEEecc--CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS--~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..|.|+.-+ +.....+.+.+..|.+.|+.+++... +...+-.+++ ...|+..+|-+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~---~sl~kqlk~A---~k~g~~~~iiiG 85 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS---GSIGRRYARQ---DEIGTPFCVTVD 85 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC---CCHHHHHHHh---HhcCCCEEEEEC
Confidence 457777766 56677888888888888998887652 6666655555 467776554443
No 136
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=75.31 E-value=24 Score=27.20 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 77 AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 77 a~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
+.+.++++|. .+.+.... .+++..+.++....++++.||.
T Consensus 21 i~~~~~~~g~--~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii 60 (289)
T cd01540 21 AKKAAKEKGF--TVVKIDVP-DGEKVLSAIDNLGAQGAKGFVI 60 (289)
T ss_pred HHHHHHHcCC--EEEEccCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 3444555553 33333333 4444444444444444544443
No 137
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.26 E-value=4.2 Score=34.56 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCe-----------------------------eEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 73 VMNDAARTLSDFGVPY-----------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~-----------------------------ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
+...+.++|+.+|+++ ..+|+..|+....+.++.+. .+++|+++|.
T Consensus 144 Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~-----ADIvVsAvGk 218 (297)
T PRK14168 144 TPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQR-----ADILIVAAGV 218 (297)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhh-----CCEEEEecCC
Confidence 5566777888888764 25788889877777777753 6999999999
Q ss_pred CCcCc
Q 032873 124 EAHLS 128 (131)
Q Consensus 124 aAhLp 128 (131)
..-+.
T Consensus 219 p~~i~ 223 (297)
T PRK14168 219 PNLVK 223 (297)
T ss_pred cCccC
Confidence 87654
No 138
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=75.13 E-value=24 Score=24.32 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=42.0
Q ss_pred EEeccCCCHHHHHHHHHHHHHhC-CCee-------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 63 IIMESDLDLPVMNDAARTLSDFG-VPYE-------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 63 IimGS~SDl~~~~ka~~~L~~fG-I~~e-------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.+.|.-+-...++.+...|.++| +++. +-++|-....+++.+.++.++++|++|+.--.
T Consensus 3 ~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~ 81 (126)
T cd05008 3 LIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITN 81 (126)
T ss_pred EEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 45566666777777777777765 5432 56677777888899999999999987764433
No 139
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.07 E-value=12 Score=31.67 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=43.7
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+. +.-+.+...+.|+++||.+++.-.+..-+.+++.+.++...+
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47888888664 455666778889999999999999999999999999976643
No 140
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.92 E-value=5 Score=33.89 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=43.8
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+ .-+.+...+.|+++||.+++.-.++..+.+++.+.++...+
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 478888887755 45566778889999999999999999999999999976643
No 141
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.91 E-value=4.1 Score=34.61 Aligned_cols=51 Identities=8% Similarity=0.179 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCee-------------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~e-------------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+...+.++|+.+||+++ .+|+..|.....+.++.+. ++++|+++|...-+
T Consensus 143 Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~-----ADIvVsAvGkp~~i 217 (294)
T PRK14187 143 TPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSK-----ADILVAAVGIPNFV 217 (294)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCcc
Confidence 56777888888888762 5888899888778777753 69999999998765
Q ss_pred c
Q 032873 128 S 128 (131)
Q Consensus 128 p 128 (131)
+
T Consensus 218 ~ 218 (294)
T PRK14187 218 K 218 (294)
T ss_pred C
Confidence 4
No 142
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=74.77 E-value=16 Score=23.74 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=36.9
Q ss_pred eEEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 60 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 60 ~V~IimGS~---SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.|.|+.-+. .+++.+.+.+..|...|+.+++... .+...+-.++ +...|+..+|-+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~--~~~~~k~~~~---a~~~g~~~~iiig 62 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR--ERKIGKKFRE---ADLRGVPFAVVVG 62 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC--CcCHhHHHHH---HHhCCCCEEEEEC
Confidence 467776666 6788888888889999986665432 3455555444 4567766544443
No 143
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=74.68 E-value=3.9 Score=35.89 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCee-------------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~e-------------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+.+.+.++|+.+||+++ .+|+..|.....+.++.+. ++|+|+++|...-+
T Consensus 214 Tp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~-----ADIVIsAvGkp~~i 288 (364)
T PLN02616 214 TPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRE-----ADIIISAVGQPNMV 288 (364)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcC
Confidence 45668889999998754 6788889888888888753 69999999998755
Q ss_pred c
Q 032873 128 S 128 (131)
Q Consensus 128 p 128 (131)
.
T Consensus 289 ~ 289 (364)
T PLN02616 289 R 289 (364)
T ss_pred C
Confidence 4
No 144
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=74.50 E-value=13 Score=24.46 Aligned_cols=57 Identities=19% Similarity=0.062 Sum_probs=38.0
Q ss_pred eEEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 60 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 60 ~V~IimGS~---SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.|+|+.-+. .+.+.+.+.+..|.+.|+.+++... -+.+.+-.+ ++...|+..+|.+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~--~~~l~k~i~---~a~~~g~~~~iiiG 62 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR--NERPGVKFA---DADLIGIPYRIVVG 62 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC--CCCcccchh---HHHhcCCCEEEEEC
Confidence 578887766 4677788888888888988877532 345544444 45567887655543
No 145
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=74.25 E-value=18 Score=30.93 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=46.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChHHHHHHHHHHhhCCC---eEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~S---AHRtp~~~~~~~~~~~~~g~---~ViIA~AG~aA 125 (131)
++.|++++.-.-...+...+.|+ ++ ++.+.+ .+++.+.+.+..+.+.+.|+ +++||+-|++.
T Consensus 21 r~lIVtD~~v~~l~~~~l~~~L~--~~--~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv 88 (346)
T cd08196 21 NDVFIVDANVAELYRDRLDLPLD--AA--PVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGII 88 (346)
T ss_pred eEEEEECccHHHHHHHHHHHHhc--CC--eEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHH
Confidence 67888877554446666666665 33 444555 59999999999988888888 89999999874
No 146
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=74.25 E-value=26 Score=24.24 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=43.1
Q ss_pred EEeccCCCHHHHHHHHHHHHHhCCCe--------------------eEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 63 IIMESDLDLPVMNDAARTLSDFGVPY--------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 63 IimGS~SDl~~~~ka~~~L~~fGI~~--------------------ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
.+.|+-+-...++.....|..+|++. -+-++|--+..+++.+.++.++++|++|+--...
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 4 VVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred EEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34455555556666665565555543 2667788888899999999999999887665554
Q ss_pred cCCcC
Q 032873 123 VEAHL 127 (131)
Q Consensus 123 ~aAhL 127 (131)
..+-|
T Consensus 84 ~~s~l 88 (128)
T cd05014 84 PNSTL 88 (128)
T ss_pred CCCch
Confidence 44433
No 147
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.13 E-value=4.3 Score=34.48 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=26.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+|+..|.....+.++.+. .+++|+++|.+.-++
T Consensus 183 atVtv~hs~T~~l~~~~~~-----ADIvIsAvGkp~~i~ 216 (297)
T PRK14186 183 ATVTIAHSRTQDLASITRE-----ADILVAAAGRPNLIG 216 (297)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 5677778888778887753 699999999887554
No 148
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.99 E-value=6 Score=33.42 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=44.1
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|..|.+. +.-..+...+.|+++||.+++.-.++.-+.+++.+.++...+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 47778888664 456677788999999999999999999999999999977643
No 149
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=73.98 E-value=19 Score=30.67 Aligned_cols=52 Identities=10% Similarity=0.039 Sum_probs=44.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEE
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~Vi 117 (131)
-+.+|.+..++..+..+++|......+.-+|+. |+++.++++.+.+-|++.|
T Consensus 108 ~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 108 THCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred eccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 367888899999999999999888888888976 5788889888888888764
No 150
>PRK10329 glutaredoxin-like protein; Provisional
Probab=73.96 E-value=24 Score=23.74 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=28.5
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~ 106 (131)
+.+.++. +.|..+.+.|++.||+|+..=+. ..|+...++.
T Consensus 5 lYt~~~C-p~C~~ak~~L~~~gI~~~~idi~--~~~~~~~~~~ 44 (81)
T PRK10329 5 IYTRNDC-VQCHATKRAMESRGFDFEMINVD--RVPEAAETLR 44 (81)
T ss_pred EEeCCCC-HhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHH
Confidence 4444444 99999999999999999865544 4565555443
No 151
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.96 E-value=6.3 Score=33.32 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=42.5
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
.++.|+.|.+.+ .-+++...+.|+++||.+++.-.+..-+.+++.+.++...
T Consensus 32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN 84 (282)
T PRK14182 32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLN 84 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888887654 4555666889999999999999999999999999987654
No 152
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=73.76 E-value=16 Score=29.33 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec-CcCCcCcCC
Q 032873 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD-GVEAHLSGT 130 (131)
Q Consensus 74 ~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A-G~aAhLpGv 130 (131)
-+++.+.-+..|-+.|+.. .|||.++...+.+..++.|++.+.... -.+..+||.
T Consensus 20 p~eiveLa~~~~A~iEVNL--FyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L 75 (178)
T PF02006_consen 20 PEEIVELAKATGAKIEVNL--FYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGL 75 (178)
T ss_pred hHHHHHHHHHhCCCEEEEc--ccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCC
Confidence 3566777778888776654 799999999999999999998666552 234577774
No 153
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=73.71 E-value=26 Score=29.10 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=53.4
Q ss_pred eEEEEecc-CCCHHHHHHHHHHHH-HhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMES-DLDLPVMNDAARTLS-DFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS-~SDl~~~~ka~~~L~-~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.|.|--|. .|+..-.-.++..|+ ++|++.-.+++.-.++..++.+++..+...|++=|.|..|-..
T Consensus 32 fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 32 FIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred EEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 57776666 566666555666665 7899999999999999999999998889999998888888653
No 154
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=73.61 E-value=24 Score=27.91 Aligned_cols=90 Identities=9% Similarity=0.069 Sum_probs=55.2
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHH
Q 032873 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (131)
Q Consensus 27 ~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl---~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~ 103 (131)
++.+++....++++......... .........|++++.+.++. ...+.+.+.+++.| |.+.+...+..++...
T Consensus 30 ~~tr~rV~~~a~~lgY~pn~~a~--~l~~~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g--~~~~i~~~~~~~~~~~ 105 (329)
T TIGR01481 30 PATRKKVLEVIKRLDYRPNAVAR--GLASKRTTTVGVIIPDISNIYYAELARGIEDIATMYK--YNIILSNSDEDPEKEV 105 (329)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHH--HHhhCCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHH
Confidence 45666666677777664111000 00112335799999765552 22344556667776 5677777788888888
Q ss_pred HHHHHHhhCCCeEEEEe
Q 032873 104 SYALSAKERGIKIIIVG 120 (131)
Q Consensus 104 ~~~~~~~~~g~~ViIA~ 120 (131)
++++...+++++-+|..
T Consensus 106 ~~~~~l~~~~vdGiIi~ 122 (329)
T TIGR01481 106 QVLNTLLSKQVDGIIFM 122 (329)
T ss_pred HHHHHHHhCCCCEEEEe
Confidence 88877777778777654
No 155
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.55 E-value=16 Score=30.96 Aligned_cols=52 Identities=6% Similarity=0.081 Sum_probs=43.0
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~SDl~-~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
.++.|..|.+.+-. .++...+.|+++||.+++.-.++.-+.+++.+.++...
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN 86 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELN 86 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHc
Confidence 47888888776544 45556889999999999999999999999999997664
No 156
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.40 E-value=9.1 Score=32.27 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=43.4
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
.++.|+.|.+.+ ....+...+.|+++||.+++.-.+..-+.+++.+.++...
T Consensus 28 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 80 (279)
T PRK14178 28 RLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLN 80 (279)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888887655 4566667889999999999999999999999999997663
No 157
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.38 E-value=16 Score=30.88 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=43.6
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+ .-..+...+.|+++||.+++.-.++.-+.+++.+.++...+
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 87 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNA 87 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 477888887655 44566688899999999999999999999999999976643
No 158
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=73.27 E-value=13 Score=32.52 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=56.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
..+.|+.|...---..++..+.|+..|+ ...-+..-+-+-+++.+..+.+...+.+++|++-|+..
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~ 96 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKT 96 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHH
Confidence 3688999999988888999999999998 55666668888999999998887678999999999853
No 159
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=73.14 E-value=7.9 Score=34.72 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=45.5
Q ss_pred eEEEEec-cCCCHHHHHHHHHHHHHhCCCeeEEE-EcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCc
Q 032873 60 IVGIIME-SDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (131)
Q Consensus 60 ~V~IimG-S~SDl~~~~ka~~~L~~fGI~~ev~V-~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAh 126 (131)
++.+++- .-+-++-.+.+.+.|++-||+|++.= +-.--|-.-+.+-++.++++.++.|||+-|+|+|
T Consensus 72 k~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~ 140 (465)
T KOG3857|consen 72 KTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAH 140 (465)
T ss_pred ceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchh
Confidence 4555542 23456678899999999999998531 1122333344444555667789999999999987
No 160
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=73.11 E-value=21 Score=27.88 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=52.4
Q ss_pred HHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHH
Q 032873 28 SATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (131)
Q Consensus 28 ~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~ 104 (131)
+-+++...+++++......... .....+...|+++.-+.++ ....+.+.+.++++|+ ++.+......++.-.+
T Consensus 7 ~Tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~ 82 (309)
T PRK11041 7 ATRQRVEQAVLEVGYSPQSLGR--NLKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEHGY--LVLIGDCAHQNQQEKT 82 (309)
T ss_pred HHHHHHHHHHHHHCCCcCHHHH--HhhcCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHH
Confidence 4455566666666554111111 1112234579988765433 3455678888899985 4445545556766677
Q ss_pred HHHHHhhCCCeEEEEe
Q 032873 105 YALSAKERGIKIIIVG 120 (131)
Q Consensus 105 ~~~~~~~~g~~ViIA~ 120 (131)
+++....++++-+|..
T Consensus 83 ~i~~l~~~~vDgiIi~ 98 (309)
T PRK11041 83 FVNLIITKQIDGMLLL 98 (309)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 7777777778766654
No 161
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.89 E-value=5 Score=33.82 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+|+..|.....+.++.+. .+++|+++|.+.-+.
T Consensus 183 AtVt~chs~T~~l~~~~~~-----ADIvIsAvGkp~~i~ 216 (278)
T PRK14172 183 ATVTICHSKTKNLKEVCKK-----ADILVVAIGRPKFID 216 (278)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccC
Confidence 5788889777777777653 699999999987543
No 162
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=72.77 E-value=24 Score=28.88 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=44.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE--cCCC-ChHHHHHHHHHHhhCCCeEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL--PPHQ-NCKEALSYALSAKERGIKII 117 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~--SAHR-tp~~~~~~~~~~~~~g~~Vi 117 (131)
.+.-|.-..||++.++++.+..++.|..+.+.+. .+.| +|+.+.++++.+.+.|++.|
T Consensus 106 ~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 166 (275)
T cd07937 106 DIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSI 166 (275)
T ss_pred CEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3444556779999999999999999987776563 3455 47888889998888888754
No 163
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.73 E-value=15 Score=31.13 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=44.4
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.| .-..+...+.|+++||.+++.-.+.--+.+++.+.++...+
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNN 86 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899997754 55667778899999999999999999999999999976643
No 164
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=72.48 E-value=34 Score=26.08 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 76 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 76 ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
.+.+.+++.|+...+........++.-.+.++....++++.+|.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi 63 (275)
T cd06320 20 GYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLF 63 (275)
T ss_pred HHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 34444455554333222222344544445554444445554443
No 165
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=72.27 E-value=17 Score=29.70 Aligned_cols=52 Identities=8% Similarity=0.001 Sum_probs=44.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEE
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~Vi 117 (131)
=..++++.+.++.+..++.|....+.+..++|. |+.+.++++.+.+-|++.|
T Consensus 103 ~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i 155 (266)
T cd07944 103 FHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVF 155 (266)
T ss_pred cccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEE
Confidence 356899999999999999999988888888887 5888889988888788654
No 166
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.26 E-value=17 Score=30.71 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=44.1
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SDl~-~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+-. .++.-.+.|+++||.+++.-.++.-+.+++.+.++...+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNK 87 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888877655 566668899999999999999999999999999976643
No 167
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=72.17 E-value=4.9 Score=34.22 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCee-------------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~e-------------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+...+.++|+.+||+++ .+|++.|.....+.++++. .+++|+++|.+.-+
T Consensus 150 Tp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~-----ADIvv~AvGk~~~i 224 (299)
T PLN02516 150 TPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVRE-----ADIVIAAAGQAMMI 224 (299)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcc
Confidence 45567777777777643 5788889888778777753 69999999996543
No 168
>PRK09492 treR trehalose repressor; Provisional
Probab=72.11 E-value=29 Score=27.25 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=55.5
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHH
Q 032873 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (131)
Q Consensus 27 ~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~ 103 (131)
++.+++....++++......... .........|++|....++ ...++.+.+.|++.|. ++-+.+....++...
T Consensus 33 ~~tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy--~~~~~~~~~~~~~~~ 108 (315)
T PRK09492 33 EETRERVEAVINQHGFSPSKSAR--AMRGQSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGY--DPIIMESQFSPEKVN 108 (315)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHH--HhhcCCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCC--eEEEEecCCChHHHH
Confidence 34555666666666543110000 0001233579999864333 4567777888888884 566667777888888
Q ss_pred HHHHHHhhCCCeEEEEe
Q 032873 104 SYALSAKERGIKIIIVG 120 (131)
Q Consensus 104 ~~~~~~~~~g~~ViIA~ 120 (131)
++++....++++-+|..
T Consensus 109 ~~~~~l~~~~vdgiIi~ 125 (315)
T PRK09492 109 EHLGVLKRRNVDGVILF 125 (315)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 88877777778766654
No 169
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=71.81 E-value=26 Score=28.21 Aligned_cols=91 Identities=7% Similarity=-0.038 Sum_probs=55.9
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHH
Q 032873 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103 (131)
Q Consensus 27 ~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~ 103 (131)
++.+++....++++......... .........|++++...++ ....+.+.+.++++| |.+.+...+..+++..
T Consensus 30 ~~tr~kV~~~a~elgY~pn~~a~--~l~~~~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~g--y~~~~~~~~~~~~~~~ 105 (346)
T PRK10401 30 ADTREAVMKAVSELGYRPNANAQ--ALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQ--KYVLIGNSYHEAEKER 105 (346)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHH--HhhcCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCC--CEEEEEcCCCChHHHH
Confidence 45666666666666553110000 0012233579999865443 234556667778887 4566777777888888
Q ss_pred HHHHHHhhCCCeEEEEec
Q 032873 104 SYALSAKERGIKIIIVGD 121 (131)
Q Consensus 104 ~~~~~~~~~g~~ViIA~A 121 (131)
++++...+++++-||...
T Consensus 106 ~~i~~l~~~~vdGiIi~~ 123 (346)
T PRK10401 106 HAIEVLIRQRCNALIVHS 123 (346)
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 888877777888777654
No 170
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=71.63 E-value=12 Score=31.54 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=43.9
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEE---cCCCChHHHHHHHHHHhhCC--CeEEEEecCcCC
Q 032873 60 IVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERG--IKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~V~---SAHRtp~~~~~~~~~~~~~g--~~ViIA~AG~aA 125 (131)
+|.|+.|... ++...++..+.|+.. ++.+. -.+-+.+.+.+.++.+...+ +++|||+-|+|.
T Consensus 25 r~lvVtd~~~~~~g~~~~v~~~L~~~----~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSv 92 (355)
T TIGR03405 25 RVVVVTFPEARALGLARRLEALLGGR----LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSV 92 (355)
T ss_pred eEEEEECcchhhcchHHHHHHHhccC----cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccH
Confidence 6888887643 245667777777643 23333 36777788888887776666 999999999985
No 171
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=71.60 E-value=41 Score=25.52 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=36.3
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|++|..+.+| ....+.+.+.++++|+.+. +.+....++.-.++++.+..++++.||..+
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgii~~~ 63 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHLI--ITAGHHSAEKEREAIEFLLERRCDALILHS 63 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEEE--EEeCCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 4555544333 2445566667777876544 444455666667777777777787777654
No 172
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.56 E-value=40 Score=25.27 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=36.8
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|+++....+| ....+.+.+.++++|. .+.+.+....+++..++++...+++++.+|..+.
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGY--TVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCC--eEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5566643222 2233455566777875 4455555567777777777777777877766654
No 173
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=71.52 E-value=30 Score=29.44 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=42.1
Q ss_pred CCeEEEEe-ccCC------CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 58 APIVGIIM-ESDL------DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 58 ~~~V~Iim-GS~S------Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.++|+||. |+.- |.. ..-....|+++|+.......-.| .++.+.+.++.+.++|++++|.-.|.+.
T Consensus 159 ~~rv~II~TG~Ev~~G~i~D~~-~~~l~~~L~~~G~~v~~~~iv~D-d~~~I~~ai~~~~~~g~DlIItTGGtsv 231 (312)
T cd03522 159 PLRVGLIVTGSEVYGGRIEDKF-GPVLRARLAALGVELVEQVIVPH-DEAAIAAAIAEALEAGAELLILTGGASV 231 (312)
T ss_pred CCEEEEEEcCCcCCCCcEEEhH-HHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhcCCCCEEEEeCCccc
Confidence 46899986 6521 221 22344568899987655444333 4566666666666667999999988764
No 174
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.43 E-value=6.8 Score=33.35 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=43.4
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+ .-.++...+.|+++||.+++.-.+..-+.+++.+.++...+
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 35 ALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 478888887654 44666777899999999999999999999999999977643
No 175
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.38 E-value=20 Score=30.41 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=44.5
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~-SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+ ++.-.++...+.|+++||.+++...+..-+.+++.+.++...+
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNK 93 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4778888865 4566777888999999999999999999999999999976643
No 176
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.22 E-value=18 Score=30.67 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=43.8
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~-SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+ ++.-+.+...+.|+++||.+++.-.++.-+.+++.+.++...+
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (285)
T PRK14191 33 KLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNT 86 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677777865 4566677788899999999999999999999999999977643
No 177
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=70.97 E-value=7.8 Score=31.91 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=43.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEE-EcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V-~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
.++.|++|...--...++..+.|+..|+++.+-. ....=+-+...++.+.+...+++++|++-|+.
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~ 86 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGT 86 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcH
Confidence 3799999998877778899999999999877322 11222444555666666667889999998874
No 178
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=70.90 E-value=21 Score=29.21 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=21.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQ 97 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~-fGI~~ev~V~SAHR 97 (131)
+|++++|+-.|+-.+....+.|++ -++++.+-+++-|.
T Consensus 2 ~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~ 40 (365)
T TIGR00236 2 KVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR 40 (365)
T ss_pred eEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH
Confidence 455666666666666666665554 35555555555554
No 179
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=70.54 E-value=25 Score=26.15 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=36.4
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
+.||.-|....++....|+.+|++..+=--.+..+..-++++.+.+.+-++-||+.-
T Consensus 3 FIvhg~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~T 59 (125)
T PF10137_consen 3 FIVHGRDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFT 59 (125)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEc
Confidence 344448889999999999999987664444444443344445455555556666643
No 180
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=70.44 E-value=35 Score=26.89 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=32.8
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcC--CCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPP--HQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SA--HRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
+++++-+.+| ....+.+.+.+++.|.. +.+.+. ...+++..++++.+.+++++-||..+
T Consensus 2 igvvvp~~~n~f~~~~~~gi~~~a~~~g~~--v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~ 65 (295)
T TIGR02955 2 LCALYPHLKDSYWLSINYGMVEQAKHLGVE--LKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGT 65 (295)
T ss_pred eeEEecCCCcHHHHHHHHHHHHHHHHhCCE--EEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 5556655444 22334455566666653 344433 23566666777777677777666543
No 181
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.30 E-value=37 Score=25.77 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=26.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEc--CCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~S--AHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
|+||...-+| ....+.+.+.+++.|. .+.+.. ....+++..++++.....+++-+|.
T Consensus 2 Igvi~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii 63 (273)
T cd06310 2 IALVPKGTTSDFWQAVKAGAEAAAKELGV--KVTFQGPASETDVAGQVNLLENAIARGPDAILL 63 (273)
T ss_pred eEEEecCCCcHHHHHHHHHHHHHHHHcCC--EEEEecCccCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 5555543332 1223334444555553 333332 2345665555555544445554444
No 182
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=70.15 E-value=20 Score=27.28 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~ 106 (131)
...|.+.++..+|+.+||+|+.+=+|-| ++...++.
T Consensus 14 ~t~~~C~~ak~iL~~~~V~~~e~DVs~~--~~~~~EL~ 49 (147)
T cd03031 14 KTFEDCNNVRAILESFRVKFDERDVSMD--SGFREELR 49 (147)
T ss_pred CcChhHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHH
Confidence 3889999999999999999998888876 34344433
No 183
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.99 E-value=6.3 Score=33.29 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCee-------------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~e-------------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+...+.++|+.+||+++ .+|+..|.....+.++.+. ++++|+++|.+.-+
T Consensus 140 Tp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~-----ADIvI~AvGk~~~i 214 (282)
T PRK14182 140 TPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGR-----ADILVAAIGKAELV 214 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCcc
Confidence 56677778888887652 5778889888778777653 69999999986544
No 184
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.97 E-value=49 Score=25.73 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=36.1
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 60 ~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.|++++.+-++ ..+.+.+.+.++++| |.+.+......+++..++++.+..++++.||-..
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~ 64 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIG--WNLRILDGRGSEAGQAAALNQAIALKPDGIVLGG 64 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcC--cEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 46666655444 234445556666666 4555555556677767777777666676666543
No 185
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.88 E-value=21 Score=30.15 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=43.2
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SDl-~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+- -+++...+.|+++||.+++.-.+..-+.+++.+.++...+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQ 87 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788888877654 4455567899999999999999999999999999976643
No 186
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=69.81 E-value=16 Score=23.18 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=37.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCC--eeEEEEcCCCChHHHHHHHHHH-hh-CCCeEEEE
Q 032873 67 SDLDLPVMNDAARTLSDFGVP--YEIKILPPHQNCKEALSYALSA-KE-RGIKIIIV 119 (131)
Q Consensus 67 S~SDl~~~~ka~~~L~~fGI~--~ev~V~SAHRtp~~~~~~~~~~-~~-~g~~ViIA 119 (131)
+.+.=|.|+++...|++++++ |++.-+........+.+++... .. .-..+||.
T Consensus 5 ~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~ 61 (84)
T TIGR02180 5 SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFIN 61 (84)
T ss_pred ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEEC
Confidence 356778999999999999999 8777777777777776665332 22 22366653
No 187
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=69.80 E-value=25 Score=24.42 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=36.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHH-h-hCCCeEEEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA-K-ERGIKIIIV 119 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~-~-~~g~~ViIA 119 (131)
.|.|.+ .+.=|.|.++.+.|+++||+|+..-+..+-.-.+..+.+... . ..=+.|||.
T Consensus 9 ~Vvvys--k~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~ 68 (99)
T TIGR02189 9 AVVIFS--RSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG 68 (99)
T ss_pred CEEEEE--CCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC
Confidence 355543 477899999999999999999877776543333333333221 1 222466664
No 188
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=69.80 E-value=32 Score=29.77 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=59.2
Q ss_pred hHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC----ChHH
Q 032873 26 NGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ----NCKE 101 (131)
Q Consensus 26 l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHR----tp~~ 101 (131)
..++...|+.+.+.|..-.-+.+.+-.+.|.-+.+|+||++.++. ..+....++++-.=.+++.+..+-= .|..
T Consensus 103 ~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gA--a~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~ 180 (438)
T PRK00286 103 IGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGA--AIRDILTVLRRRFPLVEVIIYPTLVQGEGAAAS 180 (438)
T ss_pred ccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccH--HHHHHHHHHHhcCCCCeEEEecCcCcCccHHHH
Confidence 457777777776666443224333212334445689999998875 4667777776543225666665543 4566
Q ss_pred HHHHHHHHhhCCCeEEEEecCc
Q 032873 102 ALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 102 ~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
+.+-++.+...+++|||-+=|+
T Consensus 181 i~~al~~~~~~~~Dviii~RGG 202 (438)
T PRK00286 181 IVAAIERANARGEDVLIVARGG 202 (438)
T ss_pred HHHHHHHhcCCCCCEEEEecCC
Confidence 6665566666568888887765
No 189
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.79 E-value=6.6 Score=33.21 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+|+..|.....+.++.+. ++++|+++|.+.-+.
T Consensus 182 atVtichs~T~~l~~~~~~-----ADIvI~AvG~~~~i~ 215 (284)
T PRK14170 182 ATVTIAHSRTKDLPQVAKE-----ADILVVATGLAKFVK 215 (284)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccC
Confidence 5677778877778777753 599999999987554
No 190
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=69.21 E-value=49 Score=25.24 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=27.5
Q ss_pred EEEEeccCCCH---HHHHHHHHHHHHh-CCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 61 VGIIMESDLDL---PVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 61 V~IimGS~SDl---~~~~ka~~~L~~f-GI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|+++.++-+|. ...+.+.+.+++. |+ ++.+......++...++++.+-.++++.||..
T Consensus 2 ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~ 63 (270)
T cd06308 2 IGFSQCNLADPWRAAMNDEIQREASNYPDV--ELIIADAADDNSKQVADIENFIRQGVDLLIIS 63 (270)
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHhcCCc--EEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 45555554441 2233344444443 33 33344444555555555555555555555544
No 191
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.16 E-value=47 Score=25.08 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=39.3
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|+++.-+.+| ....+.+.+.++++| |.+.+...+-.+++..++++...+++++-+|....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSG--YSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5555543333 234455667777887 45556666778888888888787888877776643
No 192
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=69.04 E-value=41 Score=25.17 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=45.1
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCee---------------EEEEcCCCChHHHHHHHHHHhhCCCeEE
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYE---------------IKILPPHQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~e---------------v~V~SAHRtp~~~~~~~~~~~~~g~~Vi 117 (131)
..+.|..+-...++....-|..+|+++. +-++|.-+...++.+.++.++++|++++
T Consensus 36 I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI 106 (179)
T cd05005 36 IFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVV 106 (179)
T ss_pred EEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEE
Confidence 4566666668889999888888888653 5677888888999999999999998764
No 193
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.91 E-value=21 Score=30.39 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=43.4
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+ .-..+...+.|+++||.+++.-.+..-+.+++.+.++...+
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 35 GLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578888887655 44556668899999999999999999999999999976643
No 194
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=68.90 E-value=40 Score=25.50 Aligned_cols=61 Identities=26% Similarity=0.216 Sum_probs=42.3
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC-CCChHHHHHHHHHHhhCCCeEE
Q 032873 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP-HQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 57 ~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SA-HRtp~~~~~~~~~~~~~g~~Vi 117 (131)
..+.|.|+.|+-.-=.-.--++..|.+.|+.+++..... -+..+......+..++-|.+++
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 336899999999888888899999999999887755643 3444555555566666665554
No 195
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.85 E-value=47 Score=25.29 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.....+.+.+.++++|.. +.+......+++..+.++.....+++-+|...
T Consensus 14 ~~~~~~~i~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~ 63 (269)
T cd06281 14 LAQLFSGAEDRLRAAGYS--LLIANSLNDPERELEILRSFEQRRMDGIIIAP 63 (269)
T ss_pred HHHHHHHHHHHHHHcCCE--EEEEeCCCChHHHHHHHHHHHHcCCCEEEEec
Confidence 344455566666666643 34444455666666666666666666666544
No 196
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=68.80 E-value=12 Score=23.30 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHH
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEA 102 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~ 102 (131)
.-+.++++...|+..|++|+.+.+.....++++
T Consensus 8 ~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~ 40 (73)
T cd03059 8 DDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDL 40 (73)
T ss_pred CChhHHHHHHHHHHcCCccEEEEcCCCCCCHHH
Confidence 346789999999999999998877644333333
No 197
>PLN02204 diacylglycerol kinase
Probab=68.40 E-value=37 Score=31.76 Aligned_cols=90 Identities=7% Similarity=-0.054 Sum_probs=56.0
Q ss_pred eeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEE----eccCCCHHHHHHHHHHHHHhCCCeeEEEEc
Q 032873 19 IPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGII----MESDLDLPVMNDAARTLSDFGVPYEIKILP 94 (131)
Q Consensus 19 itVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~Ii----mGS~SDl~~~~ka~~~L~~fGI~~ev~V~S 94 (131)
.|+-.++.+.|+.=++.+.+.+..- ......+.|| .|..+.....+++..+|+..|+.+++.++-
T Consensus 131 ~~f~~~d~~~~~~w~~~l~~~l~~~-----------~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~ 199 (601)
T PLN02204 131 YTFGHKDLQTCQSWVDRLNASLNKE-----------VGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTE 199 (601)
T ss_pred EeecCCCHHHHHHHHHHHHHHHhhc-----------cCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEec
Confidence 3444566666765555554444321 1112244454 477777788889999999999999988875
Q ss_pred CCCChHHHHHHHHHH---hhCCCeEEEEecC
Q 032873 95 PHQNCKEALSYALSA---KERGIKIIIVGDG 122 (131)
Q Consensus 95 AHRtp~~~~~~~~~~---~~~g~~ViIA~AG 122 (131)
.- ....+++..+ +..+++.+||+-|
T Consensus 200 ~a---ghA~d~~~~~~~~~l~~~D~VVaVGG 227 (601)
T PLN02204 200 RA---GHAFDVMASISNKELKSYDGVIAVGG 227 (601)
T ss_pred Cc---chHHHHHHHHhhhhccCCCEEEEEcC
Confidence 33 3444444332 3567888888766
No 198
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=68.19 E-value=33 Score=24.02 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+++.+.|+..|++++..+.-- ..| ...+++++++.+++.||-++-+-..|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~g-~~~--~~~I~~~a~~~~~dlIV~Gs~g~~~l 117 (146)
T cd01989 68 LPYRCFCSRKGVQCEDVVLED-DDV--AKAIVEYVADHGITKLVMGASSDNHF 117 (146)
T ss_pred HHHHHHHhhcCCeEEEEEEeC-CcH--HHHHHHHHHHcCCCEEEEeccCCCce
Confidence 344445556788888777631 123 33455666677788888887655544
No 199
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.04 E-value=23 Score=29.95 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=43.7
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+ .-+++...+.|+++||.+++.-.+++-+-+++.+.++...+
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 33 GLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 478888887755 45566668899999999999999999999999999976643
No 200
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=68.01 E-value=25 Score=28.40 Aligned_cols=53 Identities=26% Similarity=0.192 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
....-+..++++.|++.-.+++.-.|+..++.+++..+...|++=+.++.|-.
T Consensus 45 ~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~ 97 (274)
T cd00537 45 MTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDP 97 (274)
T ss_pred hHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCC
Confidence 45566677778889999999999999999999999888899999788877743
No 201
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=67.87 E-value=17 Score=25.11 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEc-CCCChHHHHHHHHHH
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSA 109 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~S-AHRtp~~~~~~~~~~ 109 (131)
+.=+.|++|.+.|++.||+|+..=+. -.-+.+++.++....
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 44689999999999999999966554 455677777777543
No 202
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=67.82 E-value=40 Score=25.21 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=33.6
Q ss_pred eEEEEeccCCC----HHHHHHHHHHHH-HhCCCeeEEEEcCCC-------------ChHHHHHHHHHHhhCCCeEEEEe
Q 032873 60 IVGIIMESDLD----LPVMNDAARTLS-DFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 60 ~V~IimGS~SD----l~~~~ka~~~L~-~fGI~~ev~V~SAHR-------------tp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
+|.+|.||.+. ...++.+.+.+. +.|..++ ++.... .|+.+.++.+...+ .+.||-+
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~--~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--AD~iIi~ 75 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPR--TIDLADLAPSLGGALWRSQLPPDAERILQAIES--ADLLVVG 75 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEE--EEEhhhcChhhccccccCCCCHHHHHHHHHHHH--CCEEEEE
Confidence 58899999976 445666666654 4565433 333222 36777777766655 3444443
No 203
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.61 E-value=21 Score=30.22 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=43.4
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
.++.|+.|.+. +.-..+...+.|+++||.+++.-.++.-+.+++.+.++...
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN 87 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELN 87 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 47778888764 45566777889999999999999999999999999997664
No 204
>PRK08862 short chain dehydrogenase; Provisional
Probab=67.56 E-value=53 Score=25.39 Aligned_cols=52 Identities=6% Similarity=-0.086 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh--C-CCeEEEEecCc
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE--R-GIKIIIVGDGV 123 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~--~-g~~ViIA~AG~ 123 (131)
.+..++..+.++++|.......+ --..++.+.++++...+ . .++++|..||.
T Consensus 39 ~~~l~~~~~~i~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 39 QSALKDTYEQCSALTDNVYSFQL-KDFSQESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEc-cCCCHHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 34445555555555544322212 22457777777755433 2 47888888874
No 205
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.48 E-value=7.8 Score=32.72 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+|+..|+....+.++.+. ++++|+++|...-+.
T Consensus 182 atVt~chs~T~nl~~~~~~-----ADIvIsAvGkp~~i~ 215 (282)
T PRK14166 182 ATVSVCHIKTKDLSLYTRQ-----ADLIIVAAGCVNLLR 215 (282)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccC
Confidence 6777889888777777653 699999999876543
No 206
>PRK09526 lacI lac repressor; Reviewed
Probab=67.43 E-value=35 Score=27.18 Aligned_cols=90 Identities=6% Similarity=-0.020 Sum_probs=52.4
Q ss_pred HHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcC-CCChHHH
Q 032873 27 GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPP-HQNCKEA 102 (131)
Q Consensus 27 ~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SA-HRtp~~~ 102 (131)
++.+++...+++++......... .........|++++.+.++ ....+.+.+.++++|..+ .+... +-.+++.
T Consensus 34 ~~tr~rV~~~a~elgY~pn~~a~--~l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~--~i~~~~~~~~~~~ 109 (342)
T PRK09526 34 AKTREKVEAAMAELNYVPNRVAQ--QLAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSV--VISMVERSGVEAC 109 (342)
T ss_pred HHHHHHHHHHHHHHCCCcCHHHH--HhhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEE--EEEeCCCChHHHH
Confidence 45666666667777653110000 0012233579999986544 235566777788888654 44433 3345666
Q ss_pred HHHHHHHhhCCCeEEEEe
Q 032873 103 LSYALSAKERGIKIIIVG 120 (131)
Q Consensus 103 ~~~~~~~~~~g~~ViIA~ 120 (131)
.++++...+++++-+|..
T Consensus 110 ~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 110 QAAVNELLAQRVSGVIIN 127 (342)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 677777777788776654
No 207
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=67.42 E-value=11 Score=28.71 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=35.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
++|+++.= .+..+-+.... +-||++...... .+++++...++.+...|++|||.+..
T Consensus 78 ~~Iavv~~-~~~~~~~~~~~---~ll~~~i~~~~~---~~~~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 78 PKIAVVGY-PNIIPGLESIE---ELLGVDIKIYPY---DSEEEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp SEEEEEEE-SS-SCCHHHHH---HHHT-EEEEEEE---SSHHHHHHHHHHHHHTT--EEEESHH
T ss_pred CcEEEEec-ccccHHHHHHH---HHhCCceEEEEE---CCHHHHHHHHHHHHHcCCcEEECCHH
Confidence 57887643 34333344433 446775444444 47999999999999999999998753
No 208
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=67.42 E-value=28 Score=31.38 Aligned_cols=65 Identities=15% Similarity=0.048 Sum_probs=42.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC---CCChHHHHHHHHHHhhC---CCeEEEEecCcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKER---GIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SA---HRtp~~~~~~~~~~~~~---g~~ViIA~AG~aA 125 (131)
++.||..... ....++..+.|+..|+.+...|... +++.+...+..+...+. ..+++||+-|++.
T Consensus 211 k~~iV~d~~v-~~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv 281 (542)
T PRK14021 211 KVALIHTQPV-QRHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAA 281 (542)
T ss_pred eEEEEECccH-HHHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHH
Confidence 5666665544 3467888889999898755555543 24555555555444443 4899999999864
No 209
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=67.35 E-value=52 Score=24.86 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=39.7
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|++++-+.++ ....+.+.+.++++|.. +.+...-..+++..++++.+.+++++.+|...
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~--~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYKKGYK--LILCNSDNDPEKEREYLEMLRQNQVDGIIAGT 63 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHCCCe--EEEecCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 6677765443 34455667788888855 44454445677777888888888888777654
No 210
>PRK10426 alpha-glucosidase; Provisional
Probab=67.23 E-value=31 Score=31.96 Aligned_cols=86 Identities=14% Similarity=-0.015 Sum_probs=57.8
Q ss_pred eecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeE-EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc-----
Q 032873 21 VLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIV-GIIMESDLDLPVMNDAARTLSDFGVPYEIKILP----- 94 (131)
Q Consensus 21 Vt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V-~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~S----- 94 (131)
+.++++.++-++|..+...-..+ | . .-- +..+|-.+..+.+.+.++.+++.|||+++-.+-
T Consensus 182 ~~G~~~~~vi~~yt~ltGr~p~~---------P---~-Wal~G~~~g~~~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~ 248 (635)
T PRK10426 182 ECADTYISLLEKLTALFGRQPEL---------P---D-WAYDGVTLGIQGGTEVVQKKLDTMRNAGVKVNGIWAQDWSGI 248 (635)
T ss_pred EeCCCHHHHHHHHHHhhCCCCCC---------C---h-hhccCccccccCCHHHHHHHHHHHHHcCCCeeEEEEeccccc
Confidence 45678899999998876332211 1 1 123 566777766778889999999999999976553
Q ss_pred ----------------CCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 95 ----------------PHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 95 ----------------AHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
..|-|+ ..+++++..++|++++.-+
T Consensus 249 ~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i 289 (635)
T PRK10426 249 RMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYI 289 (635)
T ss_pred ccccccccccccceEChhhCCC-HHHHHHHHHHCCCEEEEEE
Confidence 112232 4567777778899877644
No 211
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=67.18 E-value=15 Score=23.21 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHH
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEA 102 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~ 102 (131)
.=+.+.++..+|++.|++|+..-+.....++++
T Consensus 8 ~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~ 40 (71)
T cd03060 8 RCPYAMRARMALLLAGITVELREVELKNKPAEM 40 (71)
T ss_pred CCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHH
Confidence 346789999999999999998766654334433
No 212
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.18 E-value=7.9 Score=32.78 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=25.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+|+..|+....+.++.+. .+++|+++|.+.-+.
T Consensus 180 aTVtichs~T~~l~~~~~~-----ADIvIsAvGkp~~i~ 213 (287)
T PRK14173 180 ATVTLAHSKTQDLPAVTRR-----ADVLVVAVGRPHLIT 213 (287)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccC
Confidence 4666678877777777653 699999999987553
No 213
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=67.05 E-value=28 Score=21.65 Aligned_cols=59 Identities=14% Similarity=-0.012 Sum_probs=40.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCee----------EEEE-cCCCChHHHHHHHHHHh-hCCCeEEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE----------IKIL-PPHQNCKEALSYALSAK-ERGIKIII 118 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~e----------v~V~-SAHRtp~~~~~~~~~~~-~~g~~ViI 118 (131)
.-.|.+||-++.+.+++...-|+..|.+.. .+|. ....+-++..+..+... ..|...||
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~~~v 74 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPDAFV 74 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS--EE
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCCCEE
Confidence 467889999999999999999999888631 2333 46677788888887776 66676665
No 214
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.97 E-value=34 Score=29.01 Aligned_cols=57 Identities=30% Similarity=0.388 Sum_probs=43.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCC-eEEEE
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI-KIIIV 119 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~-~ViIA 119 (131)
..|-||.-+.||.++..+|..-+ .+|-.|.++|.|.--|+. .++++.+.. |+ -|+||
T Consensus 7 VDVRIiVEGAsDvE~iSkalQr~-aLG~eYnITisSIiPTT~--~eIA~raae-GADlvlIA 64 (290)
T COG4026 7 VDVRIIVEGASDVEVISKALQRL-ALGSEYNITISSIIPTTN--VEIAKRAAE-GADLVLIA 64 (290)
T ss_pred ceEEEEeeccchHHHHHHHHHHh-hhcccceeEEEeeccCch--HHHHHHhhc-cCCEEEEe
Confidence 57999999999999999887764 589999999999865554 566655543 45 45555
No 215
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=66.85 E-value=52 Score=24.68 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=36.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|++|.-+.++ ....+.+.+.++++| |++.+......+++..++++....++++.+|...
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 63 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAG--YQLLLGNTGYSPEREEELLRTLLSRRPAGLILTG 63 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcC--CEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeC
Confidence 4555533222 334456667777777 4555566677777777777777677777666654
No 216
>PRK13761 hypothetical protein; Provisional
Probab=66.63 E-value=25 Score=29.58 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcCC
Q 032873 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGT 130 (131)
Q Consensus 74 ~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpGv 130 (131)
-+++.+.-+..|-+.|+.. .|||+++...+.+..++.|++.+... +-...+||.
T Consensus 83 p~eiveLa~~~~A~iEVNL--F~RT~eR~~~I~~~l~~~Ga~~vlG~-~~~~~ip~L 136 (248)
T PRK13761 83 PEEIVELAEALNAKLEVNL--FYRTEERVEKIAEVLREHGAKEVLGT-DEDARIPGL 136 (248)
T ss_pred hHHHHHHHHHhCCCEEEEe--ccCCHHHHHHHHHHHHHcCCceeeCC-CCcCcCCCC
Confidence 4566777788888766554 79999999999999999999855543 336777764
No 217
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=66.58 E-value=34 Score=27.94 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
.+.-+..+.+++|++.-.+++.-.|+...+.+++..+...|++=+.|..|-.
T Consensus 46 t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~ 97 (272)
T TIGR00676 46 TVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDP 97 (272)
T ss_pred HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3444444445899999999999999999999999999999999888887754
No 218
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=66.47 E-value=45 Score=26.44 Aligned_cols=89 Identities=9% Similarity=0.004 Sum_probs=55.2
Q ss_pred HHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHH
Q 032873 28 SATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (131)
Q Consensus 28 ~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~ 104 (131)
+-+++....++++......... .........|+++....++ ...++.+.+.+.+.| |.+-++..+..+++..+
T Consensus 31 ~tr~rV~~~a~~lgY~pn~~a~--~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~g--y~~~i~~~~~~~~~~~~ 106 (311)
T TIGR02405 31 ETRERVEQVIQQSGFVPSKSAR--AMRGGSDKVVAVIVSRLDSPSENLAVSGMLPVFYTAG--YDPIIMESQFSPQLTNE 106 (311)
T ss_pred HHHHHHHHHHHHHCCCcCHHHH--HhhcCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCC--CeEEEecCCCChHHHHH
Confidence 4455666666666543110000 0012233579999864333 345777788888887 45667777888998888
Q ss_pred HHHHHhhCCCeEEEEe
Q 032873 105 YALSAKERGIKIIIVG 120 (131)
Q Consensus 105 ~~~~~~~~g~~ViIA~ 120 (131)
+++....+.++-+|..
T Consensus 107 ~~~~l~~~~vdGvIi~ 122 (311)
T TIGR02405 107 HLSVLQKRNVDGVILF 122 (311)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 8877777777766654
No 219
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=66.34 E-value=31 Score=21.97 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=28.1
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~ 106 (131)
+.+..+- +.|.++.+.|++.||+|+.+=+. +.|+...++.
T Consensus 3 ly~~~~C-p~C~~ak~~L~~~~i~~~~~di~--~~~~~~~~~~ 42 (72)
T TIGR02194 3 VYSKNNC-VQCKMTKKALEEHGIAFEEINID--EQPEAIDYVK 42 (72)
T ss_pred EEeCCCC-HHHHHHHHHHHHCCCceEEEECC--CCHHHHHHHH
Confidence 4444444 89999999999999999865443 4555555544
No 220
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=66.27 E-value=32 Score=30.39 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=31.0
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHH
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~ 108 (131)
|.||+- .+...+.+++.++.=.|++..++||++.+++.+.+++
T Consensus 6 ILGsTG--SIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~ 48 (385)
T PRK05447 6 ILGSTG--SIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQARE 48 (385)
T ss_pred EEcCCh--HHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHH
Confidence 346543 4666677777777667888888888888888887754
No 221
>PHA03050 glutaredoxin; Provisional
Probab=66.22 E-value=31 Score=24.58 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=35.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCC---CeeEEEEcC-CCChHHHHHHHHHHhhCC-CeEEEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGV---PYEIKILPP-HQNCKEALSYALSAKERG-IKIIIV 119 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI---~~ev~V~SA-HRtp~~~~~~~~~~~~~g-~~ViIA 119 (131)
.|.|. |.|.=|.|.++.+.|+++|| +|++.=+.. +..++...++.+....+. +.|||-
T Consensus 14 ~V~vy--s~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~ 76 (108)
T PHA03050 14 KVTIF--VKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFG 76 (108)
T ss_pred CEEEE--ECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEEC
Confidence 45555 45668999999999999999 665544443 334443444443323333 366664
No 222
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.95 E-value=8.4 Score=32.53 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+|+..|.....+.++.+. .+++|+++|...-+.
T Consensus 181 atVtichs~T~~l~~~~~~-----ADIvI~AvG~p~~i~ 214 (282)
T PRK14169 181 ATVTIAHSKTRNLKQLTKE-----ADILVVAVGVPHFIG 214 (282)
T ss_pred CEEEEECCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 5677778766667777653 699999999876543
No 223
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=65.92 E-value=24 Score=28.95 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc-------CCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~S-------AHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+.+..+++.+.|+++|....+.=.. |..--+|..++.+...+..++.|++.-|+-.
T Consensus 12 ~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g 74 (282)
T cd07025 12 EEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYG 74 (282)
T ss_pred cHHHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCC
Confidence 3389999999999998865433221 1222356666767777888999999999854
No 224
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=65.58 E-value=33 Score=23.37 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=42.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
..+.++....-|=+. ++.+++.||+. -+|-.|-+....-+.++++..+ +|..+.|+.-|
T Consensus 10 ~~~~~lvS~s~DGe~---ia~~~~~~G~~-~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALVSRSRDGEL---IARVLERFGFR-TIRGSSSRGGARALREMLRALK-EGYSIAITPDG 68 (74)
T ss_pred CCEEEEEccCcCHHH---HHHHHHHcCCC-eEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCCC
Confidence 356666666677655 45677899986 5676666666777778887776 78899998876
No 225
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=65.53 E-value=46 Score=26.56 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=37.6
Q ss_pred EEeccCCCHHHHH---HH-HHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 63 IIMESDLDLPVMN---DA-ARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 63 IimGS~SDl~~~~---ka-~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
++-|+..|...-+ ++ .+.-+++|+++++.-.. ..++...+-++...++|+++||+..
T Consensus 5 l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~--~~~~~~~~~i~~~~~~g~dlIi~~g 65 (258)
T cd06353 5 VYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV--PEGADAERVLRELAAQGYDLIFGTS 65 (258)
T ss_pred EEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC--CchHhHHHHHHHHHHcCCCEEEECc
Confidence 4457777844333 33 33335688876665432 2688888888888888999999843
No 226
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=65.50 E-value=13 Score=29.36 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChH-------HHHHHHHHHhhCCCeEEEE
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCK-------EALSYALSAKERGIKIIIV 119 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~-------~~~~~~~~~~~~g~~ViIA 119 (131)
|.+.+++..+.|++ .+++-|++.|-.-+ +..++++...+.|+++||+
T Consensus 158 ~~~~i~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG 211 (239)
T smart00854 158 DREKILADIARARK---KADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIG 211 (239)
T ss_pred CHHHHHHHHHHHhc---cCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEc
Confidence 46666666666665 47999999997643 3466777776689999993
No 227
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.49 E-value=57 Score=24.66 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
+.+.+.|++.|+ ++.+......+++-.++++.+.+++++.+|.
T Consensus 19 ~~i~~~~~~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii 61 (267)
T cd06322 19 NAMKEEAKKQKV--NLIVSIANQDLNKQLSDVEDFITKKVDAIVL 61 (267)
T ss_pred HHHHHHHHhcCC--EEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 444444555553 3333333345555555555554555555544
No 228
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=65.48 E-value=17 Score=24.75 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=38.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 116 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~V 116 (131)
..++|+=-+-.......+..+|+++|++..+.|++-. .++-.+.++...+.|..|
T Consensus 6 ~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G~ei 60 (123)
T PF01522_consen 6 KSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAGHEI 60 (123)
T ss_dssp SEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT-EE
T ss_pred CEEEEEEecCchhhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHHHHH
Confidence 4555555555578889999999999999999999875 555566777777787443
No 229
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.47 E-value=30 Score=29.40 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=43.0
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+.+ .-+++...+.|+++||.+++.-.+..-+.+++.+.++...+
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~ 87 (294)
T PRK14187 34 CLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNN 87 (294)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 478888887654 45566668899999999999999999999999998876643
No 230
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=65.44 E-value=24 Score=29.83 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=37.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCCCChH
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCK 100 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~-fGI~~ev~V~SAHRtp~ 100 (131)
+|++++|+-.|+-.|......|++ -++++.+-++.-|+.++
T Consensus 2 ki~~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~ 43 (365)
T TIGR03568 2 KICVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPE 43 (365)
T ss_pred eEEEEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChh
Confidence 699999999999999999999987 57899999999999776
No 231
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.29 E-value=48 Score=27.65 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=43.1
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhC
Q 032873 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (131)
Q Consensus 59 ~~V~IimGS~SDl~-~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~ 112 (131)
.++.|+.|.+.+-. ..+--.+.|+++||++++.-.+++-+++++.++++...+.
T Consensus 35 ~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 35 ILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47888888775544 4445566779999999999999999999999999877554
No 232
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=64.98 E-value=63 Score=25.03 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCC--ChHHHHHHHHHHhhCCCeEEEEec
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQ--NCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHR--tp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
+.+.+.|+++|..+.+....... .++...++++...+++++.||...
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~ 68 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTL 68 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34456667777655554433332 556666777777677787777654
No 233
>PRK10824 glutaredoxin-4; Provisional
Probab=64.80 E-value=48 Score=24.26 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=36.4
Q ss_pred eEEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh--CCCeEEEEe
Q 032873 60 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE--RGIKIIIVG 120 (131)
Q Consensus 60 ~V~IimGS~---SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~--~g~~ViIA~ 120 (131)
.|.|+|=|+ +==|.|.+|.++|+++|++|...-+- ..++ +.++++...+ -=..|||-+
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~--~d~~-~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDIL--QNPD-IRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEec--CCHH-HHHHHHHHhCCCCCCeEEECC
Confidence 477776654 34578999999999999998754443 2454 4444433322 223777743
No 234
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.76 E-value=58 Score=25.77 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhC--CCeEEEE
Q 032873 77 AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIV 119 (131)
Q Consensus 77 a~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~--g~~ViIA 119 (131)
+.+.++++|+ ++.+.+....+++..++++...++ +++-||.
T Consensus 22 i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi 64 (305)
T cd06324 22 MQAAADDLGI--ELEVLYAERDRFLMLQQARTILQRPDKPDALIF 64 (305)
T ss_pred HHHHHHhcCC--eEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 3344444443 233334444555555555444444 4544443
No 235
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=64.76 E-value=31 Score=29.44 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=43.4
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~SDl-~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|..|.+.+- -..+...+.|+++||.++..-.+..-+.+++.+.+++..+
T Consensus 41 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 94 (299)
T PLN02516 41 GLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNA 94 (299)
T ss_pred eEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788888877554 4556677889999999999999999999999999977643
No 236
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=64.28 E-value=37 Score=22.09 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=28.2
Q ss_pred hCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcC
Q 032873 84 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (131)
Q Consensus 84 fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpG 129 (131)
.|+++...+... .+ ...+.+++++.+++++|.++.....+++
T Consensus 68 ~~~~~~~~~~~~--~~--~~~i~~~~~~~~~dlvvig~~~~~~~~~ 109 (130)
T cd00293 68 AGVKVETVVLEG--DP--AEAILEAAEELGADLIVMGSRGRSGLRR 109 (130)
T ss_pred CCCceEEEEecC--CC--HHHHHHHHHHcCCCEEEEcCCCCCccce
Confidence 577777666542 23 4555566667889999998877766543
No 237
>PLN02540 methylenetetrahydrofolate reductase
Probab=64.16 E-value=29 Score=32.13 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=48.9
Q ss_pred eEEEEeccC-CCHHHHHHHHHHH-HHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 60 IVGIIMESD-LDLPVMNDAARTL-SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 60 ~V~IimGS~-SDl~~~~ka~~~L-~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
.|.|--|.. |....--+++..| +++|++.-+++++-.++.+.+.+.+..+...|++=|.|..|-.
T Consensus 31 FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDp 97 (565)
T PLN02540 31 FCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDP 97 (565)
T ss_pred EEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 455554433 2333333444444 4579999999999999999999999999999999999988854
No 238
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=64.12 E-value=34 Score=21.66 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH
Q 032873 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (131)
Q Consensus 68 ~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~ 106 (131)
..+=|.|+++.+.|++++++|+..-+..+....++.+.+
T Consensus 7 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~ 45 (82)
T cd03419 7 KSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYL 45 (82)
T ss_pred cCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHH
Confidence 467799999999999999999877777777665555554
No 239
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.66 E-value=11 Score=31.83 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+|+..|...+.+.++.+. .+++|+++|...-++
T Consensus 182 AtVti~hs~T~~l~~~~~~-----ADIvV~AvGkp~~i~ 215 (281)
T PRK14183 182 ATVDICHIFTKDLKAHTKK-----ADIVIVGVGKPNLIT 215 (281)
T ss_pred CEEEEeCCCCcCHHHHHhh-----CCEEEEecCcccccC
Confidence 4566678777777776653 699999999887654
No 240
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=63.65 E-value=20 Score=25.38 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCC-ChHHHHHHHHH
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALS 108 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHR-tp~~~~~~~~~ 108 (131)
=+.|++|.+.|++.||+|+.+=+.... +.+++.++.+.
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 9 CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 478999999999999999987766544 45666666653
No 241
>PRK13057 putative lipid kinase; Reviewed
Probab=63.65 E-value=33 Score=27.76 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
...+++.+.|++.|+.+++..+ +.+....++++.. .++++++|++-|
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~iiv~GG 59 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVIVGGG 59 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEEEECc
Confidence 3567888999999998776644 5667777777653 456787776544
No 242
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.47 E-value=10 Score=32.13 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=25.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+|+..|.....+.++.+. .+++|+++|.+.-+.
T Consensus 184 ATVtichs~T~~L~~~~~~-----ADIvV~AvGkp~~i~ 217 (288)
T PRK14171 184 CSVTICHSKTHNLSSITSK-----ADIVVAAIGSPLKLT 217 (288)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCCCccC
Confidence 5777889666667777653 699999999876543
No 243
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=63.43 E-value=28 Score=27.06 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=45.6
Q ss_pred eEEEEeccCCC--------------HHHHHHHHHHHHHhCCCeeEEEEc-CCCChHHHHHHHHHHhhCCCeEE
Q 032873 60 IVGIIMESDLD--------------LPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 60 ~V~IimGS~SD--------------l~~~~ka~~~L~~fGI~~ev~V~S-AHRtp~~~~~~~~~~~~~g~~Vi 117 (131)
.+.-+.-+.|| ++.+.++.+.++++|....+.... ..-+|+++.++++.+.+-|++.|
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 154 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII 154 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE
Confidence 45566677899 889999999999999988777755 44568889999988887788765
No 244
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=63.43 E-value=61 Score=26.04 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=22.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCC-eeEEEEcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH 96 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~-~ev~V~SAH 96 (131)
|.++.|+|+ |.+...++++.+.+.|+. +|+.+.|.|
T Consensus 100 pvi~si~g~--~~~~~~~~a~~~~~~G~d~ielN~~cP~ 136 (289)
T cd02810 100 PLIASVGGS--SKEDYVELARKIERAGAKALELNLSCPN 136 (289)
T ss_pred eEEEEeccC--CHHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 566667776 445566666666666665 556655554
No 245
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=63.41 E-value=21 Score=28.91 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=21.3
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEE
Q 032873 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKIL 93 (131)
Q Consensus 59 ~~V~IimGS~SDl-~~~~ka~~~L~~fGI~~ev~V~ 93 (131)
+.|.|.+|+ ||. ....++.+.|.++.-++.+.|+
T Consensus 171 ~~iLi~~GG-~d~~~~~~~~l~~l~~~~~~~~i~vv 205 (279)
T TIGR03590 171 RRVLVSFGG-ADPDNLTLKLLSALAESQINISITLV 205 (279)
T ss_pred CeEEEEeCC-cCCcCHHHHHHHHHhccccCceEEEE
Confidence 468777774 555 3456778888776555454443
No 246
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=63.26 E-value=35 Score=28.54 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
..+-+..++++.|++.-.+++.-.++..++.+.+..+.+.|++=+.|..|-
T Consensus 70 ~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 70 THSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 333455555889999999999999999999999988999999999999886
No 247
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=62.86 E-value=53 Score=29.94 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=53.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEE----EcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKI----LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V----~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
..|.-|.-+-||+..++.+.+..++.|...+..| ...| +++.+.++++.+.+-|++ .|+++-+++.|
T Consensus 111 idi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~-t~e~~~~~a~~l~~~Gad-~I~IkDtaGll 181 (499)
T PRK12330 111 MDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH-TVEGFVEQAKRLLDMGAD-SICIKDMAALL 181 (499)
T ss_pred CCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC-CHHHHHHHHHHHHHcCCC-EEEeCCCccCC
Confidence 3566677788999999999999999999775554 3344 899999999999998987 56776666544
No 248
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=62.70 E-value=61 Score=24.05 Aligned_cols=59 Identities=17% Similarity=0.330 Sum_probs=33.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|++|.-..++ ....+.+.+.+++.|+ ++.+......|+...++++....++++.+|...
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~ 63 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISP 63 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhcCc--eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5566633222 2344445555666664 444455555777777777666666677666654
No 249
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=62.63 E-value=40 Score=29.28 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=44.7
Q ss_pred CeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEE--E--Ec---CCCC-hHHHHHHHHHHhhCCCe---EEEEecCcC
Q 032873 59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIK--I--LP---PHQN-CKEALSYALSAKERGIK---IIIVGDGVE 124 (131)
Q Consensus 59 ~~V~IimGS~SDl---~~~~ka~~~L~~fGI~~ev~--V--~S---AHRt-p~~~~~~~~~~~~~g~~---ViIA~AG~a 124 (131)
.++.||+.+.-.- +..++..+.|+.-|+++++. + .. .+++ ++.+.+..+.+.+.|++ ++||+-|++
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 3688888765543 44577777887778766522 2 22 3455 35666777777777776 999999986
Q ss_pred C
Q 032873 125 A 125 (131)
Q Consensus 125 A 125 (131)
.
T Consensus 111 v 111 (369)
T cd08198 111 V 111 (369)
T ss_pred H
Confidence 4
No 250
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=62.60 E-value=13 Score=23.17 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHH
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~ 107 (131)
+.+.++...|+..|++|+...+..........+|.+
T Consensus 10 ~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~ 45 (74)
T cd03045 10 PPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLK 45 (74)
T ss_pred CcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHh
Confidence 567889999999999999988765443333344443
No 251
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=62.55 E-value=71 Score=26.18 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=45.7
Q ss_pred CCCeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 57 ~~~~V~IimGS~SDl---~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
+...|++++....+- .+.+-+.+.++++| |++.+.+....++...++++...+++++.||..+.
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g--~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLG--AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 446899999654332 23344456667777 56777888888998989998888888988877643
No 252
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.54 E-value=27 Score=29.58 Aligned_cols=52 Identities=10% Similarity=0.137 Sum_probs=43.1
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
.++.|..|.+.+ .-+.+...+.|+++||.+++.-.++.-+-+++.+.++...
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (284)
T PRK14170 33 GLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELN 85 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888887654 5566677889999999999999999999999999887653
No 253
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=62.33 E-value=20 Score=28.07 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCChHH-------HHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKE-------ALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~-------~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+.+++..+.|++ .+++-|++.|=..+. ..++++...+.|+++|| |.-.|.+
T Consensus 161 ~~~~~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~Ii---G~H~Hv~ 219 (239)
T cd07381 161 LERIAADIAEAKK---KADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVI---GHHPHVL 219 (239)
T ss_pred HHHHHHHHHHHhh---cCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEE---cCCCCcC
Confidence 4555555555554 389999999986643 46677776678999999 4555543
No 254
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=62.25 E-value=43 Score=27.46 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCCh-HHHHHHHHHHhhCCCeEE
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKII 117 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHRtp-~~~~~~~~~~~~~g~~Vi 117 (131)
++.+.++.+.+++.|+...+.+.-+.|+| +.+.++++.+.+-|++.|
T Consensus 111 ~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i 158 (262)
T cd07948 111 IESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRV 158 (262)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34455666777788999999998899997 888888888877787654
No 255
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.21 E-value=33 Score=29.01 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=42.9
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~SD-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
.++.|+.|.+.+ .-+++...+.++++||.+++.-.+++-+.+++.+.++...
T Consensus 33 ~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN 85 (281)
T PRK14183 33 GLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMN 85 (281)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888887654 4566677888999999999999999999999999987664
No 256
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=62.09 E-value=18 Score=25.69 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEc-CCCChHHHHHHHHHH
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSA 109 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~S-AHRtp~~~~~~~~~~ 109 (131)
+.=+.|++|.+.|++.||+|+++=+. -.-+.+++.++++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 44578999999999999999976654 344566777776543
No 257
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.94 E-value=12 Score=31.65 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
.+|+..|..+..+.++.+. .+++|+++|...-++
T Consensus 185 atVtvchs~T~~l~~~~k~-----ADIvV~AvGkp~~i~ 218 (284)
T PRK14193 185 ATVTLCHTGTRDLAAHTRR-----ADIIVAAAGVAHLVT 218 (284)
T ss_pred CEEEEeCCCCCCHHHHHHh-----CCEEEEecCCcCccC
Confidence 4577778877777777753 699999999986554
No 258
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=61.85 E-value=78 Score=28.65 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=61.2
Q ss_pred cCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC----CC
Q 032873 23 ASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH----QN 98 (131)
Q Consensus 23 ~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAH----Rt 98 (131)
+.....+-..|+.+-.+|..=..|.+..-.|.|..+.+|+||++.++ .....+..++++--=.+++-|...- -.
T Consensus 100 p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tg--AairDIl~~~~rR~P~~~viv~pt~VQG~~A 177 (440)
T COG1570 100 PAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTG--AALRDILHTLSRRFPSVEVIVYPTLVQGEGA 177 (440)
T ss_pred cCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCch--HHHHHHHHHHHhhCCCCeEEEEeccccCCCc
Confidence 44455666666666555432222444432444556668999998876 6677777787653323555555422 23
Q ss_pred hHHHHHHHHHHhhCC-CeEEEEecCc
Q 032873 99 CKEALSYALSAKERG-IKIIIVGDGV 123 (131)
Q Consensus 99 p~~~~~~~~~~~~~g-~~ViIA~AG~ 123 (131)
+.++.+-++.+..++ ++|+|.+=|+
T Consensus 178 ~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 178 AEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCc
Confidence 666777777777766 8999998876
No 259
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=61.81 E-value=26 Score=27.78 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCC-------hHHHHHHHHHHhhCCCeEEEE
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQN-------CKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRt-------p~~~~~~~~~~~~~g~~ViIA 119 (131)
+.+.+..+++.=.+++-|++.|-. .++..+++...-+.|+++||+
T Consensus 171 ~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG 222 (250)
T PF09587_consen 171 ERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIG 222 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEe
Confidence 556666666665789999999987 667788888888899999995
No 260
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.64 E-value=13 Score=31.37 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=25.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
.+|+..|.....+.++.+. .+++|+++|...-+
T Consensus 183 atVt~chs~t~~l~~~~~~-----ADIvI~AvG~p~~i 215 (284)
T PRK14190 183 ATVTYCHSKTKNLAELTKQ-----ADILIVAVGKPKLI 215 (284)
T ss_pred CEEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcC
Confidence 5677778888777777653 69999999987644
No 261
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=61.59 E-value=10 Score=33.00 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCee-------------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~e-------------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+.+.+.++|+.+||+++ .+|+..|.....+.++.++ .+|+|+++|...-+
T Consensus 197 Tp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~-----ADIvIsAvGkp~~v 271 (345)
T PLN02897 197 TPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRK-----ADIVIAAAGIPNLV 271 (345)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhh-----CCEEEEccCCcCcc
Confidence 45666777777777533 5777778777767777653 69999999998755
Q ss_pred c
Q 032873 128 S 128 (131)
Q Consensus 128 p 128 (131)
.
T Consensus 272 ~ 272 (345)
T PLN02897 272 R 272 (345)
T ss_pred C
Confidence 4
No 262
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=61.55 E-value=26 Score=24.77 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHH
Q 032873 71 LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALS 108 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~ 108 (131)
=+.|++|.+.|++.||+|+++ +..---+.+++.++++.
T Consensus 9 C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 9 CDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 367999999999999999966 44444577777777763
No 263
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=61.24 E-value=41 Score=27.75 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=40.6
Q ss_pred EEEEecc--CCCHHHHHHHHHHHHHhCCCeeEEEEc--CCC----Ch-HHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 61 VGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILP--PHQ----NC-KEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 61 V~IimGS--~SDl~~~~ka~~~L~~fGI~~ev~V~S--AHR----tp-~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
|+|+.=| ..|.+..+++.+.|+++|....+.=.. .|. ++ +|..++.+..++..++.|+|.-|+-.
T Consensus 1 I~ivaPS~~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg 74 (284)
T PF02016_consen 1 IGIVAPSLSPIDPERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYG 74 (284)
T ss_dssp EEEE-SSHHHHCHHHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-
T ss_pred CEEEeCCCCccCHHHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeecccc
Confidence 4555555 568899999999999999755443111 111 33 34555666667888999999999854
No 264
>PRK12757 cell division protein FtsN; Provisional
Probab=61.22 E-value=96 Score=26.09 Aligned_cols=65 Identities=17% Similarity=0.052 Sum_probs=52.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeE-------EE-EcCCCChHHHHHHHHHHhhCCC-eEEEEecCc
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-------KI-LPPHQNCKEALSYALSAKERGI-KIIIVGDGV 123 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev-------~V-~SAHRtp~~~~~~~~~~~~~g~-~ViIA~AG~ 123 (131)
....|=+||-+|..-++....-|...|++..+ || ++...+.+...++.+..+..|+ .+||..+|+
T Consensus 183 ~~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 183 QRWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred ccEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 44678899999999999999999988876442 22 4567788899999988888888 888888875
No 265
>smart00642 Aamy Alpha-amylase domain.
Probab=61.15 E-value=41 Score=25.56 Aligned_cols=49 Identities=27% Similarity=0.315 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEc------------------------CCCChHHHHHHHHHHhhCCCeEEE
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILP------------------------PHQNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~S------------------------AHRtp~~~~~~~~~~~~~g~~ViI 118 (131)
-|+.-+.+-...|+++|+..- .+.. .-=+.+++.++++.+.++|++|++
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I-~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAI-WLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEE-EECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 456666666668889988632 1111 122458899999999999999986
No 266
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=60.87 E-value=37 Score=27.28 Aligned_cols=57 Identities=14% Similarity=0.069 Sum_probs=41.2
Q ss_pred EEEEeccCCCH--------------HHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEE
Q 032873 61 VGIIMESDLDL--------------PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (131)
Q Consensus 61 V~IimGS~SDl--------------~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~Vi 117 (131)
..-+..|.||. +-+..+.+.+++.|+.+.+...-+.|. |+.+.++++.+.+-|++.|
T Consensus 85 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i 156 (259)
T cd07939 85 AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRL 156 (259)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEE
Confidence 44444578887 456677778888998777666666665 7888889988877787653
No 267
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.83 E-value=28 Score=29.42 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=37.9
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 57 ~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
..++|+||+|++| .+..++++.|-.-|. +|+=++|+.++..+.++...
T Consensus 33 ~~~~~~vVTGans--GIG~eta~~La~~Ga----~Vv~~~R~~~~~~~~~~~i~ 80 (314)
T KOG1208|consen 33 LSGKVALVTGATS--GIGFETARELALRGA----HVVLACRNEERGEEAKEQIQ 80 (314)
T ss_pred CCCcEEEEECCCC--chHHHHHHHHHhCCC----EEEEEeCCHHHHHHHHHHHH
Confidence 4468999999999 889999999999883 55557898877777765443
No 268
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=60.83 E-value=36 Score=25.43 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=34.3
Q ss_pred EeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCCh--HHHHHHHHHHhhCCC
Q 032873 64 IMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNC--KEALSYALSAKERGI 114 (131)
Q Consensus 64 imGS~SDl~-~~~ka~~~L~~fGI~~ev~V~SAHRtp--~~~~~~~~~~~~~g~ 114 (131)
++|...+.. ...++.+.|.+.|++..++++--.... +++.++++..++.|.
T Consensus 131 ~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei~~~~~~l~~~~~ 184 (191)
T TIGR02495 131 LYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLDEEDLAEIATRIKENGT 184 (191)
T ss_pred HHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHHHHHHHHhccCCc
Confidence 455544554 667777888889999888866432232 467778877777663
No 269
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=60.56 E-value=64 Score=26.55 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=39.3
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCC-eeEEEEcCC------------CChHHHHHHHHHHhh
Q 032873 58 APIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH------------QNCKEALSYALSAKE 111 (131)
Q Consensus 58 ~~~V~IimGS~SDl~~~~ka~~~L~~fGI~-~ev~V~SAH------------Rtp~~~~~~~~~~~~ 111 (131)
.|.++.+.|+. |.+.+.++++.+++.|.. +|+.+.++| +.|+.+.++++...+
T Consensus 100 ~p~i~si~G~~-~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~ 165 (299)
T cd02940 100 KILIASIMCEY-NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVRE 165 (299)
T ss_pred CeEEEEecCCC-CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHH
Confidence 46889999973 556666777788888875 788888877 358888888876643
No 270
>PRK05867 short chain dehydrogenase; Provisional
Probab=60.55 E-value=71 Score=24.41 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=25.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~ 106 (131)
.++++|+|..+ .+...+++.|-+.|. + |+-..|+++.+.++.
T Consensus 9 ~k~vlVtGas~--gIG~~ia~~l~~~G~--~--V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 9 GKRALITGAST--GIGKRVALAYVEAGA--Q--VAIAARHLDALEKLA 50 (253)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCC--E--EEEEcCCHHHHHHHH
Confidence 46888888877 446666666666664 2 333345555554443
No 271
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=60.53 E-value=78 Score=24.57 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=32.9
Q ss_pred eEEEEeccC--CCHH----HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 60 IVGIIMESD--LDLP----VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 60 ~V~IimGS~--SDl~----~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
+|++++-+. .|-+ +.+.+.+.++++|+. +.+.... .++...++++...+++++.||..
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~--~~i~~~~-~~~~~~~~i~~l~~~~vdgiI~~ 64 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIE--YKYVESK-SDADYEPNLEQLADAGYDLIVGV 64 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCe--EEEEecC-CHHHHHHHHHHHHhCCCCEEEEc
Confidence 356666431 2333 344555666777754 4444443 45666667766667777777764
No 272
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=60.33 E-value=70 Score=24.61 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=5.8
Q ss_pred HHHHHHhhCCCeEEE
Q 032873 104 SYALSAKERGIKIII 118 (131)
Q Consensus 104 ~~~~~~~~~g~~ViI 118 (131)
++++...+++++.||
T Consensus 48 ~~i~~~~~~~vdgiI 62 (268)
T cd06306 48 AQLEDCAAWGADAIL 62 (268)
T ss_pred HHHHHHHHcCCCEEE
Confidence 333333333444333
No 273
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=60.31 E-value=71 Score=24.03 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=29.9
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|++++.+.+| ....+.+.+.++++|+ ++.+...-..++...++++...+.+++-||..
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 62 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGY--STIIGNSDENPETENRYLDNLLSQRVDGIIVV 62 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 4555543222 2334455555666664 33444444456666666666656666555543
No 274
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=60.06 E-value=56 Score=26.04 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 78 ARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 78 ~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
.+.++++| |++.+.++.-.+++..++++.+..++++.||..
T Consensus 21 ~~~a~~~g--~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~ 61 (302)
T TIGR02634 21 VAAAESLG--AKVFVQSANGNEAKQISQIENLIARGVDVLVII 61 (302)
T ss_pred HHHHHhcC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 33334444 344455555555555556655555555555544
No 275
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.89 E-value=12 Score=31.65 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 74 ~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
.+..+..|.+.| .+|+..|...+.+.++.+. .+++|+++|...-+
T Consensus 171 GkPla~lL~~~~----atVt~~hs~t~~l~~~~~~-----ADIVV~avG~~~~i 215 (285)
T PRK14189 171 GKPMAMLLLQAG----ATVTICHSKTRDLAAHTRQ-----ADIVVAAVGKRNVL 215 (285)
T ss_pred HHHHHHHHHHCC----CEEEEecCCCCCHHHHhhh-----CCEEEEcCCCcCcc
Confidence 344444554444 4666678777777777653 69999999976544
No 276
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=59.74 E-value=40 Score=31.31 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChH-HHHHHHHHHhhCCCeEEEE
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQNCK-EALSYALSAKERGIKIIIV 119 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRtp~-~~~~~~~~~~~~g~~ViIA 119 (131)
.-+++-.+.++.||+|+-+-|--.--.++ ++..+.+.+++.|+.+.++
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~ 407 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALS 407 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 55667788889999999999998777777 6666668888899988754
No 277
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=59.62 E-value=27 Score=22.10 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=25.3
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC
Q 032873 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPH 96 (131)
Q Consensus 65 mGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAH 96 (131)
|=|.+.=+.|.+|.+.|++.||+|+..-+...
T Consensus 5 lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~ 36 (72)
T cd03029 5 LFTKPGCPFCARAKAALQENGISYEEIPLGKD 36 (72)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 33456779999999999999999986666543
No 278
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=59.56 E-value=75 Score=24.04 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=32.1
Q ss_pred EEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 61 V~IimGS~SDl---~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|++++.+.+|. ...+.+.+.+++.|. ++.+...-..+++..++++....++++.+|..+.
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGY--QLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 55666553331 122233344555554 4444444556666666666666667776666554
No 279
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=59.45 E-value=68 Score=23.57 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=40.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
|++++-+.++ ....+.+.+.++++|+. +.+......|++..+.++.+.+++++.+|.......
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~ 67 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYS--VLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLD 67 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCE--EEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcc
Confidence 4555544322 23344556666777754 455566677888888888888888888887766543
No 280
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=59.16 E-value=38 Score=28.63 Aligned_cols=51 Identities=6% Similarity=0.146 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCC-------------CChH-HHHHHHHHHhhCCCeEEEEe
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPH-------------QNCK-EALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAH-------------Rtp~-~~~~~~~~~~~~g~~ViIA~ 120 (131)
..+.+++.++.+++.+||+++-++-.+ |-|+ +..++++..+++|++|++-+
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 356677888888999999998888643 5565 34667777778999887754
No 281
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.15 E-value=75 Score=23.96 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
+.+.+.++++|+ ++.+......+++..++++....++++.+|..+
T Consensus 20 ~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 64 (275)
T cd06317 20 KAFQAAAEEDGV--EVIVLDANGDVARQAAQVEDLIAQKVDGIILWP 64 (275)
T ss_pred HHHHHHHHhcCC--EEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEec
Confidence 344444555653 334444455566666666555555566555443
No 282
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=59.14 E-value=18 Score=30.15 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=37.5
Q ss_pred CeEEEEecc---CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMES---DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS---~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..++||+|+ .--+..+++..+.|++-|..+.+-+. =.=+|+++..|- ++++||-+|
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~-~~i~~~kL~nf~------eid~fV~~a 268 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSV-GEINPAKLANFP------EIDAFVQIA 268 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEE-SS--GGGGTTS---------SEEEE-S
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEE-CCCCHHHHhcCc------ccCEEEEec
Confidence 479999995 77888999999999999998765544 677899988885 367777665
No 283
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=59.13 E-value=73 Score=23.82 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=8.9
Q ss_pred ChHHHHHHHHHHhhCCCeEEEE
Q 032873 98 NCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 98 tp~~~~~~~~~~~~~g~~ViIA 119 (131)
.+++..+.++....++++.+|.
T Consensus 40 ~~~~~~~~~~~l~~~~vdgiii 61 (266)
T cd06282 40 DAEREADAVETLLRQRVDGLIL 61 (266)
T ss_pred CHHHHHHHHHHHHhcCCCEEEE
Confidence 3444444443333334444443
No 284
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.93 E-value=11 Score=31.92 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=25.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
.+|+..|+..+.+.++++. ++++|+++|...-+
T Consensus 184 atVtv~hs~T~~l~~~~~~-----ADIvi~avG~p~~v 216 (285)
T PRK10792 184 CTVTVCHRFTKNLRHHVRN-----ADLLVVAVGKPGFI 216 (285)
T ss_pred CeEEEEECCCCCHHHHHhh-----CCEEEEcCCCcccc
Confidence 5677779888877777653 69999999987654
No 285
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.91 E-value=17 Score=30.84 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCee-----------------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 73 VMNDAARTLSDFGVPYE-----------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~e-----------------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
+...+.++|+.+||+++ .+|...|.....+.++.+. .+++|++.|.
T Consensus 140 Tp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~-----ADIVI~AvG~ 214 (286)
T PRK14184 140 TPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECRE-----ADFLFVAIGR 214 (286)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHh-----CCEEEEecCC
Confidence 45667778888887752 5788899988888887753 6999999987
Q ss_pred CCcC
Q 032873 124 EAHL 127 (131)
Q Consensus 124 aAhL 127 (131)
..-+
T Consensus 215 p~li 218 (286)
T PRK14184 215 PRFV 218 (286)
T ss_pred CCcC
Confidence 6543
No 286
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=58.76 E-value=41 Score=29.39 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=43.1
Q ss_pred CeEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~SDl~-~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
.++.|+.|.+.|-. +++...+.|+++||.+++.-.+..-+-+++.+.++...
T Consensus 88 ~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN 140 (345)
T PLN02897 88 GLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFN 140 (345)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 58889999876654 55666788999999999999999988999999987664
No 287
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.49 E-value=37 Score=28.86 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=41.9
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~SDl-~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
.++.|+.|.+.+- ..++...+.|+++||.+++.-.+..-+.+++.+.++...
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (293)
T PRK14185 33 HLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELN 85 (293)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4788888876554 445566889999999999999999989999999887664
No 288
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=58.40 E-value=21 Score=25.09 Aligned_cols=30 Identities=13% Similarity=0.357 Sum_probs=25.2
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEE
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIK 91 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~ev~ 91 (131)
.+++..|.|-.++.+....|++.||||..-
T Consensus 32 ~v~iA~Da~~~vv~~l~~lceek~Ip~v~V 61 (84)
T PRK13600 32 SLIIAEDVEVYLMTRVLSQINQKNIPVSFF 61 (84)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 466677777889999999999999998753
No 289
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=58.26 E-value=41 Score=29.62 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=42.4
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh
Q 032873 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~ 111 (131)
.++.|+.|.+. +.-.++...+.|+++||.++..-....-+.+++.++++...+
T Consensus 105 ~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 105 GLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57888889775 455666678899999999988878888888899999876643
No 290
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=58.03 E-value=54 Score=28.20 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=51.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh---CCCeeEEEEcCCCChH-----------HHHHHHHHHhhCCCeEEEEec
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDF---GVPYEIKILPPHQNCK-----------EALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~f---GI~~ev~V~SAHRtp~-----------~~~~~~~~~~~~g~~ViIA~A 121 (131)
...+|=|=..|.+.+++.++.++.+ |..+.+.++-.|..++ ++.+|.+..++.|+.|.|--.
T Consensus 252 ry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~ 327 (347)
T PRK14453 252 AYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQ 327 (347)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 4677888888999999999999988 5578999999998654 478888888899999988543
No 291
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=57.02 E-value=47 Score=21.33 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEc
Q 032873 72 PVMNDAARTLSDFGVPYEIKILP 94 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~S 94 (131)
+.|.++...|++.||+|++.-++
T Consensus 11 p~~~kv~~~L~~~gi~y~~~~v~ 33 (77)
T cd03041 11 PFCRLVREVLTELELDVILYPCP 33 (77)
T ss_pred chHHHHHHHHHHcCCcEEEEECC
Confidence 68999999999999999987665
No 292
>PRK13059 putative lipid kinase; Reviewed
Probab=57.02 E-value=38 Score=27.67 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=32.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
|+..+....+++.+.|++-|+.+.+...+-+... +.+..+...+.+++|++-|
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~d~vi~~GG 65 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDL----KNAFKDIDESYKYILIAGG 65 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH----HHHHHHhhcCCCEEEEECC
Confidence 5555566778888999999988776555433222 2233444566777765533
No 293
>PRK12361 hypothetical protein; Provisional
Probab=56.76 E-value=30 Score=30.90 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=38.3
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 60 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 60 ~V~Iim----GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
++.+|. |+.......+++.+.|++. +++++..+.. .....++++++.+.+++++|++-|
T Consensus 244 ~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~~---~~~a~~la~~~~~~~~d~Viv~GG 306 (547)
T PRK12361 244 RAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLTTP---EISAEALAKQARKAGADIVIACGG 306 (547)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEECCC---CccHHHHHHHHHhcCCCEEEEECC
Confidence 455554 6655667888898889884 5555554432 344567777776777888776544
No 294
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=56.75 E-value=36 Score=27.70 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=34.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH-HHHhhCCCeEEEE
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIV 119 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~-~~~~~~g~~ViIA 119 (131)
.+.+|++.+++|.+++ -.|-|.|+.+ ..+|+ +.+++.|.+|.-+
T Consensus 122 ~rhaDr~Fl~~Ale~s--------~vVYsiH~a~--~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 122 RRHADRPFLLKALEIS--------DVVYSIHKAG--SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cccCCHHHHHHHHHhh--------heEEEeeccc--cHHHHHHHHHhcCCeEEEE
Confidence 4569999999999997 4688999999 66777 6667788766544
No 295
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=56.55 E-value=27 Score=24.22 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=25.8
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCee
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYE 89 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~e 89 (131)
-.||+.++.+-.+.++....++..+||+.
T Consensus 26 kLViiA~Da~~~~~k~i~~~c~~~~Vpv~ 54 (82)
T PRK13601 26 LQVYIAKDAEEHVTKKIKELCEEKSIKIV 54 (82)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhCCCCEE
Confidence 46788888888999999999999999994
No 296
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=56.49 E-value=53 Score=23.72 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=45.0
Q ss_pred EEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh-h-CCCeEEEEe
Q 032873 63 IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK-E-RGIKIIIVG 120 (131)
Q Consensus 63 IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~-~-~g~~ViIA~ 120 (131)
|+|=|.|=-+.|..+..+|..+|+++.+--+=-|-.+.++.+++.... . .=..|||.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~G 75 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGG 75 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECC
Confidence 344466888999999999999999999888889999999999886443 1 223777764
No 297
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=56.23 E-value=63 Score=26.86 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=44.9
Q ss_pred eEEEEeccC----CCHHHHHHHHHHHHHhCCCeeEEEEc-------CCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESD----LDLPVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~----SDl~~~~ka~~~L~~fGI~~ev~V~S-------AHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
+|+|+.=|. .+.+..+.+.+.|+.+|..+.+.=.. |.-.-++..++.+...+..++.|+++-|+-.
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 78 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDD 78 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccC
Confidence 356665443 23688999999999998865433221 1112356667777778888999999999854
No 298
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=56.17 E-value=31 Score=25.46 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHH
Q 032873 71 LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALS 108 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~ 108 (131)
=..|+||.+.|++-||+|+++ +..---+.+++.++++.
T Consensus 11 Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 11 CANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred CHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 468999999999999999976 44455567778778764
No 299
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.70 E-value=86 Score=26.99 Aligned_cols=60 Identities=8% Similarity=0.106 Sum_probs=48.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------hHHHHHHHHHHhhCCCeEEEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt---------p~~~~~~~~~~~~~g~~ViIA 119 (131)
...+|=|=..+.+.+++.++.|+.++..+.+.++-.|.. ++++.+|.+..++.|+.|.|=
T Consensus 256 eyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 256 EYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred EEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 356677888889999999999998865678888888863 467777877788889999875
No 300
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.68 E-value=16 Score=31.10 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
+.++.+..|.+-|+....+|+..|.....+.++.+. ++++|+++|.+.-++
T Consensus 169 VGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~-----ADIvIsAvGkp~~i~ 219 (293)
T PRK14185 169 VGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLE-----ADIIIAALGQPEFVK 219 (293)
T ss_pred chHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 344444444444433357788889888888888753 699999999987654
No 301
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.60 E-value=87 Score=23.92 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHhCC
Q 032873 70 DLPVMNDAARTLSDFGV 86 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI 86 (131)
|.....+..+.|...++
T Consensus 42 ~~~~~~~~i~~l~~~~v 58 (271)
T cd06312 42 DVADMARLIEAAIAAKP 58 (271)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 54444444444444443
No 302
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=54.99 E-value=61 Score=28.11 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=39.9
Q ss_pred CeEEEEeccCC---CH------HHHHHHHHHHHHhCCCeeEEEEcCC-CChHHHHHHHHHHhhCCCeEEEEe
Q 032873 59 PIVGIIMESDL---DL------PVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 59 ~~V~IimGS~S---Dl------~~~~ka~~~L~~fGI~~ev~V~SAH-Rtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
++|+++.||.. .. ...+++.+.|++.|+ ++.....= .++++..+.++.++..+++.+|..
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 70 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPV--EVVDKPEVTGTPDEARKAAEEFNEANCDGLIVW 70 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCc--eEEecCcccCCHHHHHHHHHHHhhcCCcEEEEc
Confidence 37899999988 32 234455555665544 54444433 488889998888887788887763
No 303
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.89 E-value=87 Score=23.40 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=26.7
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 61 V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
|+++..+.+| ....+.+.+.++++|+.+. +....... ...+.++.+..++++.||..+
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~~~--~~~~~~~~-~~~~~i~~~~~~~vdgiii~~ 62 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQPL--LINTDDDE-DLDAALRQLLQYRVDGVIVTS 62 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCeEE--EEcCCCCH-HHHHHHHHHHHcCCCEEEEec
Confidence 4455544333 2233444555666665433 33332222 344455555555665555543
No 304
>PRK09389 (R)-citramalate synthase; Provisional
Probab=54.88 E-value=90 Score=28.02 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=44.5
Q ss_pred EEEEeccCCCH--------------HHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEEE
Q 032873 61 VGIIMESDLDL--------------PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIII 118 (131)
Q Consensus 61 V~IimGS~SDl--------------~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~ViI 118 (131)
+.-+..+.||+ +.+.++.+.+++.|..+++....+.|+ |+.+.++++.+.+-|++.|.
T Consensus 89 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~ 161 (488)
T PRK09389 89 SVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRIC 161 (488)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 45556688998 455566677788999888888889988 67777888888887887643
No 305
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=54.58 E-value=70 Score=22.16 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=38.3
Q ss_pred eEEEEeccCCCHHHH--HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 60 IVGIIMESDLDLPVM--NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 60 ~V~IimGS~SDl~~~--~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
+|.++.||--=-..| +++.+.|++.|+++++.=++ ..++..++ .++++||+..-..
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~----~~e~~~~~-----~~~D~iv~t~~~~ 61 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR----VNEIETYM-----DGVHLICTTARVD 61 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEec----HHHHhhhc-----CCCCEEEECCccc
Confidence 688888886655555 88899999999998866443 33333332 3478888775433
No 306
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=54.54 E-value=1.1e+02 Score=24.84 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=21.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCC-eeEEEEcCC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH 96 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~-~ev~V~SAH 96 (131)
|.++-|+|+ |.+-..++++.+++.|.. +|+.+.|.|
T Consensus 91 p~ivsi~g~--~~~~~~~~a~~~~~~G~d~iElN~~cP~ 127 (296)
T cd04740 91 PVIASIAGS--TVEEFVEVAEKLADAGADAIELNISCPN 127 (296)
T ss_pred cEEEEEecC--CHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 566666664 345555666666666654 456555544
No 307
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.37 E-value=50 Score=27.29 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=41.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCCeeEEEEc-------------CCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 67 SDLDLPVMNDAARTLSDFGVPYEIKILP-------------PHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 67 S~SDl~~~~ka~~~L~~fGI~~ev~V~S-------------AHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..-+...+.+.++.++++|||+++-++- ..|-|+ ..+++++..+.|.++.+-+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPd-p~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPD-PKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCC-HHHHHHHHHHCCCeEEEEEC
Confidence 3456677788888999999999977663 345565 77888888899999887543
No 308
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=54.33 E-value=25 Score=29.73 Aligned_cols=44 Identities=30% Similarity=0.395 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCee-----EEEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 73 VMNDAARTLSDFGVPYE-----IKILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~e-----v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
+-++|.++|++|||+|+ +-|. -.++-..+++..+-+-|.++|-.
T Consensus 81 v~~~a~~iL~e~gI~ye~~e~g~~v~---ds~e~~skl~~~a~~aGaki~n~ 129 (262)
T COG1635 81 VREEADEILDEFGIRYEEEEDGYYVA---DSAEFASKLAARALDAGAKIFNG 129 (262)
T ss_pred ecchHHHHHHHhCCcceecCCceEEe---cHHHHHHHHHHHHHhcCceeeec
Confidence 45789999999999998 3332 23455556665555667888754
No 309
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=54.25 E-value=50 Score=27.41 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=40.5
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeE
Q 032873 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI 116 (131)
Q Consensus 65 mGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~V 116 (131)
.|....+..+.++.+.|++.|+++.+..+--..+.+++.++++.+.+.|++-
T Consensus 125 rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~~ 176 (358)
T TIGR02109 125 AGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGADR 176 (358)
T ss_pred cCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCCE
Confidence 4555457777778888999999988877666678888999988888888753
No 310
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=54.24 E-value=42 Score=25.19 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=37.5
Q ss_pred EEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHH
Q 032873 63 IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109 (131)
Q Consensus 63 IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~ 109 (131)
.|.||+- .+.+.+.++++++.=.|++.-.+||++.+++.+.+++.
T Consensus 2 ~ILGsTG--SIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f 46 (129)
T PF02670_consen 2 AILGSTG--SIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREF 46 (129)
T ss_dssp EEESTTS--HHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHH
T ss_pred EEEcCCc--HHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHh
Confidence 3455553 68899999999998889999999999999999988665
No 311
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.19 E-value=25 Score=29.74 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
+.++.+..|.+-| .+|+..|...+.+.++++. ++++|++.|...-+.
T Consensus 169 VG~Pla~lL~~~g----AtVtv~hs~t~~l~~~~~~-----ADIvV~AvG~p~~i~ 215 (285)
T PRK14191 169 VGKPLAMLMLNAG----ASVSVCHILTKDLSFYTQN-----ADIVCVGVGKPDLIK 215 (285)
T ss_pred hHHHHHHHHHHCC----CEEEEEeCCcHHHHHHHHh-----CCEEEEecCCCCcCC
Confidence 4445555554443 3455568777777766653 699999999876554
No 312
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=54.08 E-value=76 Score=22.42 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCC-eEEEEecC
Q 032873 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI-KIIIVGDG 122 (131)
Q Consensus 74 ~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~-~ViIA~AG 122 (131)
.+++...|...+..+++..+.. ++....+......+.. ++||++-|
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~ivv~GG 63 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETES---AGHAEALARILALDDYPDVIVVVGG 63 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS---TTHHHHHHHHHHHTTS-SEEEEEES
T ss_pred HHHHHHHHHHcCCceEEEEEec---cchHHHHHHHHhhccCccEEEEEcC
Confidence 3788899999999999888866 3333333332233333 55555544
No 313
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=54.05 E-value=37 Score=30.15 Aligned_cols=52 Identities=10% Similarity=-0.097 Sum_probs=47.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC-CCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFG-VPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fG-I~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
-+|++|.|---|+-.|......|++-+ +++-+-++.-||.++-...|.+..+
T Consensus 4 ~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~ 56 (383)
T COG0381 4 LKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFG 56 (383)
T ss_pred eEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhC
Confidence 389999999999999999999999988 9999999999999999999987654
No 314
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=54.00 E-value=38 Score=24.74 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=32.1
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEc-CCCChHHHHHHHHHH
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSA 109 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~S-AHRtp~~~~~~~~~~ 109 (131)
|.|+.+ =..|++|.+.|++.||+|++.-.. --=+.+++.++++..
T Consensus 5 iy~~p~-C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 5 IYGNPN-CSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL 50 (117)
T ss_pred EEeCCC-ChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc
Confidence 344433 248999999999999999977554 445667777777654
No 315
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=53.74 E-value=1.1e+02 Score=28.34 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=49.5
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE---cCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~---SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+.-|.=+-+|++.++.+.+..++.|...+..|+ |+=-+++.+.++++.+.+.|++ .|+++-+++.|
T Consensus 113 ~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad-~i~i~Dt~G~l 181 (593)
T PRK14040 113 VFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVD-SLCIKDMAGLL 181 (593)
T ss_pred EEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCC-EEEECCCCCCc
Confidence 444445789999999999999999997665555 4433789999999999888887 45555555443
No 316
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=53.52 E-value=45 Score=20.49 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=25.3
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCh
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNC 99 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp 99 (131)
|+|+.-..++........+.|...+ +++.++|.+..+
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~ 37 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAG--AEVDVVSPDGGP 37 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCC--CeEEEEcCCCCc
Confidence 4566666777767777777787777 566666666554
No 317
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=53.48 E-value=26 Score=25.58 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEE
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViI 118 (131)
+++.+.|++.||+|+..-...-++.++..++......+-+|.++
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll 45 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALL 45 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEE
Confidence 56778899999999997665556666665554333333344444
No 318
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=52.88 E-value=92 Score=23.59 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=22.2
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEE
Q 032873 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 65 mGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViI 118 (131)
..+..|.....+..+.|...++ +--|+.++. ++...+.++.+.+.|+.++.
T Consensus 36 ~~~~~~~~~~~~~i~~l~~~~v--dgiii~~~~-~~~~~~~~~~l~~~~iPvv~ 86 (272)
T cd06301 36 EDAKNDVATQLSQVENFIAQGV--DAIIVVPVD-TAATAPIVKAANAAGIPLVY 86 (272)
T ss_pred eCCCCCHHHHHHHHHHHHHcCC--CEEEEecCc-hhhhHHHHHHHHHCCCeEEE
Confidence 3445555555555555555554 333333322 22223333334445554443
No 319
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=52.86 E-value=56 Score=25.59 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=37.6
Q ss_pred eEEEEecc-CCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CChHHHHHHHHHHhhCCCeEEEE
Q 032873 60 IVGIIMES-DLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 60 ~V~IimGS-~SDl~~~~ka~~~L~~fGI~~ev~V~SAH---Rtp~~~~~~~~~~~~~g~~ViIA 119 (131)
+|++|+|= .-..+..+.+.....+.....++.+-++. +.|+.+.++.+..+. .++||+
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia~--ADii~~ 63 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIAR--ADIIFG 63 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHHh--CCEEEe
Confidence 35555554 44444444555554566777888888865 999888887765544 678876
No 320
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.84 E-value=68 Score=27.31 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEE
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~Vi 117 (131)
++.+.++.+.+++.|..+.+..--+.|+ |+.+.++++.+.+-|++.|
T Consensus 112 l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 112 LERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 5667788888889998877777777776 7888889988888888754
No 321
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=52.47 E-value=1.3e+02 Score=24.61 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=50.0
Q ss_pred hcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcC--CCChHHHHHH
Q 032873 31 SRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPP--HQNCKEALSY 105 (131)
Q Consensus 31 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SA--HRtp~~~~~~ 105 (131)
..+.|-+.|...+. +.| +........|+++.-+.++ ....+.+.+.++++|+. +.+... .-..++..+.
T Consensus 23 ~~~~~~~~~~~~Lg-Y~P---n~~Ar~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~--l~i~~~~~~~~~~~q~~~ 96 (343)
T PRK10936 23 NLLTWHLAQRTSLQ-YSP---LLKAKKAWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVD--LKVLEAGGYYNLAKQQQQ 96 (343)
T ss_pred hHHHHHHHhhcccc-ccc---ccccCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhCCE--EEEEcCCCCCCHHHHHHH
Confidence 34567666655441 112 2223345689988865433 22334566677888864 444433 2346667777
Q ss_pred HHHHhhCCCeEEEEec
Q 032873 106 ALSAKERGIKIIIVGD 121 (131)
Q Consensus 106 ~~~~~~~g~~ViIA~A 121 (131)
++...+++++.||...
T Consensus 97 i~~l~~~~vdgIIl~~ 112 (343)
T PRK10936 97 LEQCVAWGADAILLGA 112 (343)
T ss_pred HHHHHHhCCCEEEEeC
Confidence 8777788888777654
No 322
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=52.21 E-value=1e+02 Score=23.37 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=39.8
Q ss_pred CeEEEEeccCCCHHH----HHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHh-hCCCeEEEEecCcC
Q 032873 59 PIVGIIMESDLDLPV----MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK-ERGIKIIIVGDGVE 124 (131)
Q Consensus 59 ~~V~IimGS~SDl~~----~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~-~~g~~ViIA~AG~a 124 (131)
++|+||.-|++-... ..-....|+++|++.....+ ..-.++.+.+.++.+- .++++++|...|.+
T Consensus 5 ~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~i-v~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 5 LRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAI-VKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred cEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 578888766532221 22345568899986543322 4567777777776653 35689988885543
No 323
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=52.12 E-value=1.1e+02 Score=23.66 Aligned_cols=65 Identities=22% Similarity=0.095 Sum_probs=42.0
Q ss_pred CeEEEEeccCCCHHHHHHH----HHHHHHh---CCCeeEEEEcCCCChHHHHHHHHHHh-hCCCeEEEEecCcC
Q 032873 59 PIVGIIMESDLDLPVMNDA----ARTLSDF---GVPYEIKILPPHQNCKEALSYALSAK-ERGIKIIIVGDGVE 124 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka----~~~L~~f---GI~~ev~V~SAHRtp~~~~~~~~~~~-~~g~~ViIA~AG~a 124 (131)
..+.|+..|.-| .-.+++ .+.++.+ |+++++..+..+..++-+.++.+... ..+..|+|..+|+-
T Consensus 26 ~~~vilv~~~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~vd~~d~~~~~~~v~~~i~~~~~~~v~vnlsgG~ 98 (203)
T TIGR01884 26 GDLVILVKSPIE-DGARRAVESLRAIISDLGGNLVEGTIKEIELKDVPSILRQMSDIIKEEREPRVIINLSGGM 98 (203)
T ss_pred CcEEEEEcCCCc-hHHHHHHHHHHHHHHHhccCCCcceEEEEecCCHHHHHHHHHHHHHhcccCcEEEEcCCCc
Confidence 467788887743 333444 4444444 78999999988877766666664433 23345898988874
No 324
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=51.92 E-value=21 Score=23.08 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEE
Q 032873 68 DLDLPVMNDAARTLSDFGVPYEIKI 92 (131)
Q Consensus 68 ~SDl~~~~ka~~~L~~fGI~~ev~V 92 (131)
..|.+.++.....|.+|||...+..
T Consensus 28 ~~s~~ll~~v~~lL~~lGi~~~i~~ 52 (77)
T PF14528_consen 28 SKSKELLEDVQKLLLRLGIKASIYE 52 (77)
T ss_dssp ES-HHHHHHHHHHHHHTT--EEEEE
T ss_pred ECCHHHHHHHHHHHHHCCCeeEEEE
Confidence 4788999999999999999876653
No 325
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=51.81 E-value=65 Score=26.89 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=40.9
Q ss_pred CeEEEEeccCCCH-----HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 59 PIVGIIMESDLDL-----PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 59 ~~V~IimGS~SDl-----~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
.+|+||. +++|+ ..++...+.|++.|+.+...... ...+..+.++++..+..+ +|||..+.
T Consensus 138 ~~vaiiy-~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~-~~~~~d~~~~l~~ik~~~-rvii~~~~ 203 (387)
T cd06386 138 RSALLVY-EDDKQERNCYFTLEGVHHVFQEEGYHMSIYPFD-ETKDLDLDEIIRAIQASE-RVVIMCAG 203 (387)
T ss_pred eEEEEEE-EcCCCCccceehHHHHHHHHHhcCceEEEEecC-CCCcccHHHHHHHHHhcC-cEEEEecC
Confidence 4688886 44442 23677778888999877664432 334557777887777777 88887754
No 326
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=51.79 E-value=97 Score=22.99 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=44.2
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCee---------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYE---------------IKILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~e---------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
..+.|.-+-...++....-|..+|+++. +-++|-.....++.+.++.++++|++|+--
T Consensus 33 I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~I 105 (179)
T TIGR03127 33 IFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAI 105 (179)
T ss_pred EEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEE
Confidence 4555555556888888888888887653 566777788899999999999999877543
No 327
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=51.52 E-value=81 Score=26.46 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=42.1
Q ss_pred eEEEEeccC-C-CHHHHHHHHHHHHHhCCCeeEEEEcCCC----------ChHHHHHHHHHH--hhCCCeEEEEecCcCC
Q 032873 60 IVGIIMESD-L-DLPVMNDAARTLSDFGVPYEIKILPPHQ----------NCKEALSYALSA--KERGIKIIIVGDGVEA 125 (131)
Q Consensus 60 ~V~IimGS~-S-Dl~~~~ka~~~L~~fGI~~ev~V~SAHR----------tp~~~~~~~~~~--~~~g~~ViIA~AG~aA 125 (131)
+|+||.=|. - +.+..+.+.+.|+++|..+.+ +.|. .-+|..++.+.. .+. ++.|+++-|+-.
T Consensus 3 ~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v~~---~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg 78 (305)
T PRK11253 3 LFHLIAPSGYPIDQAAALRGVQRLTDAGHQVEN---VEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYG 78 (305)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHhCCCEEee---ccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCC
Confidence 588888774 2 778899999999999986432 2321 123444555544 455 999999999854
No 328
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=51.36 E-value=36 Score=21.79 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=24.7
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPP 95 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~SA 95 (131)
+-+..+ +-+.++.-.|+..|++|++..+..
T Consensus 4 Ly~~~~--~~~~~v~~~l~~~gl~~~~~~~~~ 33 (81)
T cd03048 4 LYTHGT--PNGFKVSIMLEELGLPYEIHPVDI 33 (81)
T ss_pred EEeCCC--CChHHHHHHHHHcCCCcEEEEecC
Confidence 445554 889999999999999999887764
No 329
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=51.05 E-value=1.2e+02 Score=24.02 Aligned_cols=63 Identities=16% Similarity=0.044 Sum_probs=45.3
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCee--------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~e--------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..++|..+=...++....-|..+|+++. +-++|.-+..+++.+.++.++++|++|+.--.
T Consensus 131 I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~ 210 (278)
T PRK11557 131 IILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITG 210 (278)
T ss_pred EEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcC
Confidence 4555555668888888888888887643 45667777788888888888888887765444
Q ss_pred CcC
Q 032873 122 GVE 124 (131)
Q Consensus 122 G~a 124 (131)
...
T Consensus 211 ~~~ 213 (278)
T PRK11557 211 FTP 213 (278)
T ss_pred CCC
Confidence 333
No 330
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=50.95 E-value=1.4e+02 Score=26.70 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=50.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE---cCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~---SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
.+.-|.-+-||...++++.+..++.|..+++.++ +.--+++.+.++++.+.+-|++. |+++-+++.|
T Consensus 111 d~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~-I~i~Dt~G~l 180 (448)
T PRK12331 111 DIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADS-ICIKDMAGIL 180 (448)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE-EEEcCCCCCC
Confidence 4555666789999999999999999987765544 33446799999999888888874 6666665543
No 331
>PRK06683 hypothetical protein; Provisional
Probab=50.88 E-value=36 Score=23.39 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=36.2
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
-.||..++.|-.+.++....++..+||+...= +-+++-.. -|+.|-+|+++
T Consensus 29 klViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~-----t~~eLG~A------~G~~~~~a~~a 79 (82)
T PRK06683 29 KEVVIAEDADMRLTHVIIRTALQHNIPITKVE-----SVRKLGKV------AGIQVGASAIG 79 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC-----CHHHHHHH------hCCcccEEEEE
Confidence 56788899999999999999999999984331 33333332 35666666654
No 332
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.46 E-value=1.2e+02 Score=23.61 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=9.5
Q ss_pred ChHHHHHHHHHHhhCCCeEEEE
Q 032873 98 NCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 98 tp~~~~~~~~~~~~~g~~ViIA 119 (131)
.++...++++.+-.++++.||-
T Consensus 41 ~~~~~~~~l~~~~~~~~dgiii 62 (294)
T cd06316 41 DPAKQVADIETTISQKPDIIIS 62 (294)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE
Confidence 3444444444443444544433
No 333
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=50.31 E-value=40 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=27.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP 94 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~S 94 (131)
..|.+.+. +.=+.|.++.+.|+++||+|+..-+.
T Consensus 8 ~~V~ly~~--~~Cp~C~~ak~~L~~~gi~y~~idi~ 41 (79)
T TIGR02190 8 ESVVVFTK--PGCPFCAKAKATLKEKGYDFEEIPLG 41 (79)
T ss_pred CCEEEEEC--CCCHhHHHHHHHHHHcCCCcEEEECC
Confidence 35665554 66799999999999999999976554
No 334
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=50.15 E-value=1.1e+02 Score=23.98 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhC
Q 032873 72 PVMNDAARTLSDFG 85 (131)
Q Consensus 72 ~~~~ka~~~L~~fG 85 (131)
+.+++.++.|+.++
T Consensus 179 ~ei~~l~~~l~~l~ 192 (246)
T PRK11145 179 DSAHRLGEFIKDMG 192 (246)
T ss_pred HHHHHHHHHHHhcC
Confidence 34445555554443
No 335
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=50.11 E-value=1.1e+02 Score=25.06 Aligned_cols=57 Identities=25% Similarity=0.174 Sum_probs=44.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCee--------------------EEEEcCCCChHHHHHHHHHHhhCCCeEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~e--------------------v~V~SAHRtp~~~~~~~~~~~~~g~~Vi 117 (131)
+|.++-+. +=..+++....-|..+|+++. +-++|.-+...++.+.++.++++|++||
T Consensus 132 rI~~~G~g-~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vI 208 (281)
T COG1737 132 RIYFFGLG-SSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVI 208 (281)
T ss_pred eEEEEEec-hhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEE
Confidence 46555544 445788888888888888644 6788888999999999999999998765
No 336
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=49.94 E-value=81 Score=22.71 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 76 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 76 ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
-....|+++|...... .-..-.++.+.+.++.+-++ ++++|..-|.+
T Consensus 23 ~l~~~l~~~G~~v~~~-~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g 69 (133)
T cd00758 23 ALEALLEDLGCEVIYA-GVVPDDADSIRAALIEASRE-ADLVLTTGGTG 69 (133)
T ss_pred HHHHHHHHCCCEEEEe-eecCCCHHHHHHHHHHHHhc-CCEEEECCCCC
Confidence 4455688999665332 23567888888888776554 88888876544
No 337
>PRK06940 short chain dehydrogenase; Provisional
Probab=49.94 E-value=1.1e+02 Score=24.05 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhh-CCCeEEEEecCc
Q 032873 99 CKEALSYALSAKE-RGIKIIIVGDGV 123 (131)
Q Consensus 99 p~~~~~~~~~~~~-~g~~ViIA~AG~ 123 (131)
++.+.++++..+. ..++++|..||.
T Consensus 61 ~~~i~~~~~~~~~~g~id~li~nAG~ 86 (275)
T PRK06940 61 RESVKALAATAQTLGPVTGLVHTAGV 86 (275)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 4444444433221 346777777775
No 338
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=49.76 E-value=1.3e+02 Score=27.14 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=51.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE---cCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL---PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~---SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
..+.-|.-|-||+.-++.+.+..++.|..++..++ ++=-+++.+.++++.+.+.|++ .|+++-+++.|
T Consensus 109 vd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad-~I~i~Dt~G~l 179 (467)
T PRK14041 109 LDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVD-SICIKDMAGLL 179 (467)
T ss_pred cCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-EEEECCccCCc
Confidence 35666777889999999999999999998775554 2222578899999888888887 46666655443
No 339
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=49.46 E-value=46 Score=19.23 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChHH
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKE 101 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~ 101 (131)
+.+.++...|+..||+|+...+........
T Consensus 10 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 39 (71)
T cd00570 10 PRSLRVRLALEEKGLPYELVPVDLGEGEQE 39 (71)
T ss_pred ccHHHHHHHHHHcCCCcEEEEeCCCCCCCH
Confidence 688999999999999999888876554443
No 340
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=49.11 E-value=70 Score=27.49 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=42.7
Q ss_pred EEEEeccCCCH--------------HHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEE
Q 032873 61 VGIIMESDLDL--------------PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (131)
Q Consensus 61 V~IimGS~SDl--------------~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~Vi 117 (131)
..-+..+.||. +.+.++.+.+++.|..+.+..--+.|+ |+.+.++++.+.+-|++.|
T Consensus 91 ~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I 162 (378)
T PRK11858 91 AVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRV 162 (378)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 44455578996 777888888899998777665566665 7888889988888888654
No 341
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=48.86 E-value=81 Score=26.28 Aligned_cols=52 Identities=10% Similarity=-0.013 Sum_probs=40.6
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcC-CCChHHHHHHHHHHhhCCCeEE
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPP-HQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SA-HRtp~~~~~~~~~~~~~g~~Vi 117 (131)
|....++.+.++.+.|.+.|+++.+..+-. -.+++++.++++.+.+.|++-+
T Consensus 143 ~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i 195 (318)
T TIGR03470 143 CREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGM 195 (318)
T ss_pred cCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 555678888899999999999877755432 3589999999999988888433
No 342
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=48.79 E-value=31 Score=27.73 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=23.8
Q ss_pred eEEEEeccCCCH-----HHHHHHHHHHHHhCCCee
Q 032873 60 IVGIIMESDLDL-----PVMNDAARTLSDFGVPYE 89 (131)
Q Consensus 60 ~V~IimGS~SDl-----~~~~ka~~~L~~fGI~~e 89 (131)
+|+||+|+.|+. .....+.+.|++.|....
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~ 35 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVY 35 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEE
Confidence 589999999974 456788899999887543
No 343
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.55 E-value=96 Score=23.95 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=26.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
.-.++..+..|.....+..+.+-..++ +--|+++.. ++...+.++.+...|+.|+..
T Consensus 30 ~~~~~~~~~~d~~~~~~~i~~~~~~~v--dgiii~~~~-~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 30 VDVTWYGGALDAVKQVAAIENMASQGW--DFIAVDPLG-IGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHcCC--CEEEEcCCC-hHHhHHHHHHHHHCCCcEEEe
Confidence 344445555566555555555554444 333343332 233334444444445554443
No 344
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=48.29 E-value=43 Score=22.89 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=24.9
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeE
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEI 90 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~ev 90 (131)
-.||+.++.+-.+.++....|++.+||+..
T Consensus 29 klViiA~D~~~~~~~~i~~~c~~~~Vp~~~ 58 (82)
T PRK13602 29 KEVVVAEDADPRLTEKVEALANEKGVPVSK 58 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 456777777778999999999999999843
No 345
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=48.24 E-value=46 Score=21.62 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=27.1
Q ss_pred eEEEE-eccCCCHHHHHHHHHHHHHhCCCeeEEEEcC
Q 032873 60 IVGII-MESDLDLPVMNDAARTLSDFGVPYEIKILPP 95 (131)
Q Consensus 60 ~V~Ii-mGS~SDl~~~~ka~~~L~~fGI~~ev~V~SA 95 (131)
+|.|+ .|-..+...+.++...|.+.||+.++-..|.
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s~ 39 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSE 39 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcCC
Confidence 34554 4556778899999999999999988665443
No 346
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=48.24 E-value=59 Score=27.44 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=41.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..|.|+.=+..++..+.+++..|.+.|+.+++...+ ++.++-. +++...|+.-+|.+.
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~--~~l~k~~---~~a~~~g~~~~i~ig 380 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGG--RKLKKQL---KYADKLGARFAVILG 380 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCC--CCHHHHH---HHHHHcCCCEEEEEC
Confidence 567777656788888999999999999999875542 4444444 445567776666664
No 347
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=48.24 E-value=47 Score=23.88 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCC-ChHHHHHHHH
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYAL 107 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAHR-tp~~~~~~~~ 107 (131)
.=+.|++|.+.|++-||+|+++=.-.+. +.+++.++++
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 9 GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 3468999999999999999977554444 6677777776
No 348
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=48.19 E-value=52 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=23.4
Q ss_pred EEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 91 KILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 91 ~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
.|-+..=+.+++.++++.+.++|++||+=+
T Consensus 43 ~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 43 AVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp EESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccchhhhhhhhhhccccccceEEEee
Confidence 455555567889999999999999998744
No 349
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=48.07 E-value=56 Score=26.10 Aligned_cols=48 Identities=19% Similarity=0.046 Sum_probs=32.9
Q ss_pred CChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecc--CCCHHHHHHHHHHHHHhCC
Q 032873 24 SSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMES--DLDLPVMNDAARTLSDFGV 86 (131)
Q Consensus 24 ~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS--~SDl~~~~ka~~~L~~fGI 86 (131)
-+-+++++++.|.++++... .=|-=-||| ++|.+.|+...+.|++-|.
T Consensus 71 ~~~~~i~~~l~~al~~vp~a---------------~GvnNhmGS~~T~~~~~m~~vl~~l~~~gl 120 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGA---------------VGVNNHMGSRFTSDREAMRWVLEVLKERGL 120 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT----------------SEEEEEE-CCHHC-HHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHCCCc---------------EEEecCCCccccCCHHHHHHHHHHHHHcCC
Confidence 34669999999998666553 124445897 5999999999888887776
No 350
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.86 E-value=24 Score=29.89 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=24.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
.+|+..|.....+.++.+ .++++|+++|...-+
T Consensus 189 atVtv~hs~T~~l~~~~~-----~ADIvv~AvG~p~~i 221 (287)
T PRK14176 189 ATVSVCHVFTDDLKKYTL-----DADILVVATGVKHLI 221 (287)
T ss_pred CEEEEEeccCCCHHHHHh-----hCCEEEEccCCcccc
Confidence 567778876666777664 369999999986544
No 351
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=47.77 E-value=76 Score=26.62 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=40.4
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEE
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~Vi 117 (131)
+.|....++.+.++.+.|++.|+++.+.++---.+.+++.++++.+.+.|++.+
T Consensus 133 irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~i 186 (378)
T PRK05301 133 LAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADRL 186 (378)
T ss_pred HcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCEE
Confidence 345544577777888899999999887766444567888888888888888654
No 352
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.77 E-value=1.3e+02 Score=25.47 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=43.2
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC--------hHHHHHHHHHHhhCCCeEEEE
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN--------CKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt--------p~~~~~~~~~~~~~g~~ViIA 119 (131)
.+|-|-..+.+.+++.++.++.+++ .+.++..|.. .+++.+|.+..++.|+.|.|-
T Consensus 257 vlI~g~NDs~ed~~~La~llk~~~~--~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr 320 (343)
T PRK14469 257 ILIKGFNDEIEDAKKLAELLKGLKV--FVNLIPVNPTVPGLEKPSRERIERFKEILLKNGIEAEIR 320 (343)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCc--EEEEEecCCCCccCCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 3555655558899999999998764 6788888863 467778888888889999885
No 353
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=47.59 E-value=1.2e+02 Score=24.29 Aligned_cols=70 Identities=13% Similarity=0.240 Sum_probs=53.9
Q ss_pred CeEEEEeccCCC--HHHHHH-HHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 59 PIVGIIMESDLD--LPVMND-AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 59 ~~V~IimGS~SD--l~~~~k-a~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
..|++++...+| +..|.+ +.+..+++|+...+....+...+.+-.+-++.+-.++++.||..+.-+..+.
T Consensus 34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~ 106 (322)
T COG1879 34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALT 106 (322)
T ss_pred ceEEEEeccCCChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhH
Confidence 479999998888 343444 5666688998778888888888888888887777889999998877665543
No 354
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=47.56 E-value=59 Score=22.70 Aligned_cols=44 Identities=9% Similarity=-0.124 Sum_probs=32.2
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHH
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~ 109 (131)
+.||..=...++.+..+|+..||+|+-.=++. .|+...++.+..
T Consensus 9 ~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~--d~~~r~em~~~~ 52 (92)
T cd03030 9 SSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM--NEENRQWMRENV 52 (92)
T ss_pred ccccHHHHHHHHHHHHHHHHCCCceEEEecCC--CHHHHHHHHHhc
Confidence 34555556778888999999999999777765 566666666544
No 355
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=47.46 E-value=1.3e+02 Score=23.53 Aligned_cols=64 Identities=6% Similarity=0.024 Sum_probs=38.5
Q ss_pred CeEEEEeccCCCH--HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 59 PIVGIIMESDLDL--PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 59 ~~V~IimGS~SDl--~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
.+|++|..+.+|. ..++...+.|++.|+.......-. .....+...++.....+.++||..+..
T Consensus 136 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~~d~~~~~~~~~~~~~d~i~~~~~~ 201 (334)
T cd06347 136 KKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFN-AGDTDFSAQLTKIKAKNPDVIFLPGYY 201 (334)
T ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEEec-CCCCcHHHHHHHHHhcCCCEEEEcCch
Confidence 4799998765443 344556677788887543222212 233446666666667778777766544
No 356
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=47.36 E-value=89 Score=26.14 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc---------------------CCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILP---------------------PHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~S---------------------AHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
....+.++++-+++.|||+++-++- .+|-|+ ..++++..+++|++|++-+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYI 91 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEe
Confidence 5566788888889999999977652 224454 5677788888999887654
No 357
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=47.35 E-value=64 Score=26.83 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=40.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEE
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~Vi 117 (131)
+....++.+.++.+.|.+.|+++.++++--.-+.+++.++++.+.+.|++.+
T Consensus 138 ~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~~~n~~~l~~i~~~~~~~g~~~~ 189 (370)
T PRK13758 138 CGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKIYKYFKEKDFKFL 189 (370)
T ss_pred CCCccHHHHHHHHHHHHHhCCCceEEEEeccccccCHHHHHHHHHHcCCCeE
Confidence 3456688888888999999999988776555567778888877778888644
No 358
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=47.19 E-value=1.4e+02 Score=27.63 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=50.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CChHHHHHHHHHHhhCCCeEEEEecCcCCc
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAH---Rtp~~~~~~~~~~~~~g~~ViIA~AG~aAh 126 (131)
.+.-|.=+-||..-++.+.+..++.|..++..++-.. -+++.+.++++.+.+.|++. |+++-+++.
T Consensus 106 d~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~-I~i~Dt~G~ 174 (582)
T TIGR01108 106 DVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDS-ICIKDMAGI 174 (582)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE-EEECCCCCC
Confidence 4555666789999999999999999998877654332 25699999999888888874 566655544
No 359
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=47.16 E-value=41 Score=21.38 Aligned_cols=24 Identities=38% Similarity=0.750 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcC
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPP 95 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SA 95 (131)
|.+.++.-.|+.+|+++++.++-.
T Consensus 3 P~a~Rv~i~l~~~gl~~~~~~v~~ 26 (70)
T PF13409_consen 3 PFAHRVRIALEEKGLPYEIKVVPL 26 (70)
T ss_dssp HHHHHHHHHHHHHTGTCEEEEEET
T ss_pred hHhHHHHHHHHHhCCCCEEEEEee
Confidence 567889999999999999998844
No 360
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=47.15 E-value=27 Score=22.10 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCeeEEEE
Q 032873 72 PVMNDAARTLSDFGVPYEIKIL 93 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~ 93 (131)
+.|.++...|++.||+|+..-.
T Consensus 11 p~c~kv~~~L~~~gi~y~~~~~ 32 (77)
T cd03040 11 PFCCKVRAFLDYHGIPYEVVEV 32 (77)
T ss_pred HHHHHHHHHHHHCCCceEEEEC
Confidence 8899999999999999998654
No 361
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=47.13 E-value=66 Score=24.63 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEc-C-----------CCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILP-P-----------HQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~S-A-----------HRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
=.+.+.+...+.|++.|+.+.+.-.. . .+..+.+.+=++.+.+.++++||.+=-
T Consensus 27 ~~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~ 92 (189)
T TIGR02883 27 ITLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHL 92 (189)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEec
Confidence 34678889999999999877655332 1 122234555556666788999998743
No 362
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=47.11 E-value=49 Score=23.21 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~ 106 (131)
.+=+.++++.-+|.+-||+|++.-+.....|+.+.++-
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~n 57 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLA 57 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhC
Confidence 44589999999999999999998888888887766553
No 363
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=47.01 E-value=1.1e+02 Score=26.23 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=44.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------hHHHHHHHHHHhhCCCeEEEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt---------p~~~~~~~~~~~~~g~~ViIA 119 (131)
...+|-|=..+.+.+++.++.|+.++ +.+.++-.|.. ++++.+|.+...+.|+.|.|-
T Consensus 262 eyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR 328 (355)
T TIGR00048 262 EYVLLDGVNDQVEHAEELAELLKGTK--CKVNLIPWNPFPEADYERPSNEQIDRFAKTLMSYGFTVTIR 328 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC--CceEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 35667777777899999999999876 46666766653 367778888888899999884
No 364
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=46.94 E-value=1.1e+02 Score=22.34 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=38.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~Vi 117 (131)
.+.++.-+..++..+++..+.|+++|++.-+-+.-+...+....++.+..++.|+.++
T Consensus 118 vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 118 ALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDEIAEEIEDYCEEEGIPIL 175 (179)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCeE
Confidence 4556667778899999999999999998755444444444333444444455566654
No 365
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=46.93 E-value=39 Score=28.49 Aligned_cols=59 Identities=20% Similarity=0.468 Sum_probs=46.5
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHH-------hCCCee-------------EEEEcCCCChHHHHHHHHHHhhCCCeE
Q 032873 58 APIVGIIMESDLDLPVMNDAARTLSD-------FGVPYE-------------IKILPPHQNCKEALSYALSAKERGIKI 116 (131)
Q Consensus 58 ~~~V~IimGS~SDl~~~~ka~~~L~~-------fGI~~e-------------v~V~SAHRtp~~~~~~~~~~~~~g~~V 116 (131)
...|.-+|+++-|++.-.++.+.|.+ +|+||. .|-.-..-++++..++++..++.+.++
T Consensus 17 ~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~ 95 (265)
T COG0159 17 GALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKV 95 (265)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCC
Confidence 36899999999999999999999875 666654 344445678899999998887666653
No 366
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.89 E-value=99 Score=21.69 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=42.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhC-CCee--------------------EEEEcCC-CChHHHHHHHHHHhhCCCeEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFG-VPYE--------------------IKILPPH-QNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fG-I~~e--------------------v~V~SAH-Rtp~~~~~~~~~~~~~g~~Vi 117 (131)
+-..+.|+-+.+.++++.+-.|.+.+ ++++ +-++|.. ++-+++.+.++.+++.|.+++
T Consensus 14 ~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi 93 (153)
T cd05009 14 KSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESLIKEVKARGAKVI 93 (153)
T ss_pred CcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHHHHHHHHcCCEEE
Confidence 45688999999999999888888775 6533 3344422 445667888888888887666
Q ss_pred EE
Q 032873 118 IV 119 (131)
Q Consensus 118 IA 119 (131)
.-
T Consensus 94 ~i 95 (153)
T cd05009 94 VI 95 (153)
T ss_pred EE
Confidence 44
No 367
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=46.78 E-value=42 Score=23.05 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhC--CCeEEEEecCc
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGV 123 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~--g~~ViIA~AG~ 123 (131)
-++.++|++.||++++.-++ +.++... ++++||+.+-.
T Consensus 5 mkIk~~L~e~Gi~~~ve~~d-----------iss~~~~~~~aDiiVtt~~l 44 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCA-----------VGEYKSELSGADIIIASTHI 44 (85)
T ss_pred HHHHHHHHHcCCCeEEEEee-----------hhhcccCCCCCCEEEECccc
Confidence 36788999999998865443 1222233 45777776443
No 368
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=46.77 E-value=1e+02 Score=25.57 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHhCC-CeeEEEE-cCCCChHHHHHHHHHHhhCCCeEE
Q 032873 69 LDLPVMNDAARTLSDFGV-PYEIKIL-PPHQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI-~~ev~V~-SAHRtp~~~~~~~~~~~~~g~~Vi 117 (131)
.+++.+.+..+.+.+.|+ ++.+..+ ..-.+.+++.++++.+.+.|+.+.
T Consensus 137 g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 137 GRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEE
Confidence 568888888889999999 7777644 334688999999999999888764
No 369
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=46.68 E-value=39 Score=24.76 Aligned_cols=41 Identities=10% Similarity=0.051 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEc-CCCChHHHHHHHHHH
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSA 109 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~S-AHRtp~~~~~~~~~~ 109 (131)
+.=+.|++|.+.|++.||+|+.+=+. -.-+.+++.++++..
T Consensus 8 ~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 8 PSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred CCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 34478999999999999999876554 333456666666543
No 370
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=46.63 E-value=90 Score=21.12 Aligned_cols=58 Identities=28% Similarity=0.202 Sum_probs=42.6
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCee--------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEE
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~e--------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViI 118 (131)
-.++.|+..=+..++.....|..+|.+.. +-++|.-+.+..+.+.++.++.+|++++.
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 34666777777888888888888886533 45667777777888888888888877644
No 371
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=46.62 E-value=1.2e+02 Score=23.96 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=33.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.+|+||.-++.-...++...+.+++.|+....... ....+.+..++...++.+.++||...
T Consensus 128 ~~vaii~~~~~~~~~l~~~~~~~~~~g~~v~~~~~--~~~~~d~~~~l~~i~~~~~d~Vi~~~ 188 (324)
T cd06368 128 RKFVYIYDSDEGLLRLQELLDALSPKGIQVTVRRL--DDDTDMYRPLLKEIKREKERRIILDC 188 (324)
T ss_pred CEEEEEECCcHhHHHHHHHHHhhccCCceEEEEEe--cCCchHHHHHHHHHhhccCceEEEEC
Confidence 36777764433333445555555666666554432 22223466677677777777776543
No 372
>PLN02530 histidine-tRNA ligase
Probab=46.60 E-value=71 Score=28.34 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=39.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
..|.|+.-+...+..+.+++..|.+-|+.+++...+ +..++. +++|...|++.+|.+
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~--~~l~k~---ik~A~k~g~~~ivii 458 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEP--KKLKWV---FKHAERIGAKRLVLV 458 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCC--CCHHHH---HHHHHHCCCCEEEEE
Confidence 457777766677888899999999999998876543 344444 445556677544443
No 373
>PF02557 VanY: D-alanyl-D-alanine carboxypeptidase; InterPro: IPR003709 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These proteins are metallopeptidases belonging to MEROPS peptidase family M15 (clan MD), subfamily M15B (vanY D-Ala-D-Ala carboxypeptidase) and M15C (Ply, L-alanyl-D-glutamate peptidase). Acquired VanA- and VanB-type glycopeptide resistance in enterococci is due to synthesis of modified peptidoglycan precursors terminating in D-lactate. As opposed to VanA-type strains which are resistant to both vancomycin and teicoplanin, VanB-type strains remain teicoplanin susceptible []. The vanY gene was necessary for synthesis of the vancomycin-inducible D,D-carboxypeptidase 3.4.16.4 from EC activity previously proposed to be responsible for glycopeptide resistance. However, this activity was not required for peptidoglycan synthesis in the presence of glycopeptides []. Bacteriophage lysins (Ply) or endolysins are phage-encoded cell wall lytic enzymes which are synthesised late during virus multiplication and mediate the release of progeny virions. Bacteriophages of the pathogen Listeria monocytogenes encode endolysin enzymes which specifically hydrolyse the cross-linking peptide bridges in Listeria peptidoglycan. Ply118 is a 30.8kDa L-alanoyl-D-glutamate peptidase and Ply511 (36.5 kDa) acts as N-acetylmuramoyl-L-alanine amidase (IPR002502 from INTERPRO). ; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4F78_A 2VO9_C.
Probab=46.50 E-value=4.1 Score=29.62 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=27.6
Q ss_pred HhCCCeeEEEEcCCCChHHHHHHHH-HHhh---CCCeEEEEecCcCCcCcCC
Q 032873 83 DFGVPYEIKILPPHQNCKEALSYAL-SAKE---RGIKIIIVGDGVEAHLSGT 130 (131)
Q Consensus 83 ~fGI~~ev~V~SAHRtp~~~~~~~~-~~~~---~g~~ViIA~AG~aAhLpGv 130 (131)
.-|+ .+.|+|+.|++++=.++-+ .+.. .+.....|..|-|.|--|.
T Consensus 21 ~~G~--~l~i~SgyRs~~~Q~~ly~~~~~~~~~~~~~~~~a~pG~SeH~~Gl 70 (132)
T PF02557_consen 21 AEGI--NLKITSGYRSYEEQQQLYDKYAQEYGKAGARVYVAPPGYSEHQTGL 70 (132)
T ss_dssp TTTT--SEEEEE----HHHHHHHHHHHHCCCSCCCHHHHS--TTSSGGGGT-
T ss_pred hcCC--CEEEEeecCCHHHHHHHHHHHHHhhhHhhhheecCCCCCCccccee
Confidence 4566 7889999999999888662 2222 3447888999999987663
No 374
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=46.43 E-value=88 Score=25.88 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCeeEEEE---cCCC-ChHHHHHHHHHHhhCCCeEE
Q 032873 76 DAARTLSDFGVPYEIKIL---PPHQ-NCKEALSYALSAKERGIKII 117 (131)
Q Consensus 76 ka~~~L~~fGI~~ev~V~---SAHR-tp~~~~~~~~~~~~~g~~Vi 117 (131)
++.+.+++.|..+.+.+. +++| .|+.+.++++.+.+-|++.|
T Consensus 119 ~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i 164 (280)
T cd07945 119 EVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRI 164 (280)
T ss_pred HHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEE
Confidence 345666778887776666 3557 48999999988888888754
No 375
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=46.41 E-value=1.1e+02 Score=26.20 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEE
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKII 117 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~Vi 117 (131)
+.+.++.+.+++.|..+.+....+.|+ |+.+.++++.+.+-|++.|
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i 158 (363)
T TIGR02090 112 EKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRI 158 (363)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEE
Confidence 556677778888999888887777776 6788888888888787653
No 376
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=46.40 E-value=1.2e+02 Score=25.11 Aligned_cols=90 Identities=4% Similarity=0.065 Sum_probs=58.0
Q ss_pred HHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHH
Q 032873 28 SATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (131)
Q Consensus 28 ~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~ 104 (131)
+-+++....++++..........+. ..+...|++++-+-++ .++++.+.+.|++.|. .+-++..+..|++..+
T Consensus 30 eTr~kV~~a~~elgY~pN~~Ar~L~--~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy--~~~l~~~~~~~~~e~~ 105 (333)
T COG1609 30 ETREKVLAAIKELGYRPNAVARSLR--TGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGY--SLLLANTDDDPEKERE 105 (333)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHH--hCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHH
Confidence 4455555566666654111110001 2234689999987766 4455666667777765 7778888889999999
Q ss_pred HHHHHhhCCCeEEEEec
Q 032873 105 YALSAKERGIKIIIVGD 121 (131)
Q Consensus 105 ~~~~~~~~g~~ViIA~A 121 (131)
+++....++++=+|...
T Consensus 106 ~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 106 YLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 99888888886666554
No 377
>PRK10638 glutaredoxin 3; Provisional
Probab=46.38 E-value=81 Score=20.56 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHH
Q 032873 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108 (131)
Q Consensus 68 ~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~ 108 (131)
.+.=+.|.++...|++.||+|+..=+. ..++...++.+.
T Consensus 9 ~~~Cp~C~~a~~~L~~~gi~y~~~dv~--~~~~~~~~l~~~ 47 (83)
T PRK10638 9 KATCPFCHRAKALLNSKGVSFQEIPID--GDAAKREEMIKR 47 (83)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEECC--CCHHHHHHHHHH
Confidence 344589999999999999999876554 344444555543
No 378
>PTZ00062 glutaredoxin; Provisional
Probab=46.37 E-value=1.3e+02 Score=23.95 Aligned_cols=101 Identities=9% Similarity=-0.016 Sum_probs=53.5
Q ss_pred ceeecce---eeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccC---CCHHHHHHHHHHHHHhCC
Q 032873 13 TVSRGTI---PVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESD---LDLPVMNDAARTLSDFGV 86 (131)
Q Consensus 13 qvyrghi---tVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~---SDl~~~~ka~~~L~~fGI 86 (131)
.+|++.. .+.+.+..++...+++...-...-....-. ...-.. ..|.++|=|+ +.=+.|+++.+.|++.||
T Consensus 67 v~~~~g~~i~r~~G~~~~~~~~~~~~~~~~~~~~~~~~~v--~~li~~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i 143 (204)
T PTZ00062 67 EFYQNSQLINSLEGCNTSTLVSFIRGWAQKGSSEDTVEKI--ERLIRN-HKILLFMKGSKTFPFCRFSNAVVNMLNSSGV 143 (204)
T ss_pred EEEECCEEEeeeeCCCHHHHHHHHHHHcCCCCHHHHHHHH--HHHHhc-CCEEEEEccCCCCCCChhHHHHHHHHHHcCC
Confidence 3455543 445667777777776654311100000000 000112 3577777643 477888899999999999
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH-hhCC-CeEEEE
Q 032873 87 PYEIKILPPHQNCKEALSYALSA-KERG-IKIIIV 119 (131)
Q Consensus 87 ~~ev~V~SAHRtp~~~~~~~~~~-~~~g-~~ViIA 119 (131)
+|+..=+. ..++ ..+.+++. ..+. ..|||-
T Consensus 144 ~y~~~DI~--~d~~-~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 144 KYETYNIF--EDPD-LREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred CEEEEEcC--CCHH-HHHHHHHHhCCCCCCeEEEC
Confidence 99855444 3343 34444322 2222 367764
No 379
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=46.34 E-value=1.6e+02 Score=24.54 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=37.7
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCC-CeEEEEe
Q 032873 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIVG 120 (131)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g-~~ViIA~ 120 (131)
.+|+||.-++. ....++...+.|++.|+....... .=...+.+...++..++.+ .+|||.+
T Consensus 133 ~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~~~~~d~~~~L~~lk~~~~~~viv~~ 195 (382)
T cd06371 133 AHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTS-MGPDEKGAREALKKVRSADRVRVVIMC 195 (382)
T ss_pred eEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEE-ecCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 36788755433 234677777888888887554322 1134566777777776665 5777754
No 380
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=46.31 E-value=1.1e+02 Score=21.84 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=32.7
Q ss_pred eEEEEeccCCCHH----HHHHHHHHHHHhCCCeeEEEEcCCC---------------ChHHHHHHHHHHhhC
Q 032873 60 IVGIIMESDLDLP----VMNDAARTLSDFGVPYEIKILPPHQ---------------NCKEALSYALSAKER 112 (131)
Q Consensus 60 ~V~IimGS~SDl~----~~~ka~~~L~~fGI~~ev~V~SAHR---------------tp~~~~~~~~~~~~~ 112 (131)
+|.||.||...-. .++.+.+.|++.| +|++++..+. .++.+.++.+...+-
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~a 71 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEA 71 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHS
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecC
Confidence 6999999985333 4445555555565 5666666665 356677777666553
No 381
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=46.16 E-value=2.1e+02 Score=25.19 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=58.7
Q ss_pred ecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---
Q 032873 22 LASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN--- 98 (131)
Q Consensus 22 t~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt--- 98 (131)
....+.++...|+.+.+.|..-.-+.+..-.+.|.-+.+|+||++.++. ..+.+..++++=.-.+++.+..+.=.
T Consensus 93 ~~~G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a--a~~D~~~~~~~r~p~~~~~~~~~~vQG~~ 170 (432)
T TIGR00237 93 QPAGEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGA--ALADILHILKRRDPSLKVVIYPTLVQGEG 170 (432)
T ss_pred ccCChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccH--HHHHHHHHHHhhCCCceEEEecccccCcc
Confidence 3445778888888887666433224333223334444589999998775 45666777765332356666665543
Q ss_pred -hHHHHHHHHHHhh-CCCeEEEEecCc
Q 032873 99 -CKEALSYALSAKE-RGIKIIIVGDGV 123 (131)
Q Consensus 99 -p~~~~~~~~~~~~-~g~~ViIA~AG~ 123 (131)
+..+.+-++.+.. .+++|||.+=|+
T Consensus 171 a~~~i~~al~~~~~~~~~dviii~RGG 197 (432)
T TIGR00237 171 AVQSIVESIELANTKNECDVLIVGRGG 197 (432)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEecCC
Confidence 3343443344443 347888887765
No 382
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=46.14 E-value=61 Score=23.01 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
+...+.+++.+|. ++-|+-.....+++.++++.+++.|++|.+.
T Consensus 131 ~~l~~~~~~~~id-~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 131 DDLPELVREHDID-EVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGHHHHHHHHT---EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHhCCCC-EEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 3445677788887 7777777777889999999999999988763
No 383
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=46.01 E-value=70 Score=19.68 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=32.8
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHH-hhCCCeEEE
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA-KERGIKIII 118 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~-~~~g~~ViI 118 (131)
+.|+ +.=+.|.++...|++.|++|+. +...+.++....+.+.- ...++=+|+
T Consensus 4 ly~~-~~C~~C~~~~~~L~~~~~~~~~--idi~~~~~~~~~~~~~~~~~~~vP~i~ 56 (77)
T TIGR02200 4 VYGT-TWCGYCAQLMRTLDKLGAAYEW--VDIEEDEGAADRVVSVNNGNMTVPTVK 56 (77)
T ss_pred EEEC-CCChhHHHHHHHHHHcCCceEE--EeCcCCHhHHHHHHHHhCCCceeCEEE
Confidence 4444 3447899999999999999874 44566666555444321 334455554
No 384
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.97 E-value=1.1e+02 Score=25.90 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEE
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKIL 93 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~ 93 (131)
-+...+++.++-+++.|||+++-++
T Consensus 21 ~~~~ev~~v~~~~~~~~iP~d~i~l 45 (340)
T cd06597 21 DTQAEVMRQMDAHEEHGIPVTVVVI 45 (340)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEE
Confidence 3667788888899999999998766
No 385
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=45.79 E-value=84 Score=26.85 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=42.4
Q ss_pred CeEEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS~---SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..||||+|+- .-+..++...+.|++-|.++.+-++ =.=+|+++..|- .+++||-+|
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~-~~in~~kL~nf~------eiD~fV~~a 291 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILL-SNVSPAKLLMFD------QIDVFVQVA 291 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEe-CCCCHHHHhCCC------CcCEEEEec
Confidence 4799999876 4678899999999999998866655 567888887763 256665544
No 386
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=45.73 E-value=1.1e+02 Score=25.66 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=40.8
Q ss_pred cCCCHHHHHHHHH-HHHHh-CCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEE
Q 032873 67 SDLDLPVMNDAAR-TLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 67 S~SDl~~~~ka~~-~L~~f-GI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~Vi 117 (131)
|||==.+++...+ +|.+| +++++++..+.-|+.+++.++++.++....-||
T Consensus 5 SDstGeTAe~v~~A~l~QF~~~~~~~~~~p~I~~~~~~~~il~~i~~~~~iV~ 57 (255)
T PF03618_consen 5 SDSTGETAETVARAALAQFPDVEFEIHRFPFIRTEEQLDEILEEIKEENAIVF 57 (255)
T ss_pred ecCchHHHHHHHHHHHHhCCCCceEEEECCCcCCHHHHHHHHHHHhccCCEEE
Confidence 5555667777666 56889 999999999999999999999988877544444
No 387
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=45.63 E-value=1.6e+02 Score=24.16 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=38.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC--CCeeEEEE-cCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFG--VPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fG--I~~ev~V~-SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
.+|+||-.++.+...++...+.+++.| +....+-. +.- .-+.+...++..++.+.++||..
T Consensus 127 k~vaii~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~~~~~-~~~d~~~~L~~ik~~~~~~iil~ 190 (382)
T cd06380 127 RKVVYLYDSDRGLLRLQQLLDYLREKDNKWQVTARRVDNVT-DEEEFLRLLEDLDRRKEKRIVLD 190 (382)
T ss_pred eEEEEEECCCcchHHHHHHHHHHhccCCceEEEEEEecCCC-cHHHHHHHHHHhhcccceEEEEE
Confidence 479999877767777777778888888 44332211 111 12356666777777777887764
No 388
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=45.59 E-value=77 Score=22.50 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=29.5
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCh
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNC 99 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp 99 (131)
+|+|+.....++.-.-...+.|+.-| ++++++|.+..|
T Consensus 3 ~v~ill~~g~~~~e~~~~~~~~~~a~--~~v~vvs~~~~~ 40 (142)
T cd03132 3 KVGILVADGVDAAELSALKAALKAAG--ANVKVVAPTLGG 40 (142)
T ss_pred EEEEEEcCCcCHHHHHHHHHHHHHCC--CEEEEEecCcCc
Confidence 68888888787777777888887766 688888877654
No 389
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.44 E-value=1.1e+02 Score=21.58 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
+-++|-....+++.+.++.++++|++++.-.
T Consensus 51 ~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT 81 (120)
T cd05710 51 VILASHSGNTKETVAAAKFAKEKGATVIGLT 81 (120)
T ss_pred EEEEeCCCCChHHHHHHHHHHHcCCeEEEEE
Confidence 4556666667777777777777777654433
No 390
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.35 E-value=31 Score=29.12 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.+.+..+..|..+| .+|...|+..+.+.++++. ++++|++.|.+.
T Consensus 163 ~vGrpla~lL~~~~----atVtv~hs~t~~L~~~~~~-----ADIvI~Avgk~~ 207 (279)
T PRK14178 163 DVGRPMAALLLNAD----ATVTICHSKTENLKAELRQ-----ADILVSAAGKAG 207 (279)
T ss_pred cccHHHHHHHHhCC----CeeEEEecChhHHHHHHhh-----CCEEEECCCccc
Confidence 34555555665555 5677789988888777753 699999999773
No 391
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=45.34 E-value=1.2e+02 Score=23.14 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
+.+.+.++++|+. +.+...- .++...++++....++++-||..
T Consensus 21 ~gi~~~~~~~gy~--~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~ 63 (260)
T cd06304 21 EGLEKAEKELGVE--VKYVESV-EDADYEPNLRQLAAQGYDLIFGV 63 (260)
T ss_pred HHHHHHHHhcCce--EEEEecC-CHHHHHHHHHHHHHcCCCEEEEC
Confidence 3444555566643 3333222 55666666666666666644443
No 392
>PLN02837 threonine-tRNA ligase
Probab=45.09 E-value=79 Score=29.08 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=40.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..|.||--++.+.+.+.++++.|.+-|+.+++ .. . +++.+- ++++...|+..+|.+.
T Consensus 517 ~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev-~~-~-~slgkk---ir~A~~~gip~~IiIG 573 (614)
T PLN02837 517 VQARVLPVTDNELEYCKEVVAKLKAKGIRAEV-CH-G-ERLPKL---IRNAETQKIPLMAVVG 573 (614)
T ss_pred ccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-eC-C-CCHHHH---HHHHHHcCCCEEEEEc
Confidence 35777777778889999999999999999888 43 2 444444 4555577876655553
No 393
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=44.98 E-value=77 Score=22.37 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~ 106 (131)
+.=+.|++|.+.|++.||+|++.=+ .+.|....++.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi--~~~~~~~~el~ 42 (117)
T TIGR01617 7 PNCTTCKKARRWLEANGIEYQFIDI--GEDGPTREELL 42 (117)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEec--CCChhhHHHHH
Confidence 3347899999999999998874433 45554444444
No 394
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=44.97 E-value=1.6e+02 Score=24.83 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=45.0
Q ss_pred EEeccCCCHHHHHHHHH-HHHHh-CCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEE
Q 032873 63 IIMESDLDLPVMNDAAR-TLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 63 IimGS~SDl~~~~ka~~-~L~~f-GI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViI 118 (131)
|..=|||==.+++.... +|.+| |++++.+..+.-|+.+++.++++.++....-||=
T Consensus 7 i~~VSDstGeTAe~v~~A~l~QF~~~~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~~ 64 (269)
T PRK05339 7 VFLVSDSTGETAETVGRAALSQFPNVEFEEHRYPFVRTEEKADEVLEEINAERPIVFY 64 (269)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCCeeEEEeCCcCCHHHHHHHHHHHHhcCCEEEE
Confidence 55557787888888777 56889 6899999999999999999999888765554543
No 395
>PRK12559 transcriptional regulator Spx; Provisional
Probab=44.89 E-value=67 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc-CCCChHHHHHHHHH
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALS 108 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~S-AHRtp~~~~~~~~~ 108 (131)
-=+.|++|.+.|++.||+|+.+-+. ---+.+++.++++.
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 9 SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 3478999999999999999977554 45566777777754
No 396
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=44.63 E-value=66 Score=24.75 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=44.3
Q ss_pred CCCeEEEEeccCCCH---HHHHHHHHHHHHhCCC-ee---EEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVP-YE---IKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 57 ~~~~V~IimGS~SDl---~~~~ka~~~L~~fGI~-~e---v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
...+|+|+.+.-.+. .-.+.|.+.|+++|++ .+ ++|-+|---|--...+++ .+.++.+||..
T Consensus 11 ~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~---~~~~DavIalG 79 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAE---SGKYDAVIALG 79 (154)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHH---cCCCCEEEEEe
Confidence 346999999998888 7788999999999975 22 445556555655555543 35588888753
No 397
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=44.53 E-value=1.4e+02 Score=22.76 Aligned_cols=41 Identities=17% Similarity=0.056 Sum_probs=22.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHH
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 105 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~ 105 (131)
.++++|+|..+ .+...+++.|-+-|. +|+...|.++++.+.
T Consensus 9 ~k~~lItGas~--giG~~ia~~L~~~G~----~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 9 GKNILITGSAQ--GIGFLLATGLAEYGA----EIIINDITAERAELA 49 (254)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHcCC----EEEEEcCCHHHHHHH
Confidence 46778888776 344555555555553 233344555444433
No 398
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.38 E-value=30 Score=28.95 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=36.1
Q ss_pred eEEEE--eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH-HHHhhCCCeEEEEecC
Q 032873 60 IVGII--MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDG 122 (131)
Q Consensus 60 ~V~Ii--mGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~-~~~~~~g~~ViIA~AG 122 (131)
+|+|+ .++....+..+++.+.|++.|+.+.+.-..+...+.....+. .....++++++|++-|
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GG 71 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGG 71 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeC
Confidence 58888 566666677889999999999877664322211111000111 1112345778877655
No 399
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=44.19 E-value=1.3e+02 Score=24.52 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=43.7
Q ss_pred eEEEEeccCC-C-HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 60 IVGIIMESDL-D-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 60 ~V~IimGS~S-D-l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
.|.|--+..+ - .....-+..+++++|++.-.+++.--|+...+...+..+..-|++=|.+..|-.
T Consensus 43 ~vsVTd~~~~~~~~~s~~~a~~l~~~~g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~ 109 (287)
T PF02219_consen 43 FVSVTDNPGGSSRMMSLLAAAKLLKETGIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDP 109 (287)
T ss_dssp EEEE---GCGTTHHHHHHHHHHHHHHTT--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-T
T ss_pred EEEeecCCCCcccCCcHHHHHHHHHHhCCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCC
Confidence 3545433332 2 333444555667899999999999999999999999889999999999999853
No 400
>PRK07109 short chain dehydrogenase; Provisional
Probab=44.04 E-value=1.8e+02 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=14.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFG 85 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fG 85 (131)
.++.+|+|..| -+...+++.|-+-|
T Consensus 8 ~k~vlITGas~--gIG~~la~~la~~G 32 (334)
T PRK07109 8 RQVVVITGASA--GVGRATARAFARRG 32 (334)
T ss_pred CCEEEEECCCC--HHHHHHHHHHHHCC
Confidence 35666777665 34455555555555
No 401
>PRK15482 transcriptional regulator MurR; Provisional
Probab=44.04 E-value=1.7e+02 Score=23.53 Aligned_cols=60 Identities=18% Similarity=0.095 Sum_probs=44.9
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCee--------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~e--------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..|.|..+-...++....-|..+|.++. +-++|..+...++.+.++.++++|++++.--.
T Consensus 138 I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~ 217 (285)
T PRK15482 138 IQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITS 217 (285)
T ss_pred eEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4566666668899998888888887543 45677777888888999889899887554433
No 402
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.93 E-value=1.4e+02 Score=22.58 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
....+.+.+.++++|..+.+... ....+...++.+...+++++.||...
T Consensus 18 ~~~~~~i~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~ 66 (268)
T cd06277 18 SEIYRAIEEEAKKYGYNLILKFV--SDEDEEEFELPSFLEDGKVDGIILLG 66 (268)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeC--CCChHHHHHHHHHHHHCCCCEEEEeC
Confidence 34455566666667654443332 23334444455444455566666543
No 403
>PRK09701 D-allose transporter subunit; Provisional
Probab=43.86 E-value=1.7e+02 Score=23.42 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=38.8
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 59 ~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
..|+++....+| ....+.+.+.+++.|+.+.+.....-..++...++++....++++.||..+.
T Consensus 25 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 25 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 478888876665 2334555666777776554432222235566667776666777877766543
No 404
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.84 E-value=1.3e+02 Score=25.76 Aligned_cols=58 Identities=10% Similarity=0.213 Sum_probs=43.2
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------hHHHHHHHHHHhhCCCeEEEEec
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt---------p~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.+|=|=..+.+.+++.++.++.++ +.+.++-.|.. ++++.+|.+...+.|+.|.|--.
T Consensus 268 ~lI~gvNDs~ed~~~La~ll~~l~--~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~ 334 (356)
T PRK14455 268 ILLGGVNDQVEHAEELADLLKGIK--CHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRRE 334 (356)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCC--CcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 344455555799999999999886 56777776653 46788888888899999988543
No 405
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.59 E-value=1.4e+02 Score=22.55 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=40.5
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCee-EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 58 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 58 ~~~V~IimGS~SD---l~~~~ka~~~L~~fGI~~e-v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
..+|+++.|.... ..-.+.-.+.|++.|+++. ..+...+.+.+...+.++..-..++++||+....
T Consensus 122 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~ 191 (273)
T cd06292 122 HRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARGMFSVEGGQAAAVELLGSGPTAIVAASDL 191 (273)
T ss_pred CceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeCCCCHHHHHHHHHHHhcCCCCEEEEcCcH
Confidence 3578888875322 2345556678888898753 3455556666665555544333348888887653
No 406
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=43.48 E-value=50 Score=25.55 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH-HHHhhCCCeEEEE
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIV 119 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~-~~~~~~g~~ViIA 119 (131)
|.+.-+.+.++|+++. .+-|.+++..|++..-.+ ++.-..|++||=.
T Consensus 2 ~~~~~~~i~~iL~~~K---~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPV 49 (140)
T COG1832 2 DNPEEEDIAEILKSAK---TIAVVGASDKPDRPSYRVAKYLQQKGYRVIPV 49 (140)
T ss_pred CCccHHHHHHHHHhCc---eEEEEecCCCCCccHHHHHHHHHHCCCEEEee
Confidence 3445567778888776 578888999999887766 7778899998843
No 407
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.15 E-value=1.5e+02 Score=25.39 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=46.5
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC---------ChHHHHHHHHHHhhCCCeEEEE
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------NCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHR---------tp~~~~~~~~~~~~~g~~ViIA 119 (131)
.+|=|=..+.+.+++.++.|+.+ ++.+.++..|. +++++.+|.+...+.|+.|.|-
T Consensus 257 ~LI~gvNDs~eda~~La~llk~l--~~~VnLiPyn~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR 321 (342)
T PRK14454 257 ALVKGVNDSKEDAKELGKLLKGM--LCHVNLIPVNEVKENGFKKSSKEKIKKFKNILKKNGIETTIR 321 (342)
T ss_pred EeECCCCCCHHHHHHHHHHHhcC--CceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 37778777899999999999876 56888888887 3678888888888899999885
No 408
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=43.13 E-value=40 Score=27.98 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=24.5
Q ss_pred CeEEEEeccCCC-----HHHHHHHHHHHHHhCCCee
Q 032873 59 PIVGIIMESDLD-----LPVMNDAARTLSDFGVPYE 89 (131)
Q Consensus 59 ~~V~IimGS~SD-----l~~~~ka~~~L~~fGI~~e 89 (131)
.+|+|++|+.|+ +...+.+.+.|++.|....
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 479999999999 4566788888888776544
No 409
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=43.08 E-value=92 Score=21.02 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
..++++.+.++++++++. +...+ .| ...+.+.+++.+++.+|.++-+-+.+.
T Consensus 49 ~~l~~~~~~~~~~~~~~~--~~~~~-~~--~~~I~~~~~~~~~dllviG~~~~~~~~ 100 (124)
T cd01987 49 RRLAEALRLAEELGAEVV--TLPGD-DV--AEAIVEFAREHNVTQIVVGKSRRSRWR 100 (124)
T ss_pred HHHHHHHHHHHHcCCEEE--EEeCC-cH--HHHHHHHHHHcCCCEEEeCCCCCchHH
Confidence 456667777788888643 33222 23 233445555777888888887665543
No 410
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=42.80 E-value=1.6e+02 Score=24.81 Aligned_cols=59 Identities=7% Similarity=0.004 Sum_probs=41.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeE-EEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev-~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
.+|+||--++.|+...+...+.+++.|+.... ++.... .+.....++..++.+.++||.
T Consensus 125 k~vaiiYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~--~~d~~~~L~~ik~~~~~~iil 184 (371)
T cd06388 125 NRFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFN--DASYRRLLEDLDRRQEKKFVI 184 (371)
T ss_pred eEEEEEecCCccHHHHHHHHHhhHhcCCeeeeEEeccCC--cHHHHHHHHHhcccccEEEEE
Confidence 47999998888899988888888888976543 333332 345666667776667766664
No 411
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.68 E-value=33 Score=29.05 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
+.++.+..|.+-|.....+|+..|.....+.++.+. .+++|+++|...-++
T Consensus 165 VGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~-----ADIvV~AvG~p~~i~ 215 (287)
T PRK14181 165 VGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKT-----ADIIIAAIGVPLFIK 215 (287)
T ss_pred chHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 566666666655432345777889766677777653 699999999886543
No 412
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=42.59 E-value=1.9e+02 Score=26.77 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=51.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCChHHHHHHHHHHhhCCCeEEEEecCcCCc
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~S---AHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAh 126 (131)
..+.-|.-+-||..-++.+.+..++.|..++..++- +--+++...++++.+.+.|++. |+++-+++.
T Consensus 110 vd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~-I~i~Dt~G~ 179 (592)
T PRK09282 110 IDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDS-ICIKDMAGL 179 (592)
T ss_pred CCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE-EEECCcCCC
Confidence 356677778899999999999999999988866642 2235799999999998889875 566655543
No 413
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.58 E-value=1.7e+02 Score=25.15 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=47.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC---------ChHHHHHHHHHHhhCCCeEEEEe
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------NCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHR---------tp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
...+|=|=..+.+.+++.++.|+.++ +.+.++..|. +++++.+|.+...+.|+.|.|--
T Consensus 259 ey~LIpGvNDs~e~a~~La~~l~~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~ 326 (345)
T PRK14457 259 EYILLGGVNDLPEHAEELANLLRGFQ--SHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRA 326 (345)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcCC--CeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 46777888888999999999999875 5788888886 35667778888888899998753
No 414
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=42.57 E-value=89 Score=24.83 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
|-+.+.+..+.|.++|.++++.+- .+.. ..+.++++.. +.+|+|+=.|.
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~-~~~l-~~l~~l~~~~---~l~ivldH~G~ 156 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFD-AVDL-PALLPFLQKL---PVAVVIDHFGR 156 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeC-HhhH-HHHHHHHHHC---CCCEEEECCCC
Confidence 778889999999999999999874 3333 3455565544 68999988885
No 415
>PRK11175 universal stress protein UspE; Provisional
Probab=42.45 E-value=1.1e+02 Score=24.26 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcC
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+++.+.+...|++++..+.--++..+.+ .+.+.+.+++.||.++-+...+
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~g~~~~~i---~~~a~~~~~DLiV~G~~~~~~~ 121 (305)
T PRK11175 72 REQAKPYLDAGIPIEIKVVWHNRPFEAI---IQEVIAGGHDLVVKMTHQHDKL 121 (305)
T ss_pred HHHHHHHhhcCCceEEEEecCCCcHHHH---HHHHHhcCCCEEEEeCCCCcHH
Confidence 3444444556888877666323333334 4445567899999987554433
No 416
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=42.44 E-value=1.1e+02 Score=23.90 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHH---HHHHhhCCCeEEEEec
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSY---ALSAKERGIKIIIVGD 121 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~---~~~~~~~g~~ViIA~A 121 (131)
+.+...++.+|||+.+.-++. ..+++...+ ++...++|++.++.++
T Consensus 48 e~~~~~A~~lgipl~~i~~~~-~~e~~~~~l~~~l~~~~~~g~~~vv~G~ 96 (194)
T cd01994 48 ELLELQAEAMGIPLIRIEISG-EEEDEVEDLKELLRKLKEEGVDAVVFGA 96 (194)
T ss_pred HHHHHHHHHcCCcEEEEeCCC-CchHHHHHHHHHHHHHHHcCCCEEEECc
Confidence 455566788999987555544 455555554 4444555788888765
No 417
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.40 E-value=32 Score=29.34 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=24.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCcC
Q 032873 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (131)
Q Consensus 90 v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLpG 129 (131)
.+|+..||.+..+.++++ ..+|+|++.|.+..+..
T Consensus 184 atVtv~~~~t~~l~e~~~-----~ADIVIsavg~~~~v~~ 218 (301)
T PRK14194 184 CSVTVVHSRSTDAKALCR-----QADIVVAAVGRPRLIDA 218 (301)
T ss_pred CEEEEECCCCCCHHHHHh-----cCCEEEEecCChhcccH
Confidence 455556887776666654 36999999998876543
No 418
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=42.23 E-value=1.3e+02 Score=23.01 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=38.3
Q ss_pred CCeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEEEEcCCC--ChHHHHHHHH
Q 032873 58 APIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIKILPPHQ--NCKEALSYAL 107 (131)
Q Consensus 58 ~~~V~IimGS~SD--l~~~~ka~~~L~~fGI~~ev~V~SAHR--tp~~~~~~~~ 107 (131)
.|.|+||+=.|-+ -.-.++|.+.|+.-|+. ++..+|++. +-+++.+|++
T Consensus 90 ~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~-~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 90 KPVIGVITKIDLPSDDANIERAKKWLKNAGVK-EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCEEEEEECccCccchhhHHHHHHHHHHcCCC-CeEEEECCCCcCHHHHHHHHh
Confidence 4789999977766 77889999999999998 456667665 3677777764
No 419
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=42.15 E-value=63 Score=20.27 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEc-CCCCh
Q 032873 72 PVMNDAARTLSDFGVPYEIKILP-PHQNC 99 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~S-AHRtp 99 (131)
+.+.++.-.|+..|++|+..-.. .|+.+
T Consensus 10 p~~~~v~~~l~~~gl~~~~~~~~~~~~~~ 38 (74)
T cd03058 10 PFVLRVRIALALKGVPYEYVEEDLGNKSE 38 (74)
T ss_pred chHHHHHHHHHHcCCCCEEEEeCcccCCH
Confidence 57889999999999999986554 44443
No 420
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=41.81 E-value=1.8e+02 Score=23.12 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=39.9
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCC-CChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 59 ~~V~IimGS~S-Dl~~~~ka~~~L~~fGI~~ev~V~SAH-Rtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
.+|+++...+. .....+...+.+++.|+.....+.-.- .+...+..+++..+..+.+++|....
T Consensus 161 ~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~ 226 (348)
T cd06350 161 TWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGD 226 (348)
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 36777775332 244566777788888987654333111 12456677777777777888887653
No 421
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=41.80 E-value=87 Score=26.32 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=13.5
Q ss_pred HHHhhCCCeEEEEecCcCCcC
Q 032873 107 LSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 107 ~~~~~~g~~ViIA~AG~aAhL 127 (131)
+++-++| .||||..|-+.-|
T Consensus 186 Eealkdg-nvIia~dGItGNL 205 (256)
T COG4002 186 EEALKDG-NVIIAVDGITGNL 205 (256)
T ss_pred HHHhhcC-CEEEEecCccchh
Confidence 3343455 8999999877654
No 422
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=41.76 E-value=1.2e+02 Score=23.37 Aligned_cols=45 Identities=18% Similarity=0.041 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcC---CCChHHHHHHHHHHhhCCC
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI 114 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SA---HRtp~~~~~~~~~~~~~g~ 114 (131)
|+....++.+.|++.|+++.++++-- ..+++++.++++.+.+.|.
T Consensus 141 ~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~ 188 (235)
T TIGR02493 141 SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPN 188 (235)
T ss_pred CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCC
Confidence 56667788888999999988775532 3467889999988887774
No 423
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=41.70 E-value=1.7e+02 Score=23.20 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=41.3
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCee--------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fGI~~e--------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
.++.|.-+-...++....-|-.+|+++. +-++|.-+...++.+.++.++++|++|+.--
T Consensus 131 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT 209 (284)
T PRK11302 131 ISFFGLGASAAVAHDAQNKFFRFNVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAIT 209 (284)
T ss_pred EEEEEcchHHHHHHHHHHHHHhcCCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEC
Confidence 3555655556777777766777787644 4566666778888888888888888765443
No 424
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=41.31 E-value=57 Score=19.94 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcC
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPP 95 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SA 95 (131)
+.+.++.-.|+..|++|+...+..
T Consensus 10 ~~~~~v~~~l~~~~~~~~~~~i~~ 33 (73)
T cd03056 10 GNCYKVRLLLALLGIPYEWVEVDI 33 (73)
T ss_pred ccHHHHHHHHHHcCCCcEEEEecC
Confidence 567888999999999999887764
No 425
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=41.25 E-value=1.6e+02 Score=25.13 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=32.8
Q ss_pred CeEEEEecc----------------CCCHHHHHHHHHHHHHhCCCee----EEEEcCCCChHHHHHHH
Q 032873 59 PIVGIIMES----------------DLDLPVMNDAARTLSDFGVPYE----IKILPPHQNCKEALSYA 106 (131)
Q Consensus 59 ~~V~IimGS----------------~SDl~~~~ka~~~L~~fGI~~e----v~V~SAHRtp~~~~~~~ 106 (131)
.-|++||-+ ..-...+.++.+.|.++||++- +-+--.-|.|+++..++
T Consensus 38 ~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM 105 (271)
T KOG1602|consen 38 RHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLM 105 (271)
T ss_pred ceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHH
Confidence 469999944 3456678889999999999853 22223567777765543
No 426
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=41.08 E-value=66 Score=22.94 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=25.4
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChH
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCK 100 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~ 100 (131)
|+|+.....+..-+-...++|+..| |+++++|.+..|-
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~--~~v~~vs~~~~~~ 38 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAG--IEVTTASLEKKLA 38 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCC--CEEEEEEcCCCce
Confidence 4555555555555666677777766 7888888877653
No 427
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=40.88 E-value=2e+02 Score=23.57 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=37.6
Q ss_pred CeEEEEeccCCCH--HHHHHHHHHHHHhCCCeeEEEEc---CCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 59 PIVGIIMESDLDL--PVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 59 ~~V~IimGS~SDl--~~~~ka~~~L~~fGI~~ev~V~S---AHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
.+|+||.-+ +|+ ..++...+.+++.|+...+.|.. .-+....+...++..+..+.++||..+.
T Consensus 155 ~~vaii~~~-~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~ 222 (377)
T cd06379 155 NKVILLVSD-DHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSAS 222 (377)
T ss_pred eEEEEEEEc-CcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcC
Confidence 468877554 343 35677778888888843222221 2233345556666666677888886543
No 428
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=40.81 E-value=58 Score=23.93 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEE
Q 032873 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViI 118 (131)
++..+.|++.||+|+..-...-+|-++..++......+.+|-++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~~~~~~~Ktlv 45 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLF 45 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhccCCCceEEEEE
Confidence 45778899999999986655566777777766444444455444
No 429
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=40.81 E-value=73 Score=25.87 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
.+++..+.|++-| +++-|+-+|-..++-.++++.. .|+++||++
T Consensus 170 ~~~~~v~~lr~~~--~D~II~l~H~G~~~d~~la~~~--~giD~Iigg 213 (281)
T cd07409 170 AAQKEADKLKAQG--VNKIIALSHSGYEVDKEIARKV--PGVDVIVGG 213 (281)
T ss_pred HHHHHHHHHHhcC--CCEEEEEeccCchhHHHHHHcC--CCCcEEEeC
Confidence 4455555555543 7889999999998887887655 679999854
No 430
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=40.78 E-value=1.7e+02 Score=25.06 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=48.2
Q ss_pred CeEEEEeccC--CCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-------hHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 59 PIVGIIMESD--LDLPVMNDAARTLSDFGVPYEIKILPPHQN-------CKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 59 ~~V~IimGS~--SDl~~~~ka~~~L~~fGI~~ev~V~SAHRt-------p~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
-.|+||.=|. .+....+++.+.|+.+|..+.+.=....|. -+|+.++.+-..+.++++|.++=|+=
T Consensus 11 d~I~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGy 85 (313)
T COG1619 11 DEIGIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGY 85 (313)
T ss_pred CEEEEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCC
Confidence 3688876443 367889999999999996555433323332 37788888888889999999999873
No 431
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=40.61 E-value=1.4e+02 Score=24.93 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc-------------CCCChHHHHHHHHHHhhCCCeEEE
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILP-------------PHQNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~S-------------AHRtp~~~~~~~~~~~~~g~~ViI 118 (131)
+...+++.++-+++.|||+++-++. ..|-|+ ..++++..+++|++++.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~ 82 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPD-PKELIKELHEQGFKVVT 82 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCC-HHHHHHHHHHCCCEEEE
Confidence 5667788888889999999988887 346664 35677777788998864
No 432
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=40.26 E-value=33 Score=30.09 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=26.7
Q ss_pred CCeEEEEe---ccCCCHHHHHHHHHHHHHhCCCeeE
Q 032873 58 APIVGIIM---ESDLDLPVMNDAARTLSDFGVPYEI 90 (131)
Q Consensus 58 ~~~V~Iim---GS~SDl~~~~ka~~~L~~fGI~~ev 90 (131)
+|.+++++ |+.-.++-++|++++|+++|||.-+
T Consensus 156 ~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlll 191 (382)
T COG1103 156 PPALALLTHVDGEYGNLADAKKVAKICREYGVPLLL 191 (382)
T ss_pred CceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEe
Confidence 35566665 7888999999999999999998543
No 433
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=40.23 E-value=40 Score=24.80 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCeeEEEEc--CC-CChHHHHHHHHHHhhCCCeEEE
Q 032873 76 DAARTLSDFGVPYEIKILP--PH-QNCKEALSYALSAKERGIKIII 118 (131)
Q Consensus 76 ka~~~L~~fGI~~ev~V~S--AH-Rtp~~~~~~~~~~~~~g~~ViI 118 (131)
.+.+.|++.||+|++.--. ++ ++.+++.++......+.+|.+|
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~~~~t~~e~~~~~~~~~~~~~K~li 48 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDEDASDGLEAAEKLGLDPEQVFKTLV 48 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCCCcCCHHHHHHHhCCCHHHeEEEEE
Confidence 4567899999999988753 34 5777776665432333344444
No 434
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=40.15 E-value=1.1e+02 Score=27.17 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=25.0
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCC
Q 032873 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVP 87 (131)
Q Consensus 57 ~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~ 87 (131)
..+++++|+|..+.+..+-.++..| ..|-.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~ 68 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGAD 68 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCe
Confidence 4478999999999999888888888 77753
No 435
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.12 E-value=1.6e+02 Score=22.22 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=7.3
Q ss_pred ChHHHHHHHHHHhhCCCeEE
Q 032873 98 NCKEALSYALSAKERGIKII 117 (131)
Q Consensus 98 tp~~~~~~~~~~~~~g~~Vi 117 (131)
.+++..+.++.+-..+++.|
T Consensus 40 ~~~~~~~~i~~~~~~~~dgi 59 (277)
T cd06319 40 SAKKELENLRTAIDKGVSGI 59 (277)
T ss_pred CHHHHHHHHHHHHhcCCCEE
Confidence 33333333333333334333
No 436
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=40.05 E-value=89 Score=22.20 Aligned_cols=39 Identities=15% Similarity=0.063 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHH
Q 032873 70 DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALS 108 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~ 108 (131)
.=+.|++|.+.|++-|++|+++ +..--=+.+++.++++.
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~ 47 (114)
T TIGR00014 8 RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAK 47 (114)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHH
Confidence 3468999999999999999865 55555567777777764
No 437
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=40.04 E-value=73 Score=21.96 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=39.9
Q ss_pred cceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCee
Q 032873 17 GTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYE 89 (131)
Q Consensus 17 ghitVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SDl~~~~ka~~~L~~fGI~~e 89 (131)
.++||.+++...++.+++|.-+..+.. . . ..-++.-.+.|...-+.+...+++.|+++-
T Consensus 31 A~v~vis~~~~~~~~~i~~~~~~~~~~--------l----~--~~~lV~~at~d~~~n~~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 31 AKVTVISPEIEFSEGLIQLIRREFEED--------L----D--GADLVFAATDDPELNEAIYADARARGILVN 89 (103)
T ss_dssp BEEEEEESSEHHHHTSCEEEESS-GGG--------C----T--TESEEEE-SS-HHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEECCchhhhhhHHHHHhhhHHHH--------H----h--hheEEEecCCCHHHHHHHHHHHhhCCEEEE
Confidence 478899988877788888875443211 1 1 133555667788888999999999999764
No 438
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=39.75 E-value=1.1e+02 Score=20.28 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=27.1
Q ss_pred eccCCCHHHHHHHHHHHHHhCCC---eeEEEEcCCCChHHHHHHH
Q 032873 65 MESDLDLPVMNDAARTLSDFGVP---YEIKILPPHQNCKEALSYA 106 (131)
Q Consensus 65 mGS~SDl~~~~ka~~~L~~fGI~---~ev~V~SAHRtp~~~~~~~ 106 (131)
|=|.+.=|.|.+|.+.|++++++ +++.....++......++.
T Consensus 4 vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~ 48 (86)
T TIGR02183 4 IFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLE 48 (86)
T ss_pred EEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHH
Confidence 33556779999999999999764 3455555555443333343
No 439
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=39.39 E-value=79 Score=20.01 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCC
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPH 96 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAH 96 (131)
+.+.++.-.|+..|++|+...+...
T Consensus 10 ~~~~~~~~~l~~~gi~~~~~~v~~~ 34 (75)
T cd03044 10 PRSLKILAAAKYNGLDVEIVDFQPG 34 (75)
T ss_pred ccHHHHHHHHHHcCCceEEEecccc
Confidence 5677888899999999998887753
No 440
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=39.28 E-value=86 Score=28.74 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCee---------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 72 PVMNDAARTLSDFGVPYE---------------------IKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~e---------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
.+.++....|+++||.+- ..|-+..=+|+++.++++.+.++|++||+=+
T Consensus 157 ~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 157 ELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 445565688899999621 2334444568899999999999999999753
No 441
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.25 E-value=1.3e+02 Score=24.68 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcC----------------------CCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPP----------------------HQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SA----------------------HRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
+...+++.++-+++.|||+++-++-. +|-|+ ..+++++.+++|+++++-+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEe
Confidence 56778889999999999999887731 23343 4567777778999888744
No 442
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=39.02 E-value=67 Score=19.53 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcC
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPP 95 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SA 95 (131)
+.+.++.-.|+..|++|+...+..
T Consensus 10 ~~~~~~~~~L~~~~l~~~~~~v~~ 33 (74)
T cd03051 10 PNPRRVRIFLAEKGIDVPLVTVDL 33 (74)
T ss_pred cchHHHHHHHHHcCCCceEEEeec
Confidence 578899999999999999877764
No 443
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=38.86 E-value=1.6e+02 Score=24.21 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=40.3
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCC-eeEEEEc-CCCChHHHHHHHHHHhhCCCeE
Q 032873 64 IMESDLDLPVMNDAARTLSDFGVP-YEIKILP-PHQNCKEALSYALSAKERGIKI 116 (131)
Q Consensus 64 imGS~SDl~~~~ka~~~L~~fGI~-~ev~V~S-AHRtp~~~~~~~~~~~~~g~~V 116 (131)
+.|...+++...++.+.|.+.|++ +.+.++= ..-+-+++.++++.+.+.|+.+
T Consensus 131 i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~ 185 (334)
T TIGR02666 131 ITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTL 185 (334)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeE
Confidence 455556788888999999999997 7766542 3457888899998888888764
No 444
>PRK10026 arsenate reductase; Provisional
Probab=38.53 E-value=90 Score=23.67 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCC-CChHHHHHHHHH
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALS 108 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAH-Rtp~~~~~~~~~ 108 (131)
..|++|.+.|++.|++|+++=.-.+ -+.+++.++++.
T Consensus 13 st~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~ 50 (141)
T PRK10026 13 GTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIAD 50 (141)
T ss_pred HHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHh
Confidence 5799999999999999996655444 477888888764
No 445
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=38.50 E-value=1.4e+02 Score=20.86 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=4.4
Q ss_pred HHHHHHhCC
Q 032873 78 ARTLSDFGV 86 (131)
Q Consensus 78 ~~~L~~fGI 86 (131)
.+.+++.|+
T Consensus 63 ~~~a~~~g~ 71 (119)
T cd05017 63 VEQAKERGA 71 (119)
T ss_pred HHHHHHCCC
Confidence 334455554
No 446
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=38.48 E-value=1.5e+02 Score=24.30 Aligned_cols=46 Identities=11% Similarity=0.002 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCC------C-ChHHHHHHHHHHhhCCCeEE
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPH------Q-NCKEALSYALSAKERGIKII 117 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAH------R-tp~~~~~~~~~~~~~g~~Vi 117 (131)
+.+.++.+..++.|....+.+.-+. | +|+.+.++++.+.+-|++.|
T Consensus 114 ~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 166 (274)
T cd07938 114 ERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEI 166 (274)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 6667778888899988776666443 2 57888899988888888643
No 447
>PRK12313 glycogen branching enzyme; Provisional
Probab=38.45 E-value=84 Score=28.80 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCCee---------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 72 PVMNDAARTLSDFGVPYE---------------------IKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~e---------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
.+.++....|+++||.+- ..|-+..=+|+++.++++.+.++|++||.=+
T Consensus 171 ~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 171 ELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 345566689999999632 1233344568899999999999999999754
No 448
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=38.25 E-value=1.5e+02 Score=22.21 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=36.9
Q ss_pred CeEEEEeccCCCHHH---HHHHHHHHHHhCCCeeEE-EEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 59 PIVGIIMESDLDLPV---MNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 59 ~~V~IimGS~SDl~~---~~ka~~~L~~fGI~~ev~-V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
.+|++++|+..+... .+--.+.|++.|++++.. +..-.-.++...+.++..-+++++.|+|....
T Consensus 117 ~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~av~~~~d~ 185 (265)
T cd06299 117 KKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATKLLDQGATAIIAGDSM 185 (265)
T ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecCcchHHHHHHHHHHHcCCCCEEEEcCcH
Confidence 579999998765332 234455777788765432 22222234455555544333447888887653
No 449
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=38.23 E-value=1.7e+02 Score=25.22 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=40.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHH----HHHHHhhCCCeEEEEecCcC
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS----YALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~----~~~~~~~~g~~ViIA~AG~a 124 (131)
|.-+|+.+|++-...++....+|+..|+.+++..++---..+.+.+ +++.... +-+|++=+.|+.
T Consensus 27 p~kvvlI~t~~~~~~~~~L~~~l~~~~~~~e~~~i~d~~d~~~i~~~l~~l~~~~~~-~~~i~lNlTGGT 95 (381)
T PF09002_consen 27 PDKVVLIGTEDMKEKAERLKSVLKQRGIKVEFFEIPDEYDIEEIKESLEQLLEKLKA-GDEIILNLTGGT 95 (381)
T ss_dssp --EEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEE--SSS-HHHHHHHHHHHHHHHHH-T-EEEEE-SSS-
T ss_pred CCEEEEEECchHHHHHHHHHHHHHhcCCCceEEecCChhhHHHHHHHHHHHHHhccC-CCeEEEEeCCCh
Confidence 4566777787779999999999999999998776654445554444 3333433 679999998875
No 450
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=38.01 E-value=1.2e+02 Score=25.64 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=41.5
Q ss_pred CeEEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS~---SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..||||+|+- --+.++++..+.|++-|.++.+-+. =.=+|+++..| . +++||-+|
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~-~~in~~kL~nf-~------iD~fV~~a 270 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILL-DNISPDQLRNL-D------FDAYVNTA 270 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEe-CCCCHHHHhcC-C------cCEEEEcc
Confidence 4699999875 4678889999999999998755444 57789988766 2 66666544
No 451
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=37.95 E-value=47 Score=23.56 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=34.7
Q ss_pred eEEEEeccC--CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 60 IVGIIMESD--LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 60 ~V~IimGS~--SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
+|....|+- |=+-+-.++.+.|+++|+++++.+++.--.+.. ..++++|++.+=.+
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~---------~~~aDiiv~s~~l~ 60 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKAL---------TDGADIIVTSTKLA 60 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccC---------CCcccEEEEehHhh
Confidence 455666553 334455788999999999988777753222211 24567777665433
No 452
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=37.89 E-value=1.5e+02 Score=23.23 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCC--Ch----------HHHHHHHHHHhhCCCeEEE
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQ--NC----------KEALSYALSAKERGIKIII 118 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHR--tp----------~~~~~~~~~~~~~g~~ViI 118 (131)
+..++++.+.++.+|+++ +++.+... .+ +.+.++++.+++.|+++.|
T Consensus 93 ~~~~~~~i~~a~~lG~~~-v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRT-IQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHhCCCE-EEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE
No 453
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=37.82 E-value=76 Score=27.20 Aligned_cols=47 Identities=26% Similarity=0.360 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEE
Q 032873 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117 (131)
Q Consensus 68 ~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~Vi 117 (131)
.+-+.-++.+.++++.||||+-+-+-=+ +|... ++-+++++.|+.++
T Consensus 197 p~glhD~kr~~el~~~f~ip~~iViNr~--~~g~s-~ie~~~~e~gi~il 243 (284)
T COG1149 197 PFGLHDLKRALELVEHFGIPTGIVINRY--NLGDS-EIEEYCEEEGIPIL 243 (284)
T ss_pred ccchhHHHHHHHHHHHhCCceEEEEecC--CCCch-HHHHHHHHcCCCee
Confidence 3556667889999999999999888766 55555 55555567777765
No 454
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=37.80 E-value=1.7e+02 Score=21.89 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhCC
Q 032873 73 VMNDAARTLSDFGV 86 (131)
Q Consensus 73 ~~~ka~~~L~~fGI 86 (131)
..+.+.+.+...++
T Consensus 44 ~~~~~~~~l~~~~v 57 (270)
T cd01545 44 LAERVRALLQRSRV 57 (270)
T ss_pred HHHHHHHHHHHCCC
Confidence 33344444444443
No 455
>PRK06139 short chain dehydrogenase; Provisional
Probab=37.75 E-value=2.1e+02 Score=23.71 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhh--CCCeEEEEecCcC
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKE--RGIKIIIVGDGVE 124 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~--~g~~ViIA~AG~a 124 (131)
.+..++..+.|+++|....+..+ =-..++.+.++++...+ .+++++|-.||..
T Consensus 41 ~~~l~~~~~~~~~~g~~~~~~~~-Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 41 EEALQAVAEECRALGAEVLVVPT-DVTDADQVKALATQAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEe-eCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 34444444455555543222111 12345556665544433 3578888888854
No 456
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=37.63 E-value=89 Score=22.81 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=26.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH 96 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAH 96 (131)
+|+|+..-.-++.-+-...+.|+.-|..++++++|.+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~ 37 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLN 37 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4667776666666667777777777777777777776
No 457
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=37.40 E-value=2.3e+02 Score=23.13 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=50.2
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCee--------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~e--------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
-.++.|.-+-...++.....|..+|+++. +-++|.--..+++.+.++.++++|++++--.
T Consensus 49 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT 128 (326)
T PRK10892 49 KVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICIT 128 (326)
T ss_pred eEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEE
Confidence 45788888889999999999999998644 3345556667888899999999988766554
Q ss_pred cCcCCcCc
Q 032873 121 DGVEAHLS 128 (131)
Q Consensus 121 AG~aAhLp 128 (131)
....+-|.
T Consensus 129 ~~~~s~la 136 (326)
T PRK10892 129 GRPESSMA 136 (326)
T ss_pred CCCCCccc
Confidence 44444443
No 458
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=37.37 E-value=1.5e+02 Score=24.15 Aligned_cols=32 Identities=13% Similarity=0.005 Sum_probs=25.7
Q ss_pred CeEEEEeccCCC-----HHHHHHHHHHHHHhCCCeeE
Q 032873 59 PIVGIIMESDLD-----LPVMNDAARTLSDFGVPYEI 90 (131)
Q Consensus 59 ~~V~IimGS~SD-----l~~~~ka~~~L~~fGI~~ev 90 (131)
.+|+|++|+.|- +...+.+.+.|++.|....+
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 379999999998 56677888899998876543
No 459
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=37.28 E-value=72 Score=25.82 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=27.3
Q ss_pred eEEEEe-ccCCCHHHHHHHHHHHHHhCCCeeEE
Q 032873 60 IVGIIM-ESDLDLPVMNDAARTLSDFGVPYEIK 91 (131)
Q Consensus 60 ~V~Iim-GS~SDl~~~~ka~~~L~~fGI~~ev~ 91 (131)
..+|+| +..|+....+.|.+.+++|||++..-
T Consensus 47 v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i 79 (242)
T PF02540_consen 47 VLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVI 79 (242)
T ss_dssp EEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEE
T ss_pred ccccccccccCChHHHHHHHHHHHHhCCCeecc
Confidence 578888 68888899999999999999987643
No 460
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=36.94 E-value=1.6e+02 Score=22.10 Aligned_cols=52 Identities=8% Similarity=0.068 Sum_probs=32.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC--CChHHHHHHHHHHhhCCCe
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIK 115 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAH--Rtp~~~~~~~~~~~~~g~~ 115 (131)
.|++-.=---+-....++.++|+++|++..+.|++-+ +.|+.+.++ .+.|..
T Consensus 7 ~V~LTFDDgp~~~~t~~~l~~L~~~~ikaTfFv~g~~~~~~~~~~~~i----~~~Ghe 60 (191)
T TIGR02764 7 KIALTFDISWGNDYTEPILDTLKEYDVKATFFLSGSWAERHPELVKEI----VKDGHE 60 (191)
T ss_pred EEEEEEECCCCcccHHHHHHHHHHcCCCEEEEeccHHHHHCHHHHHHH----HhCCCE
Confidence 4555552222223467889999999999999888733 455554444 445653
No 461
>PRK10785 maltodextrin glucosidase; Provisional
Probab=36.93 E-value=1.3e+02 Score=27.56 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhCCCee-------------------EEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 70 DLPVMNDAARTLSDFGVPYE-------------------IKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~e-------------------v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|+.=+.+-...|+++||..- .+|-..-=+.+.+.++++.+.++|++||+=+
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 78878788899999999622 1121112245789999999999999999743
No 462
>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....
Probab=36.87 E-value=32 Score=24.34 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEE
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIK 91 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~ 91 (131)
-+-|.++++.++|+++|+++.+.
T Consensus 26 V~~P~~~EI~~a~~~Lgl~~~~E 48 (95)
T PF01922_consen 26 VENPTLEEIADACKKLGLPCVVE 48 (95)
T ss_dssp BSS--HHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCCEEEc
Confidence 36689999999999999998843
No 463
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=36.83 E-value=1.6e+02 Score=21.13 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=39.2
Q ss_pred eEEEEeccCCC--HHHHHHHHHHHHHhCCCee--------------------EEEEc-CC---CChHHHHHHHHHHhhCC
Q 032873 60 IVGIIMESDLD--LPVMNDAARTLSDFGVPYE--------------------IKILP-PH---QNCKEALSYALSAKERG 113 (131)
Q Consensus 60 ~V~IimGS~SD--l~~~~ka~~~L~~fGI~~e--------------------v~V~S-AH---Rtp~~~~~~~~~~~~~g 113 (131)
++.|+-+|.+- ..+++.+++.|+.-|++++ +-+.| .+ ..|+.+..|++....+|
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~ 81 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKP 81 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccC
Confidence 46667666543 4455565666655454332 22223 23 56778888887766677
Q ss_pred CeEEEEecCcCC
Q 032873 114 IKIIIVGDGVEA 125 (131)
Q Consensus 114 ~~ViIA~AG~aA 125 (131)
.++.+-+.|.++
T Consensus 82 k~~avfgtgd~~ 93 (140)
T TIGR01754 82 SNVAIFGTGETQ 93 (140)
T ss_pred CEEEEEEcCCCC
Confidence 788777777543
No 464
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=36.81 E-value=74 Score=20.45 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEc
Q 032873 72 PVMNDAARTLSDFGVPYEIKILP 94 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~S 94 (131)
+.+.++.-.|++.|++|++.-+.
T Consensus 10 ~~s~rv~~~L~e~gl~~e~~~v~ 32 (73)
T cd03052 10 FSSQKVRLVIAEKGLRCEEYDVS 32 (73)
T ss_pred ccHHHHHHHHHHcCCCCEEEEec
Confidence 34577788999999999987554
No 465
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=36.80 E-value=1.7e+02 Score=21.42 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=28.2
Q ss_pred HHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 78 ARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 78 ~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
...|+++|+......+-.+. ++++.+.++.+.+ +++++|..-|.+
T Consensus 33 ~~~l~~~G~~v~~~~~v~Dd-~~~i~~~l~~~~~-~~DliIttGG~g 77 (144)
T TIGR00177 33 AALLEEAGFNVSRLGIVPDD-PEEIREILRKAVD-EADVVLTTGGTG 77 (144)
T ss_pred HHHHHHCCCeEEEEeecCCC-HHHHHHHHHHHHh-CCCEEEECCCCC
Confidence 45678899765544443333 5666666665543 588888885443
No 466
>PTZ00323 NAD+ synthase; Provisional
Probab=36.79 E-value=62 Score=27.29 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=26.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCee
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE 89 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~e 89 (131)
.+++.|.+.|.-...+.|.+.++.+||++.
T Consensus 80 ~~~v~~P~~ss~~~~~~A~~la~~lGi~~~ 109 (294)
T PTZ00323 80 NVGLCQPIHSSAWALNRGRENIQACGATEV 109 (294)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 688899988888899999999999999865
No 467
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=36.73 E-value=29 Score=24.34 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=31.6
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEc--CCCChHHHHHHHHHH
Q 032873 65 MESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSA 109 (131)
Q Consensus 65 mGS~SDl~~~~ka~~~L~~fGI~~ev~V~S--AHRtp~~~~~~~~~~ 109 (131)
.|+.|--+++.++.+.|++.|++|++.=.+ ..=..+++.+.++.+
T Consensus 10 ~~~~s~~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe~dev~~~i~~~ 56 (92)
T PF01910_consen 10 TGGESVSAYVAEAIEVIKESGLKYEVGPMGTTIEGELDEVMALIKEA 56 (92)
T ss_dssp SSSSHHHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEcCCccEEEecHHHHHHHHHHH
Confidence 347788899999999999999998864222 111266666666444
No 468
>PTZ00445 p36-lilke protein; Provisional
Probab=36.72 E-value=81 Score=26.04 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=42.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCC-----eeEEEEcCC------C----------ChHHHHHHHHHHhhCCCeEEEEe
Q 032873 67 SDLDLPVMNDAARTLSDFGVP-----YEIKILPPH------Q----------NCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 67 S~SDl~~~~ka~~~L~~fGI~-----~ev~V~SAH------R----------tp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
|.|..+..++-.+.|++.||. +|.++++.| + .+.++..+++.+.+.|++|+|+-
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVT 98 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVT 98 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEE
Confidence 447888899999999999995 566766633 2 25568889999999999999874
No 469
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=36.69 E-value=1.5e+02 Score=23.31 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=39.1
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 59 ~~V~IimGS~-SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
.+|+||-..+ .-....+...+.|++.|+..- .....--....+..++....+.+.++++..++.
T Consensus 136 ~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv-~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~ 200 (343)
T PF13458_consen 136 KKVAIVYPDDPYGRSLAEAFRKALEAAGGKVV-GEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDP 200 (343)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE-EEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTH
T ss_pred cEEEEEecCchhhhHHHHHHHHHHhhcCceec-cceecccccccchHHHHHHhhcCCCEEEEeccc
Confidence 3788886543 223455667788889999842 122222344666677777777788887666543
No 470
>PRK04017 hypothetical protein; Provisional
Probab=36.63 E-value=36 Score=25.90 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=32.8
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 61 V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
+.||.-+.+|.. .|+++|+++++-++|=....+.. +.+ +..+-.|||-
T Consensus 24 ~vIVVEGk~D~~-------~L~~lGv~~~iI~t~g~~~~~~~-e~i---a~~~r~VIIL 71 (132)
T PRK04017 24 APIIVEGKRDVE-------SLRKLGVEGEIIKVSRTPLAEIA-ELI---ASRGKEVIIL 71 (132)
T ss_pred CEEEEeCccHHH-------HHHHcCCCccEEEECCeecchHH-HHH---HhcCCeEEEE
Confidence 456666678865 45689999999998877766666 444 2344577774
No 471
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=36.49 E-value=1.5e+02 Score=21.36 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEc--CCCCh-----------HHHHHHHHHHhhCCCeEEE
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILP--PHQNC-----------KEALSYALSAKERGIKIII 118 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~S--AHRtp-----------~~~~~~~~~~~~~g~~ViI 118 (131)
+..++++.+.++.+|+++-+.-.. .+... +.+.++.+.+++.|+++.+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 789999999999999998544433 12222 1445556777777777655
No 472
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=36.45 E-value=1.2e+02 Score=20.81 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=32.4
Q ss_pred EEecc-CCCHHHHHHHHHHHHH-hCCCeeEEEEcCCCChHHHHHH
Q 032873 63 IIMES-DLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSY 105 (131)
Q Consensus 63 IimGS-~SDl~~~~ka~~~L~~-fGI~~ev~V~SAHRtp~~~~~~ 105 (131)
.+.|. ..-....+...++|++ ++-+|++.|+=....|+..+++
T Consensus 7 yv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~ 51 (72)
T cd02978 7 YVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEED 51 (72)
T ss_pred EECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhC
Confidence 34454 4555667777788876 5889999999999999987653
No 473
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=36.28 E-value=2.8e+02 Score=23.89 Aligned_cols=59 Identities=8% Similarity=0.131 Sum_probs=42.2
Q ss_pred CeEEEEeccCCC-------HHHHHHHHHHHHHhCCCeeEEEEcCC-------------CChHHHHHHHHHHhh--CCCeE
Q 032873 59 PIVGIIMESDLD-------LPVMNDAARTLSDFGVPYEIKILPPH-------------QNCKEALSYALSAKE--RGIKI 116 (131)
Q Consensus 59 ~~V~IimGS~SD-------l~~~~ka~~~L~~fGI~~ev~V~SAH-------------Rtp~~~~~~~~~~~~--~g~~V 116 (131)
.++.+..|++.| +..++++.+.|+++|+|+-+-+++.= ..|+.+...++.+.+ -|++|
T Consensus 123 Vk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDv 202 (340)
T PRK12858 123 VKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDV 202 (340)
T ss_pred EEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeE
Confidence 578899998866 23466788899999999988764432 347777777766653 67765
Q ss_pred E
Q 032873 117 I 117 (131)
Q Consensus 117 i 117 (131)
+
T Consensus 203 l 203 (340)
T PRK12858 203 L 203 (340)
T ss_pred E
Confidence 5
No 474
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=36.22 E-value=1.6e+02 Score=22.32 Aligned_cols=47 Identities=9% Similarity=-0.004 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.++.+...+.++++|+|+-+...+ .|+++.++++... ....+++-..
T Consensus 107 ~~~~~~~~~~a~e~~~pv~iH~~~---~~~~~~~l~~~~~-~~~~~i~H~~ 153 (251)
T cd01310 107 KEVFRAQLELAKELNLPVVIHSRD---AHEDVLEILKEYG-PPKRGVFHCF 153 (251)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeC---chHHHHHHHHhcC-CCCCEEEEcc
Confidence 466888899999999999888654 4888888887553 1235555443
No 475
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=36.12 E-value=61 Score=25.46 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=39.1
Q ss_pred EEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCCCChHHHHHHHHHHh
Q 032873 63 IIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAK 110 (131)
Q Consensus 63 IimGS~SDl~~~~ka~~~L~~-fGI~~ev~V~SAHRtp~~~~~~~~~~~ 110 (131)
|++.-..|.++++++.++|++ |-.+|++++--.-|+-.-+.+|+++-.
T Consensus 77 i~lele~~~~~ie~I~~iCee~lpf~y~i~~G~f~r~~~TvtDY~KyG~ 125 (153)
T PF02505_consen 77 IILELEDEEDVIEKIREICEEVLPFGYDIKEGKFIRTKPTVTDYAKYGE 125 (153)
T ss_pred EEEEecCcHHHHHHHHHHHHHhCCCceEeeeeEEeccCCchhhhhhcCc
Confidence 344444449999999999986 888899999888999999999998763
No 476
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.07 E-value=2.5e+02 Score=24.37 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=47.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC---------ChHHHHHHHHHHhhCCCeEEEE
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------NCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHR---------tp~~~~~~~~~~~~~g~~ViIA 119 (131)
...+|=|=..+.+.+++.++.|+.++ +.+.++-.|. +++++.+|.+..++.|+.|.|-
T Consensus 267 eyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR 333 (356)
T PRK14462 267 EYLVIKDVNDDLKSAKKLVKLLNGIK--AKVNLILFNPHEGSKFERPSLEDMIKFQDYLNSKGLLCTIR 333 (356)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 46778888899999999999999874 6888888885 3567777887788889998875
No 477
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=36.02 E-value=85 Score=23.29 Aligned_cols=47 Identities=19% Similarity=0.053 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCeeEE----------------EEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 75 NDAARTLSDFGVPYEIK----------------ILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 75 ~ka~~~L~~fGI~~ev~----------------V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
++..+.|++++++.-+- -...|-.-+-+.++++.+.++|++|++=..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 45667788888763321 123344457778888999999999987543
No 478
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=35.99 E-value=45 Score=24.30 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=34.5
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEE----EEcCCCChHHHHHHHHHHhh
Q 032873 65 MESDLDLPVMNDAARTLSDFGVPYEIK----ILPPHQNCKEALSYALSAKE 111 (131)
Q Consensus 65 mGS~SDl~~~~ka~~~L~~fGI~~ev~----V~SAHRtp~~~~~~~~~~~~ 111 (131)
.|++|=-+.+.++.++|+++|++|++. ++=. .-+++.+.++.+.+
T Consensus 14 t~~~svs~yVa~~i~~lk~~glky~~~pm~T~iEg--~~del~~~ik~~~E 62 (100)
T COG0011 14 TGGPSVSKYVAEAIEILKESGLKYQLGPMGTVIEG--ELDELMEAVKEAHE 62 (100)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceeecCcceEEEe--cHHHHHHHHHHHHH
Confidence 356666889999999999999999953 4444 77888888866544
No 479
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=35.95 E-value=2.4e+02 Score=23.07 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=40.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 60 IVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 60 ~V~IimGS~SDl~~~~ka~~~L~~-fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
+|.++ |+ +-.+++++++.|++ ||+.. +...+-.-.|++-.++++.....+.++++.+=|.
T Consensus 107 ~v~ll-G~--~~~v~~~a~~~l~~~y~l~i-~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 107 PVFLV-GG--KPEVLAQTEAKLRTQWNVNI-VGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred eEEEE-CC--CHHHHHHHHHHHHHHhCCEE-EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 56555 75 45689999998854 55543 2222333357777778888888889998887663
No 480
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=35.93 E-value=2.1e+02 Score=23.83 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcC-----CC----------ChHHHHHHHHHHhhCCCeEEEEe
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPP-----HQ----------NCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SA-----HR----------tp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
+...+++.++-+++.+||+++-++-. ++ -|+ ..+++++..++|++|++.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPD-PKAMVRELHEMNAELMISI 86 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCC-HHHHHHHHHHCCCEEEEEe
Confidence 55557788888899999999877763 33 132 4566777778999987644
No 481
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.90 E-value=49 Score=28.18 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCCcCc
Q 032873 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (131)
Q Consensus 73 ~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aAhLp 128 (131)
+.+..+..|.+-+..-..+|+..|...+.+.++.+. .+++|+++|.+.-+.
T Consensus 169 VGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~-----ADIvIsAvGkp~~i~ 219 (297)
T PRK14167 169 VGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRR-----ADIVVAAAGVPELID 219 (297)
T ss_pred cHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 455555555432111124566678887777777753 699999999987554
No 482
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=35.82 E-value=1.4e+02 Score=26.06 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=36.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
..|.|+--++.....+.+.+..|.+-|+.+++... .+..++ -++++...|++.+|.+
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~--~~~l~k---~~k~A~~~~~~~viii 382 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLS--SSNFHK---QIKQAGKKRAKACIIL 382 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeC--CCCHHH---HHHHHHHcCCCEEEEE
Confidence 35767654555677788888899999999887553 344444 4445556676544433
No 483
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=35.78 E-value=1.1e+02 Score=27.61 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=40.6
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..|.|+-=+....+.+.++++.|.+.|+.+++... -+++.+-. ++|...|+..+|.+.
T Consensus 540 ~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~--~~~l~kki---~~A~~~g~~~~iiiG 597 (638)
T PRK00413 540 VQVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLR--NEKIGYKI---REAQLQKVPYMLVVG 597 (638)
T ss_pred ceEEEEEeChhHHHHHHHHHHHHHhCCCEEEEECC--CCCHhHHH---HHhhccCCCEEEEEc
Confidence 35777766677788899999999999998887753 34454444 445577886666554
No 484
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=35.73 E-value=1.6e+02 Score=20.94 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCee-EEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcC
Q 032873 77 AARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (131)
Q Consensus 77 a~~~L~~fGI~~e-v~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~a 124 (131)
..+.|+++|.... ..++. -.++.+.+.++.+.+ .++++|..-|.+
T Consensus 23 l~~~l~~~G~~~~~~~~v~--Dd~~~I~~~l~~~~~-~~dliittGG~g 68 (135)
T smart00852 23 LAELLTELGIEVTRYVIVP--DDKEAIKEALREALE-RADLVITTGGTG 68 (135)
T ss_pred HHHHHHHCCCeEEEEEEeC--CCHHHHHHHHHHHHh-CCCEEEEcCCCC
Confidence 4556889998754 44443 566666676665544 378877775433
No 485
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=35.62 E-value=57 Score=26.64 Aligned_cols=55 Identities=24% Similarity=0.217 Sum_probs=41.3
Q ss_pred CCHHH-HHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecCcCC
Q 032873 69 LDLPV-MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (131)
Q Consensus 69 SDl~~-~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG~aA 125 (131)
.+++- .+...+.|.+ =-++|+-|+ ....||-+.++.+.+++.|++.+|+.++...
T Consensus 33 ~~l~efId~pee~Lp~-i~~~Dl~I~-y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~ 88 (217)
T PF02593_consen 33 EDLPEFIDDPEEYLPK-IPEADLLIA-YGLHPDLTYELPEIAKEAGVKAVIVPSESPK 88 (217)
T ss_pred ccccccccChHHHccC-CCCCCEEEE-eccCchhHHHHHHHHHHcCCCEEEEecCCCc
Confidence 36665 6667777777 224676655 6777999999998888889999998887766
No 486
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.50 E-value=38 Score=23.30 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHhCCCee----------EEEEcCCCChHHHHHHHHHH
Q 032873 70 DLPVMNDAARTLSDFGVPYE----------IKILPPHQNCKEALSYALSA 109 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~e----------v~V~SAHRtp~~~~~~~~~~ 109 (131)
-.-.+.|+..+|+++||+|| +-|-...-+.+...+++.+.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSGID~~Siii~~~~~~~~~~~~i~~~i 63 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSGIDDISIIIRDNQLTDEKEQKILAEI 63 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCCCccEEEEEEccccchhhHHHHHHHH
Confidence 34568899999999999999 22222333354666666443
No 487
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=35.49 E-value=1.3e+02 Score=23.69 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEecC
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~AG 122 (131)
-..+.+++.+.+++-. +++.+.-.....+++.+.++.+.++|++|.+.+-|
T Consensus 8 ~~~I~~~i~elI~~Ae--~eI~is~~~~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAE--SEIYISIPPEFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-S--SEEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhh--eEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 3456677777777654 46666666677778888888899999999999888
No 488
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=35.46 E-value=1e+02 Score=21.30 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=37.5
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEe
Q 032873 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 65 mGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~ 120 (131)
.|...|-|-+++..+.++.+.+=.-....-.-|.+.++..+++...+.|+.++.+-
T Consensus 36 s~~~~~R~~~~~ll~~~~~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~gi~l~~~~ 91 (126)
T cd03768 36 SGGKKERPELQKLLEDLREGDTLVVTKLDRLGRSTKDLLEIVEELREKGVSLRSLT 91 (126)
T ss_pred ccCCcCCHHHHHHHHhCcCCCEEEEEEcchhcCcHHHHHHHHHHHHHCCCEEEEec
Confidence 34446888888888877743321112222356777778888888889999998873
No 489
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=35.38 E-value=74 Score=24.34 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=21.8
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHH
Q 032873 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (131)
Q Consensus 66 GS~SDl~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~ 106 (131)
|..-|+-..--++.+|+.|||. ++++.|. +|.++..+.
T Consensus 120 ~~~~d~R~ygigaqIL~dLGV~-~~rLLtn--np~k~~~L~ 157 (169)
T PF00925_consen 120 GFPEDLRDYGIGAQILRDLGVK-KMRLLTN--NPRKYVALE 157 (169)
T ss_dssp T--S----THHHHHHHHHTT---SEEEE-S---HHHHHHHH
T ss_pred cCccccccHHHHHHHHHHcCCC-EEEECCC--ChhHHHHHh
Confidence 3346777777889999999998 8999987 676655543
No 490
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=35.28 E-value=1.6e+02 Score=26.01 Aligned_cols=50 Identities=18% Similarity=0.083 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeEEEEe
Q 032873 71 LPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVG 120 (131)
Q Consensus 71 l~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~ViIA~ 120 (131)
++.+.++.+.++++|+++....-.++|+ |+.+.+.++.+..-|+..|.-+
T Consensus 116 l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~ 166 (409)
T COG0119 116 LERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLP 166 (409)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 3455677788889998777778889998 6677778888877667666544
No 491
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=35.18 E-value=2e+02 Score=21.82 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=33.1
Q ss_pred CeEEEEecc-------CCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 59 PIVGIIMES-------DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 59 ~~V~IimGS-------~SD---l~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
..|+||+-+ .+| ....+.+.+.++++|+...+.... +. +...+.+.....+++.||..+
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~-~~---~~~~~~~~l~~~~~dgiii~~ 72 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVS-SP---DRDWLARYLASGRADGVILIG 72 (275)
T ss_pred eEEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCC-ch---hHHHHHHHHHhCCCCEEEEeC
Confidence 368888864 222 234555777788888765554322 21 223444444456688777654
No 492
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.18 E-value=2e+02 Score=21.75 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=41.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CChHHHHHHHHHHhhCCCeEEEEecCc
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGV 123 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAH---Rtp~~~~~~~~~~~~~g~~ViIA~AG~ 123 (131)
..|.++.|++ ++++++...|++..= .++|+..| ..+++..++++.....+.++++.+=|.
T Consensus 49 ~~ifllG~~~---~~~~~~~~~l~~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 49 KRIFLLGGSE---EVLEKAAANLRRRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred CeEEEEeCCH---HHHHHHHHHHHHHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 4677777664 666777777765421 34444433 367888889988888899999988764
No 493
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=35.18 E-value=25 Score=25.62 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=15.9
Q ss_pred HHHHHHhhCCCeEEEEecCcCCcC
Q 032873 104 SYALSAKERGIKIIIVGDGVEAHL 127 (131)
Q Consensus 104 ~~~~~~~~~g~~ViIA~AG~aAhL 127 (131)
+.+...-.+|-+||++++|.|+.+
T Consensus 26 ~~i~~~~~~gg~i~~~G~G~S~~~ 49 (138)
T PF13580_consen 26 DLIAEALRNGGRIFVCGNGHSAAI 49 (138)
T ss_dssp HHHHHHHHTT--EEEEESTHHHHH
T ss_pred HHHHHHHHCCCEEEEEcCchhhhH
Confidence 334445567889999999998654
No 494
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=35.13 E-value=1.8e+02 Score=23.40 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCC-hHHHHHHHHHHhhCCCeE
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKI 116 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRt-p~~~~~~~~~~~~~g~~V 116 (131)
+.+.++.+.+++.|..+.+...-+.|. |+.+.++++.+.+-|++.
T Consensus 114 ~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 159 (268)
T cd07940 114 ERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATT 159 (268)
T ss_pred HHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCE
Confidence 445566667778887666555455554 677788888887777764
No 495
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=34.90 E-value=2e+02 Score=21.82 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=11.6
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhC
Q 032873 62 GIIMESDLDLPVMNDAARTLSDFG 85 (131)
Q Consensus 62 ~IimGS~SDl~~~~ka~~~L~~fG 85 (131)
.++..+.+|.....++.+.|..-+
T Consensus 32 ~~~~~~~~~~~~~~~~i~~l~~~~ 55 (273)
T cd06309 32 LKFADAQQKQENQISAIRSFIAQG 55 (273)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcC
Confidence 334445555555545554454444
No 496
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=34.87 E-value=1.9e+02 Score=24.58 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc-------------CCCChHHHHHHHHHHhhCCCeEEEE
Q 032873 70 DLPVMNDAARTLSDFGVPYEIKILP-------------PHQNCKEALSYALSAKERGIKIIIV 119 (131)
Q Consensus 70 Dl~~~~ka~~~L~~fGI~~ev~V~S-------------AHRtp~~~~~~~~~~~~~g~~ViIA 119 (131)
..+.+++.++.+++.+||+++-++. ..|-|+ ..+++++..+.|+++++-
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~ 83 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTN 83 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCC-HHHHHHHHHHCCCeEEEE
Confidence 4566788888999999999977664 356665 356777788889987653
No 497
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=34.82 E-value=2.1e+02 Score=23.30 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC---------------CCChHHHHHHHHHHhhCCCeEEEEec
Q 032873 69 LDLPVMNDAARTLSDFGVPYEIKILPP---------------HQNCKEALSYALSAKERGIKIIIVGD 121 (131)
Q Consensus 69 SDl~~~~ka~~~L~~fGI~~ev~V~SA---------------HRtp~~~~~~~~~~~~~g~~ViIA~A 121 (131)
.+.+.+++.++-+++.|||+++-++-. .|-|+ ..++++...+.|+++++-+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEec
Confidence 456667788888899999998655442 24454 46778888889999888653
No 498
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=34.74 E-value=1.6e+02 Score=26.17 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=54.5
Q ss_pred cceeeecCChHHHhhcccccccccCCCcccccCCCCCCCCCCCeEEEEecc-CCCHHHHHHHHHHHHHhC--CCeeEEEE
Q 032873 17 GTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMES-DLDLPVMNDAARTLSDFG--VPYEIKIL 93 (131)
Q Consensus 17 ghitVt~~~l~~vk~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS-~SDl~~~~ka~~~L~~fG--I~~ev~V~ 93 (131)
-.++|+.+++.++...+. . . ....+.+ |.+|. .-.+..++++++.|+.-+ ...++-|+
T Consensus 266 e~i~i~~~dl~~~~~~l~--~---~-------------~~~~~D~-V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~ 326 (400)
T PF04412_consen 266 ERITITDADLEEVYEELN--T---A-------------GDEKVDL-VALGCPHLSLEELREIAELLEGRKVHPNVPLWIT 326 (400)
T ss_pred eEEEeCHHHHHHHHHHhc--c---C-------------CCCCCCE-EEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 357777777776666553 0 0 1112233 44454 567888888888888777 66778888
Q ss_pred cCCCChHHHHH--HHHHHhhCCCeEE
Q 032873 94 PPHQNCKEALS--YALSAKERGIKII 117 (131)
Q Consensus 94 SAHRtp~~~~~--~~~~~~~~g~~Vi 117 (131)
..+-.-+...+ |++..++.|.+|+
T Consensus 327 t~~~v~~~a~~~G~~~~le~~G~~iv 352 (400)
T PF04412_consen 327 TSRAVYELAERMGYVERLEKAGVQIV 352 (400)
T ss_pred CCHHHHHHHHhCCHHHHHHHcCCEEE
Confidence 77777777777 7777777777665
No 499
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=34.73 E-value=1.8e+02 Score=23.95 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=34.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC--CChHHHHHHHHHHhhCCCe
Q 032873 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIK 115 (131)
Q Consensus 59 ~~V~IimGS~SDl~~~~ka~~~L~~fGI~~ev~V~SAH--Rtp~~~~~~~~~~~~~g~~ 115 (131)
+.|++..--.-+-....++..+|+++|++..+.+++-+ +.|+.+.+ ..++|..
T Consensus 85 k~VaLTFDdg~~~~~t~~iL~iLkk~~vkATFFv~G~~i~~~p~l~k~----i~~~Ghe 139 (268)
T TIGR02873 85 PMVALLINVAWGNEYLPEILQILKKHDVKATFFLEGKWVKENSQLAKM----IVEQGHE 139 (268)
T ss_pred CEEEEEEeCCCCcchHHHHHHHHHHCCCCEEEEeehHhhhHCHHHHHH----HHHCCCE
Confidence 45666442212236788999999999999999998833 45554444 3445643
No 500
>PLN02378 glutathione S-transferase DHAR1
Probab=34.71 E-value=63 Score=24.78 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCChHHHHH
Q 032873 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (131)
Q Consensus 72 ~~~~ka~~~L~~fGI~~ev~V~SAHRtp~~~~~ 104 (131)
+.+.++.-.|++.|++|++..+..+..|+++.+
T Consensus 21 p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~ 53 (213)
T PLN02378 21 PFSQRALLTLEEKSLTYKIHLINLSDKPQWFLD 53 (213)
T ss_pred cchHHHHHHHHHcCCCCeEEEeCcccCCHHHHH
Confidence 478899999999999999988876655654433
Done!