RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032873
         (131 letters)



>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Escherichia coli [TaxId: 562]}
          Length = 163

 Score = 73.4 bits (180), Expect = 4e-18
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
             V I+M S  D   M  AA       VP+ ++++  H+   +  S+A SA+E G ++II
Sbjct: 2   ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVII 61

Query: 119 VGDGVEAHLSGTL 131
            G G  AHL G +
Sbjct: 62  AGAGGAAHLPGMI 74


>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
          Length = 169

 Score = 70.7 bits (173), Expect = 5e-17
 Identities = 38/73 (52%), Positives = 47/73 (64%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
           P VGIIM SD DLPVM  AA  L +FG+ YEI I+  H+       YA +A+ERGI++II
Sbjct: 1   PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60

Query: 119 VGDGVEAHLSGTL 131
            G G  AHL G +
Sbjct: 61  AGAGGAAHLPGMV 73


>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
          Length = 155

 Score = 69.9 bits (171), Expect = 7e-17
 Identities = 29/73 (39%), Positives = 41/73 (56%)

Query: 59  PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
            +VG+IM S  D   M  A   L +  +PYE K++  H+       YA +A+ERG+K+II
Sbjct: 2   SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 61

Query: 119 VGDGVEAHLSGTL 131
            G G  AHL G +
Sbjct: 62  AGAGGAAHLPGMV 74


>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
          Length = 159

 Score = 68.0 bits (166), Expect = 4e-16
 Identities = 30/74 (40%), Positives = 40/74 (54%)

Query: 58  APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117
           AP+VGIIM S  D   M  A   L++  +P+E  I+  H+       YA +A ERG+ +I
Sbjct: 2   APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVI 61

Query: 118 IVGDGVEAHLSGTL 131
           I G G  AHL G  
Sbjct: 62  IAGAGGAAHLPGMC 75


>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
           succinogenes [TaxId: 844]}
          Length = 336

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 4/18 (22%), Positives = 12/18 (66%)

Query: 102 ALSYALSAKERGIKIIIV 119
            L  A++ +++G+  I++
Sbjct: 17  GLRAAVATQQKGLSTIVL 34


>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
           (respiratory fumarate reductase) {Shewanella
           frigidimarina [TaxId: 56812]}
          Length = 317

 Score = 25.7 bits (55), Expect = 1.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 103 LSYALSAKERGIKIIIV 119
            + +L+AK+ G  +I+V
Sbjct: 32  FNASLAAKKAGANVILV 48


>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
           (respiratory fumarate reductase) {Shewanella
           frigidimarina [TaxId: 56812]}
          Length = 308

 Score = 25.4 bits (54), Expect = 2.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 103 LSYALSAKERGIKIIIV 119
            S A+SA + G K+I++
Sbjct: 29  FSAAISATDSGAKVILI 45


>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
           (respiratory fumarate reductase) {Shewanella
           putrefaciens [TaxId: 24]}
          Length = 322

 Score = 24.9 bits (53), Expect = 3.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 103 LSYALSAKERGIKIIIV 119
           L+ A+SA++ G K+I++
Sbjct: 36  LAAAVSARDAGAKVILL 52


>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
           {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 653

 Score = 24.9 bits (54), Expect = 4.0
 Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 2/20 (10%)

Query: 109 AKERGIKIIIVGDGVEAHLS 128
           A   G+ II   D V  H++
Sbjct: 75  AHTIGLGIIQ--DIVPNHMA 92


>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
           {Escherichia coli [TaxId: 562]}
          Length = 330

 Score = 24.1 bits (51), Expect = 6.6
 Identities = 3/18 (16%), Positives = 7/18 (38%)

Query: 102 ALSYALSAKERGIKIIIV 119
            +  AL   + G    ++
Sbjct: 19  GMRAALQISQSGQTCALL 36


>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani
           [TaxId: 5661]}
          Length = 192

 Score = 23.8 bits (51), Expect = 7.4
 Identities = 2/21 (9%), Positives = 8/21 (38%)

Query: 106 ALSAKERGIKIIIVGDGVEAH 126
                +   ++ +  DG+ + 
Sbjct: 117 VADLLDMNKRVFLPKDGLGSQ 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0387    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 463,496
Number of extensions: 19947
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 13
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.2 bits)