Query 032876
Match_columns 131
No_of_seqs 157 out of 228
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03221 rapid alkalinization 100.0 3.5E-40 7.6E-45 250.4 7.6 113 16-131 18-137 (137)
2 PLN03222 rapid alkalinization 100.0 2.9E-40 6.4E-45 246.2 5.1 105 17-131 15-119 (119)
3 PF05498 RALF: Rapid ALkaliniz 100.0 5.5E-29 1.2E-33 169.1 4.4 65 67-131 2-66 (66)
4 PF07172 GRP: Glycine rich pro 86.1 0.8 1.7E-05 33.0 2.9 20 1-21 1-20 (95)
5 PF12273 RCR: Chitin synthesis 69.8 3.5 7.6E-05 30.3 2.0 16 5-20 1-16 (130)
6 PF05279 Asp-B-Hydro_N: Aspart 53.4 12 0.00025 31.5 2.5 22 4-25 10-31 (243)
7 COG5510 Predicted small secret 24.2 70 0.0015 20.6 2.0 18 17-34 12-29 (44)
8 PRK10081 entericidin B membran 24.0 68 0.0015 20.9 2.0 18 17-34 12-29 (48)
9 PF10731 Anophelin: Thrombin i 18.2 1.2E+02 0.0025 21.0 2.2 15 4-18 3-17 (65)
10 PF12662 cEGF: Complement Clr- 18.1 1E+02 0.0022 17.2 1.6 19 109-127 5-23 (24)
No 1
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=100.00 E-value=3.5e-40 Score=250.39 Aligned_cols=113 Identities=67% Similarity=1.115 Sum_probs=91.3
Q ss_pred HHHHHHHHhcCCcccccCCCcccccccccCCCcccchhhhhcccC--CCCc---cccc--hhhccccchhhhhhhhcccc
Q 032876 16 IILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEG--DDGD---QELD--LEFAMDGEINRRILAMRRYI 88 (131)
Q Consensus 16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~Gsv~EC~~~~~--~~~~---~~~e--eE~~m~se~~RR~L~~~~yI 88 (131)
+||+||.-....+ ....+++++|.++...|+||++||++..+ +|+| +++| +|++||||++||+|++++||
T Consensus 18 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~rYI 94 (137)
T PLN03221 18 LILAVHFWSVAVS---SQSIEFAGDFPPFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYI 94 (137)
T ss_pred HHHHHHHHhheee---cccccccccccCCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcCCcc
Confidence 3667765433222 12223345688888889999999986543 5666 3333 59999999999999999999
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 032876 89 SYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131 (131)
Q Consensus 89 sYgAL~~d~vPC~~rG~sY~nC~p~~~aNpYsRGCs~itRCrr 131 (131)
||+||++|++||+++|+|||||++++|+|||+|||++||||||
T Consensus 95 SYgALrrd~vPCsrrG~SYynC~~~~pANPY~RGCs~ITRCrR 137 (137)
T PLN03221 95 SYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137 (137)
T ss_pred CHHHhccCCCCCCCCCCCccccCCCCCCCCCCCCcccccccCC
Confidence 9999999999999999999999998999999999999999997
No 2
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=246.19 Aligned_cols=105 Identities=65% Similarity=1.124 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCcccccCCCcccccccccCCCcccchhhhhcccCCCCccccchhhccccchhhhhhhhccccCcccccCC
Q 032876 17 ILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILAMRRYISYGALRRN 96 (131)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~Gsv~EC~~~~~~~~~~~~eeE~~m~se~~RR~L~~~~yIsYgAL~~d 96 (131)
||-||.++... +.+..|+.. +|.++...|+|+++||++. ++|+||+||||++||+|++++||||+||++|
T Consensus 15 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~C~Gsi~EC~~~-------~~e~e~~mdSe~sRR~L~~~rYISYgALrrd 84 (119)
T PLN03222 15 ILTVHFLFAAV-TSQSTGFSG--DFMPIDSKCNGTIAECSLS-------TAEEEFEMDSEINRRILATTKYISYGALRRN 84 (119)
T ss_pred hhHHHHHHHHh-hcccccccc--cccCCCCcCCCCHHHhhcc-------cccchhccccHHHHHHHhhcCeecHHHhcCC
Confidence 44555544422 122234333 7788777899999999963 2356999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 032876 97 SVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131 (131)
Q Consensus 97 ~vPC~~rG~sY~nC~p~~~aNpYsRGCs~itRCrr 131 (131)
++||++||+|||||++++|+|||+|||++||||||
T Consensus 85 ~vPCsrrG~SYynC~~~~~ANPY~RGCs~ITrCrR 119 (119)
T PLN03222 85 TVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 119 (119)
T ss_pred CCCCCCCCCCccccCCCCCCCCCCCCchhhccccC
Confidence 99999999999999998999999999999999997
No 3
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.95 E-value=5.5e-29 Score=169.14 Aligned_cols=65 Identities=69% Similarity=1.187 Sum_probs=62.0
Q ss_pred cchhhccccchhhhhhhhccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 032876 67 LDLEFAMDGEINRRILAMRRYISYGALRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 131 (131)
Q Consensus 67 ~eeE~~m~se~~RR~L~~~~yIsYgAL~~d~vPC~~rG~sY~nC~p~~~aNpYsRGCs~itRCrr 131 (131)
+|+|+.|+||++||+|++++||||+||++|++||.++|.+|++|.+++|+|||+|||++||||||
T Consensus 2 ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr 66 (66)
T PF05498_consen 2 EEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR 66 (66)
T ss_pred hhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence 36789999999999999999999999999999999999999999888999999999999999997
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=86.14 E-value=0.8 Score=33.05 Aligned_cols=20 Identities=35% Similarity=0.255 Sum_probs=9.5
Q ss_pred CCcchhHHHHHHHHHHHHHHH
Q 032876 1 MRASKFSAFSLLLAAIILAVH 21 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~ 21 (131)
|. +|...|+.+++|++|||+
T Consensus 1 Ma-SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHH
Confidence 66 444344444444455554
No 5
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=69.83 E-value=3.5 Score=30.28 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 032876 5 KFSAFSLLLAAIILAV 20 (131)
Q Consensus 5 ~~~~~~~~~~~~~l~~ 20 (131)
||++|++|+++|+|+|
T Consensus 1 RW~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFL 16 (130)
T ss_pred CeeeHHHHHHHHHHHH
Confidence 4555655544333333
No 6
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=53.44 E-value=12 Score=31.48 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhc
Q 032876 4 SKFSAFSLLLAAIILAVHVASS 25 (131)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~ 25 (131)
++|..|||++++|+..-.||+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ 31 (243)
T PF05279_consen 10 SSFFTWFLVLALLGVWSSVAVV 31 (243)
T ss_pred CchHHHHHHHHHHHHHHhhHhh
Confidence 5677777776644444444333
No 7
>COG5510 Predicted small secreted protein [Function unknown]
Probab=24.24 E-value=70 Score=20.61 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCcccccCC
Q 032876 17 ILAVHVASSSSSGVDFDG 34 (131)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~ 34 (131)
+++..+.+++++++.+.|
T Consensus 12 vll~s~llaaCNT~rG~G 29 (44)
T COG5510 12 VLLASTLLAACNTMRGAG 29 (44)
T ss_pred HHHHHHHHHHhhhhhccc
Confidence 666677888899998887
No 8
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=23.99 E-value=68 Score=20.93 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCcccccCC
Q 032876 17 ILAVHVASSSSSGVDFDG 34 (131)
Q Consensus 17 ~l~~~~~~~~~~~~~~~~ 34 (131)
+|+....+++++|+.+.|
T Consensus 12 ~l~~~~~l~~CnTv~G~G 29 (48)
T PRK10081 12 VLVLSTVLTACNTTRGVG 29 (48)
T ss_pred HHHHHHHHhhhhhhhhhh
Confidence 344445577899988877
No 9
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=18.16 E-value=1.2e+02 Score=21.05 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHH
Q 032876 4 SKFSAFSLLLAAIIL 18 (131)
Q Consensus 4 ~~~~~~~~~~~~~~l 18 (131)
+|++.+.|+|+|++.
T Consensus 3 ~Kl~vialLC~aLva 17 (65)
T PF10731_consen 3 SKLIVIALLCVALVA 17 (65)
T ss_pred chhhHHHHHHHHHHH
Confidence 567777777774444
No 10
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=18.10 E-value=1e+02 Score=17.18 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCCccc
Q 032876 109 NCRAGGQANPYSRGCSAIT 127 (131)
Q Consensus 109 nC~p~~~aNpYsRGCs~it 127 (131)
.|.++=.-++-.|.|..|+
T Consensus 5 ~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred eCCCCCcCCCCCCccccCC
Confidence 5777766777778898775
Done!