Query 032876
Match_columns 131
No_of_seqs 157 out of 228
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cz6_A Protein (androctonin); 17.5 37 0.0013 18.6 0.6 14 100-113 10-23 (26)
2 1lgh_A LH II, B800/850, light 10.9 2E+02 0.0068 18.3 2.7 16 13-28 26-41 (56)
3 1e9t_A HITF, intestinal trefoi 10.7 2E+02 0.0067 18.0 2.6 15 97-111 18-32 (59)
4 3arc_H Photosystem II reaction 10.6 3.4E+02 0.012 17.8 3.8 10 27-36 49-58 (65)
5 1un0_C Nucleoporin NUP2; nucle 9.2 1.1E+02 0.0038 19.2 1.0 19 70-88 27-48 (51)
6 1xrd_A LH-1, light-harvesting 8.9 3.1E+02 0.011 17.2 3.0 16 13-28 21-36 (52)
7 1as5_A Conotoxin Y-PIIIE; neur 8.3 3.1E+02 0.011 14.9 2.8 18 107-131 7-24 (26)
8 3u02_A Putative transcription- 6.5 1.3E+02 0.0043 24.1 0.4 12 115-126 46-58 (252)
9 1qle_D Cytochrome AA3, ccytoch 6.4 3.5E+02 0.012 16.1 2.3 17 4-20 24-40 (43)
10 1ijd_A Light-harvesting protei 5.5 4.2E+02 0.014 16.7 2.4 23 8-30 18-40 (53)
No 1
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=17.46 E-value=37 Score=18.62 Aligned_cols=14 Identities=50% Similarity=1.291 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCC
Q 032876 100 CSRRGASYYNCRAG 113 (131)
Q Consensus 100 C~~rG~sY~nC~p~ 113 (131)
|.+||.-||.|..+
T Consensus 10 crrrggcyykctnr 23 (26)
T 1cz6_A 10 CRRRGGCYYKCTNR 23 (26)
T ss_dssp CCSSSCCEEEECCC
T ss_pred HHhcCceEEEccCC
Confidence 77788888888764
No 2
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=10.94 E-value=2e+02 Score=18.31 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCCc
Q 032876 13 LAAIILAVHVASSSSS 28 (131)
Q Consensus 13 ~~~~~l~~~~~~~~~~ 28 (131)
.+.+.|+||.++-+..
T Consensus 26 v~vlAllIH~~lLs~~ 41 (56)
T 1lgh_A 26 ATVVAIAVHAAVLAAP 41 (56)
T ss_dssp HHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4556889998887554
No 3
>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil domain, spectroscopy, cell motility factor; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
Probab=10.73 E-value=2e+02 Score=18.00 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCCCC
Q 032876 97 SVPCSRRGASYYNCR 111 (131)
Q Consensus 97 ~vPC~~rG~sY~nC~ 111 (131)
++.|+.+|.+...|.
T Consensus 18 R~dCG~pgit~~~C~ 32 (59)
T 1e9t_A 18 RVDCGYPHVTPKECN 32 (59)
T ss_dssp CCCCCCSSCCTTTTT
T ss_pred cccCCCCCCCHHHHh
Confidence 444543344443443
No 4
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=10.59 E-value=3.4e+02 Score=17.84 Aligned_cols=10 Identities=30% Similarity=0.518 Sum_probs=5.1
Q ss_pred CcccccCCCc
Q 032876 27 SSGVDFDGLG 36 (131)
Q Consensus 27 ~~~~~~~~~~ 36 (131)
-+++-..|+.
T Consensus 49 NsSvlLdgi~ 58 (65)
T 3arc_H 49 NSTLILDGVN 58 (65)
T ss_dssp TTSSCCTTCC
T ss_pred CcceeecCcc
Confidence 4555555533
No 5
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C
Probab=9.17 E-value=1.1e+02 Score=19.16 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=10.4
Q ss_pred hhccccc---hhhhhhhhcccc
Q 032876 70 EFAMDGE---INRRILAMRRYI 88 (131)
Q Consensus 70 E~~m~se---~~RR~L~~~~yI 88 (131)
.|.+.|+ ..|+|+..++-+
T Consensus 27 ~~~~AS~eVl~~RkI~k~krr~ 48 (51)
T 1un0_C 27 STKVASSAVMNRRKIAMPKRRM 48 (51)
T ss_pred ccccCCHHHHhcCccccccccc
Confidence 3555555 357777555433
No 6
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=8.88 E-value=3.1e+02 Score=17.19 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhcCCc
Q 032876 13 LAAIILAVHVASSSSS 28 (131)
Q Consensus 13 ~~~~~l~~~~~~~~~~ 28 (131)
...++|+||..+-++.
T Consensus 21 l~vlAl~IHfilLSt~ 36 (52)
T 1xrd_A 21 LFVLALLIHFILLSTE 36 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccC
Confidence 4445888888776443
No 7
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=8.33 E-value=3.1e+02 Score=14.93 Aligned_cols=18 Identities=50% Similarity=1.196 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCC
Q 032876 107 YYNCRAGGQANPYSRGCSAITRCRR 131 (131)
Q Consensus 107 Y~nC~p~~~aNpYsRGCs~itRCrr 131 (131)
|..|++ | .||+...-|++
T Consensus 7 yg~cr~------~-pgc~~a~cc~~ 24 (26)
T 1as5_A 7 YGKCRR------Y-PGCSSASCCQR 24 (26)
T ss_dssp TTCCCC------C-TTCTTCCCSCC
T ss_pred cccccc------C-CCcchhhhhcc
Confidence 556655 3 57777777764
No 8
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=6.55 E-value=1.3e+02 Score=24.15 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=5.2
Q ss_pred CCCCC-CCCCCcc
Q 032876 115 QANPY-SRGCSAI 126 (131)
Q Consensus 115 ~aNpY-sRGCs~i 126 (131)
|..|| ||||+..
T Consensus 46 P~iP~KTrgN~a~ 58 (252)
T 3u02_A 46 PNVPYKTRGNGAV 58 (252)
T ss_dssp TTC-----CCEEE
T ss_pred CCCCccCCCCcEE
Confidence 46688 6888753
No 9
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=6.43 E-value=3.5e+02 Score=16.06 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHH
Q 032876 4 SKFSAFSLLLAAIILAV 20 (131)
Q Consensus 4 ~~~~~~~~~~~~~~l~~ 20 (131)
.+|.++++++.++.|+|
T Consensus 24 ~k~gt~~~~~~ll~mai 40 (43)
T 1qle_D 24 ATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 10
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=5.55 E-value=4.2e+02 Score=16.70 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccc
Q 032876 8 AFSLLLAAIILAVHVASSSSSGV 30 (131)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~~~~~~ 30 (131)
.++.-.+.+.++||.++.+..+.
T Consensus 18 l~LgaVav~a~lVH~avl~~TtW 40 (53)
T 1ijd_A 18 LMLGAVAITALLVHAAVLTHTTW 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHHHHHHHhcCch
Done!