Query 032876
Match_columns 131
No_of_seqs 157 out of 228
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 11:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032876.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032876hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omca_ g.3.6.1 (A:) Conotoxin 69.3 0.74 5.4E-05 24.4 0.9 20 99-123 7-26 (27)
2 d1e9ta_ g.16.1.1 (A:) Intestin 15.7 53 0.0039 19.3 2.6 16 97-112 18-33 (59)
3 d1hvwa_ g.3.6.2 (A:) Atracotox 9.5 58 0.0043 16.5 1.2 12 112-123 3-14 (26)
4 d1ce3a_ g.69.1.1 (A:) Multidom 8.3 1.5E+02 0.011 17.3 3.0 29 94-124 2-30 (54)
5 d2v5za2 d.16.1.5 (A:290-401) M 7.9 58 0.0042 19.1 0.9 11 115-125 100-110 (112)
6 d2dw4a3 d.16.1.5 (A:655-763) L 7.4 70 0.0051 18.4 1.1 10 115-124 98-107 (109)
7 d1qled_ f.23.8.1 (D:) Bacteria 6.5 82 0.006 17.8 1.0 9 17-25 33-41 (43)
8 d1m56d_ f.23.8.1 (D:) Bacteria 6.3 95 0.0069 17.5 1.2 9 17-25 32-40 (42)
9 d1xrda1 f.3.1.1 (A:1-52) Light 6.0 1.5E+02 0.011 17.3 2.0 15 13-27 21-35 (52)
10 d1b5qa2 d.16.1.5 (A:294-405) P 5.4 93 0.0068 18.0 0.8 9 115-123 101-109 (112)
No 1
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=69.33 E-value=0.74 Score=24.43 Aligned_cols=20 Identities=50% Similarity=1.180 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q 032876 99 PCSRRGASYYNCRAGGQANPYSRGC 123 (131)
Q Consensus 99 PC~~rG~sY~nC~p~~~aNpYsRGC 123 (131)
.|++ .|| ||.. .+|||+.-|
T Consensus 7 scsp--tsy-nccr--scnpytkrc 26 (27)
T d1omca_ 7 SCSP--TSY-NCCR--SCNPYTKRC 26 (27)
T ss_dssp BCCT--TTT-CBSS--CEETTTTEE
T ss_pred cCCC--ccc-chhc--ccCcccccc
Confidence 3776 444 5554 389998655
No 2
>d1e9ta_ g.16.1.1 (A:) Intestinal trefoil factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.71 E-value=53 Score=19.30 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCCCCC
Q 032876 97 SVPCSRRGASYYNCRA 112 (131)
Q Consensus 97 ~vPC~~rG~sY~nC~p 112 (131)
++.|.+.|.+...|..
T Consensus 18 R~dCg~~git~~~C~~ 33 (59)
T d1e9ta_ 18 RVDCGYPHVTPKECNN 33 (59)
T ss_dssp CCCCCCSSCCTTTTTT
T ss_pred cccCCCCCCCHHHHhh
Confidence 4556665555555543
No 3
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=9.55 E-value=58 Score=16.48 Aligned_cols=12 Identities=42% Similarity=1.030 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCC
Q 032876 112 AGGQANPYSRGC 123 (131)
Q Consensus 112 p~~~aNpYsRGC 123 (131)
|.++--||+..|
T Consensus 3 psgqpcpynenc 14 (26)
T d1hvwa_ 3 PSGQPCPYNENC 14 (26)
T ss_dssp CTTSBCSSTTSB
T ss_pred CCCCcCCCCccc
Confidence 333344555444
No 4
>d1ce3a_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=8.29 E-value=1.5e+02 Score=17.31 Aligned_cols=29 Identities=24% Similarity=0.490 Sum_probs=16.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 032876 94 RRNSVPCSRRGASYYNCRAGGQANPYSRGCS 124 (131)
Q Consensus 94 ~~d~vPC~~rG~sY~nC~p~~~aNpYsRGCs 124 (131)
|....-|++|-+ |.-|.. -...++++.|.
T Consensus 2 KaC~~~CDprIa-y~iCPr-Se~k~~~~iCt 30 (54)
T d1ce3a_ 2 KACTLNCDPRIA-YGVCPR-SEEKKNDRICT 30 (54)
T ss_dssp CCCCSSCCTTCC-EEECSS-CCCCSCCCCSC
T ss_pred CcCccccCCcee-eeECCC-ccccccCCccc
Confidence 333444777644 667754 34555667664
No 5
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.92 E-value=58 Score=19.12 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=8.6
Q ss_pred CCCCCCCCCCc
Q 032876 115 QANPYSRGCSA 125 (131)
Q Consensus 115 ~aNpYsRGCs~ 125 (131)
..+||+||+-.
T Consensus 100 ~~dp~~~GsYs 110 (112)
T d2v5za2 100 CEEQYSGGCYT 110 (112)
T ss_dssp GGCTTTCSSSC
T ss_pred CCCCccCcccc
Confidence 37899999854
No 6
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.44 E-value=70 Score=18.44 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=8.3
Q ss_pred CCCCCCCCCC
Q 032876 115 QANPYSRGCS 124 (131)
Q Consensus 115 ~aNpYsRGCs 124 (131)
..+||+||+-
T Consensus 98 ~~dp~~~GsY 107 (109)
T d2dw4a3 98 RADPWARGSY 107 (109)
T ss_dssp TTCTTTSSSC
T ss_pred CCCCccCEec
Confidence 5789999984
No 7
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=6.52 E-value=82 Score=17.80 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=4.7
Q ss_pred HHHHHHHhc
Q 032876 17 ILAVHVASS 25 (131)
Q Consensus 17 ~l~~~~~~~ 25 (131)
+++|.+|+.
T Consensus 33 ~~liflAi~ 41 (43)
T d1qled_ 33 AVLVFLALA 41 (43)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 455555544
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.27 E-value=95 Score=17.45 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=4.4
Q ss_pred HHHHHHHhc
Q 032876 17 ILAVHVASS 25 (131)
Q Consensus 17 ~l~~~~~~~ 25 (131)
+++|.+|+.
T Consensus 32 ~~liflAi~ 40 (42)
T d1m56d_ 32 AALIFLALA 40 (42)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 445555543
No 9
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=5.99 E-value=1.5e+02 Score=17.26 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhcCC
Q 032876 13 LAAIILAVHVASSSS 27 (131)
Q Consensus 13 ~~~~~l~~~~~~~~~ 27 (131)
...++++||..+-++
T Consensus 21 L~~LAl~IHfiLLSt 35 (52)
T d1xrda1 21 LFVLALLIHFILLST 35 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 344578888776644
No 10
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=5.40 E-value=93 Score=18.03 Aligned_cols=9 Identities=11% Similarity=0.434 Sum_probs=7.6
Q ss_pred CCCCCCCCC
Q 032876 115 QANPYSRGC 123 (131)
Q Consensus 115 ~aNpYsRGC 123 (131)
..+||+||+
T Consensus 101 ~~dp~~~Gs 109 (112)
T d1b5qa2 101 WSDRFYKGT 109 (112)
T ss_dssp TTCTTTSSS
T ss_pred CCCCCcccc
Confidence 478999997
Done!