Query 032878
Match_columns 131
No_of_seqs 104 out of 722
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.9 4.2E-27 9.1E-32 173.9 10.7 118 10-129 3-121 (242)
2 KOG0439 VAMP-associated protei 99.9 8.5E-26 1.8E-30 169.6 14.5 125 4-130 3-130 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 3.5E-25 7.5E-30 149.2 10.7 91 10-101 2-93 (109)
4 PF14874 PapD-like: Flagellar- 98.9 2.8E-08 6E-13 66.0 10.8 70 8-77 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.8 0.00047 1E-08 47.0 10.4 109 10-131 2-119 (122)
6 PRK09918 putative fimbrial cha 96.4 0.067 1.4E-06 40.7 10.6 66 8-76 24-94 (230)
7 PF14646 MYCBPAP: MYCBP-associ 96.4 0.029 6.3E-07 46.3 9.1 67 12-78 233-313 (426)
8 PRK09926 putative chaperone pr 96.2 0.09 1.9E-06 40.5 10.2 87 8-99 25-121 (246)
9 PRK15249 fimbrial chaperone pr 96.2 0.096 2.1E-06 40.5 10.3 87 8-99 28-125 (253)
10 PF07610 DUF1573: Protein of u 95.9 0.051 1.1E-06 30.9 5.9 43 31-74 2-45 (45)
11 PRK15299 fimbrial chaperone pr 95.8 0.61 1.3E-05 35.4 13.8 86 8-99 22-115 (227)
12 PRK15246 fimbrial assembly cha 95.7 0.21 4.6E-06 38.2 10.2 86 9-99 11-106 (233)
13 PRK15295 fimbrial assembly cha 95.6 0.25 5.5E-06 37.6 10.3 86 8-99 19-111 (226)
14 PRK15211 fimbrial chaperone pr 95.3 0.34 7.4E-06 37.0 10.2 85 9-99 23-113 (229)
15 PRK11385 putativi pili assembl 95.3 0.29 6.4E-06 37.5 9.8 87 8-99 26-124 (236)
16 PF11614 FixG_C: IG-like fold 94.6 0.17 3.6E-06 34.2 6.3 51 27-77 33-85 (118)
17 PRK15208 long polar fimbrial c 94.5 0.65 1.4E-05 35.3 9.9 86 8-99 21-112 (228)
18 PRK15192 fimbrial chaperone Bc 94.5 1.3 2.8E-05 34.0 11.4 84 8-99 22-119 (234)
19 PRK15290 lfpB fimbrial chapero 94.0 2.2 4.8E-05 32.9 14.2 86 9-99 38-131 (243)
20 PRK15188 fimbrial chaperone pr 93.9 1.1 2.3E-05 34.3 10.0 86 8-99 27-118 (228)
21 COG3121 FimC P pilus assembly 93.9 2.2 4.8E-05 32.6 13.8 87 7-99 26-119 (235)
22 PRK15254 fimbrial chaperone pr 93.6 1.5 3.3E-05 33.7 10.3 87 8-99 16-110 (239)
23 PRK15195 fimbrial chaperone pr 93.3 1.8 3.9E-05 33.0 10.3 86 8-99 25-116 (229)
24 PRK15218 fimbrial chaperone pr 92.8 3.4 7.3E-05 31.5 11.7 84 10-99 20-113 (226)
25 PF06280 DUF1034: Fn3-like dom 92.2 0.54 1.2E-05 31.4 5.6 53 25-77 8-81 (112)
26 PRK15224 pili assembly chapero 92.1 4.4 9.5E-05 31.1 11.5 82 10-99 30-118 (237)
27 PRK15233 putative fimbrial cha 91.6 3.9 8.5E-05 31.6 10.3 82 10-99 42-130 (246)
28 PF06030 DUF916: Bacterial pro 90.7 3.4 7.4E-05 28.4 8.3 30 17-46 19-48 (121)
29 PRK15274 putative periplasmic 90.5 7 0.00015 30.4 12.0 85 10-99 28-120 (257)
30 PRK15253 putative fimbrial ass 90.0 7.3 0.00016 30.0 11.7 85 9-99 34-128 (242)
31 PF03173 CHB_HEX: Putative car 90.0 0.68 1.5E-05 33.7 4.6 35 43-77 69-105 (164)
32 PF00927 Transglut_C: Transglu 88.2 3.3 7.1E-05 27.2 6.6 55 23-77 13-77 (107)
33 PRK15308 putative fimbrial pro 88.1 10 0.00022 29.1 11.8 86 7-100 15-118 (234)
34 PF10633 NPCBM_assoc: NPCBM-as 87.3 1 2.2E-05 28.1 3.5 55 24-78 4-62 (78)
35 PF05506 DUF756: Domain of unk 86.3 4 8.6E-05 26.1 6.0 45 28-75 21-66 (89)
36 PRK15285 putative fimbrial cha 85.6 15 0.00032 28.5 12.0 85 10-99 27-119 (250)
37 smart00809 Alpha_adaptinC2 Ada 85.2 6.6 0.00014 25.4 6.8 53 25-77 18-74 (104)
38 PF04744 Monooxygenase_B: Mono 83.3 6.3 0.00014 32.3 7.1 65 10-76 249-335 (381)
39 PF05753 TRAP_beta: Translocon 83.2 15 0.00032 27.0 8.5 55 22-77 35-98 (181)
40 PF11611 DUF4352: Domain of un 80.0 12 0.00026 24.6 6.7 53 24-76 35-101 (123)
41 TIGR03079 CH4_NH3mon_ox_B meth 77.6 9.1 0.0002 31.5 6.2 55 23-77 280-355 (399)
42 TIGR02745 ccoG_rdxA_fixG cytoc 74.4 51 0.0011 27.6 10.8 69 26-96 347-417 (434)
43 PF12690 BsuPI: Intracellular 70.5 25 0.00054 22.4 6.5 21 28-48 3-23 (82)
44 PF07233 DUF1425: Protein of u 66.7 32 0.0007 22.3 6.5 49 24-72 23-78 (94)
45 PF00553 CBM_2: Cellulose bind 66.4 10 0.00022 24.9 3.5 51 27-77 15-85 (101)
46 PF02883 Alpha_adaptinC2: Adap 66.1 35 0.00075 22.4 7.3 81 16-96 12-100 (115)
47 PF07705 CARDB: CARDB; InterP 62.6 35 0.00075 21.2 6.9 55 23-77 17-72 (101)
48 smart00637 CBD_II CBD_II domai 57.0 48 0.001 21.0 5.8 24 51-74 50-75 (92)
49 PF13473 Cupredoxin_1: Cupredo 55.2 55 0.0012 21.2 7.9 51 11-73 31-81 (104)
50 PF13205 Big_5: Bacterial Ig-l 52.4 58 0.0013 20.6 6.7 56 16-74 26-84 (107)
51 COG1470 Predicted membrane pro 51.4 1.6E+02 0.0034 25.3 10.9 87 8-98 380-470 (513)
52 PF06483 ChiC: Chitinase C; I 49.5 24 0.00051 26.1 3.3 28 39-77 116-144 (180)
53 PF09640 DUF2027: Domain of un 48.7 36 0.00079 24.7 4.1 67 27-100 18-84 (162)
54 PF02753 PapD_C: Pili assembly 48.7 18 0.0004 21.6 2.3 43 31-73 1-44 (68)
55 COG3121 FimC P pilus assembly 44.5 78 0.0017 24.1 5.6 43 29-73 165-209 (235)
56 PF11175 DUF2961: Protein of u 43.6 75 0.0016 24.4 5.4 41 5-47 37-83 (237)
57 PRK15249 fimbrial chaperone pr 38.9 87 0.0019 24.1 5.2 42 30-72 177-219 (253)
58 cd00407 Urease_beta Urease bet 37.7 75 0.0016 21.3 4.0 63 12-77 8-86 (101)
59 PRK13202 ureB urease subunit b 37.1 66 0.0014 21.7 3.7 64 12-77 8-87 (104)
60 TIGR00192 urease_beta urease, 35.9 76 0.0016 21.3 3.8 63 12-77 8-86 (101)
61 PF10342 GPI-anchored: Ser-Thr 35.2 1.1E+02 0.0024 18.8 7.2 59 15-74 15-78 (93)
62 PRK13203 ureB urease subunit b 33.7 86 0.0019 21.1 3.8 63 12-77 8-86 (102)
63 PRK09926 putative chaperone pr 33.2 1.7E+02 0.0036 22.4 5.9 43 29-73 173-217 (246)
64 PF06586 TraK: TraK protein; 32.7 1.6E+02 0.0034 22.0 5.6 47 26-72 187-234 (234)
65 KOG1769 Ubiquitin-like protein 32.4 1.1E+02 0.0024 20.4 4.2 25 27-51 19-43 (99)
66 COG0832 UreB Urea amidohydrola 30.6 1E+02 0.0023 20.7 3.8 26 14-42 10-35 (106)
67 smart00605 CW CW domain. 29.9 85 0.0018 20.0 3.3 22 29-50 57-79 (94)
68 TIGR03396 PC_PLC phospholipase 29.0 1.8E+02 0.0039 26.0 6.0 41 29-76 607-652 (690)
69 TIGR03437 Soli_cterm Solibacte 29.0 2.5E+02 0.0055 21.2 6.1 53 6-58 42-97 (215)
70 PRK13204 ureB urease subunit b 28.4 1.2E+02 0.0025 22.0 3.9 64 11-77 30-109 (159)
71 PF14796 AP3B1_C: Clathrin-ada 28.2 2.2E+02 0.0048 20.2 5.7 46 27-73 87-137 (145)
72 PF11906 DUF3426: Protein of u 27.9 1.6E+02 0.0035 20.2 4.7 18 59-76 119-136 (149)
73 KOG1219 Uncharacterized conser 27.4 5E+02 0.011 27.8 8.8 29 35-63 1087-1116(4289)
74 PF08402 TOBE_2: TOBE domain; 27.4 1.3E+02 0.0028 17.3 6.6 64 10-73 1-68 (75)
75 PF14310 Fn3-like: Fibronectin 27.3 54 0.0012 19.8 1.9 16 62-77 29-44 (71)
76 PF00699 Urease_beta: Urease b 27.1 68 0.0015 21.5 2.4 63 12-77 7-85 (100)
77 PRK15246 fimbrial assembly cha 27.1 1.9E+02 0.0041 22.0 5.3 39 30-72 154-192 (233)
78 PRK13201 ureB urease subunit b 26.1 1.3E+02 0.0028 21.3 3.8 63 12-77 8-86 (136)
79 PF14054 DUF4249: Domain of un 25.9 2.1E+02 0.0046 21.7 5.5 49 27-76 61-110 (298)
80 PRK13198 ureB urease subunit b 25.4 1.4E+02 0.003 21.6 3.9 51 27-77 48-114 (158)
81 PRK13205 ureB urease subunit b 25.2 1.3E+02 0.0028 21.8 3.7 63 12-77 8-86 (162)
82 PRK15308 putative fimbrial pro 24.2 1.4E+02 0.0031 22.8 4.1 58 9-71 141-198 (234)
83 PF08277 PAN_3: PAN-like domai 24.2 1.2E+02 0.0025 17.9 3.0 14 32-45 58-71 (71)
84 PF07703 A2M_N_2: Alpha-2-macr 22.5 1.1E+02 0.0024 20.3 3.0 34 41-74 85-118 (136)
85 PF13620 CarboxypepD_reg: Carb 22.3 1.3E+02 0.0028 17.9 3.0 43 28-76 16-58 (82)
86 COG3565 Predicted dioxygenase 22.1 2.1E+02 0.0045 19.9 4.1 32 12-45 97-128 (138)
87 PF11386 VERL: Vitelline envel 21.1 59 0.0013 20.6 1.2 26 12-37 23-48 (78)
88 smart00609 VIT Vault protein I 20.9 2.5E+02 0.0053 19.3 4.5 36 37-75 92-129 (130)
89 PF03944 Endotoxin_C: delta en 20.4 1.1E+02 0.0025 21.1 2.7 30 29-58 28-59 (143)
90 cd09030 DUF1425 Putative perip 20.4 2.5E+02 0.0055 18.0 5.9 48 25-72 32-86 (101)
91 PF08487 VIT: Vault protein in 20.2 1.5E+02 0.0032 19.7 3.2 33 40-75 83-117 (118)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.94 E-value=4.2e-27 Score=173.90 Aligned_cols=118 Identities=37% Similarity=0.597 Sum_probs=105.0
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCC-CCCCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP-PDMQCKD 88 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~-~~~~~~d 88 (131)
|+++|.. .|..|+....++.+.|.|++..+|+||||||+|..|+|||+.|.|+|++++.|.|+|+++.+.| ++.+|+|
T Consensus 3 veisp~~-~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQT-TFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCce-EEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 6777765 4777888888999999999999999999999999999999999999999999999999998877 7899999
Q ss_pred EEEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEEEe
Q 032878 89 KFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLY 129 (131)
Q Consensus 89 kF~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~~~ 129 (131)
|||||+...+......++ .++|....+..|.++||||.|.
T Consensus 82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvys 121 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYS 121 (242)
T ss_pred eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEee
Confidence 999999999876554555 4788888777899999999985
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.5e-26 Score=169.59 Aligned_cols=125 Identities=42% Similarity=0.600 Sum_probs=110.2
Q ss_pred CCCCccEEEcC-CeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCC
Q 032878 4 DGGNQLISVHP-EELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (131)
Q Consensus 4 ~~~~~~l~v~P-~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~ 82 (131)
.+....|.++| .+|.|..+..+...+.|+|+|++..++|||||||+|.+|+|+|+.|+|.||+++.|.|.+++....|.
T Consensus 3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~ 82 (218)
T KOG0439|consen 3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPP 82 (218)
T ss_pred ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCch
Confidence 45668899999 59999999988889999999999999999999999999999999999999999999999999766688
Q ss_pred CCCCCCEEEEEEEEcCCCCCCCCCCcchhcccC--CCceeEEEeEEEEec
Q 032878 83 DMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDS--GKTIEECKLRVVLYS 130 (131)
Q Consensus 83 ~~~~~dkF~V~~~~~~~~~~~~~~~~~~f~~~~--~~~i~~~kL~v~~~~ 130 (131)
+++++|||+||++.++.+ +..+. .++|.... +..+.+.+++|.|+.
T Consensus 83 d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~ 130 (218)
T KOG0439|consen 83 DFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVA 130 (218)
T ss_pred hhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeC
Confidence 888999999999999976 33333 35677665 788999999999985
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.93 E-value=3.5e-25 Score=149.21 Aligned_cols=91 Identities=40% Similarity=0.686 Sum_probs=76.5
Q ss_pred EEEcCC-eEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCCCCCC
Q 032878 10 ISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKD 88 (131)
Q Consensus 10 l~v~P~-~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~d 88 (131)
|.|+|. .|.|.+++++...+.|+|+|.++++||||||||++.+|+|+|+.|+|+||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 689997 89999999889999999999999999999999999999999999999999999999999997544432 2499
Q ss_pred EEEEEEEEcCCCC
Q 032878 89 KFLLQSTIVPSNT 101 (131)
Q Consensus 89 kF~V~~~~~~~~~ 101 (131)
||+|+++.++++.
T Consensus 81 kf~I~~~~~~~~~ 93 (109)
T PF00635_consen 81 KFLIQSIVVPDNA 93 (109)
T ss_dssp EEEEEEEEE-TT-
T ss_pred EEEEEEEEcCCCc
Confidence 9999999998765
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.93 E-value=2.8e-08 Score=65.98 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=61.2
Q ss_pred ccEEEcCCeEEEecc-CCceeEEEEEEecCCCCeEEEEEecCC--CCeEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 8 QLISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTS--PKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~-~~~~~~~~l~l~N~s~~~vaFKVktT~--p~~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
+.|.++|.+|.|-.- .+......|+|+|.|..+..|+|+.-. ...|.|.|..|.|+||++..+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 468999999999865 456778899999999999999997543 5789999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.82 E-value=0.00047 Score=47.03 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=71.4
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCC---C------CeEEEcCCeeEECCCCeEEEEEEecCCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS---P------KKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~---p------~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~ 80 (131)
|.++|..+.|.... ....++|+|.++.++.+.+.... . ..|.|.|+.-.|+||++..|.| +... ..
T Consensus 2 i~i~~trii~~~~~---~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNESQ---RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETTS---SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCCC---CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 67899999988632 37899999999999999997654 1 2699999999999999999999 4433 23
Q ss_pred CCCCCCCCEEEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEEEecC
Q 032878 81 PPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYSA 131 (131)
Q Consensus 81 ~~~~~~~dkF~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~~~~~ 131 (131)
+.+....-++.+..++... +..+ .+..-.....+.+++-|-|+
T Consensus 77 ~~~~E~~yrl~~~~iP~~~--~~~~------~~~~v~i~~~~~i~v~~rP~ 119 (122)
T PF00345_consen 77 PIDRESLYRLSFREIPPSE--AENE------SKNGVQIALRYSIPVFYRPA 119 (122)
T ss_dssp -SSS-EEEEEEEEEEESCC--TTSS------SSSEEEEEEEEEEEEEEEET
T ss_pred CCCceEEEEEEEEEEeccc--cccc------ccceEEEEEEEEEEEEECch
Confidence 3332233344444444433 1000 01111245577788777764
No 6
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=96.44 E-value=0.067 Score=40.74 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=52.0
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCC-----CeEEEcCCeeEECCCCeEEEEEEecC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP-----KKYFVRPNTGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p-----~~y~V~P~~G~i~P~~s~~I~I~~~~ 76 (131)
--|.++|..+.|.... ....++|+|.++.++.-....... .-|.|.|+.-.|+||+...|.|.+..
T Consensus 24 a~v~l~~tRvi~~~~~---~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~ 94 (230)
T PRK09918 24 AGMVPETSVVIVEESD---GEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS 94 (230)
T ss_pred eeEEEccEEEEEECCC---CeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC
Confidence 3477888888888643 368999999999887766654322 35999999999999999999998764
No 7
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=96.41 E-value=0.029 Score=46.31 Aligned_cols=67 Identities=12% Similarity=0.261 Sum_probs=56.2
Q ss_pred EcCC-eEEEeccCCceeEEEEE-EecCCCCeEEEEEecCC------------CCeEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 12 VHPE-ELKFIFELEKQGFCDLK-VINNTEHHVAFKVKTTS------------PKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 12 v~P~-~l~F~~~~~~~~~~~l~-l~N~s~~~vaFKVktT~------------p~~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
+.+. .|.|....+......|. |.|.|..-|-|..+--. ...|......|+|.||++..+.|++++.
T Consensus 233 ~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~ 312 (426)
T PF14646_consen 233 VSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSR 312 (426)
T ss_pred cCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCC
Confidence 4444 78999887777777777 99999999999987433 4679999999999999999999999986
Q ss_pred C
Q 032878 78 R 78 (131)
Q Consensus 78 ~ 78 (131)
.
T Consensus 313 ~ 313 (426)
T PF14646_consen 313 K 313 (426)
T ss_pred C
Confidence 3
No 8
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=96.18 E-value=0.09 Score=40.45 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=61.2
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCC----------eEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPK----------KYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~----------~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
--|.++|..+.|+... ....++|.|.++.++.-.......+ -|.|.|+.--|+||+...|.|.....
T Consensus 25 A~i~l~~TRvI~~~~~---~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 25 ADIVISGTRIIYKSDQ---KDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred eeEEeCceEEEEeCCC---ceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCC
Confidence 4578888888888643 3688999999998877776654322 39999999999999999999997753
Q ss_pred CCCCCCCCCCCEEEEEEEEcCC
Q 032878 78 RESPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 78 ~~~~~~~~~~dkF~V~~~~~~~ 99 (131)
...|.|.+ --|-+...++|+
T Consensus 102 ~~lP~DrE--Slf~lnv~eIP~ 121 (246)
T PRK09926 102 TALPKDRE--SVFWFNVLEVPP 121 (246)
T ss_pred CCCCCCce--EEEEEEeeecCC
Confidence 12444422 224444444443
No 9
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=96.16 E-value=0.096 Score=40.49 Aligned_cols=87 Identities=15% Similarity=0.225 Sum_probs=59.3
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCC-----------CeEEEcCCeeEECCCCeEEEEEEecC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP-----------KKYFVRPNTGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p-----------~~y~V~P~~G~i~P~~s~~I~I~~~~ 76 (131)
--|.++|..+.|+... ....|+|.|.++.++.-...+... .-|.|.|+.--|+||+...|.|....
T Consensus 28 A~l~l~~TRviy~~~~---~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 28 ASVTILGSRIIYPSTA---SSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred eEEEeCceEEEEeCCC---cceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcC
Confidence 4578889888988543 358899999998876655543221 13999999999999999999999875
Q ss_pred CCCCCCCCCCCCEEEEEEEEcCC
Q 032878 77 QRESPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 77 ~~~~~~~~~~~dkF~V~~~~~~~ 99 (131)
....|.|.+ --|-+...++|+
T Consensus 105 ~~~lP~DRE--Slf~lnv~eIP~ 125 (253)
T PRK15249 105 TKKLPQDRE--SVFWFNVLQVPP 125 (253)
T ss_pred CCCCCCCce--EEEEEEeeecCC
Confidence 223444422 223344444443
No 10
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=95.91 E-value=0.051 Score=30.91 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=35.4
Q ss_pred EEEecCCCCeEE-EEEecCCCCeEEEcCCeeEECCCCeEEEEEEe
Q 032878 31 LKVINNTEHHVA-FKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (131)
Q Consensus 31 l~l~N~s~~~va-FKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~ 74 (131)
.+++|.++.++. .+|+++ =+-..+..+...|+||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEEC
Confidence 578999987765 566665 5888999999999999999999874
No 11
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=95.76 E-value=0.61 Score=35.40 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=60.1
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCC--------CCeEEEcCCeeEECCCCeEEEEEEecCCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS--------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRE 79 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~--------p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~ 79 (131)
--|.++|..+.|.... ....|+|.|.++.++.-...... ..-|.|.|+.--|+||+...|.|..... .
T Consensus 22 a~i~l~~TRvi~~~~~---~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~ 97 (227)
T PRK15299 22 AGINIGTTRVIFHGDA---KDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-N 97 (227)
T ss_pred eeEEECceEEEEeCCC---cEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-C
Confidence 4578888888888653 36889999999887655554322 1239999999999999999999987753 2
Q ss_pred CCCCCCCCCEEEEEEEEcCC
Q 032878 80 SPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 80 ~~~~~~~~dkF~V~~~~~~~ 99 (131)
.|.|. ..-|-+...++|+
T Consensus 98 lP~Dr--Eslf~lnv~eIP~ 115 (227)
T PRK15299 98 LPEDR--ESLYWLDIKSIPS 115 (227)
T ss_pred CCCcc--eEEEEEEeEecCC
Confidence 44442 2334455555554
No 12
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=95.65 E-value=0.21 Score=38.19 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=59.2
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCC----------CeEEEcCCeeEECCCCeEEEEEEecCCC
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQR 78 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p----------~~y~V~P~~G~i~P~~s~~I~I~~~~~~ 78 (131)
-|.+++..+.|+... ....++|.|.++.+..-....... .-|.|.|+.--|+||+...+.|......
T Consensus 11 ~v~l~~TRvI~~~~~---~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFASDD---VAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcCCC---ceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 477888888888642 368899999998875444432211 1499999999999999999999987532
Q ss_pred CCCCCCCCCCEEEEEEEEcCC
Q 032878 79 ESPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 79 ~~~~~~~~~dkF~V~~~~~~~ 99 (131)
..|.|. .--|-+....+|+
T Consensus 88 ~LP~DR--ESlf~lnv~~IP~ 106 (233)
T PRK15246 88 QLATDR--ESLFWLNIYQIPP 106 (233)
T ss_pred CCCCCc--eEEEEEEEEEcCC
Confidence 345442 2334455555554
No 13
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=95.59 E-value=0.25 Score=37.55 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=57.9
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCC-------CCeEEEcCCeeEECCCCeEEEEEEecCCCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~-------p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~ 80 (131)
--|.+++..+.|.... ....++|.|.++.+..-...... ..-|.|.|+.--|+||+...|.|..... ..
T Consensus 19 A~i~l~~TRvI~~~~~---~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~L 94 (226)
T PRK15295 19 ASIVVGGTRLVFDGNN---DESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PL 94 (226)
T ss_pred ccEEeCceEEEEeCCC---ceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CC
Confidence 3477888888888643 36889999999886443332221 1249999999999999999999987653 23
Q ss_pred CCCCCCCCEEEEEEEEcCC
Q 032878 81 PPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 81 ~~~~~~~dkF~V~~~~~~~ 99 (131)
|.|. .--|-+....+|+
T Consensus 95 P~Dr--Eslf~lnv~~IP~ 111 (226)
T PRK15295 95 PADR--ESMYWLNIKGIPS 111 (226)
T ss_pred CCCc--eEEEEEEEEEcCC
Confidence 4442 2334444445554
No 14
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=95.29 E-value=0.34 Score=37.00 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=58.2
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCC------CCeEEEcCCeeEECCCCeEEEEEEecCCCCCCC
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~------p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~ 82 (131)
-|.+++..+.|+... ....++|.|.++.+..-...... ..-|.|.|+.--|+||+...|.|..... ..|.
T Consensus 23 ~v~l~~TRvIy~~~~---~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~ 98 (229)
T PRK15211 23 AFVLNGTRFIYDEGR---KNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPK 98 (229)
T ss_pred EEEECceEEEEcCCC---ceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 477788888888533 36899999999887544433211 1249999999999999999999998753 3454
Q ss_pred CCCCCCEEEEEEEEcCC
Q 032878 83 DMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 83 ~~~~~dkF~V~~~~~~~ 99 (131)
|. .--|-+....+|+
T Consensus 99 DR--ESlf~lnv~~IP~ 113 (229)
T PRK15211 99 DR--ESLFWLNVQEIPP 113 (229)
T ss_pred Cc--eEEEEEEEEEcCC
Confidence 43 2334444445554
No 15
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=95.29 E-value=0.29 Score=37.51 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=58.7
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecC------------CCCeEEEcCCeeEECCCCeEEEEEEec
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTT------------SPKKYFVRPNTGVVQPWDSCIIRVTLQ 75 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT------------~p~~y~V~P~~G~i~P~~s~~I~I~~~ 75 (131)
--|.+++..+.|+... ....++|.|.++.+..=..+.. ...-|.|.|+.--|+||+...+.|...
T Consensus 26 A~v~l~~TRvIy~~~~---~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~ 102 (236)
T PRK11385 26 AGVVVGGTRFIFPADR---ESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRT 102 (236)
T ss_pred eeEEeCceEEEEcCCC---ceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 4577788888888533 3688999999998744333211 113499999999999999999999987
Q ss_pred CCCCCCCCCCCCCEEEEEEEEcCC
Q 032878 76 AQRESPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 76 ~~~~~~~~~~~~dkF~V~~~~~~~ 99 (131)
.....|.|. ..-|-+....+|+
T Consensus 103 ~~~~LP~DR--ESlf~lnv~~IPp 124 (236)
T PRK11385 103 ESDILPVDR--ETLFELSIASVPS 124 (236)
T ss_pred CCCCCCCCc--eEEEEEEEEecCC
Confidence 532345442 2344444445554
No 16
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=94.62 E-value=0.17 Score=34.21 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=35.7
Q ss_pred eEEEEEEecCCCCeEEEEEecCCCCeEEE-cCCee-EECCCCeEEEEEEecCC
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFV-RPNTG-VVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p~~y~V-~P~~G-~i~P~~s~~I~I~~~~~ 77 (131)
=...++|.|.+.++..|.|+...+..+.+ .|... -|+||++..+.+.+...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEEC
Confidence 34679999999999999999988778888 66454 59999999988887664
No 17
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=94.54 E-value=0.65 Score=35.32 Aligned_cols=86 Identities=10% Similarity=0.192 Sum_probs=56.0
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCC-eEEEEEec-CC-C---CeEEEcCCeeEECCCCeEEEEEEecCCCCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKT-TS-P---KKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~-~vaFKVkt-T~-p---~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~ 81 (131)
--|.++|..+.|.... ....++|.|.++. +....... .. . .-|.|.|+.--|+||+...|.|..... ..|
T Consensus 21 agv~l~~TRvI~~~~~---~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP 96 (228)
T PRK15208 21 GGVALSSTRVIYDGSK---KEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLP 96 (228)
T ss_pred ccEEeCceEEEEeCCC---ceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCC
Confidence 4588888888888643 3688999999853 43332222 11 1 129999999999999999999987643 234
Q ss_pred CCCCCCCEEEEEEEEcCC
Q 032878 82 PDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 82 ~~~~~~dkF~V~~~~~~~ 99 (131)
.|.+ --|-+-.-++|+
T Consensus 97 ~DrE--Slf~lnv~eIP~ 112 (228)
T PRK15208 97 QDRE--SVYWINVKAIPA 112 (228)
T ss_pred CCee--EEEEEEEEEcCC
Confidence 4422 234444444443
No 18
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=94.49 E-value=1.3 Score=33.99 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=58.5
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecC----------C----CCeEEEcCCeeEECCCCeEEEEEE
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTT----------S----PKKYFVRPNTGVVQPWDSCIIRVT 73 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT----------~----p~~y~V~P~~G~i~P~~s~~I~I~ 73 (131)
--|.++...+.|+... ....++|.|.++.+ |-|++. . ..-|.|.|+.--|+||+...+.|.
T Consensus 22 Agi~l~~TRvIy~~~~---k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~ 96 (234)
T PRK15192 22 AGVVIGGTRFIYHAGA---PALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVV 96 (234)
T ss_pred eeEEeCceEEEEcCCC---ceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEE
Confidence 3467777788888632 36889999999886 666652 0 113999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCEEEEEEEEcCC
Q 032878 74 LQAQRESPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 74 ~~~~~~~~~~~~~~dkF~V~~~~~~~ 99 (131)
.... ..|.|. .--|-+....+|+
T Consensus 97 ~~~~-~LP~DR--ESlf~lnv~~IPp 119 (234)
T PRK15192 97 YTGA-PLPADR--ESLFTLSIAAIPS 119 (234)
T ss_pred ECCC-CCCCcc--eEEEEEEEEecCC
Confidence 8753 345442 2344455555554
No 19
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=93.99 E-value=2.2 Score=32.86 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=59.6
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCC-CeEEEEEecCC---C----CeEEEcCCeeEECCCCeEEEEEEecCCCCC
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS---P----KKYFVRPNTGVVQPWDSCIIRVTLQAQRES 80 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~-~~vaFKVktT~---p----~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~ 80 (131)
-|.+++..+.|+... ....++|+|.++ .+..-.....+ . .-|.|.|+.--|+||+...+.|........
T Consensus 38 gv~l~~TRvIy~~~~---~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~L 114 (243)
T PRK15290 38 GVVIGGTRVVYLSNN---PDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSL 114 (243)
T ss_pred eEEECceEEEEeCCC---ceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCC
Confidence 477888888888633 358999999985 56666665441 1 139999999999999999999998753234
Q ss_pred CCCCCCCCEEEEEEEEcCC
Q 032878 81 PPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 81 ~~~~~~~dkF~V~~~~~~~ 99 (131)
|.|. .--|-+...++|+
T Consensus 115 P~DR--ESlf~lnv~eIPp 131 (243)
T PRK15290 115 PDDR--ESVFWLNIKNIPP 131 (243)
T ss_pred CCCe--eEEEEEEEEEcCC
Confidence 5442 3344455555554
No 20
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=93.95 E-value=1.1 Score=34.25 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=56.9
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCC-eEEEEEec-C-C---CCeEEEcCCeeEECCCCeEEEEEEecCCCCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKT-T-S---PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~-~vaFKVkt-T-~---p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~ 81 (131)
--|.+++..+.|+... ....++|+|.+++ +..-.... + . ..-|.|.|+.--|+||+...+.|..... ..|
T Consensus 27 Agi~l~~TRvIy~~~~---~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP 102 (228)
T PRK15188 27 GGIALGATRVIYPQGS---KQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLP 102 (228)
T ss_pred ceEEECcEEEEEcCCC---ceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 3477888888888632 3689999999854 33322222 1 1 1249999999999999999999998753 344
Q ss_pred CCCCCCCEEEEEEEEcCC
Q 032878 82 PDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 82 ~~~~~~dkF~V~~~~~~~ 99 (131)
.|. .--|-+....+|+
T Consensus 103 ~DR--ESlf~lnv~~IP~ 118 (228)
T PRK15188 103 TDR--ESVFYLNSKAIPS 118 (228)
T ss_pred CCc--eEEEEEEEEecCC
Confidence 442 2334444445554
No 21
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.91 E-value=2.2 Score=32.58 Aligned_cols=87 Identities=13% Similarity=0.157 Sum_probs=65.9
Q ss_pred CccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCC-------CCeEEEcCCeeEECCCCeEEEEEEecCCCC
Q 032878 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRE 79 (131)
Q Consensus 7 ~~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~-------p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~ 79 (131)
.--+.+.+..+.|+.... ...++|.|.++.++.-.+..-+ ..-|.|.|+.--|+||+...|.|.+.+. .
T Consensus 26 ~A~v~i~~TRiI~~~~~k---~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~ 101 (235)
T COG3121 26 AAGVVLGGTRIIYPAGDK---ETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-K 101 (235)
T ss_pred eeeEEecceEEEEeCCCc---eeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-C
Confidence 344677777888886533 5889999999999999877652 3349999999999999999999999986 3
Q ss_pred CCCCCCCCCEEEEEEEEcCC
Q 032878 80 SPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 80 ~~~~~~~~dkF~V~~~~~~~ 99 (131)
.|.| ...-|-+..-++|+
T Consensus 102 lP~d--rEslf~lnv~eIPp 119 (235)
T COG3121 102 LPAD--RESLFRLNVDEIPP 119 (235)
T ss_pred CCCC--ceeEEEEEeeecCC
Confidence 5655 34556666666654
No 22
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=93.58 E-value=1.5 Score=33.67 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=57.1
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCC-CeEEEEEecCC-----CCeEEEcCCeeEECCCCeEEEEEEecC--CCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTLQA--QRE 79 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~-~~vaFKVktT~-----p~~y~V~P~~G~i~P~~s~~I~I~~~~--~~~ 79 (131)
--|.+++..+.|+... ....++|.|.++ .+..-...... ..-|.|.|+.--|+||+...|.|.... ...
T Consensus 16 A~v~l~~TRvIy~~~~---~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~ 92 (239)
T PRK15254 16 AAVNVDRTRIIMDAPQ---KTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDK 92 (239)
T ss_pred EeEEECceEEEEeCCC---ceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCC
Confidence 4577788888888533 368899999885 46554443211 124999999999999999999998763 223
Q ss_pred CCCCCCCCCEEEEEEEEcCC
Q 032878 80 SPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 80 ~~~~~~~~dkF~V~~~~~~~ 99 (131)
.|.|. ..-|-+....+|+
T Consensus 93 lP~DR--ESlf~lnv~~IP~ 110 (239)
T PRK15254 93 LPQDR--ETLFWFNVRGVPP 110 (239)
T ss_pred CCCCc--eEEEEEEEEEcCC
Confidence 44442 2334444444443
No 23
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=93.30 E-value=1.8 Score=32.96 Aligned_cols=86 Identities=16% Similarity=0.214 Sum_probs=55.3
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCC-eEE-EEEecCC----CCeEEEcCCeeEECCCCeEEEEEEecCCCCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEH-HVA-FKVKTTS----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~-~va-FKVktT~----p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~ 81 (131)
--|.+++..+.|+.... ...++|.|.++. +.. ...-.+. ..-|.|.|+.--|+||+...|.|..... ..|
T Consensus 25 Agi~i~~TRvIy~~~~~---~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP 100 (229)
T PRK15195 25 GGIALGATRVIYPADAK---QTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLA 100 (229)
T ss_pred eeEEECCeEEEEeCCCc---eEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 45778888888885433 489999999854 333 2211111 1259999999999999999999998653 234
Q ss_pred CCCCCCCEEEEEEEEcCC
Q 032878 82 PDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 82 ~~~~~~dkF~V~~~~~~~ 99 (131)
.|.+ --|-+....+|+
T Consensus 101 ~DrE--Slf~Lnv~eIP~ 116 (229)
T PRK15195 101 ADRE--SLFWMNVKAIPS 116 (229)
T ss_pred CCee--EEEEEEeeecCC
Confidence 4422 223444444443
No 24
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=92.81 E-value=3.4 Score=31.48 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=55.6
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCC----------CeEEEcCCeeEECCCCeEEEEEEecCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQRE 79 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p----------~~y~V~P~~G~i~P~~s~~I~I~~~~~~~ 79 (131)
|.++-..+.|+.. .....++|.|.++.+..-....... .-|.|.|+.--|+||+...+.|..... .
T Consensus 20 i~l~~TRvIy~~~---~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~ 95 (226)
T PRK15218 20 IYIYGTRIIYPAQ---KKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN-N 95 (226)
T ss_pred EEeCceEEEEcCC---CcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-C
Confidence 4555557777753 2368899999998863333322221 149999999999999999999998653 3
Q ss_pred CCCCCCCCCEEEEEEEEcCC
Q 032878 80 SPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 80 ~~~~~~~~dkF~V~~~~~~~ 99 (131)
.|.|. .--|-+....+|+
T Consensus 96 LP~DR--ESlfwlnv~~IPp 113 (226)
T PRK15218 96 LPGDR--ESLFYLNVLDIPP 113 (226)
T ss_pred CCcce--eEEEEEEEEEcCC
Confidence 45442 3344455555554
No 25
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=92.21 E-value=0.54 Score=31.40 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=33.0
Q ss_pred ceeEEEEEEecCCCCeEEEEEecC---------CCCeEE------------EcCCeeEECCCCeEEEEEEecCC
Q 032878 25 KQGFCDLKVINNTEHHVAFKVKTT---------SPKKYF------------VRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 25 ~~~~~~l~l~N~s~~~vaFKVktT---------~p~~y~------------V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
......|+|+|.+++.+.|++.-. ..++.. ..|..=.|+||++.+|.|++...
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 346788999999999999998754 111211 11233368999999999998874
No 26
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=92.10 E-value=4.4 Score=31.13 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=54.9
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEec----CC---CCeEEEcCCeeEECCCCeEEEEEEecCCCCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT----TS---PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVkt----T~---p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~ 82 (131)
|.++-..+.|+... ....|+|.|.++.+ |-|++ .+ ..-|.|.|+.--|+|++...+.|..... ..|.
T Consensus 30 v~l~~TRvIy~~~~---k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~ 103 (237)
T PRK15224 30 VKLGATRVIYHAGT---AGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPT 103 (237)
T ss_pred EEeCceEEEEeCCC---cEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCC
Confidence 44444567777532 36889999999876 55654 11 1239999999999999999999998743 3555
Q ss_pred CCCCCCEEEEEEEEcCC
Q 032878 83 DMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 83 ~~~~~dkF~V~~~~~~~ 99 (131)
|. .--|-+....+|+
T Consensus 104 DR--ESlFwlnv~~IPp 118 (237)
T PRK15224 104 DR--ETLQWVCIKAVPP 118 (237)
T ss_pred ce--eEEEEEEEEEcCC
Confidence 42 2334444455554
No 27
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=91.63 E-value=3.9 Score=31.63 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=53.4
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEec--CC-----CCeEEEcCCeeEECCCCeEEEEEEecCCCCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKT--TS-----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVkt--T~-----p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~ 82 (131)
|.++-..+.|+... ....++|.|.++.+ |-|++ .. ..-|.|.|+.--|+|++...+.|..... ..|.
T Consensus 42 i~l~~TRvIy~~~~---~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~ 115 (246)
T PRK15233 42 LRLGTTRVIYKEDA---PSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNK 115 (246)
T ss_pred EEeCceEEEEeCCC---cEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCc
Confidence 34444456666432 36889999988777 44443 11 1249999999999999999999998753 3454
Q ss_pred CCCCCCEEEEEEEEcCC
Q 032878 83 DMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 83 ~~~~~dkF~V~~~~~~~ 99 (131)
|. .--|-+....+|+
T Consensus 116 DR--ESlfwlnv~~IPp 130 (246)
T PRK15233 116 NE--ESLYWLCVKGVPP 130 (246)
T ss_pred Cc--eEEEEEEEEEcCC
Confidence 42 2234455555554
No 28
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=90.69 E-value=3.4 Score=28.37 Aligned_cols=30 Identities=13% Similarity=0.356 Sum_probs=24.4
Q ss_pred EEEeccCCceeEEEEEEecCCCCeEEEEEe
Q 032878 17 LKFIFELEKQGFCDLKVINNTEHHVAFKVK 46 (131)
Q Consensus 17 l~F~~~~~~~~~~~l~l~N~s~~~vaFKVk 46 (131)
..+...++..+.-.++|+|.+++++-|+|.
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 444456677778889999999999999997
No 29
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=90.48 E-value=7 Score=30.42 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=55.1
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCC-eEEEEEecCCC------CeEEEcCCeeEECCCCeEEEEEEecC-CCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTSP------KKYFVRPNTGVVQPWDSCIIRVTLQA-QRESP 81 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~-~vaFKVktT~p------~~y~V~P~~G~i~P~~s~~I~I~~~~-~~~~~ 81 (131)
|.++-..+.|+.. .....|+|.|.++. +..-....... .-|.|.|+.--|+||+...|.|...+ ....|
T Consensus 28 i~l~~TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP 104 (257)
T PRK15274 28 IVPDRTRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLP 104 (257)
T ss_pred EEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 4455556788753 23688999999865 55444432211 24999999999999999999999875 23345
Q ss_pred CCCCCCCEEEEEEEEcCC
Q 032878 82 PDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 82 ~~~~~~dkF~V~~~~~~~ 99 (131)
.|. .--|-+....+|+
T Consensus 105 ~DR--ESlFwlNv~eIPp 120 (257)
T PRK15274 105 QDR--ESLFYFNVREIPP 120 (257)
T ss_pred Cce--eEEEEEEEEEcCC
Confidence 442 2334444455554
No 30
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=90.03 E-value=7.3 Score=29.98 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=55.6
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCC----------CeEEEcCCeeEECCCCeEEEEEEecCCC
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQR 78 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p----------~~y~V~P~~G~i~P~~s~~I~I~~~~~~ 78 (131)
-|.++-..+.|+.. .....++|.|.++.+..-.....+. .-|.|.|+.--|+|++...|.|.....
T Consensus 34 gv~l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~- 109 (242)
T PRK15253 34 GIVIYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN- 109 (242)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-
Confidence 34555556777753 2368899999998864433322211 249999999999999999999987653
Q ss_pred CCCCCCCCCCEEEEEEEEcCC
Q 032878 79 ESPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 79 ~~~~~~~~~dkF~V~~~~~~~ 99 (131)
..|.|. .--|-+....+|+
T Consensus 110 ~LP~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 110 SLPDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred CCCcce--eEEEEEEEEEcCC
Confidence 345442 2344455555554
No 31
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=90.01 E-value=0.68 Score=33.66 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=25.7
Q ss_pred EEEecCCCCeEEEcCCeeE--ECCCCeEEEEEEecCC
Q 032878 43 FKVKTTSPKKYFVRPNTGV--VQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 43 FKVktT~p~~y~V~P~~G~--i~P~~s~~I~I~~~~~ 77 (131)
|+|.-=+-+.|++.|.-|+ |.||+++.|.+.-...
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~w 105 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEYW 105 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES-
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEcccc
Confidence 6777667788999999997 8999999999986553
No 32
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=88.16 E-value=3.3 Score=27.22 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=41.1
Q ss_pred CCceeEEEEEEecCCCCe--------EEEEEecCCCC--eEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 23 LEKQGFCDLKVINNTEHH--------VAFKVKTTSPK--KYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 23 ~~~~~~~~l~l~N~s~~~--------vaFKVktT~p~--~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
.++.....++++|++..+ .++-|--|.-. .....-..+-|+||++..+.+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 477889999999998877 66777666543 25677888999999999999999875
No 33
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=88.15 E-value=10 Score=29.13 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=62.2
Q ss_pred CccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEe---cCC---------------CCeEEEcCCeeEECCCCeE
Q 032878 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVK---TTS---------------PKKYFVRPNTGVVQPWDSC 68 (131)
Q Consensus 7 ~~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVk---tT~---------------p~~y~V~P~~G~i~P~~s~ 68 (131)
.--|.|.|-.+++.+. ......++|.|.++.+..++|+ -++ .+.-.+.|..-.|+||++.
T Consensus 15 aa~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q 92 (234)
T PRK15308 15 RANMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTR 92 (234)
T ss_pred hceEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeE
Confidence 4457788877776543 2346889999999999988875 223 2247889999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCEEEEEEEEcCCC
Q 032878 69 IIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (131)
Q Consensus 69 ~I~I~~~~~~~~~~~~~~~dkF~V~~~~~~~~ 100 (131)
.|.+..... + + ...-|.|..-++++.
T Consensus 93 ~IRli~lg~---~-~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 93 TVRVISLQA---P-E--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEEEcCC---C-C--cEEEEEEEEEecCCc
Confidence 999887663 1 1 345577777777653
No 34
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=87.33 E-value=1 Score=28.11 Aligned_cols=55 Identities=15% Similarity=0.223 Sum_probs=31.2
Q ss_pred CceeEEEEEEecCCCCeE-EEEEecCCCCeEE--EcCCe-eEECCCCeEEEEEEecCCC
Q 032878 24 EKQGFCDLKVINNTEHHV-AFKVKTTSPKKYF--VRPNT-GVVQPWDSCIIRVTLQAQR 78 (131)
Q Consensus 24 ~~~~~~~l~l~N~s~~~v-aFKVktT~p~~y~--V~P~~-G~i~P~~s~~I~I~~~~~~ 78 (131)
+....-.++++|.+..++ ..++.-..|.-.. +.|.. +-|+||++..+.+.+.+..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 455677899999876542 2444444466655 55554 4799999999999988753
No 35
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=86.26 E-value=4 Score=26.13 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=32.9
Q ss_pred EEEEEEecCCCCeEEEEEecCCCCeEE-EcCCeeEECCCCeEEEEEEec
Q 032878 28 FCDLKVINNTEHHVAFKVKTTSPKKYF-VRPNTGVVQPWDSCIIRVTLQ 75 (131)
Q Consensus 28 ~~~l~l~N~s~~~vaFKVktT~p~~y~-V~P~~G~i~P~~s~~I~I~~~ 75 (131)
.-.|+|.|.+...+.|.|.... |. -.|-.=.|.||++..+..-+.
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEeec
Confidence 5789999999999999998721 22 233444566799888888763
No 36
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=85.63 E-value=15 Score=28.46 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=52.9
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCC-eEEEEEecC--CC----CeEEEcCCeeEECCCCeEEEEEEecC-CCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTT--SP----KKYFVRPNTGVVQPWDSCIIRVTLQA-QRESP 81 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~-~vaFKVktT--~p----~~y~V~P~~G~i~P~~s~~I~I~~~~-~~~~~ 81 (131)
|.++-..+.|+.. .....++|+|.++. +..-..... .. .-|.|-|+.--|+||+...+.|...+ ....|
T Consensus 27 v~l~~TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP 103 (250)
T PRK15285 27 IAPDRTRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLP 103 (250)
T ss_pred EEeCccEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCC
Confidence 4445556777753 23688999998865 543333221 11 13999999999999999999999775 22344
Q ss_pred CCCCCCCEEEEEEEEcCC
Q 032878 82 PDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 82 ~~~~~~dkF~V~~~~~~~ 99 (131)
.|. .--|-+....+|+
T Consensus 104 ~DR--ESlfwlnv~~IPp 119 (250)
T PRK15285 104 QDR--ETLFYYNVREIPP 119 (250)
T ss_pred CCc--eEEEEEEEEEcCC
Confidence 442 2334444444444
No 37
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=85.15 E-value=6.6 Score=25.38 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=38.1
Q ss_pred ceeEEEEEEecCCCCeEE-EEEecCCCCeEEEc--CCee-EECCCCeEEEEEEecCC
Q 032878 25 KQGFCDLKVINNTEHHVA-FKVKTTSPKKYFVR--PNTG-VVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 25 ~~~~~~l~l~N~s~~~va-FKVktT~p~~y~V~--P~~G-~i~P~~s~~I~I~~~~~ 77 (131)
...+-.+...|.+..++. |.++-..|..+.+. |..| .|+||+.+...+.+...
T Consensus 18 ~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~ 74 (104)
T smart00809 18 GLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENP 74 (104)
T ss_pred CeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECC
Confidence 456677888999887776 77776666665554 6654 89999987777776553
No 38
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=83.29 E-value=6.3 Score=32.31 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=42.0
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEE----------------------EcCCeeEECCCCe
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYF----------------------VRPNTGVVQPWDS 67 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~----------------------V~P~~G~i~P~~s 67 (131)
+.++-..-+|.-| ++..+-+++++|.++++|-..==+|+.-+|. |.|+ +-|+|||+
T Consensus 249 V~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 5555555666654 6778999999999999987765455544442 3333 35899999
Q ss_pred EEEEEEecC
Q 032878 68 CIIRVTLQA 76 (131)
Q Consensus 68 ~~I~I~~~~ 76 (131)
.+++|+.+.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999865
No 39
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=83.23 E-value=15 Score=27.03 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=42.9
Q ss_pred cCCceeEEEEEEecCCCCeEEEEEecCC----CCeEEEcC-----CeeEECCCCeEEEEEEecCC
Q 032878 22 ELEKQGFCDLKVINNTEHHVAFKVKTTS----PKKYFVRP-----NTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 22 ~~~~~~~~~l~l~N~s~~~vaFKVktT~----p~~y~V~P-----~~G~i~P~~s~~I~I~~~~~ 77 (131)
..+++....++|.|.++. -||.|+-++ ++.|.+.- ....|+||+++.-.++++|.
T Consensus 35 v~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 35 VEGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred cCCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 346788999999999988 689999777 35555431 24789999999988888875
No 40
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=79.99 E-value=12 Score=24.59 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=32.9
Q ss_pred CceeEEEEEEecCCCCeEE-----EEEecCCCCeEEEcC---------CeeEECCCCeEEEEEEecC
Q 032878 24 EKQGFCDLKVINNTEHHVA-----FKVKTTSPKKYFVRP---------NTGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 24 ~~~~~~~l~l~N~s~~~va-----FKVktT~p~~y~V~P---------~~G~i~P~~s~~I~I~~~~ 76 (131)
++-..-.++++|.++.++. |++.+.+...|.... ..+-|.||++++-.+.+.-
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 3456778999999988886 678776666666443 4589999999998888765
No 41
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=77.64 E-value=9.1 Score=31.46 Aligned_cols=55 Identities=13% Similarity=0.287 Sum_probs=39.8
Q ss_pred CCceeEEEEEEecCCCCeEEEEEecCCCCeE-------EEcCCe-------e-------EECCCCeEEEEEEecCC
Q 032878 23 LEKQGFCDLKVINNTEHHVAFKVKTTSPKKY-------FVRPNT-------G-------VVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 23 ~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y-------~V~P~~-------G-------~i~P~~s~~I~I~~~~~ 77 (131)
.+|..+-+++++|.++.+|-.+==+|++-|| ...|.. | -|.|||+.+|.|..+.-
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 3677889999999999998776555554443 233322 2 38999999999998764
No 42
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=74.43 E-value=51 Score=27.64 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=45.9
Q ss_pred eeEEEEEEecCCCCeEEEEEecCCCCeEEEc-C-CeeEECCCCeEEEEEEecCCCCCCCCCCCCCEEEEEEEE
Q 032878 26 QGFCDLKVINNTEHHVAFKVKTTSPKKYFVR-P-NTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTI 96 (131)
Q Consensus 26 ~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~-P-~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~ 96 (131)
.-...++|.|.+.++..|.++........+. + +.=.|+||+..++.|++........ ...+.|.+....
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~~--~~~~~i~~~v~~ 417 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALK--SGITSIEIRAYA 417 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhcc--CCceeEEEEEEE
Confidence 3457799999999988888887764443333 2 3458999999998888766432222 234556655443
No 43
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=70.47 E-value=25 Score=22.36 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=11.9
Q ss_pred EEEEEEecCCCCeEEEEEecC
Q 032878 28 FCDLKVINNTEHHVAFKVKTT 48 (131)
Q Consensus 28 ~~~l~l~N~s~~~vaFKVktT 48 (131)
...|+|+|.+++++-+...|.
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sg 23 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSG 23 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS
T ss_pred EEEEEEEeCCCCeEEEEeCCC
Confidence 345677777777776665543
No 44
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=66.70 E-value=32 Score=22.27 Aligned_cols=49 Identities=6% Similarity=0.032 Sum_probs=29.3
Q ss_pred CceeEEEEEEecCCCCe--EEEEEecCCCCeEEEcCC-----eeEECCCCeEEEEE
Q 032878 24 EKQGFCDLKVINNTEHH--VAFKVKTTSPKKYFVRPN-----TGVVQPWDSCIIRV 72 (131)
Q Consensus 24 ~~~~~~~l~l~N~s~~~--vaFKVktT~p~~y~V~P~-----~G~i~P~~s~~I~I 72 (131)
++.....+.|+|.+..+ +.||+-==+.+.+.|.|. .=.|.++++..|.-
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~ 78 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSA 78 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEE
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEE
Confidence 66788999999998666 888887666777777766 33556666555443
No 45
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=66.39 E-value=10 Score=24.88 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=32.7
Q ss_pred eEEEEEEecCCCCeE-EEEEecCCC-----------------CeEEEcCCe--eEECCCCeEEEEEEecCC
Q 032878 27 GFCDLKVINNTEHHV-AFKVKTTSP-----------------KKYFVRPNT--GVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 27 ~~~~l~l~N~s~~~v-aFKVktT~p-----------------~~y~V~P~~--G~i~P~~s~~I~I~~~~~ 77 (131)
-...|+|+|.++.++ .++|.=+-| +.|.++|.. +.|+||+++.+-+.....
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~~ 85 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASGS 85 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEES
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeCC
Confidence 345688888877665 244432222 457887654 789999988776665443
No 46
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=66.14 E-value=35 Score=22.40 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=46.5
Q ss_pred eEEEeccC---CceeEEEEEEecCCCCeEE-EEEec--CCCCeEEEcCCe-eEECCCCeEEEEEEecC-CCCCCCCCCCC
Q 032878 16 ELKFIFEL---EKQGFCDLKVINNTEHHVA-FKVKT--TSPKKYFVRPNT-GVVQPWDSCIIRVTLQA-QRESPPDMQCK 87 (131)
Q Consensus 16 ~l~F~~~~---~~~~~~~l~l~N~s~~~va-FKVkt--T~p~~y~V~P~~-G~i~P~~s~~I~I~~~~-~~~~~~~~~~~ 87 (131)
.|.|.... +...+-.++..|.+..++- |.++- .......+.|.. ..|+|+..+.-.+.... ....+.....+
T Consensus 12 ~I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~~~~~~~~~~~l~ 91 (115)
T PF02883_consen 12 QIGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVENSPFSEPTPKPLK 91 (115)
T ss_dssp EEEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEESS-BSTTSSTTE
T ss_pred EEEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEEeecccCCCCCcC
Confidence 44555442 4567777889999887765 66654 445566677774 59999998876665544 11112222345
Q ss_pred CEEEEEEEE
Q 032878 88 DKFLLQSTI 96 (131)
Q Consensus 88 dkF~V~~~~ 96 (131)
=++.|.+..
T Consensus 92 ~~~~vsy~~ 100 (115)
T PF02883_consen 92 PRLRVSYNV 100 (115)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 566666664
No 47
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=62.60 E-value=35 Score=21.21 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=34.9
Q ss_pred CCceeEEEEEEecCCCCe-EEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 23 LEKQGFCDLKVINNTEHH-VAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 23 ~~~~~~~~l~l~N~s~~~-vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
.+....-.++|+|.+... =.|+|+-...+...-.-..+-|+||++..+.+++.+.
T Consensus 17 ~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 356678889999987643 4466654333333333334789999999999998875
No 48
>smart00637 CBD_II CBD_II domain.
Probab=56.98 E-value=48 Score=20.99 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=18.0
Q ss_pred CeEEEcCCe--eEECCCCeEEEEEEe
Q 032878 51 KKYFVRPNT--GVVQPWDSCIIRVTL 74 (131)
Q Consensus 51 ~~y~V~P~~--G~i~P~~s~~I~I~~ 74 (131)
..|.+.|.. +.|+||+++.+-+..
T Consensus 50 ~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 50 GHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred CEEEEecCccccccCCCCEEEEEEEe
Confidence 368888644 799999988776665
No 49
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=55.24 E-value=55 Score=21.15 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=31.3
Q ss_pred EEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEE
Q 032878 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (131)
Q Consensus 11 ~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~ 73 (131)
..+|+++..+ .+. ...|+++|.+...-.|.+.. .--...|.||++..+.++
T Consensus 31 ~f~P~~i~v~--~G~--~v~l~~~N~~~~~h~~~i~~--------~~~~~~l~~g~~~~~~f~ 81 (104)
T PF13473_consen 31 GFSPSTITVK--AGQ--PVTLTFTNNDSRPHEFVIPD--------LGISKVLPPGETATVTFT 81 (104)
T ss_dssp EEES-EEEEE--TTC--EEEEEEEE-SSS-EEEEEGG--------GTEEEEE-TT-EEEEEEE
T ss_pred eEecCEEEEc--CCC--eEEEEEEECCCCcEEEEECC--------CceEEEECCCCEEEEEEc
Confidence 4566666544 233 35589999998888887766 112267999999999885
No 50
>PF13205 Big_5: Bacterial Ig-like domain
Probab=52.37 E-value=58 Score=20.62 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=36.0
Q ss_pred eEEEeccCCc-eeEEEEEEe--cCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEe
Q 032878 16 ELKFIFELEK-QGFCDLKVI--NNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (131)
Q Consensus 16 ~l~F~~~~~~-~~~~~l~l~--N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~ 74 (131)
.|.|+.+-+. .....+.+. +....++.+. ....+.+.+.|. +-|.+|..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 5777766433 233445554 3445555555 344588888888 557889999988853
No 51
>COG1470 Predicted membrane protein [Function unknown]
Probab=51.38 E-value=1.6e+02 Score=25.30 Aligned_cols=87 Identities=11% Similarity=0.147 Sum_probs=55.4
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCe---EEEEEecCCCCeEEEcCCe-eEECCCCeEEEEEEecCCCCCCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHH---VAFKVKTTSPKKYFVRPNT-GVVQPWDSCIIRVTLQAQRESPPD 83 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~---vaFKVktT~p~~y~V~P~~-G~i~P~~s~~I~I~~~~~~~~~~~ 83 (131)
..|.++=..+.-....+......+.|.|.++-+ |--+|+.-.-+.-.|.|+. --|+||++..|.++..... +
T Consensus 380 ~~v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~----~ 455 (513)
T COG1470 380 ELVKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPE----D 455 (513)
T ss_pred eeEEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCC----C
Confidence 344444433344445566778889999988644 5555555555556666775 5789999999999887743 3
Q ss_pred CCCCCEEEEEEEEcC
Q 032878 84 MQCKDKFLLQSTIVP 98 (131)
Q Consensus 84 ~~~~dkF~V~~~~~~ 98 (131)
....|++.--.+..+
T Consensus 456 a~aGdY~i~i~~ksD 470 (513)
T COG1470 456 AGAGDYRITITAKSD 470 (513)
T ss_pred CCCCcEEEEEEEeec
Confidence 345676665444433
No 52
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=49.48 E-value=24 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEe-cCC
Q 032878 39 HHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL-QAQ 77 (131)
Q Consensus 39 ~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~-~~~ 77 (131)
|+|+|++ |.+.-|+||+++++.+.+ .|.
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~YyLPi 144 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVYYLPI 144 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEEEecc
Confidence 6666666 778889999999998864 454
No 53
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=48.68 E-value=36 Score=24.74 Aligned_cols=67 Identities=10% Similarity=0.186 Sum_probs=44.1
Q ss_pred eEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCEEEEEEEEcCCC
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~~~~ 100 (131)
.+-..=|.|-|+..+.|-..+...+.|.++ +.|.|+|+-...|.-.-... ...-.+..||.+.--.+
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~e------LN~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEE------LNDLERVAVQLIAYKKD 84 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGG------GGG-SSEEEEEEEE-SS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHH------hhccceeEEEEEEEcCC
Confidence 456678999999999999999888888887 78999999888765543321 11235566666655433
No 54
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=48.68 E-value=18 Score=21.58 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=26.0
Q ss_pred EEEecCCCCeEEEEE-ecCCCCeEEEcCCeeEECCCCeEEEEEE
Q 032878 31 LKVINNTEHHVAFKV-KTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (131)
Q Consensus 31 l~l~N~s~~~vaFKV-ktT~p~~y~V~P~~G~i~P~~s~~I~I~ 73 (131)
|+++|+|-..|.|-= +....++=.--...+.|+|+++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEecc
Confidence 688999998888854 3333333222344449999999887654
No 55
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.49 E-value=78 Score=24.07 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=31.2
Q ss_pred EEEEEecCCCCeEEEE--EecCCCCeEEEcCCeeEECCCCeEEEEEE
Q 032878 29 CDLKVINNTEHHVAFK--VKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73 (131)
Q Consensus 29 ~~l~l~N~s~~~vaFK--VktT~p~~y~V~P~~G~i~P~~s~~I~I~ 73 (131)
..|+++|+|..++.|- .-.. .++-.. -..+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 5789999999999988 3333 333222 67889999998886554
No 56
>PF11175 DUF2961: Protein of unknown function (DUF2961); InterPro: IPR021345 This family of proteins has no known function.
Probab=43.61 E-value=75 Score=24.44 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=30.5
Q ss_pred CCCccEEEcCC---eEEEeccCCceeEEEEEEecCCCCeE-E--EEEec
Q 032878 5 GGNQLISVHPE---ELKFIFELEKQGFCDLKVINNTEHHV-A--FKVKT 47 (131)
Q Consensus 5 ~~~~~l~v~P~---~l~F~~~~~~~~~~~l~l~N~s~~~v-a--FKVkt 47 (131)
-.+-.+.++|. .-.|+-|+.+ .+.|+|.|.++.++ + |.|..
T Consensus 37 ~~Sl~~~~~~~~~~n~y~pMPF~k--~arItl~N~~~~~~~~~~~~i~y 83 (237)
T PF11175_consen 37 VNSLPFGVNPDGGFNCYFPMPFRK--SARITLENESDEPVSAFYYQIDY 83 (237)
T ss_pred ccceeEEECCCCcEEEEEecccCC--CeEEEEEeCCCCceeEEEEEEEe
Confidence 34567788885 4678888876 79999999998877 3 35553
No 57
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=38.92 E-value=87 Score=24.12 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=28.7
Q ss_pred EEEEecCCCCeEEEE-EecCCCCeEEEcCCeeEECCCCeEEEEE
Q 032878 30 DLKVINNTEHHVAFK-VKTTSPKKYFVRPNTGVVQPWDSCIIRV 72 (131)
Q Consensus 30 ~l~l~N~s~~~vaFK-VktT~p~~y~V~P~~G~i~P~~s~~I~I 72 (131)
.|+++|+|...+.|. ++....+ -.+....|.|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 499999999998776 3322222 12323458899999998875
No 58
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=37.66 E-value=75 Score=21.31 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=34.8
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEEE----EEecCCC---------CeEEEcCCee---EECCCCeEEEEEEec
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAF----KVKTTSP---------KKYFVRPNTG---VVQPWDSCIIRVTLQ 75 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaF----KVktT~p---------~~y~V~P~~G---~i~P~~s~~I~I~~~ 75 (131)
+.+..++++.- .....|+++|++++||-- -.==+++ .-|+..=+.| -.+||++.+|++.-.
T Consensus 8 ~~~~~I~lN~g---r~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (101)
T cd00407 8 LKEGDIELNAG---REAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPI 84 (101)
T ss_pred eCCCCeEeCCC---CCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEc
Confidence 33445665532 346889999999999741 1111111 1133332222 367888887777644
Q ss_pred CC
Q 032878 76 AQ 77 (131)
Q Consensus 76 ~~ 77 (131)
++
T Consensus 85 ~G 86 (101)
T cd00407 85 GG 86 (101)
T ss_pred cC
Confidence 43
No 59
>PRK13202 ureB urease subunit beta; Reviewed
Probab=37.13 E-value=66 Score=21.67 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=34.8
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEEE----EEecCCC---------CeEEEcCCee---EECCCCeEEEEEEec
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAF----KVKTTSP---------KKYFVRPNTG---VVQPWDSCIIRVTLQ 75 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaF----KVktT~p---------~~y~V~P~~G---~i~P~~s~~I~I~~~ 75 (131)
+.+.+++++. ++.....|+++|+++.||-- -.==+|+ .-|+..=+.| -.+||++.+|.+.-.
T Consensus 8 ~~~~~I~ln~--grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 85 (104)
T PRK13202 8 YGSGDIEMNA--AALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL 85 (104)
T ss_pred cCCCCEEeCC--CCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc
Confidence 3445566553 32346889999999999731 1111111 1133332222 357888887777644
Q ss_pred CC
Q 032878 76 AQ 77 (131)
Q Consensus 76 ~~ 77 (131)
++
T Consensus 86 gG 87 (104)
T PRK13202 86 GG 87 (104)
T ss_pred cC
Confidence 43
No 60
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=35.89 E-value=76 Score=21.29 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=34.8
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEEE----E---------EecCCCCeEEEcCCee---EECCCCeEEEEEEec
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAF----K---------VKTTSPKKYFVRPNTG---VVQPWDSCIIRVTLQ 75 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaF----K---------VktT~p~~y~V~P~~G---~i~P~~s~~I~I~~~ 75 (131)
+.+.+++++. + .....|+++|++++||-- - ..=..-.-|+..=+.| -.+||++.+|++.-.
T Consensus 8 ~~~~~I~ln~--g-r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (101)
T TIGR00192 8 LAEGDITINE--G-RKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAI 84 (101)
T ss_pred cCCCCEEeCC--C-CcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 3444566553 2 246889999999999731 1 1111111233332222 367888888777654
Q ss_pred CC
Q 032878 76 AQ 77 (131)
Q Consensus 76 ~~ 77 (131)
++
T Consensus 85 gG 86 (101)
T TIGR00192 85 GG 86 (101)
T ss_pred cC
Confidence 44
No 61
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=35.20 E-value=1.1e+02 Score=18.84 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=36.2
Q ss_pred CeEEEeccCCceeEEEEEEecCCC--CeEEEEEec---CCCCeEEEcCCeeEECCCCeEEEEEEe
Q 032878 15 EELKFIFELEKQGFCDLKVINNTE--HHVAFKVKT---TSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (131)
Q Consensus 15 ~~l~F~~~~~~~~~~~l~l~N~s~--~~vaFKVkt---T~p~~y~V~P~~G~i~P~~s~~I~I~~ 74 (131)
..|.+...........|.|.|-.. -.....|.+ ++.+.|.+.++.+ |.++..+.|.|.-
T Consensus 15 ~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 15 ITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIVN 78 (93)
T ss_pred EEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEEE
Confidence 356666544445678899988544 223334432 2247888888776 5666677777773
No 62
>PRK13203 ureB urease subunit beta; Reviewed
Probab=33.69 E-value=86 Score=21.07 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=34.0
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEEE----EEecCCC---------CeEEEcCCee---EECCCCeEEEEEEec
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAF----KVKTTSP---------KKYFVRPNTG---VVQPWDSCIIRVTLQ 75 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaF----KVktT~p---------~~y~V~P~~G---~i~P~~s~~I~I~~~ 75 (131)
+.+..++++.- .....|+++|++++||-- -.==+++ .-|+..=+.| -.+||++.+|.+.-.
T Consensus 8 ~~~~~I~ln~g---r~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (102)
T PRK13203 8 TADGEIELNAG---RETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPL 84 (102)
T ss_pred cCCCCEEeCCC---CCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 33445555532 246889999999999731 1111111 1133332222 367888888777654
Q ss_pred CC
Q 032878 76 AQ 77 (131)
Q Consensus 76 ~~ 77 (131)
++
T Consensus 85 gG 86 (102)
T PRK13203 85 AG 86 (102)
T ss_pred cC
Confidence 43
No 63
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=33.17 E-value=1.7e+02 Score=22.42 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=28.3
Q ss_pred EEEEEecCCCCeEEEE-EecCC-CCeEEEcCCeeEECCCCeEEEEEE
Q 032878 29 CDLKVINNTEHHVAFK-VKTTS-PKKYFVRPNTGVVQPWDSCIIRVT 73 (131)
Q Consensus 29 ~~l~l~N~s~~~vaFK-VktT~-p~~y~V~P~~G~i~P~~s~~I~I~ 73 (131)
..|+++|+|..++.|. ++-.. ...+.+ ..+.|.|+++..+.+-
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEecC
Confidence 3499999999988765 33222 222222 3478999999888753
No 64
>PF06586 TraK: TraK protein; InterPro: IPR010563 This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown [].
Probab=32.73 E-value=1.6e+02 Score=22.01 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=32.2
Q ss_pred eeEEEEEEecCCCCeEEEEEe-cCCCCeEEEcCCeeEECCCCeEEEEE
Q 032878 26 QGFCDLKVINNTEHHVAFKVK-TTSPKKYFVRPNTGVVQPWDSCIIRV 72 (131)
Q Consensus 26 ~~~~~l~l~N~s~~~vaFKVk-tT~p~~y~V~P~~G~i~P~~s~~I~I 72 (131)
..-...+|+|.++.++...=+ .-+++..-|-=..-.|.||++..+-|
T Consensus 187 l~~~~y~v~N~~~~~v~l~E~~f~~~~v~AVa~~~~~L~PGe~t~vyV 234 (234)
T PF06586_consen 187 LRGEVYRVTNTSDQPVELDERDFYSPGVRAVALWPPTLAPGESTEVYV 234 (234)
T ss_pred eEEEEEEEEeCCCCCEEecHHHhCCCCcEEEEecccccCCCCEEEEEC
Confidence 344567899999999987754 34455555543333899999887754
No 65
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=32.40 E-value=1.1e+02 Score=20.40 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=19.3
Q ss_pred eEEEEEEecCCCCeEEEEEecCCCC
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSPK 51 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p~ 51 (131)
.+-.|++.+-...-+.||||.+.|-
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~L 43 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPL 43 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChH
Confidence 4567888886678889999987653
No 66
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=30.55 E-value=1e+02 Score=20.70 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=18.1
Q ss_pred CCeEEEeccCCceeEEEEEEecCCCCeEE
Q 032878 14 PEELKFIFELEKQGFCDLKVINNTEHHVA 42 (131)
Q Consensus 14 P~~l~F~~~~~~~~~~~l~l~N~s~~~va 42 (131)
..+++++.. ...+.+++.|++++||-
T Consensus 10 ~g~IelN~g---r~~~~i~V~NtGDRPIQ 35 (106)
T COG0832 10 SGDIELNAG---RPTVTIEVANTGDRPIQ 35 (106)
T ss_pred CccEEEeCC---CcceEEEEeecCCCceE
Confidence 345665532 34688899999999973
No 67
>smart00605 CW CW domain.
Probab=29.89 E-value=85 Score=19.96 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=14.2
Q ss_pred EEEEEecC-CCCeEEEEEecCCC
Q 032878 29 CDLKVINN-TEHHVAFKVKTTSP 50 (131)
Q Consensus 29 ~~l~l~N~-s~~~vaFKVktT~p 50 (131)
..++-.+. +...||||+.++.+
T Consensus 57 ~~v~~~~~~~~~~VAfK~~~~~~ 79 (94)
T smart00605 57 LTVKKLSSSSGKKVAFKVSTDQP 79 (94)
T ss_pred EEEEEccCCCCcEEEEEEeCCCC
Confidence 44444444 46889999986543
No 68
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=28.98 E-value=1.8e+02 Score=26.04 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=29.3
Q ss_pred EEEEEecCCCCeEEEEEecC-----CCCeEEEcCCeeEECCCCeEEEEEEecC
Q 032878 29 CDLKVINNTEHHVAFKVKTT-----SPKKYFVRPNTGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 29 ~~l~l~N~s~~~vaFKVktT-----~p~~y~V~P~~G~i~P~~s~~I~I~~~~ 76 (131)
-.|+|.|.+...+.|.|... .|.+|. |++|.+..+...+..
T Consensus 607 L~L~L~N~G~~a~~ftV~d~~Y~~~~pr~yt-------V~aG~~~~~~w~l~~ 652 (690)
T TIGR03396 607 LYLTLSNAGRSPVTVTVTDNAYGGAGPRTVT-------VAPGQRVELHWDLSA 652 (690)
T ss_pred EEEEEEeCCCCcEEEEEEeCCCCCCCCEEEE-------ECCCCEEEEEEeccC
Confidence 46899999999999999832 244455 456777777665544
No 69
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=28.96 E-value=2.5e+02 Score=21.20 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=41.9
Q ss_pred CCccEEEcCCeEEEeccCCc-eeEEEEEEecCC--CCeEEEEEecCCCCeEEEcCC
Q 032878 6 GNQLISVHPEELKFIFELEK-QGFCDLKVINNT--EHHVAFKVKTTSPKKYFVRPN 58 (131)
Q Consensus 6 ~~~~l~v~P~~l~F~~~~~~-~~~~~l~l~N~s--~~~vaFKVktT~p~~y~V~P~ 58 (131)
...++-++|..+.|..|.+- .....+++++.+ ...+.+.|...+|..|.....
T Consensus 42 ~APl~yvSp~QIN~qvP~~~~~g~~~v~V~~~g~~s~~~~v~va~~aPgiFt~~~~ 97 (215)
T TIGR03437 42 AAPLLYVSPGQINAQVPYEVAPGAATVTVTYNGGASAAVTVTVAAAAPGIFTLDGS 97 (215)
T ss_pred EEEEEEeCcceEEEEeCCCcCCCcEEEEEEeCCcccceEEEEeeccccEEEEecCC
Confidence 34678899999999999763 356778887654 478889999999999998754
No 70
>PRK13204 ureB urease subunit beta; Reviewed
Probab=28.42 E-value=1.2e+02 Score=22.03 Aligned_cols=64 Identities=9% Similarity=0.020 Sum_probs=36.2
Q ss_pred EEcCCeEEEeccCCceeEEEEEEecCCCCeEEE----EEecCCC---------CeEEEcCCee---EECCCCeEEEEEEe
Q 032878 11 SVHPEELKFIFELEKQGFCDLKVINNTEHHVAF----KVKTTSP---------KKYFVRPNTG---VVQPWDSCIIRVTL 74 (131)
Q Consensus 11 ~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaF----KVktT~p---------~~y~V~P~~G---~i~P~~s~~I~I~~ 74 (131)
.+.+.+++++. ......|+++|++++||-- -.==+|+ .-|+..=+.| -.+||++.+|.+.-
T Consensus 30 ~~~~~~I~lN~---gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 106 (159)
T PRK13204 30 VLAKDPIEINQ---GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVP 106 (159)
T ss_pred EeCCCCeEeCC---CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEE
Confidence 34444555443 2346889999999999741 1111111 1133332223 46899999888875
Q ss_pred cCC
Q 032878 75 QAQ 77 (131)
Q Consensus 75 ~~~ 77 (131)
..+
T Consensus 107 ~gG 109 (159)
T PRK13204 107 FAG 109 (159)
T ss_pred ccC
Confidence 554
No 71
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=28.21 E-value=2.2e+02 Score=20.21 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=31.2
Q ss_pred eEEEEEEecCCCCeEEEEEecCCCC-----eEEEcCCeeEECCCCeEEEEEE
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSPK-----KYFVRPNTGVVQPWDSCIIRVT 73 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p~-----~y~V~P~~G~i~P~~s~~I~I~ 73 (131)
..-.|+++|.++.++. .|+--.++ +-.--|..+.|+||+++.+.+-
T Consensus 87 vsIql~ftN~s~~~i~-~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lg 137 (145)
T PF14796_consen 87 VSIQLTFTNNSDEPIK-NIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLG 137 (145)
T ss_pred EEEEEEEEecCCCeec-ceEECCCCCCCCcEeeccCcccccCCCCeEEEEEE
Confidence 4556889999987653 34332222 3444588899999999887664
No 72
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=27.88 E-value=1.6e+02 Score=20.16 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.4
Q ss_pred eeEECCCCeEEEEEEecC
Q 032878 59 TGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 59 ~G~i~P~~s~~I~I~~~~ 76 (131)
..-|+||+++.+.+.+..
T Consensus 119 ~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 119 QAGLPPGESVPFRLRLED 136 (149)
T ss_pred ccccCCCCeEEEEEEeeC
Confidence 445999999999998764
No 73
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=27.45 E-value=5e+02 Score=27.82 Aligned_cols=29 Identities=14% Similarity=0.496 Sum_probs=24.5
Q ss_pred cCCCCeEEEEEecCC-CCeEEEcCCeeEEC
Q 032878 35 NNTEHHVAFKVKTTS-PKKYFVRPNTGVVQ 63 (131)
Q Consensus 35 N~s~~~vaFKVktT~-p~~y~V~P~~G~i~ 63 (131)
|.++.+++|||-+-+ .+.|++.|..|.|.
T Consensus 1087 sssn~kLmykI~sGnyq~FF~Id~~TG~iT 1116 (4289)
T KOG1219|consen 1087 SSSNQKLMYKITSGNYQGFFQIDPETGLIT 1116 (4289)
T ss_pred cccCcceEEEEccCCccceEEEccccceee
Confidence 467899999998766 56688999999998
No 74
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=27.39 E-value=1.3e+02 Score=17.29 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=34.8
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEc-CCee---EECCCCeEEEEEE
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVR-PNTG---VVQPWDSCIIRVT 73 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~-P~~G---~i~P~~s~~I~I~ 73 (131)
|.|-|+.|.+.........+.+.-.--.....-+.+++.......+. +... .+++|+.+.+.+.
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~ 68 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWD 68 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEE
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEEC
Confidence 46778877775222234455554333344555666777766664443 4433 6888888777765
No 75
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=27.30 E-value=54 Score=19.79 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=12.2
Q ss_pred ECCCCeEEEEEEecCC
Q 032878 62 VQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 62 i~P~~s~~I~I~~~~~ 77 (131)
|+||++..|.+++.+.
T Consensus 29 l~pGes~~v~~~l~~~ 44 (71)
T PF14310_consen 29 LAPGESKTVSFTLPPE 44 (71)
T ss_dssp E-TT-EEEEEEEEEHH
T ss_pred ECCCCEEEEEEEECHH
Confidence 9999999999998763
No 76
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=27.15 E-value=68 Score=21.47 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=30.1
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEEE----EEecCCCC---------eEEEcCCee---EECCCCeEEEEEEec
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAF----KVKTTSPK---------KYFVRPNTG---VVQPWDSCIIRVTLQ 75 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaF----KVktT~p~---------~y~V~P~~G---~i~P~~s~~I~I~~~ 75 (131)
+.+.+++.+. ...+..|+++|++++||-- -.==+++. -|+..=+.| -.+||++.+|.+.-.
T Consensus 7 ~~~~~I~lN~---gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~ 83 (100)
T PF00699_consen 7 LADGDIELNA---GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPI 83 (100)
T ss_dssp --SSEEETTT---TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-
T ss_pred eCCCcEEecC---CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEc
Confidence 3444555332 2357889999999999842 11111221 144442222 368888888877655
Q ss_pred CC
Q 032878 76 AQ 77 (131)
Q Consensus 76 ~~ 77 (131)
++
T Consensus 84 gG 85 (100)
T PF00699_consen 84 GG 85 (100)
T ss_dssp ST
T ss_pred cC
Confidence 44
No 77
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=27.10 E-value=1.9e+02 Score=22.01 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=27.0
Q ss_pred EEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEE
Q 032878 30 DLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRV 72 (131)
Q Consensus 30 ~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I 72 (131)
.|++.|+|-..|.|.--.-.... + ..+.|.|+++..+.+
T Consensus 154 ~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 154 TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 39999999999988632222222 2 246899999988865
No 78
>PRK13201 ureB urease subunit beta; Reviewed
Probab=26.15 E-value=1.3e+02 Score=21.25 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=36.4
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEE----EEEecCCC---------CeEEEcCCee---EECCCCeEEEEEEec
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVA----FKVKTTSP---------KKYFVRPNTG---VVQPWDSCIIRVTLQ 75 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~va----FKVktT~p---------~~y~V~P~~G---~i~P~~s~~I~I~~~ 75 (131)
+.+..++++.- .....|+++|++++||- |-.==+++ .-|+..=+.| -.+||++.+|.+.-.
T Consensus 8 ~~~~~I~lN~g---r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~i 84 (136)
T PRK13201 8 TKSTEVEINNH---HPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEY 84 (136)
T ss_pred cCCCCeEeCCC---CCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 33445555532 34688999999999983 11111111 1244442333 468999999888755
Q ss_pred CC
Q 032878 76 AQ 77 (131)
Q Consensus 76 ~~ 77 (131)
++
T Consensus 85 gG 86 (136)
T PRK13201 85 AG 86 (136)
T ss_pred cC
Confidence 44
No 79
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=25.86 E-value=2.1e+02 Score=21.69 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=37.0
Q ss_pred eEEEEEE-ecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecC
Q 032878 27 GFCDLKV-INNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 27 ~~~~l~l-~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~ 76 (131)
.-+.++| .|.......|.-....++.|. .+..-.+.+|.+..+.|....
T Consensus 61 ~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~-~~~~~~~~~G~~Y~L~V~~~~ 110 (298)
T PF14054_consen 61 SGATVTIYEDGQGNEYLFEESSNNDGVYY-SSNSFRGRPGRTYRLEVETPG 110 (298)
T ss_pred CCcEEEEEeCCCcceEeecccCCCcceEE-ecccccccCCCEEEEEEEECC
Confidence 4588999 777777777776665557787 444448999999999999853
No 80
>PRK13198 ureB urease subunit beta; Reviewed
Probab=25.40 E-value=1.4e+02 Score=21.60 Aligned_cols=51 Identities=10% Similarity=0.039 Sum_probs=30.6
Q ss_pred eEEEEEEecCCCCeEEE----EEecCCC---------CeEEEcCCee---EECCCCeEEEEEEecCC
Q 032878 27 GFCDLKVINNTEHHVAF----KVKTTSP---------KKYFVRPNTG---VVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaF----KVktT~p---------~~y~V~P~~G---~i~P~~s~~I~I~~~~~ 77 (131)
....|+++|++++||-- -.==+|+ .-|+..=+.| -.+||++.+|.+.-.++
T Consensus 48 ~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG 114 (158)
T PRK13198 48 PVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPFGG 114 (158)
T ss_pred cEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEccC
Confidence 56889999999999831 1111111 1233332223 36889988888775554
No 81
>PRK13205 ureB urease subunit beta; Reviewed
Probab=25.22 E-value=1.3e+02 Score=21.79 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=36.4
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEE----EEEecCCC---------CeEEEcCCee---EECCCCeEEEEEEec
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVA----FKVKTTSP---------KKYFVRPNTG---VVQPWDSCIIRVTLQ 75 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~va----FKVktT~p---------~~y~V~P~~G---~i~P~~s~~I~I~~~ 75 (131)
+.+..|+++. ......|+++|++++||- |-.==+++ .-|+..=+.| -.+||++.+|.+.-.
T Consensus 8 ~~~g~IelN~---GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~i 84 (162)
T PRK13205 8 LSSESLTGNV---GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAI 84 (162)
T ss_pred cCCCCeEeCC---CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 3444566553 234688999999999983 11111111 1134332233 468999999888755
Q ss_pred CC
Q 032878 76 AQ 77 (131)
Q Consensus 76 ~~ 77 (131)
++
T Consensus 85 gG 86 (162)
T PRK13205 85 GG 86 (162)
T ss_pred cC
Confidence 44
No 82
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=24.18 E-value=1.4e+02 Score=22.83 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=30.6
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEE
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIR 71 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~ 71 (131)
+|.+.|..-.|.+.. ...+|+|+++-++-++..-.+.....-.+..=-|-||++..+.
T Consensus 141 lV~V~P~~~~~~~~~-----~~~~l~NtGNt~~~v~~~~~C~~~c~~~~~~~~lyPG~~~~l~ 198 (234)
T PRK15308 141 LLRVLPSDPRPALVT-----DGHHLLNTGNVRLGLIRAGNCDTTCHWQNIDRSVYPGGSADLP 198 (234)
T ss_pred EEEECCCCCcccccc-----cCCEEEecCcEEEEEEeeccccccccccccceEECCCCceecc
Confidence 455566544554441 2358999999888766653332221112222345566655544
No 83
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=24.16 E-value=1.2e+02 Score=17.90 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=10.0
Q ss_pred EEecCCCCeEEEEE
Q 032878 32 KVINNTEHHVAFKV 45 (131)
Q Consensus 32 ~l~N~s~~~vaFKV 45 (131)
++...+...||||+
T Consensus 58 ~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 58 KTDSSSGNKVAFKI 71 (71)
T ss_pred EeecCCCeEEEEEC
Confidence 34455678899996
No 84
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=22.54 E-value=1.1e+02 Score=20.29 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=19.0
Q ss_pred EEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEe
Q 032878 41 VAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (131)
Q Consensus 41 vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~ 74 (131)
+.|+|.-.....-.+.++.....||+.+++.|.-
T Consensus 85 ~~i~V~~~~~~~v~l~~~~~~~~Pg~~~~~~i~~ 118 (136)
T PF07703_consen 85 VWIEVEPCFELKVELTASPDEYKPGEEVTLRIKA 118 (136)
T ss_dssp EEEEBGCSGSSSEEEEESSSSBTTTSEEEEEEEE
T ss_pred EEEEecccccceEEEEEecceeCCCCEEEEEEEe
Confidence 3344544445555555555666666666666654
No 85
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=22.26 E-value=1.3e+02 Score=17.93 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=25.4
Q ss_pred EEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecC
Q 032878 28 FCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 28 ~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~ 76 (131)
-+.++|.|.... ..+...|...+.|.+. -|+| ..+.|.+....
T Consensus 16 ~a~V~l~~~~~~-~~~~~~Td~~G~f~~~----~l~~-g~Y~l~v~~~g 58 (82)
T PF13620_consen 16 GATVTLTDQDGG-TVYTTTTDSDGRFSFE----GLPP-GTYTLRVSAPG 58 (82)
T ss_dssp T-EEEET--TTT-ECCEEE--TTSEEEEE----EE-S-EEEEEEEEBTT
T ss_pred CEEEEEEEeeCC-CEEEEEECCCceEEEE----ccCC-EeEEEEEEECC
Confidence 377888876444 4688889999999987 2444 45677776544
No 86
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=22.05 E-value=2.1e+02 Score=19.94 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.6
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEEEEE
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAFKV 45 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKV 45 (131)
..|..+.|.++.+. .+++=|-.++.+.+-||-
T Consensus 97 ~i~P~vRF~Ge~gE--q~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 97 HIPPKVRFKGEPGE--QRTLFLFDPSGNALEFKG 128 (138)
T ss_pred ccCceEEecCCccc--eEEEEEECCCCCeeeeec
Confidence 45778999998876 688889999999999884
No 87
>PF11386 VERL: Vitelline envelope receptor for lysin; InterPro: IPR021526 VERL, the egg vitelline envelope (VE) receptor for lysin, is a giant unbranched glycoprotein comprising 30% of the vitelline envelope. Lysin binds to VERL and creates a hole as VERL molecules lose cohesion and splay apart. These proteins are important in the mediation of fertilisation [].
Probab=21.07 E-value=59 Score=20.64 Aligned_cols=26 Identities=15% Similarity=-0.065 Sum_probs=16.9
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCC
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNT 37 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s 37 (131)
-+|+-.+|.+|+.......|.|.|.+
T Consensus 23 ~~pg~CVf~GPY~Vp~ndsv~~YnVT 48 (78)
T PF11386_consen 23 DSPGMCVFWGPYSVPKNDSVVLYNVT 48 (78)
T ss_pred CCCccEEEecCcccCCCCeEEEEEEE
Confidence 46666677777766556666666643
No 88
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=20.89 E-value=2.5e+02 Score=19.32 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCCeEEEEEecCCC--CeEEEcCCeeEECCCCeEEEEEEec
Q 032878 37 TEHHVAFKVKTTSP--KKYFVRPNTGVVQPWDSCIIRVTLQ 75 (131)
Q Consensus 37 s~~~vaFKVktT~p--~~y~V~P~~G~i~P~~s~~I~I~~~ 75 (131)
....-|+-+-...+ +.|.++= =|+||+++.|.+++.
T Consensus 92 ~~G~~a~L~eq~~~~~~~F~~~V---NIppg~~v~v~l~Y~ 129 (130)
T smart00609 92 SQGKTAGLVRASGRSMEQFTVSV---NVAPGSKVTFELTYE 129 (130)
T ss_pred HcCCCeEEEEecCCccCcEEEEE---EeCCCCEEEEEEEEE
Confidence 44455666655666 7788776 599999999999874
No 89
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=20.44 E-value=1.1e+02 Score=21.09 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=14.3
Q ss_pred EEEEEecCCCCeEEEEEe--cCCCCeEEEcCC
Q 032878 29 CDLKVINNTEHHVAFKVK--TTSPKKYFVRPN 58 (131)
Q Consensus 29 ~~l~l~N~s~~~vaFKVk--tT~p~~y~V~P~ 58 (131)
-.|+|.+.+.-.+.++|. .....+|+||=.
T Consensus 28 dlv~l~~~~~~~~~~~v~~~~~~~~~YrIRiR 59 (143)
T PF03944_consen 28 DLVKLSNSGSLSIKIRVTINNSSSQKYRIRIR 59 (143)
T ss_dssp -EEEESSSCEECEEEEEEESSSSTEEEEEEEE
T ss_pred cEEEEcCCCceEEEEEEEecCCCCceEEEEEE
Confidence 344555544443444444 445556665533
No 90
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=20.40 E-value=2.5e+02 Score=18.05 Aligned_cols=48 Identities=6% Similarity=0.025 Sum_probs=34.2
Q ss_pred ceeEEEEEEecCC--CCeEEEEEecCCCCeEEEcCC-----eeEECCCCeEEEEE
Q 032878 25 KQGFCDLKVINNT--EHHVAFKVKTTSPKKYFVRPN-----TGVVQPWDSCIIRV 72 (131)
Q Consensus 25 ~~~~~~l~l~N~s--~~~vaFKVktT~p~~y~V~P~-----~G~i~P~~s~~I~I 72 (131)
+...+.+.|+|.+ ...+.||+-==+.+.+.|.|. .=.|.++++..|.-
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~ 86 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQA 86 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEE
Confidence 4578899999987 678889987666777777776 22466666655543
No 91
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=20.21 E-value=1.5e+02 Score=19.73 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=22.0
Q ss_pred eEEEEEecCCCCe--EEEcCCeeEECCCCeEEEEEEec
Q 032878 40 HVAFKVKTTSPKK--YFVRPNTGVVQPWDSCIIRVTLQ 75 (131)
Q Consensus 40 ~vaFKVktT~p~~--y~V~P~~G~i~P~~s~~I~I~~~ 75 (131)
+-|.-+....++. |.++= -|+|++++.|.|++.
T Consensus 83 ~~a~lle~~~~~~~~F~~~v---ni~p~~~v~i~l~Y~ 117 (118)
T PF08487_consen 83 KSAALLEQSDPNVEVFTVSV---NIPPNEEVTIELTYV 117 (118)
T ss_pred CCchhhcccCCCCcEEEEEE---EeCCCCEEEEEEEEE
Confidence 4444555555566 65553 589999999988864
Done!