Query 032878
Match_columns 131
No_of_seqs 104 out of 722
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:15:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z9l_A Vesicle-associated memb 100.0 2.1E-36 7.3E-41 210.1 16.0 123 3-129 4-127 (128)
2 2cri_A Vesicle-associated memb 100.0 3E-36 1E-40 214.0 15.6 122 6-131 11-133 (147)
3 1wic_A Hypothetical protein ri 100.0 5.6E-36 1.9E-40 213.8 9.0 120 6-130 15-137 (152)
4 1msp_A MSP, major sperm protei 100.0 9.3E-34 3.2E-38 196.6 16.7 123 4-130 3-126 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 7.6E-29 2.6E-33 168.0 12.6 104 10-127 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 3.5E-28 1.2E-32 166.1 14.7 106 8-127 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.7 7.2E-08 2.5E-12 65.3 8.7 84 4-94 20-104 (122)
8 3qbt_B Inositol polyphosphate 98.6 6.9E-07 2.3E-11 62.2 10.5 72 5-76 22-100 (140)
9 2e6j_A Hydin protein; PAPD, st 98.5 6.5E-07 2.2E-11 59.1 9.3 72 6-77 6-81 (112)
10 3qis_A Inositol polyphosphate 98.2 1.7E-05 5.8E-10 62.9 10.7 73 5-77 25-104 (366)
11 2qsv_A Uncharacterized protein 97.5 0.00056 1.9E-08 50.3 9.2 68 10-78 3-71 (220)
12 2qsv_A Uncharacterized protein 97.3 0.001 3.4E-08 48.9 8.4 70 6-77 116-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 96.5 0.062 2.1E-06 40.5 12.2 85 9-99 29-123 (257)
14 2co7_B SAFB chaperone, putativ 95.8 0.13 4.4E-06 37.9 10.5 86 8-99 12-102 (221)
15 2xg5_A PAPD, chaperone protein 95.6 0.22 7.4E-06 36.6 11.1 85 10-99 2-95 (218)
16 1klf_A FIMC chaperone, chapero 95.2 0.29 1E-05 35.5 10.5 84 10-99 2-92 (205)
17 4djm_A DRAB; chaperone, PILI; 95.1 0.23 7.9E-06 37.0 9.9 86 8-99 22-112 (239)
18 4ay0_A Chaperone protein CAF1M 95.1 0.67 2.3E-05 34.0 13.1 85 9-99 13-104 (218)
19 1l4i_A SFAE protein; periplasm 94.4 0.98 3.4E-05 32.7 13.7 83 10-96 2-91 (206)
20 3rfr_A PMOB; membrane, oxidore 93.2 0.49 1.7E-05 37.9 8.4 68 7-77 281-369 (419)
21 1yew_A Particulate methane mon 93.1 0.82 2.8E-05 36.2 9.5 69 8-77 248-337 (382)
22 3gfu_C Chaperone protein FAEE; 92.1 2.6 9E-05 31.0 14.9 84 10-99 2-92 (224)
23 2r39_A FIXG-related protein; s 91.4 1 3.5E-05 29.4 7.2 51 27-77 33-84 (118)
24 2xzz_A Protein-glutamine gamma 77.2 12 0.0004 23.9 8.2 61 16-77 9-74 (102)
25 3zy7_A AP-1 complex subunit ga 76.3 4 0.00014 27.0 4.4 81 27-111 31-121 (122)
26 3idu_A Uncharacterized protein 67.8 24 0.00081 23.4 9.5 69 23-100 31-100 (127)
27 3hn9_A Lamin-B1; structural ge 63.1 12 0.0004 24.8 4.4 41 29-70 25-71 (123)
28 2huh_A Putative DNA mismatch r 59.3 19 0.00066 24.7 5.1 67 27-100 28-94 (147)
29 3e38_A Two-domain protein cont 58.7 18 0.00062 28.0 5.4 65 29-100 270-334 (343)
30 4gio_A Putative lipoprotein; u 56.9 28 0.00096 22.4 5.4 51 23-73 34-90 (107)
31 2iaa_C Azurin; quinoprotein, t 55.2 9.5 0.00033 25.3 2.9 63 9-74 11-98 (128)
32 1c7s_A Beta-N-acetylhexosamini 52.3 26 0.00088 30.7 5.8 50 26-75 39-110 (858)
33 3vta_A Cucumisin; subtilisin-l 51.9 84 0.0029 26.0 8.8 50 27-76 539-591 (621)
34 1ifr_A Lamin A/C; immunoglobul 49.6 39 0.0013 22.2 5.2 45 29-75 19-69 (121)
35 2ccw_A Azurin II, AZN-2; elect 49.4 9.9 0.00034 25.2 2.3 61 9-75 12-100 (129)
36 3o0l_A Uncharacterized protein 49.2 32 0.0011 22.2 4.7 51 23-73 36-93 (112)
37 3jt0_A Lamin-B1; structural ge 46.7 46 0.0016 22.6 5.4 42 29-70 38-84 (144)
38 1ex0_A Coagulation factor XIII 43.8 1.6E+02 0.0054 25.4 9.3 61 16-77 633-698 (731)
39 1gyu_A Adapter-related protein 43.4 71 0.0024 21.3 6.4 81 27-111 49-139 (140)
40 3ndz_E Endoglucanase D; cellot 43.2 63 0.0021 20.6 5.5 49 27-75 17-86 (107)
41 2lll_A Lamin-B2; immunoglobuli 42.5 43 0.0015 22.6 4.7 42 29-70 34-81 (139)
42 1vjj_A Protein-glutamine gluta 42.2 1.1E+02 0.0038 26.1 8.0 58 16-77 597-663 (692)
43 2q3z_A Transglutaminase 2; tra 41.5 1.6E+02 0.0054 25.2 8.9 70 16-93 590-667 (687)
44 1nwp_A Azurin; electron transp 38.3 22 0.00076 23.4 2.6 64 9-75 12-100 (128)
45 1ufg_A Lamin A, nuclear lamin; 38.1 86 0.0029 21.4 5.7 45 29-75 50-100 (151)
46 1wm3_A Ubiquitin-like protein 37.6 41 0.0014 19.5 3.5 21 30-50 3-23 (72)
47 3isy_A Bsupi, intracellular pr 37.4 73 0.0025 20.9 5.1 25 24-48 17-41 (120)
48 2x3c_A Toxic extracellular end 36.1 1.5E+02 0.005 22.8 8.1 68 24-95 35-126 (343)
49 1iu1_A Gamma1-adaptin; coated 35.0 1E+02 0.0035 20.7 7.0 67 27-97 55-127 (146)
50 1cuo_A Protein (azurin ISO-2); 34.9 21 0.00072 23.5 2.1 17 59-75 84-100 (129)
51 3i6s_A Subtilisin-like proteas 33.7 1.2E+02 0.0042 25.3 7.0 51 27-77 560-613 (649)
52 4ep8_B Urease subunit beta; al 32.4 46 0.0016 21.4 3.3 63 12-77 8-86 (101)
53 2io0_B Small ubiquitin-related 32.1 57 0.0019 20.0 3.7 23 28-50 5-27 (91)
54 2e9g_A AP-1 complex subunit ga 31.8 56 0.0019 21.5 3.8 67 27-97 40-112 (131)
55 1tza_A APAG protein, SOR45; st 28.5 70 0.0024 21.4 3.9 69 1-69 1-82 (134)
56 1xf1_A C5A peptidase, SCP; hyd 26.7 1.5E+02 0.0052 25.8 6.6 51 26-76 500-564 (926)
57 2l0d_A Cell surface protein; s 26.6 1E+02 0.0035 19.8 4.4 70 24-100 18-88 (114)
58 2d07_B Ubiquitin-like protein 25.3 88 0.003 19.1 3.7 23 28-50 17-39 (93)
59 4h4n_A Hypothetical protein BA 25.2 1E+02 0.0036 17.7 4.2 28 9-37 10-40 (67)
60 2io1_B Small ubiquitin-related 24.8 1.1E+02 0.0038 18.7 4.1 23 28-50 7-29 (94)
61 3vta_A Cucumisin; subtilisin-l 24.5 94 0.0032 25.7 4.7 27 9-36 566-592 (621)
62 3ay2_A Lipid modified azurin p 23.6 37 0.0013 23.6 1.8 16 59-74 123-138 (167)
63 1yyc_A LEA protein, putative l 23.3 1.9E+02 0.0065 20.0 6.2 51 26-76 63-119 (174)
64 1so9_A Cytochrome C oxidase as 22.6 2E+02 0.0067 20.0 7.5 70 24-99 61-147 (164)
65 4hci_A Cupredoxin 1; structura 22.4 1.3E+02 0.0046 18.0 6.5 51 12-74 25-75 (100)
66 3kyd_D Small ubiquitin-related 22.1 1.1E+02 0.0036 19.9 3.7 24 27-50 39-62 (115)
67 1t0p_B ICAM-3, intercellular a 21.8 71 0.0024 19.8 2.7 25 53-77 5-29 (86)
68 2lv4_A Putative outer membrane 21.7 77 0.0026 21.3 3.0 35 47-81 45-79 (146)
69 2zou_A Spondin-1; beta-sandwic 21.2 66 0.0022 21.6 2.6 46 46-98 17-64 (149)
70 4ubp_B Protein (urease (chain 20.9 77 0.0026 21.1 2.8 52 26-77 25-92 (126)
71 4ac7_B Urease subunit beta; hy 20.9 77 0.0026 21.1 2.8 52 26-77 25-92 (126)
72 2g30_A AP-2 complex subunit be 20.8 2.5E+02 0.0087 20.5 6.5 53 24-77 54-112 (258)
73 3a1j_C Cell cycle checkpoint p 20.6 1.4E+02 0.0047 21.6 4.5 49 7-56 164-214 (263)
74 1wz0_A Ubiquitin-like protein 20.0 1.1E+02 0.0039 19.2 3.5 24 27-50 23-46 (104)
No 1
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=2.1e-36 Score=210.15 Aligned_cols=123 Identities=32% Similarity=0.539 Sum_probs=109.8
Q ss_pred CCCCCccEEEcCC-eEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCC
Q 032878 3 ADGGNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (131)
Q Consensus 3 ~~~~~~~l~v~P~-~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~ 81 (131)
.+....+|.++|. +|.|.+++++.+++.|+|+|+++++||||||||+|.+|+|+|++|+|+||+++.|.|+++++.. +
T Consensus 4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~ 82 (128)
T 1z9l_A 4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-D 82 (128)
T ss_dssp CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-C
T ss_pred CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-C
Confidence 3456789999996 9999999999999999999999999999999999999999999999999999999999999743 4
Q ss_pred CCCCCCCEEEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEEEe
Q 032878 82 PDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLY 129 (131)
Q Consensus 82 ~~~~~~dkF~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~~~ 129 (131)
++.+++|||+||++.++++. .++ .++|++..+..++++||||+|.
T Consensus 83 p~~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp TTCCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence 45578999999999999754 345 5789888888999999999996
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=3e-36 Score=214.01 Aligned_cols=122 Identities=31% Similarity=0.548 Sum_probs=109.1
Q ss_pred CCccEEEcCC-eEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCC
Q 032878 6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDM 84 (131)
Q Consensus 6 ~~~~l~v~P~-~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~ 84 (131)
...+|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|+|+|++|+|+||+++.|.|+++++. .+++.
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~-~~p~~ 89 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFD-YDPNE 89 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCC-CCTTC
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCc-CCccc
Confidence 4679999996 999999999999999999999999999999999999999999999999999999999999974 34456
Q ss_pred CCCCEEEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEEEecC
Q 032878 85 QCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYSA 131 (131)
Q Consensus 85 ~~~dkF~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~~~~~ 131 (131)
+++|||+||++.++++. .++ .++|++..+..++++||||+|+++
T Consensus 90 ~~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p 133 (147)
T 2cri_A 90 KSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMP 133 (147)
T ss_dssp CSCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECS
T ss_pred cCCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecC
Confidence 78999999999998753 344 578988878899999999999753
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=5.6e-36 Score=213.80 Aligned_cols=120 Identities=27% Similarity=0.347 Sum_probs=107.9
Q ss_pred CCccEEEcCC-eEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCC
Q 032878 6 GNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDM 84 (131)
Q Consensus 6 ~~~~l~v~P~-~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~ 84 (131)
..++|.|+|. +|.|.+++++..++.|+|+|+++++||||||||+|++|+|+|+.|+|+||+++.|.|+|+++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4689999998 9999999988889999999999999999999999999999999999999999999999999743 2
Q ss_pred CCCCEEEEEEEEcC--CCCCCCCCCcchhcccCCCceeEEEeEEEEec
Q 032878 85 QCKDKFLLQSTIVP--SNTDVDDLPPDTFNKDSGKTIEECKLRVVLYS 130 (131)
Q Consensus 85 ~~~dkF~V~~~~~~--~~~~~~~~~~~~f~~~~~~~i~~~kL~v~~~~ 130 (131)
.++|||+||++.++ ++.+.+++. ++|++..+..++++||||+|++
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~ 137 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVE 137 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECC
Confidence 57999999999998 455555564 7898888889999999999985
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=9.3e-34 Score=196.61 Aligned_cols=123 Identities=16% Similarity=0.293 Sum_probs=107.1
Q ss_pred CCCCccEEEcCC-eEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCC
Q 032878 4 DGGNQLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (131)
Q Consensus 4 ~~~~~~l~v~P~-~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~ 82 (131)
+-+...|.++|. +|.|++|+++.+++.|+|+|+|+++||||||||+|.+|+|+|++|+|+||+++.|.|+++++.+.++
T Consensus 3 s~~~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~ 82 (126)
T 1msp_A 3 SVPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATE 82 (126)
T ss_dssp CCCCCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGS
T ss_pred CCCCCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCC
Confidence 456678999997 9999999999999999999999999999999999999999999999999999999999999865554
Q ss_pred CCCCCCEEEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEEEec
Q 032878 83 DMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVVLYS 130 (131)
Q Consensus 83 ~~~~~dkF~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~~~~ 130 (131)
+. .+|||+||++.++++.+ +++..+||.. +..+..++|+|.|..
T Consensus 83 ~~-~kDKf~Vq~~~~p~~~~-~~~~~~wf~~--d~~~~~k~L~V~Yn~ 126 (126)
T 1msp_A 83 DL-NNDRITIEWTNTPDGAA-KQFRREWFQG--DGMVRRKNLPIEYNL 126 (126)
T ss_dssp CC-SSCEEEEEEEECCTTCC-SSCCTHHHHS--SSCCEEEEEEEEEEC
T ss_pred cc-CCCEEEEEEEECCCCcc-hhhhHHhhcC--CCceEEEEEEEEecC
Confidence 43 59999999999998763 4676555544 346899999999963
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=7.6e-29 Score=167.99 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=88.0
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCE
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDK 89 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~dk 89 (131)
|.|+|.+|.|.++.+ .+.|+|+|++++++|||||||+|.+|+|+|+.|+|+||++++|.|+++++ + .++||
T Consensus 3 L~i~P~~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 789999999998743 69999999999999999999999999999999999999999999999995 2 36899
Q ss_pred EEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEE
Q 032878 90 FLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV 127 (131)
Q Consensus 90 F~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~ 127 (131)
|+||++.++++. .+. .++|++... .++.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998653 233 467887543 556666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=3.5e-28 Score=166.09 Aligned_cols=106 Identities=23% Similarity=0.370 Sum_probs=90.3
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCCCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCK 87 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~ 87 (131)
-++.++|.+|.|.+.. ..+.|+|+|+++.++|||||||+|+.|+|+|+.|+|+||++++|.|+++++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 4789999999999763 389999999999999999999999999999999999999999999999997 2 368
Q ss_pred CEEEEEEEEcCCCCCCCCCCcchhcccCCCceeEEEeEEE
Q 032878 88 DKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRVV 127 (131)
Q Consensus 88 dkF~V~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~kL~v~ 127 (131)
|||+||++.++++. .+. .++|++..+ .++.+|++.
T Consensus 80 DKflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence 99999999998643 233 468888543 677777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=7.2e-08 Score=65.27 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=64.0
Q ss_pred CCCCccEEEcCCeEEEecc-CCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCC
Q 032878 4 DGGNQLISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (131)
Q Consensus 4 ~~~~~~l~v~P~~l~F~~~-~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~ 82 (131)
..+...|.+ |..|.|..- .+......+.|+|.++.++.|++++. .-|.|.|+.|.|+||++..|.|++.|...
T Consensus 20 ~~~~~~l~~-p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~--- 93 (122)
T 2ys4_A 20 RGARAILDF-PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSV--- 93 (122)
T ss_dssp CSCCCCCCC-CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSS---
T ss_pred EcCCcEECC-CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCC---
Confidence 334445555 667887643 35567889999999999999999985 47999999999999999999999999731
Q ss_pred CCCCCCEEEEEE
Q 032878 83 DMQCKDKFLLQS 94 (131)
Q Consensus 83 ~~~~~dkF~V~~ 94 (131)
......+.+.+
T Consensus 94 -g~~~~~l~v~~ 104 (122)
T 2ys4_A 94 -GDHSGRLIVCY 104 (122)
T ss_dssp -BCCCCBCEEEE
T ss_pred -ccEEEEEEEEE
Confidence 12345555554
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.58 E-value=6.9e-07 Score=62.16 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=62.3
Q ss_pred CCCccEEEcCCeEEEec-cCCceeEEEEEEecCCCCeEEEEEecC------CCCeEEEcCCeeEECCCCeEEEEEEecC
Q 032878 5 GGNQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTT------SPKKYFVRPNTGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 5 ~~~~~l~v~P~~l~F~~-~~~~~~~~~l~l~N~s~~~vaFKVktT------~p~~y~V~P~~G~i~P~~s~~I~I~~~~ 76 (131)
++.+.+.+++.+|.|-. .++...++.|+|+|++.-+.-|++... .+..+.|.|..|.|.||+++.|.|++.-
T Consensus 22 e~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 22 DFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp HTSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred ccCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 35578999999999985 367788999999999999999999853 3457999999999999999999999874
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=6.5e-07 Score=59.12 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=61.1
Q ss_pred CCccEEEcCCeEEEecc-CCceeEEEEEEecCCCCeEEEEEecCCC---CeEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 6 GNQLISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSP---KKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 6 ~~~~l~v~P~~l~F~~~-~~~~~~~~l~l~N~s~~~vaFKVktT~p---~~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
-...+.+++..|.|-.- .+....+.++|+|+++-++.|++..... ..|.+.|+.|.|+||++..|.|++.+.
T Consensus 6 ~~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 6 SGPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 34678999999999854 4667888999999999999999964322 469999999999999999999999995
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=98.17 E-value=1.7e-05 Score=62.93 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCCccEEEcCCeEEEec-cCCceeEEEEEEecCCCCeEEEEEecC------CCCeEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 5 GGNQLISVHPEELKFIF-ELEKQGFCDLKVINNTEHHVAFKVKTT------SPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 5 ~~~~~l~v~P~~l~F~~-~~~~~~~~~l~l~N~s~~~vaFKVktT------~p~~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
+.-+.+.|++.+|.|.. .++...++.|+|+|++.-+..|++... .+..+.|.|..|.|.||+++.|.|++...
T Consensus 25 ~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 25 DFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp ---CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred ccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 45678999999999974 467789999999999999999999753 23448899999999999999999998654
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=97.54 E-value=0.00056 Score=50.31 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=58.2
Q ss_pred EEEcCCeEEEecc-CCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCC
Q 032878 10 ISVHPEELKFIFE-LEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQR 78 (131)
Q Consensus 10 l~v~P~~l~F~~~-~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~ 78 (131)
|.++++.+.|.-- .+......++++|.++.++-++.-.. |..+.+.+..+.|+||++..|.|++.+..
T Consensus 3 i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 3 LQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp EEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred eEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 8899999999854 34456679999999999999997644 78889999999999999999999998753
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=97.35 E-value=0.001 Score=48.95 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEE-EEecCCCCeEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 6 GNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAF-KVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 6 ~~~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaF-KVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
....+.++ ..+.|-.-.+......++|+|.++.++.. +|++++ +...+.++.+.|+||++..|.|++.+.
T Consensus 116 ~~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 116 QTGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp GCCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred cCCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 44567888 88888733366778899999999999998 888765 789999999999999999999999885
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=96.53 E-value=0.062 Score=40.54 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=59.2
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCC----------CeEEEcCCeeEECCCCeEEEEEEecCCC
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSP----------KKYFVRPNTGVVQPWDSCIIRVTLQAQR 78 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p----------~~y~V~P~~G~i~P~~s~~I~I~~~~~~ 78 (131)
-|.+++..+.|+... ....|+|+|.++.++.-.+...+. .-|.|.|+.--|+||+...|.|.....
T Consensus 29 ~v~i~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~- 104 (257)
T 3q48_A 29 GLIAQGTRVVFPASE---REVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA- 104 (257)
T ss_dssp --CCSCSEEEEETTC---SEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-
T ss_pred eEEEcceEEEEeCCC---cEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-
Confidence 467778888888643 258999999999887766654321 239999999999999999999987764
Q ss_pred CCCCCCCCCCEEEEEEEEcCC
Q 032878 79 ESPPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 79 ~~~~~~~~~dkF~V~~~~~~~ 99 (131)
..|.|.+ --|-+...++|+
T Consensus 105 ~LP~DrE--Slf~lnv~eIPp 123 (257)
T 3q48_A 105 PLPTDRE--SLFWLNILEVPP 123 (257)
T ss_dssp CCCSSSC--EEEEEEEEEECC
T ss_pred CCCCCce--eEEEEEeeecCC
Confidence 2455532 345455555554
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=95.80 E-value=0.13 Score=37.85 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=62.0
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCC-----CCeEEEcCCeeEECCCCeEEEEEEecCCCCCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~-----p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~ 82 (131)
--|.+++..+.|+.... ...|+|+|.++.+..-.+...+ ..-|.|.|+.--|+||+...|.|.+... ..|.
T Consensus 12 A~v~i~~TRvIy~~~~k---~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~ 87 (221)
T 2co7_B 12 FSVKLGATRVIYHAGTA---GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPT 87 (221)
T ss_dssp EECEESCSEEEEETTSS---CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCS
T ss_pred EEEEEcceEEEEcCCCC---EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCC
Confidence 34778888899986543 5789999999988776665422 2349999999999999999999988763 3555
Q ss_pred CCCCCCEEEEEEEEcCC
Q 032878 83 DMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 83 ~~~~~dkF~V~~~~~~~ 99 (131)
|. ..-|-+...++|+
T Consensus 88 Dr--Eslf~lnv~eIPp 102 (221)
T 2co7_B 88 DR--ETLQWVCIKAVPP 102 (221)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--eEEEEEEeecCCC
Confidence 53 2344455555554
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=95.63 E-value=0.22 Score=36.57 Aligned_cols=85 Identities=13% Similarity=0.203 Sum_probs=60.1
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCC-eEEEEEecCC-------CCeEEEcCCeeEECCCCeEEEEEEecCC-CCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQ-RES 80 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~-~vaFKVktT~-------p~~y~V~P~~G~i~P~~s~~I~I~~~~~-~~~ 80 (131)
|.+++..+.|+.... ...|+|+|.++. +..-.+...+ ..-|.|.|+.--|+||+...|.|.+... ...
T Consensus 2 v~l~~TRvIy~~~~k---~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSEK---SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTSS---EEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCCC---EEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 567888888886543 689999999988 8776665432 2349999999999999999999988762 134
Q ss_pred CCCCCCCCEEEEEEEEcCC
Q 032878 81 PPDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 81 ~~~~~~~dkF~V~~~~~~~ 99 (131)
|.|. ..-|-+...++|+
T Consensus 79 P~Dr--ESlf~lnv~eIPp 95 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPP 95 (218)
T ss_dssp CSSS--CEEEEEEEEEECC
T ss_pred CCCc--eEEEEEEeecCCC
Confidence 5553 2334444444443
No 16
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=95.19 E-value=0.29 Score=35.51 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=59.5
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCC-eEEEEEecCC-----CCeEEEcCCeeEECCCCeEEEEEEe-cCCCCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTL-QAQRESPP 82 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~-~vaFKVktT~-----p~~y~V~P~~G~i~P~~s~~I~I~~-~~~~~~~~ 82 (131)
|.+++..+.|+... ....|+|+|.++. +..-.+...+ ..-|.|.|+.--|+||+...|.|.. ... ..|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 56788888888653 3689999999987 7766664322 2359999999999999999999988 552 3455
Q ss_pred CCCCCCEEEEEEEEcCC
Q 032878 83 DMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 83 ~~~~~dkF~V~~~~~~~ 99 (131)
|. ..-|-+...++|+
T Consensus 78 Dr--Eslf~lnv~eIPp 92 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPS 92 (205)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--eEEEEEEeEecCC
Confidence 43 2344444444543
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=95.12 E-value=0.23 Score=37.00 Aligned_cols=86 Identities=17% Similarity=0.192 Sum_probs=60.3
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCC-----CCeEEEcCCeeEECCCCeEEEEEEecCCCCCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~-----p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~ 82 (131)
--|.|++..+.|+.... ...|+|+|.++.++.-.+...+ ..-|.|.|+.--|+||+...|.|.+... ..|.
T Consensus 22 a~v~l~~TRvIy~~~~k---~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 97 (239)
T 4djm_A 22 FSLHLGATRVVYNPASS---GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPP 97 (239)
T ss_dssp ECCEESCSEEEECTTSS---CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCS
T ss_pred EeEEEcceEEEEeCCCC---EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 45678888888886532 5889999999888665554211 2349999999999999999999987664 2455
Q ss_pred CCCCCCEEEEEEEEcCC
Q 032878 83 DMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 83 ~~~~~dkF~V~~~~~~~ 99 (131)
|. ..-|-+...++|+
T Consensus 98 DR--ESlf~lnv~eIPp 112 (239)
T 4djm_A 98 DR--ESLQWICVKGIPP 112 (239)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--eEEEEEEEEecCC
Confidence 53 2344444445554
No 18
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=95.10 E-value=0.67 Score=33.98 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=60.3
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCC-------CCeEEEcCCeeEECCCCeEEEEEEecCCCCCC
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTS-------PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~-------p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~ 81 (131)
-|.++-..+.|+... ....|+|+|.++.+..-.....+ ..-|.|.|+.--|+||+...|.|..... ..|
T Consensus 13 gv~l~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP 88 (218)
T 4ay0_A 13 GVTIGESRIIYPLDA---AGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFP 88 (218)
T ss_dssp CEEESCCEEEEETTC---SCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCC
T ss_pred eEEECceEEEECCCC---cEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCC
Confidence 477788888887543 25889999999988766654311 1239999999999999999999988764 345
Q ss_pred CCCCCCCEEEEEEEEcCC
Q 032878 82 PDMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 82 ~~~~~~dkF~V~~~~~~~ 99 (131)
.|. .--|-+...++|+
T Consensus 89 ~DR--ESlf~lnv~eIPp 104 (218)
T 4ay0_A 89 RDK--ESLKWLCVKGIPP 104 (218)
T ss_dssp SSS--CEEEEEEEEEECC
T ss_pred cCc--EEEEEEEEEecCC
Confidence 542 2335555555554
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=94.40 E-value=0.98 Score=32.67 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=58.4
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCC-CeEEEEEecCC-----CCeEEEcCCeeEECCCCeEEEEEE-ecCCCCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTE-HHVAFKVKTTS-----PKKYFVRPNTGVVQPWDSCIIRVT-LQAQRESPP 82 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~-~~vaFKVktT~-----p~~y~V~P~~G~i~P~~s~~I~I~-~~~~~~~~~ 82 (131)
|.+++..+.|+... ....|+|+|.++ .+..-.+...+ ..-|.|.|+.--|+||+...|.|. +.. ...|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 56788888888653 368999999986 77766665422 234999999999999999999998 654 23555
Q ss_pred CCCCCCEEEEEEEE
Q 032878 83 DMQCKDKFLLQSTI 96 (131)
Q Consensus 83 ~~~~~dkF~V~~~~ 96 (131)
|.+.--.|.|.-++
T Consensus 78 DrEslf~lnv~eIP 91 (206)
T 1l4i_A 78 DRESLFWVNVKAIP 91 (206)
T ss_dssp SSCEEEEEEEEEEE
T ss_pred CceEEEEEEeecCC
Confidence 53333344444444
No 20
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=93.15 E-value=0.49 Score=37.90 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=52.2
Q ss_pred CccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEE---------------------cCCeeEECCC
Q 032878 7 NQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFV---------------------RPNTGVVQPW 65 (131)
Q Consensus 7 ~~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V---------------------~P~~G~i~P~ 65 (131)
...+.++-..-+|.-| ++..+-+++++|.++.+|-..==+|++-+|.= .|+ -|+||
T Consensus 281 ~~~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 281 KEQVTTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp SCCCEEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CCceEEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 4556666666677755 67789999999999999987766777777651 223 59999
Q ss_pred CeEEEEEEecCC
Q 032878 66 DSCIIRVTLQAQ 77 (131)
Q Consensus 66 ~s~~I~I~~~~~ 77 (131)
|+.+++|+.+.-
T Consensus 358 ETrt~~V~a~da 369 (419)
T 3rfr_A 358 ESKEIVVKIQDA 369 (419)
T ss_dssp CEEEEEEEEECH
T ss_pred cceEEEEEeehH
Confidence 999999998763
No 21
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=93.07 E-value=0.82 Score=36.21 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=50.4
Q ss_pred ccEEEcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEE---------cCC------------eeEECCCC
Q 032878 8 QLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFV---------RPN------------TGVVQPWD 66 (131)
Q Consensus 8 ~~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V---------~P~------------~G~i~P~~ 66 (131)
..+.++...-+|.-| ++..+-+++++|.++.+|-..==+|+.-+|.- .|. ..-|+|||
T Consensus 248 ~~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGE 326 (382)
T 1yew_A 248 PTVSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGE 326 (382)
T ss_dssp CSEEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTC
T ss_pred CceEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCc
Confidence 345555555566644 67889999999999999988777777777643 231 12389999
Q ss_pred eEEEEEEecCC
Q 032878 67 SCIIRVTLQAQ 77 (131)
Q Consensus 67 s~~I~I~~~~~ 77 (131)
+.+|.|+.+.-
T Consensus 327 Tr~~~v~a~da 337 (382)
T 1yew_A 327 TRTVDVTASDA 337 (382)
T ss_dssp EEEEEEEEECH
T ss_pred eeEEEEEeehH
Confidence 99999998764
No 22
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=92.14 E-value=2.6 Score=30.96 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=54.8
Q ss_pred EEEcCCeEEEeccCCceeEEEEEEecCCCC-eEEEEEecC--C----CCeEEEcCCeeEECCCCeEEEEEEecCCCCCCC
Q 032878 10 ISVHPEELKFIFELEKQGFCDLKVINNTEH-HVAFKVKTT--S----PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPP 82 (131)
Q Consensus 10 l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~-~vaFKVktT--~----p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~ 82 (131)
+.++...+.|+.... ...|+|+|.++. +..-.+... . ..-|.|.|+.--|+||+...|.|.+... ..|.
T Consensus 2 ~~l~~TRvIy~~~~k---~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGDKD---ALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETTSS---CEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCCCc---eEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 456666788886432 588999999875 543333321 1 2249999999999999999999987653 3455
Q ss_pred CCCCCCEEEEEEEEcCC
Q 032878 83 DMQCKDKFLLQSTIVPS 99 (131)
Q Consensus 83 ~~~~~dkF~V~~~~~~~ 99 (131)
|.+ .-|-+...++|+
T Consensus 78 DRE--Slf~lnv~eIPp 92 (224)
T 3gfu_C 78 DKE--SVYWLNLQDIPP 92 (224)
T ss_dssp SSC--EEEEEEEEEECC
T ss_pred Cce--EEEEEEeecCCC
Confidence 432 334444444443
No 23
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=91.37 E-value=1 Score=29.45 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=39.4
Q ss_pred eEEEEEEecCCCCeEEEEEecCCCCeEEE-cCCeeEECCCCeEEEEEEecCC
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFV-RPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p~~y~V-~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
-...|+|.|.+.++..|.++....+.+.+ .|..=.|+||+...+.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 45779999999999999999877444554 4555688999988888777554
No 24
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=77.17 E-value=12 Score=23.95 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=43.3
Q ss_pred eEEEecc--CCceeEEEEEEecCC---CCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 16 ELKFIFE--LEKQGFCDLKVINNT---EHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 16 ~l~F~~~--~~~~~~~~l~l~N~s---~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
.+..... -++...+.++++|+= -....|.|--..-.+=... ..|-|+||+++.+.+.+.|.
T Consensus 9 ~I~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~ 74 (102)
T 2xzz_A 9 SLTLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPV 74 (102)
T ss_dssp EEEESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCC
T ss_pred EEEECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecC
Confidence 4444433 367789999999964 4677888876554332222 24779999999999999886
No 25
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=76.28 E-value=4 Score=26.99 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=47.3
Q ss_pred eEEEEEEecCCCCeE-EEEEecCCCCe--EEEcCCee-EECC--CCeEEEEEEecCCCCCCCCCCCCCEEEEEEEEcCCC
Q 032878 27 GFCDLKVINNTEHHV-AFKVKTTSPKK--YFVRPNTG-VVQP--WDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (131)
Q Consensus 27 ~~~~l~l~N~s~~~v-aFKVktT~p~~--y~V~P~~G-~i~P--~~s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~~~~ 100 (131)
..-.++.+|.+..+| -|.++.-.|.. -...|..| .|+| +..++-.+.+.... ....+=|+.|.|..-...
T Consensus 31 ~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~----~~~lklR~klsY~~~g~~ 106 (122)
T 3zy7_A 31 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTFNWNGYK 106 (122)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTT----CCCCCEEEEEEEEETTEE
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCC----CCCEEEEEEEEEEECCEE
Confidence 455677789875443 35555555555 45557777 6898 66665555443321 123567777877743321
Q ss_pred ----CCCCCCCcchh
Q 032878 101 ----TDVDDLPPDTF 111 (131)
Q Consensus 101 ----~~~~~~~~~~f 111 (131)
.+..+++.+.|
T Consensus 107 ~~E~~~v~~fp~~~~ 121 (122)
T 3zy7_A 107 VQSEAEVNNFPPQSW 121 (122)
T ss_dssp EEEEEEECCCCGGGT
T ss_pred EEEEEEECCCChhhC
Confidence 23456766666
No 26
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=67.75 E-value=24 Score=23.39 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=48.4
Q ss_pred CCceeEEEEEEecCCCCe-EEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCEEEEEEEEcCCC
Q 032878 23 LEKQGFCDLKVINNTEHH-VAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (131)
Q Consensus 23 ~~~~~~~~l~l~N~s~~~-vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~~~~ 100 (131)
.+....-.++++|.+... =+|+|+-...+...-.-..+ |+||++..|.+...+.. ...+.|....-+++
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 366788899999998644 67888866666655443444 99999999999987531 34456666655544
No 27
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=63.06 E-value=12 Score=24.82 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=28.0
Q ss_pred EEEEEecCCCCeEE---EEEecCCCC---eEEEcCCeeEECCCCeEEE
Q 032878 29 CDLKVINNTEHHVA---FKVKTTSPK---KYFVRPNTGVVQPWDSCII 70 (131)
Q Consensus 29 ~~l~l~N~s~~~va---FKVktT~p~---~y~V~P~~G~i~P~~s~~I 70 (131)
..++|.|.+++.+. |+++-...+ .| .-|+.=+|+||++++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y-~Fp~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSY-KYTSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEE-ECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEE-EcCCCcEECCCCEEEE
Confidence 46888898877765 777644332 34 4466668999998664
No 28
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=59.32 E-value=19 Score=24.73 Aligned_cols=67 Identities=10% Similarity=0.166 Sum_probs=51.1
Q ss_pred eEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCEEEEEEEEcCCC
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~~~~ 100 (131)
..-.+-|.|.|+..+.|-.-+...+.+..+ ..|.|+|+....|.=.-... ...-.++.||.+.--.+
T Consensus 28 t~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~e------ln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 28 TPFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDV------LNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CCEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGG------GGGCSSEEEEEEEECSS
T ss_pred cceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhH------hcCCceEEEEEEEEcCC
Confidence 345678999999999999988887887666 68999999998876443331 22457889998887654
No 29
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=58.66 E-value=18 Score=28.01 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=48.5
Q ss_pred EEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCEEEEEEEEcCCC
Q 032878 29 CDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (131)
Q Consensus 29 ~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~~~~ 100 (131)
-.+.|+|.++- -|.++-+++..|.+.+..--|+|+++..+.|......+ ...=+|-|.-+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecCC
Confidence 57888998876 46677788999999999999999999999997654321 2345666665555443
No 30
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=56.88 E-value=28 Score=22.37 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=36.9
Q ss_pred CCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCC------eeEECCCCeEEEEEE
Q 032878 23 LEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPN------TGVVQPWDSCIIRVT 73 (131)
Q Consensus 23 ~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~------~G~i~P~~s~~I~I~ 73 (131)
.++.....++++|.++..+.||+.==..+.+.|.+. .=.|.++++..|.-.
T Consensus 34 ~nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~v 90 (107)
T 4gio_A 34 SNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKL 90 (107)
T ss_dssp TTSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEE
Confidence 355677889999999999999998666677777542 235777776665543
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=55.24 E-value=9.5 Score=25.30 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=36.3
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCCCe-----EEEEEecCC-------------C-CeEE------EcCCeeEEC
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHH-----VAFKVKTTS-------------P-KKYF------VRPNTGVVQ 63 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~-----vaFKVktT~-------------p-~~y~------V~P~~G~i~ 63 (131)
-+.++|.+|+.+.+.+ +-.++++|.+.-+ --|-+-+.. + ..|. +.-..++|.
T Consensus 11 ~m~F~p~~i~V~k~G~---~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 87 (128)
T 2iaa_C 11 SMQFNTKSIVVDKTCK---EFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIG 87 (128)
T ss_dssp TSCBSCSEEEECTTCS---EEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CceEecCEEEEecCCc---EEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeC
Confidence 3566788877744433 4679999987532 223332221 0 0110 111245789
Q ss_pred CCCeEEEEEEe
Q 032878 64 PWDSCIIRVTL 74 (131)
Q Consensus 64 P~~s~~I~I~~ 74 (131)
||++..|++..
T Consensus 88 pGes~~vtf~~ 98 (128)
T 2iaa_C 88 GGETDSVTFDV 98 (128)
T ss_dssp TTCEEEEEEES
T ss_pred CCCEEEEEEec
Confidence 99999999985
No 32
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=52.27 E-value=26 Score=30.70 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=35.5
Q ss_pred eeEEEEEEecCC------CCeEE--------------EEEecCCCCeEEEcCCeeE--ECCCCeEEEEEEec
Q 032878 26 QGFCDLKVINNT------EHHVA--------------FKVKTTSPKKYFVRPNTGV--VQPWDSCIIRVTLQ 75 (131)
Q Consensus 26 ~~~~~l~l~N~s------~~~va--------------FKVktT~p~~y~V~P~~G~--i~P~~s~~I~I~~~ 75 (131)
.-+..|+|+|.+ +=.|. |+|..-+-+.|.+.|.-++ |+||++..|.++..
T Consensus 39 ~~~~~~tl~n~~~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~~ 110 (858)
T 1c7s_A 39 CNRVLFTLSNDGQAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVAE 110 (858)
T ss_dssp EEEEEEEEEECSSCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEEE
T ss_pred eeEEEEEEEcCCCCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEec
Confidence 356778888882 22232 4555445667888898887 99999999999753
No 33
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=51.94 E-value=84 Score=25.98 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=36.8
Q ss_pred eEEEEEEecCCCCeEEEEEecCCCCeE--EEcCCeeEE-CCCCeEEEEEEecC
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSPKKY--FVRPNTGVV-QPWDSCIIRVTLQA 76 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p~~y--~V~P~~G~i-~P~~s~~I~I~~~~ 76 (131)
.+-.-+++|.+...-.|++..+.|.-. .|.|..=.+ ..|++..++|++..
T Consensus 539 ~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 539 QYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 344457999999999999998887654 456777544 56787777777754
No 34
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=49.65 E-value=39 Score=22.18 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=28.0
Q ss_pred EEEEEecCCCCeEE---EEEecCC---CCeEEEcCCeeEECCCCeEEEEEEec
Q 032878 29 CDLKVINNTEHHVA---FKVKTTS---PKKYFVRPNTGVVQPWDSCIIRVTLQ 75 (131)
Q Consensus 29 ~~l~l~N~s~~~va---FKVktT~---p~~y~V~P~~G~i~P~~s~~I~I~~~ 75 (131)
..|+|.|.+.+.+. |+++-.. ...-+--|+.=+|+||++++ |+-.
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vt--Iws~ 69 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT--IWAA 69 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEE--EEET
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEE--EEeC
Confidence 35778887776654 5665431 22334457777899999864 5543
No 35
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=49.42 E-value=9.9 Score=25.20 Aligned_cols=61 Identities=7% Similarity=0.013 Sum_probs=36.2
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCCCe-----EEEEEecCC-----------------------CCeEEEcCCee
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHH-----VAFKVKTTS-----------------------PKKYFVRPNTG 60 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~-----vaFKVktT~-----------------------p~~y~V~P~~G 60 (131)
.+..+|.+|+.+.+.+ .-.++++|.+.-+ --|-+-... ++... ..+
T Consensus 12 ~m~F~p~~i~V~k~G~---~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~t~ 85 (129)
T 2ccw_A 12 AMQYNVKEIVVDKSCK---QFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIA---HTK 85 (129)
T ss_dssp TSCBSCSEEEECTTCS---EEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEE---ECC
T ss_pred CccEecceEEEecCCC---EEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccccccccccee---eee
Confidence 3556777777644333 4679999987532 223332221 11111 235
Q ss_pred EECCCCeEEEEEEec
Q 032878 61 VVQPWDSCIIRVTLQ 75 (131)
Q Consensus 61 ~i~P~~s~~I~I~~~ 75 (131)
+|.||++..|+++..
T Consensus 86 ~l~pGet~svtf~~~ 100 (129)
T 2ccw_A 86 VIGGGESDSVTFDVS 100 (129)
T ss_dssp CBCTTCEEEEEEEGG
T ss_pred EECCCCEEEEEEecc
Confidence 789999999999863
No 36
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=49.18 E-value=32 Score=22.24 Aligned_cols=51 Identities=6% Similarity=-0.086 Sum_probs=35.9
Q ss_pred CCceeEEEEEEecCCCCe--EEEEEecCCCCeEEEcCC----e-eEECCCCeEEEEEE
Q 032878 23 LEKQGFCDLKVINNTEHH--VAFKVKTTSPKKYFVRPN----T-GVVQPWDSCIIRVT 73 (131)
Q Consensus 23 ~~~~~~~~l~l~N~s~~~--vaFKVktT~p~~y~V~P~----~-G~i~P~~s~~I~I~ 73 (131)
.++..+....|+|.+..+ +.||+-==+.+-+.|.|. . =+|.++++..|.-.
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~v 93 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTAL 93 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEE
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEE
Confidence 356688999999998777 888887656677777764 2 24777776665543
No 37
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=46.74 E-value=46 Score=22.59 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=27.1
Q ss_pred EEEEEecCCCCeEE---EEEecCCCC--eEEEcCCeeEECCCCeEEE
Q 032878 29 CDLKVINNTEHHVA---FKVKTTSPK--KYFVRPNTGVVQPWDSCII 70 (131)
Q Consensus 29 ~~l~l~N~s~~~va---FKVktT~p~--~y~V~P~~G~i~P~~s~~I 70 (131)
..|+|.|++.+.+. |+++-...+ .-+.-|+.=+|+||++++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 46888898877764 566532222 2245566668999998665
No 38
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=43.83 E-value=1.6e+02 Score=25.39 Aligned_cols=61 Identities=7% Similarity=-0.009 Sum_probs=42.4
Q ss_pred eEEEecc--CCceeEEEEEEecCCC---CeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 16 ELKFIFE--LEKQGFCDLKVINNTE---HHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 16 ~l~F~~~--~~~~~~~~l~l~N~s~---~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
.|..... -++...+.++++|+-. ....|.|--..-.+=... ..|-|.||+++.+.+.+.|.
T Consensus 633 ~I~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~ 698 (731)
T 1ex0_A 633 IIKVRGTQVVGSDMTVTVQFTNPLKETLRNVWVHLDGPGVTRPMKK-MFREIRPNSTVQWEEVCRPW 698 (731)
T ss_dssp EEEEEECCBTTSCEEEEEEEECCSSSCEEEEEEEEEETTTEEEEEE-EEEEECTTCEEEEEEEECCS
T ss_pred EEEeCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCceeeE-ecCccCCCCEEEEEEEEEec
Confidence 4555443 3667899999999755 556777765443222222 25889999999999999986
No 39
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=43.39 E-value=71 Score=21.33 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=42.3
Q ss_pred eEEEEEEecCCCCe-EEEEEecCCCCeE--EEcCCee-EECCCC--eEEEEEEecCCCCCCCCCCCCCEEEEEEEEcCCC
Q 032878 27 GFCDLKVINNTEHH-VAFKVKTTSPKKY--FVRPNTG-VVQPWD--SCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (131)
Q Consensus 27 ~~~~l~l~N~s~~~-vaFKVktT~p~~y--~V~P~~G-~i~P~~--s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~~~~ 100 (131)
..-.++.+|.+..+ =-|.++.-.|.-| ...|..| .|+|+. .++-.+.+.... ..+.+=|+.|.|..-...
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~----~~~l~LR~klsY~~~g~~ 124 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTYNHKGSA 124 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTT----CCCCCEEEEEEEEETTEE
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCC----CCCEEEEEEEEEEECCeE
Confidence 44556788876543 3455555555554 4557666 588843 344334332211 123566777877754321
Q ss_pred ----CCCCCCCcchh
Q 032878 101 ----TDVDDLPPDTF 111 (131)
Q Consensus 101 ----~~~~~~~~~~f 111 (131)
.+..+++.++|
T Consensus 125 ~~E~~~v~~fP~~~~ 139 (140)
T 1gyu_A 125 MQDLAEVNNFPPQSW 139 (140)
T ss_dssp EEEEEEECCCCGGGT
T ss_pred EEEEEEECCCChhhc
Confidence 13344555444
No 40
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=43.16 E-value=63 Score=20.61 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=32.1
Q ss_pred eEEEEEEecCCCCeEE-EEEec-----------------CCCCeEEEcCC--eeEECC-CCeEEEEEEec
Q 032878 27 GFCDLKVINNTEHHVA-FKVKT-----------------TSPKKYFVRPN--TGVVQP-WDSCIIRVTLQ 75 (131)
Q Consensus 27 ~~~~l~l~N~s~~~va-FKVkt-----------------T~p~~y~V~P~--~G~i~P-~~s~~I~I~~~ 75 (131)
-...++|+|.+..+|- +.|.= .+-+.|.++|. .|-|+| |++..+-+.-.
T Consensus 17 f~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 17 ASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp EEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 4577888888765543 33321 12467888864 389999 99887766544
No 41
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=42.54 E-value=43 Score=22.58 Aligned_cols=42 Identities=7% Similarity=0.116 Sum_probs=27.2
Q ss_pred EEEEEecCCCCeEE---EEEecCCCC---eEEEcCCeeEECCCCeEEE
Q 032878 29 CDLKVINNTEHHVA---FKVKTTSPK---KYFVRPNTGVVQPWDSCII 70 (131)
Q Consensus 29 ~~l~l~N~s~~~va---FKVktT~p~---~y~V~P~~G~i~P~~s~~I 70 (131)
..|+|.|.+.+.+. |+++-...+ .-+.-|+.=+|+||++++|
T Consensus 34 efV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtI 81 (139)
T 2lll_A 34 KFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTV 81 (139)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 46788888876664 666643221 3333577778999998653
No 42
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=42.19 E-value=1.1e+02 Score=26.14 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=41.9
Q ss_pred eEEEecc--CCceeEEEEEEecCC---CCeEEEEEecCCC----CeEEEcCCeeEECCCCeEEEEEEecCC
Q 032878 16 ELKFIFE--LEKQGFCDLKVINNT---EHHVAFKVKTTSP----KKYFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 16 ~l~F~~~--~~~~~~~~l~l~N~s---~~~vaFKVktT~p----~~y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
.|..... -++...+.++++|+- -....|.|--..- ..+. .|-|.||+++.+.+.+.|.
T Consensus 597 ~I~v~g~~~v~~~l~v~v~f~NPL~~~L~~c~~~vEG~GL~~~~~~~~----~~~v~pg~~~~~~~~~~P~ 663 (692)
T 1vjj_A 597 TLEVLNEARVRKPVNVQMLFSNPLDEPVRDCVLMVEGSGLLLGNLKID----VPTLGPKERSRVRFDILPS 663 (692)
T ss_dssp EEEECSCCBTTSCEEEEEEEECCSSSCBCSEEEEEECTTTSSSCEEEE----ECCBCTTCEEEEEEEECCC
T ss_pred EEEeCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCCCceEEE----cCccCCCCEEEEEEEEEec
Confidence 4444433 256788999999964 3667888875443 2343 3779999999999999986
No 43
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=41.52 E-value=1.6e+02 Score=25.15 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=46.3
Q ss_pred eEEEecc--CCceeEEEEEEecCCC---CeEEEEEecCCCCe--EEEcCCe-eEECCCCeEEEEEEecCCCCCCCCCCCC
Q 032878 16 ELKFIFE--LEKQGFCDLKVINNTE---HHVAFKVKTTSPKK--YFVRPNT-GVVQPWDSCIIRVTLQAQRESPPDMQCK 87 (131)
Q Consensus 16 ~l~F~~~--~~~~~~~~l~l~N~s~---~~vaFKVktT~p~~--y~V~P~~-G~i~P~~s~~I~I~~~~~~~~~~~~~~~ 87 (131)
.|..... -++...+.++++|+-. ....|.|--..-.+ -.++ . |-|.||+++.+.+.+.|.. ...
T Consensus 590 ~I~v~g~~~v~~~~~v~v~f~NPL~~~L~~c~~~vEG~GL~~~~~~~~--~~~~v~pg~~~~~~~~~~P~~------~G~ 661 (687)
T 2q3z_A 590 KIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVE--IPDPVEAGEEVKVRMDLVPLH------MGL 661 (687)
T ss_dssp EEEEESCCSSSSCEEEEEEEECCSSSCBCSEEEEEECTTTCSSCEEEE--ECSCBCTTCEEEEEEEECCCS------SSC
T ss_pred EEEeCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCCCceEEe--cCCCcCCCCEEEEEEEEEecc------ccc
Confidence 4555544 3567889999999743 66788887544221 1222 3 5699999999999999862 245
Q ss_pred CEEEEE
Q 032878 88 DKFLLQ 93 (131)
Q Consensus 88 dkF~V~ 93 (131)
.++++.
T Consensus 662 ~~L~a~ 667 (687)
T 2q3z_A 662 HKLVVN 667 (687)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 565543
No 44
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=38.29 E-value=22 Score=23.43 Aligned_cols=64 Identities=8% Similarity=0.100 Sum_probs=35.5
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecCCCCe-----EEEEEecCC-------------CC-eE------EEcCCeeEEC
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINNTEHH-----VAFKVKTTS-------------PK-KY------FVRPNTGVVQ 63 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~s~~~-----vaFKVktT~-------------p~-~y------~V~P~~G~i~ 63 (131)
-+.++|.+|+.+.+.+ +-.|+++|.+.-+ --|-+-+.. ++ .| ++.-..++|.
T Consensus 12 ~m~F~p~~i~V~k~G~---~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 88 (128)
T 1nwp_A 12 QMSFNTKDIAIDKSCK---TFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIG 88 (128)
T ss_dssp TSCBSCSEEEECTTCS---EEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecCEEEEecCCC---EEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeC
Confidence 3566777777633332 4678999987532 223332210 00 01 0111234799
Q ss_pred CCCeEEEEEEec
Q 032878 64 PWDSCIIRVTLQ 75 (131)
Q Consensus 64 P~~s~~I~I~~~ 75 (131)
||++..|+++..
T Consensus 89 pGet~svtf~~~ 100 (128)
T 1nwp_A 89 AGEKDSVTFDVS 100 (128)
T ss_dssp TTCEEEEEEEGG
T ss_pred CCCEEEEEEecc
Confidence 999999999863
No 45
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=38.10 E-value=86 Score=21.39 Aligned_cols=45 Identities=7% Similarity=0.124 Sum_probs=28.2
Q ss_pred EEEEEecCCCCeEE---EEEecC--C-CCeEEEcCCeeEECCCCeEEEEEEec
Q 032878 29 CDLKVINNTEHHVA---FKVKTT--S-PKKYFVRPNTGVVQPWDSCIIRVTLQ 75 (131)
Q Consensus 29 ~~l~l~N~s~~~va---FKVktT--~-p~~y~V~P~~G~i~P~~s~~I~I~~~ 75 (131)
..|+|.|.+...+. |+++=. . ...-+.-|..=+|+||++++ |+-.
T Consensus 50 efV~L~N~s~~~~~L~GW~L~r~vdg~~~~~y~Fp~~~~L~pg~tVt--Iws~ 100 (151)
T 1ufg_A 50 KFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVT--IWAS 100 (151)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCCEEEECCTTCEECTTCEEE--EEES
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEE--EEeC
Confidence 36788888776664 666532 1 22344467777899999865 4443
No 46
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=37.57 E-value=41 Score=19.46 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=15.2
Q ss_pred EEEEecCCCCeEEEEEecCCC
Q 032878 30 DLKVINNTEHHVAFKVKTTSP 50 (131)
Q Consensus 30 ~l~l~N~s~~~vaFKVktT~p 50 (131)
.|+++..+.+.+.|+|+.+.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 467777777788888886653
No 47
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=37.41 E-value=73 Score=20.89 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=18.9
Q ss_pred CceeEEEEEEecCCCCeEEEEEecC
Q 032878 24 EKQGFCDLKVINNTEHHVAFKVKTT 48 (131)
Q Consensus 24 ~~~~~~~l~l~N~s~~~vaFKVktT 48 (131)
+......|+|+|.++.++-+...+.
T Consensus 17 g~~v~~~ltv~N~s~~~v~l~f~Sg 41 (120)
T 3isy_A 17 PEQIKFNMSLKNQSERAIEFQFSTG 41 (120)
T ss_dssp SSCEEEEEEEEECSSSCEEEEESSS
T ss_pred CCeEEEEEEEEcCCCCcEEEEeCCC
Confidence 3467788999998888887776654
No 48
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=36.07 E-value=1.5e+02 Score=22.83 Aligned_cols=68 Identities=9% Similarity=0.230 Sum_probs=40.2
Q ss_pred CceeEEEEEEecCCCCeEEE----EEecCCCCeEEEc-----------------C---CeeEECCCCeEEEEEEecCCCC
Q 032878 24 EKQGFCDLKVINNTEHHVAF----KVKTTSPKKYFVR-----------------P---NTGVVQPWDSCIIRVTLQAQRE 79 (131)
Q Consensus 24 ~~~~~~~l~l~N~s~~~vaF----KVktT~p~~y~V~-----------------P---~~G~i~P~~s~~I~I~~~~~~~ 79 (131)
.....-.++|+|++++++-+ -......+.|.|. | ..=.|+||+++++++-+...-+
T Consensus 35 ~~~~~vk~tvtN~g~~~~~lLk~~~lD~~~~~~~~V~~~G~~v~f~Gi~~~~~~~~~d~f~~L~pG~Sve~~~dla~~yd 114 (343)
T 2x3c_A 35 TDDVRVNLTLTNTGDKPIRLLKWQLPGSDDAPLFLVERDGQPVSYEGALIKRAAPTDKDFQLLKAGQSLTVQAEVSGLYD 114 (343)
T ss_dssp SSCCEEEEEEEECSSSCEEEEGGGSCSSSCCCCEEEEETTEECCBCSCCCCCCCCCGGGEEEECTTCEEEEEEECTTTBT
T ss_pred CCCeEEEEEEEeCCCCceEeeccCCCCcCccceEEEEeCCcccceeeEEEeccCCChhhcEEeCCCCeEEEEEehhhccc
Confidence 44567788899999888644 0011112334432 1 1236899999999999865322
Q ss_pred CCCCCCCCCEEEEEEE
Q 032878 80 SPPDMQCKDKFLLQST 95 (131)
Q Consensus 80 ~~~~~~~~dkF~V~~~ 95 (131)
+....++.|++-
T Consensus 115 ----Ls~gG~y~v~~~ 126 (343)
T 2x3c_A 115 ----MSAQGQYSIRYQ 126 (343)
T ss_dssp ----CCSCEEEEEEEC
T ss_pred ----cCCCceEEEEEe
Confidence 224566666653
No 49
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=35.05 E-value=1e+02 Score=20.67 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=36.5
Q ss_pred eEEEEEEecCCCCe-EEEEEecCCCCe--EEEcCCee-EECCCC--eEEEEEEecCCCCCCCCCCCCCEEEEEEEEc
Q 032878 27 GFCDLKVINNTEHH-VAFKVKTTSPKK--YFVRPNTG-VVQPWD--SCIIRVTLQAQRESPPDMQCKDKFLLQSTIV 97 (131)
Q Consensus 27 ~~~~l~l~N~s~~~-vaFKVktT~p~~--y~V~P~~G-~i~P~~--s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~ 97 (131)
..-.++.+|.+..+ =-|.++.-.|.. -...|..| .|+|+. .++-.+.+.... ..+.+=|+.|.|..-
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~----~~~lklR~klsY~~~ 127 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTYNHK 127 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTT----CCCCCCEEEEEEEET
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCC----CCCEEEEEEEEEEEC
Confidence 44556788876543 345555545554 45557666 588844 343333332211 123567888887754
No 50
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=34.91 E-value=21 Score=23.55 Aligned_cols=17 Identities=6% Similarity=0.178 Sum_probs=14.1
Q ss_pred eeEECCCCeEEEEEEec
Q 032878 59 TGVVQPWDSCIIRVTLQ 75 (131)
Q Consensus 59 ~G~i~P~~s~~I~I~~~ 75 (131)
..+|.||++..|+++..
T Consensus 84 t~~l~pGet~svtf~~~ 100 (129)
T 1cuo_A 84 TPIIGGGEKTSVKFKVS 100 (129)
T ss_dssp CCCBCTTCEEEEEEEGG
T ss_pred eeEECCCCEEEEEEecc
Confidence 35799999999999863
No 51
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=33.66 E-value=1.2e+02 Score=25.30 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=37.9
Q ss_pred eEEEEEEecCCCCeEEEEEecCCCCeEEE--cCCeeEE-CCCCeEEEEEEecCC
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFV--RPNTGVV-QPWDSCIIRVTLQAQ 77 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p~~y~V--~P~~G~i-~P~~s~~I~I~~~~~ 77 (131)
.+..-++||.+...-.|+++...|....| .|..=.. ..+++...+|++.+.
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~ 613 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI 613 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec
Confidence 45667899999888899999988877654 5888655 578888888888654
No 52
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=32.43 E-value=46 Score=21.35 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=36.8
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEEE-------------EEecCCCCeEEEcCCee---EECCCCeEEEEEEec
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAF-------------KVKTTSPKKYFVRPNTG---VVQPWDSCIIRVTLQ 75 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaF-------------KVktT~p~~y~V~P~~G---~i~P~~s~~I~I~~~ 75 (131)
+.+.+++++. + ..+..|+++|++++||-- ...=..-.-|+..=+.| -.+||++.+|.+.--
T Consensus 8 ~~~g~I~lN~--g-r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~r~V~LV~~ 84 (101)
T 4ep8_B 8 VKPGQIALNT--G-RATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAF 84 (101)
T ss_dssp CCCSEEECST--T-CCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCTTTTTTEEECSSTTCEEEECTTCEEEEEEEEC
T ss_pred cCCCcEEEcC--C-CCEEEEEEEeCCCcceEEccccChhHcCcceeecHhhccCceecccCCCeEeeCCCCeEEEEEEEc
Confidence 3444555442 2 347889999999999842 11111112255553333 468888888887755
Q ss_pred CC
Q 032878 76 AQ 77 (131)
Q Consensus 76 ~~ 77 (131)
++
T Consensus 85 ~G 86 (101)
T 4ep8_B 85 AG 86 (101)
T ss_dssp CT
T ss_pred cC
Confidence 44
No 53
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=32.12 E-value=57 Score=20.04 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=17.8
Q ss_pred EEEEEEecCCCCeEEEEEecCCC
Q 032878 28 FCDLKVINNTEHHVAFKVKTTSP 50 (131)
Q Consensus 28 ~~~l~l~N~s~~~vaFKVktT~p 50 (131)
.-.|+++..+.+.+.|||+.+.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCh
Confidence 35677888777899999987765
No 54
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.76 E-value=56 Score=21.48 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=35.8
Q ss_pred eEEEEEEecCCCCeE-EEEEecCCCC--eEEEcCCee-EECCCCe--EEEEEEecCCCCCCCCCCCCCEEEEEEEEc
Q 032878 27 GFCDLKVINNTEHHV-AFKVKTTSPK--KYFVRPNTG-VVQPWDS--CIIRVTLQAQRESPPDMQCKDKFLLQSTIV 97 (131)
Q Consensus 27 ~~~~l~l~N~s~~~v-aFKVktT~p~--~y~V~P~~G-~i~P~~s--~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~ 97 (131)
..-.++.+|.+..+| -|.++.-.|. .-...|..| .|.|+.. ++-.+.+... .....+=|+.|.|..-
T Consensus 40 ~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~n~----~~~~l~lR~klsY~~~ 112 (131)
T 2e9g_A 40 LLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPITQLFRILNP----NKAPLRLKLRLTYDHF 112 (131)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTCCCBCCCEEEECT----TCCCCCEEEEEEEECS
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCCCCEEEEEEEeCC----CCCCEEEEEEEEEEEC
Confidence 445667889776433 3555544444 455557666 6888554 2222222221 1123566777777743
No 55
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=28.52 E-value=70 Score=21.43 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=38.7
Q ss_pred CCCCCCCccEEEcCCeEEEeccCCc---eeEEEEEEecCCCCeEE-----EEEecCCCCeEEEc-----CCeeEECCCCe
Q 032878 1 MTADGGNQLISVHPEELKFIFELEK---QGFCDLKVINNTEHHVA-----FKVKTTSPKKYFVR-----PNTGVVQPWDS 67 (131)
Q Consensus 1 ~~~~~~~~~l~v~P~~l~F~~~~~~---~~~~~l~l~N~s~~~va-----FKVktT~p~~y~V~-----P~~G~i~P~~s 67 (131)
|++....--+.+.|..|.-...... .-...|+|.|.++.++- |.|.-.+...=.|+ =..=+|.||++
T Consensus 1 m~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe~ 80 (134)
T 1tza_A 1 MSALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTA 80 (134)
T ss_dssp --CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEE
T ss_pred CCCccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCCc
Confidence 5544455567777776655543322 24567999999987764 44544332332332 22337888885
Q ss_pred EE
Q 032878 68 CI 69 (131)
Q Consensus 68 ~~ 69 (131)
..
T Consensus 81 F~ 82 (134)
T 1tza_A 81 YQ 82 (134)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 56
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=26.71 E-value=1.5e+02 Score=25.81 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=34.0
Q ss_pred eeEEEEEEecCCCC--eEEEEEecC----CCCeEEEcC--------CeeEECCCCeEEEEEEecC
Q 032878 26 QGFCDLKVINNTEH--HVAFKVKTT----SPKKYFVRP--------NTGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 26 ~~~~~l~l~N~s~~--~vaFKVktT----~p~~y~V~P--------~~G~i~P~~s~~I~I~~~~ 76 (131)
..+..++++|.++. ...|++... ....+.|.| ..=.|+||++.+++|++.+
T Consensus 500 ~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~ 564 (926)
T 1xf1_A 500 KFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDA 564 (926)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEEC
T ss_pred cEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEc
Confidence 45567899999874 455655422 134455544 3446788999999999875
No 57
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=26.57 E-value=1e+02 Score=19.82 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=42.3
Q ss_pred CceeEEEEEEecCCC-CeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCCCCCCCCCEEEEEEEEcCCC
Q 032878 24 EKQGFCDLKVINNTE-HHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSN 100 (131)
Q Consensus 24 ~~~~~~~l~l~N~s~-~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~~~~ 100 (131)
+....-.++|+|.+. ..-+|.|+-...+...-.-..+-|.+|++..|.++..+.. ....+.|...+-+++
T Consensus 18 ~~~~ti~atVkN~G~~~a~~~~V~ly~~g~~v~t~~v~~LaaG~s~tv~~~w~~~~-------~~G~ytl~a~VD~~n 88 (114)
T 2l0d_A 18 NTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESENSTNVDFHWTLDG-------TANSYTLTVNVDPEN 88 (114)
T ss_dssp TSEEEEEEEEEECSSSCBCCEEEEEEETTEEEEEEEESCBCBTCEEEEEEEEECCC-------SCSEEEEEEEECTTC
T ss_pred CCeEEEEEEEEECCCCCCCCEEEEEEECCEEEcceecccccCCCEEEEEEEEeecC-------cCceEEEEEEECCCC
Confidence 556778889999875 3344555533333322222344599999999999866531 135566666655544
No 58
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=25.32 E-value=88 Score=19.10 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=16.9
Q ss_pred EEEEEEecCCCCeEEEEEecCCC
Q 032878 28 FCDLKVINNTEHHVAFKVKTTSP 50 (131)
Q Consensus 28 ~~~l~l~N~s~~~vaFKVktT~p 50 (131)
.-.|++.....+.+.|||+.+.+
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEEccCCH
Confidence 45677777777788888887654
No 59
>4h4n_A Hypothetical protein BA_2335; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.10A {Bacillus anthracis}
Probab=25.19 E-value=1e+02 Score=17.67 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=20.5
Q ss_pred cEEEcCC---eEEEeccCCceeEEEEEEecCC
Q 032878 9 LISVHPE---ELKFIFELEKQGFCDLKVINNT 37 (131)
Q Consensus 9 ~l~v~P~---~l~F~~~~~~~~~~~l~l~N~s 37 (131)
...+.|+ .++|-+|++. ....+.|.|--
T Consensus 10 ~fkvppnsklkvtffgp~ne-vitnvsiinql 40 (67)
T 4h4n_A 10 AFKVPPNSKLKVTFFGPYNE-VITNVSIINQL 40 (67)
T ss_dssp EEEECTTEEEEEEEECTTSC-EEEEEEEEECS
T ss_pred EEEcCCCCeeEEEEecchhh-hhhhHHHHHhh
Confidence 4677786 5889999875 56677888843
No 60
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=24.79 E-value=1.1e+02 Score=18.71 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=17.1
Q ss_pred EEEEEEecCCCCeEEEEEecCCC
Q 032878 28 FCDLKVINNTEHHVAFKVKTTSP 50 (131)
Q Consensus 28 ~~~l~l~N~s~~~vaFKVktT~p 50 (131)
.-.|+++..+.+.+.|||+.+.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 45677777777788899887654
No 61
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=24.46 E-value=94 Score=25.69 Aligned_cols=27 Identities=30% Similarity=0.196 Sum_probs=17.2
Q ss_pred cEEEcCCeEEEeccCCceeEEEEEEecC
Q 032878 9 LISVHPEELKFIFELEKQGFCDLKVINN 36 (131)
Q Consensus 9 ~l~v~P~~l~F~~~~~~~~~~~l~l~N~ 36 (131)
-+.|+|..|.|.... +.....++++..
T Consensus 566 ~v~V~P~~l~f~~~~-~~~~~~vt~~~~ 592 (621)
T 3vta_A 566 TISVNPNVLSFNGLG-DRKSFTLTVRGS 592 (621)
T ss_dssp EEEEESSEEEECSTT-CEEEEEEEEEEC
T ss_pred EEEEecCEEEEcCCC-cEEEEEEEEEec
Confidence 467888888887543 334555666543
No 62
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=23.57 E-value=37 Score=23.56 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=13.4
Q ss_pred eeEECCCCeEEEEEEe
Q 032878 59 TGVVQPWDSCIIRVTL 74 (131)
Q Consensus 59 ~G~i~P~~s~~I~I~~ 74 (131)
.++|.||++..|+++.
T Consensus 123 t~~l~pGet~svtf~~ 138 (167)
T 3ay2_A 123 TKLIGGGEESSLTLDP 138 (167)
T ss_dssp CCCBCTTCEEEEEECG
T ss_pred ceeeCCCCEEEEEEec
Confidence 4579999999999974
No 63
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=23.26 E-value=1.9e+02 Score=20.01 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=38.8
Q ss_pred eeEEEEEEecCCC-----CeEEEEEecCCCCe-EEEcCCeeEECCCCeEEEEEEecC
Q 032878 26 QGFCDLKVINNTE-----HHVAFKVKTTSPKK-YFVRPNTGVVQPWDSCIIRVTLQA 76 (131)
Q Consensus 26 ~~~~~l~l~N~s~-----~~vaFKVktT~p~~-y~V~P~~G~i~P~~s~~I~I~~~~ 76 (131)
.....|+|+|+.+ .-++|.++...... =-+.|..|.|+++++..+.|-..-
T Consensus 63 ~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v 119 (174)
T 1yyc_A 63 DYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKV 119 (174)
T ss_dssp EEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEE
Confidence 4567899999765 45799999876433 356789999999999887776543
No 64
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=22.64 E-value=2e+02 Score=19.96 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=45.1
Q ss_pred CceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCe---------------eEECCCCeEEEEEEecCCCCCC--CCCCC
Q 032878 24 EKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNT---------------GVVQPWDSCIIRVTLQAQRESP--PDMQC 86 (131)
Q Consensus 24 ~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~---------------G~i~P~~s~~I~I~~~~~~~~~--~~~~~ 86 (131)
+......-+.+|.+++++. ..-.|.|.|.. =.|.||++++.-|.+-=..+.+ ++++.
T Consensus 61 GE~~~~~y~a~N~sd~~i~------G~A~ynV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~MPV~F~IDP~i~~D~~~~~ 134 (164)
T 1so9_A 61 GETVQIMYRAKNLASTPTT------GQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQG 134 (164)
T ss_dssp TCCCCEEEEEEECSSSCEE------CCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCGGGGSSTTTTT
T ss_pred CCeEEEEEEEECCCCCcEE------EEECceeCHHHHhhhccceeeEcccCcccCCCCeEeeeEEEEECCCcCCCcccCC
Confidence 3445566778888888764 44556666643 3799999999888764332332 34455
Q ss_pred CCEEEEEEEEcCC
Q 032878 87 KDKFLLQSTIVPS 99 (131)
Q Consensus 87 ~dkF~V~~~~~~~ 99 (131)
-+.+.+.|..-+.
T Consensus 135 v~tITLSYTFf~~ 147 (164)
T 1so9_A 135 IKTLTLSYTFYPR 147 (164)
T ss_dssp CCBCCEEEEECSC
T ss_pred CCEEEEEEEEEec
Confidence 6677777776653
No 65
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=22.39 E-value=1.3e+02 Score=17.96 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=30.0
Q ss_pred EcCCeEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEcCCeeEECCCCeEEEEEEe
Q 032878 12 VHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTL 74 (131)
Q Consensus 12 v~P~~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~P~~G~i~P~~s~~I~I~~ 74 (131)
.+|++|..+ .+. +-.+.++|.+..+-.|-+.... ..+.+.||++..+.++.
T Consensus 25 F~P~~i~v~--~G~--tV~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 25 FNPNVITIP--INE--STTLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVKP 75 (100)
T ss_dssp EESSEEEEC--TTS--CEEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEECC
T ss_pred EeCCEEEEC--CCC--EEEEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEec
Confidence 345555543 232 3556778877655555553321 23578899988887763
No 66
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=22.09 E-value=1.1e+02 Score=19.94 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=17.5
Q ss_pred eEEEEEEecCCCCeEEEEEecCCC
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSP 50 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p 50 (131)
..-.|++.......|.|||+.+.+
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~ 62 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTH 62 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEEcCCCCEEEEEEccCCh
Confidence 355677777777778899987754
No 67
>1t0p_B ICAM-3, intercellular adhesion molecule-3, ICAM-R, CDW50, CD50 antigen; rossmann fold, IG-super family domain, immune system; HET: NAG; 1.66A {Homo sapiens}
Probab=21.85 E-value=71 Score=19.78 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.0
Q ss_pred EEEcCCeeEECCCCeEEEEEEecCC
Q 032878 53 YFVRPNTGVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 53 y~V~P~~G~i~P~~s~~I~I~~~~~ 77 (131)
-+|.|..-++++|++..|.=+....
T Consensus 5 v~v~P~~~~V~~G~S~~vNCStsC~ 29 (86)
T 1t0p_B 5 LRVEPQNPVLSAGGSLFVNCSTDCP 29 (86)
T ss_dssp EEEESCSCEECSSCEEEEEEEECCT
T ss_pred EEecCCcceEcCCCcEEEEEeCCCC
Confidence 3678999999999999999887653
No 68
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=21.75 E-value=77 Score=21.35 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=26.3
Q ss_pred cCCCCeEEEcCCeeEECCCCeEEEEEEecCCCCCC
Q 032878 47 TTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESP 81 (131)
Q Consensus 47 tT~p~~y~V~P~~G~i~P~~s~~I~I~~~~~~~~~ 81 (131)
+-+|+.=.+.=..-+|.||++..|++..+.....|
T Consensus 45 ~pSpDLtvisiDk~vL~PGESA~it~IvKDid~nP 79 (146)
T 2lv4_A 45 TPSPDLTVMSIDKSVLSPGESATITTIVKDIDGNP 79 (146)
T ss_dssp CBCGGGCEEECCCCCBCTTCEEEEEEECBBTTSCB
T ss_pred CCCCCcEEEecCccccCCCcceEEEEEEEeCCCCc
Confidence 33566667777778899999999999987754333
No 69
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=21.17 E-value=66 Score=21.62 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=29.3
Q ss_pred ecCCCCeEEEcC--CeeEECCCCeEEEEEEecCCCCCCCCCCCCCEEEEEEEEcC
Q 032878 46 KTTSPKKYFVRP--NTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVP 98 (131)
Q Consensus 46 ktT~p~~y~V~P--~~G~i~P~~s~~I~I~~~~~~~~~~~~~~~dkF~V~~~~~~ 98 (131)
+.+.+.-|.+.. +..-..||+.+.|+|.-... . .=--|+||.-...
T Consensus 17 ~~~~~~py~i~i~~~~~~y~pG~~~~VtL~~~~~----~---~F~GFllqAr~~~ 64 (149)
T 2zou_A 17 RREGYTEFSLRVEGDPDFYKPGTSYRVTLSAAPP----S---YFRGFTLIALREN 64 (149)
T ss_dssp -CCSCCSEEEEETTCCSSBCTTCEEEEEEEECTT----C---CBSEEEEEEEETT
T ss_pred CCCCCCCEEEEEecCCceEcCCCcEEEEEeccCC----C---ceEEEEEEEEecC
Confidence 445566777777 66678999999988873221 1 1236777776654
No 70
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=20.95 E-value=77 Score=21.13 Aligned_cols=52 Identities=10% Similarity=0.124 Sum_probs=32.0
Q ss_pred eeEEEEEEecCCCCeEEE----EEecCCCC---------eEEEcCCee---EECCCCeEEEEEEecCC
Q 032878 26 QGFCDLKVINNTEHHVAF----KVKTTSPK---------KYFVRPNTG---VVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 26 ~~~~~l~l~N~s~~~vaF----KVktT~p~---------~y~V~P~~G---~i~P~~s~~I~I~~~~~ 77 (131)
..+..|+++|++++||-- -.==+|+. -|+..=+.| -.+||++.+|.+.-.++
T Consensus 25 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~~G 92 (126)
T 4ubp_B 25 REKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTELGG 92 (126)
T ss_dssp SCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEEECCT
T ss_pred CcEEEEEEEeCCCCCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEEEccC
Confidence 356889999999999842 11112222 245443333 46888888888775554
No 71
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=20.95 E-value=77 Score=21.13 Aligned_cols=52 Identities=10% Similarity=0.124 Sum_probs=32.0
Q ss_pred eeEEEEEEecCCCCeEEE----EEecCCCC---------eEEEcCCee---EECCCCeEEEEEEecCC
Q 032878 26 QGFCDLKVINNTEHHVAF----KVKTTSPK---------KYFVRPNTG---VVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 26 ~~~~~l~l~N~s~~~vaF----KVktT~p~---------~y~V~P~~G---~i~P~~s~~I~I~~~~~ 77 (131)
..+..|+++|++++||-- -.==+|+. -|+..=+.| -.+||++.+|.+.-.++
T Consensus 25 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~~G 92 (126)
T 4ac7_B 25 REKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTELGG 92 (126)
T ss_dssp SCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEEECCT
T ss_pred CcEEEEEEEeCCCCCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEEEccC
Confidence 356889999999999842 11112222 245443333 46888888888775554
No 72
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=20.79 E-value=2.5e+02 Score=20.54 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=33.6
Q ss_pred CceeEEEEEEecCCCCeE-EEEEecCCCCeEEEcCC----e-eEECCCCeEEEEEEecCC
Q 032878 24 EKQGFCDLKVINNTEHHV-AFKVKTTSPKKYFVRPN----T-GVVQPWDSCIIRVTLQAQ 77 (131)
Q Consensus 24 ~~~~~~~l~l~N~s~~~v-aFKVktT~p~~y~V~P~----~-G~i~P~~s~~I~I~~~~~ 77 (131)
++...-.|+++|.+..++ -|.|+-+ .+.|-..|. . .-|+||++.++.|-+...
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~~~ 112 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTL 112 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEESC
T ss_pred CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeeecC
Confidence 345667899999887653 2444443 233333332 1 349999999999987653
No 73
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=20.63 E-value=1.4e+02 Score=21.60 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=36.8
Q ss_pred CccEEEcCC--eEEEeccCCceeEEEEEEecCCCCeEEEEEecCCCCeEEEc
Q 032878 7 NQLISVHPE--ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVR 56 (131)
Q Consensus 7 ~~~l~v~P~--~l~F~~~~~~~~~~~l~l~N~s~~~vaFKVktT~p~~y~V~ 56 (131)
.-.+.++|+ .+.|.... ....+.+.+.+.++.-+.|.++.+....|..+
T Consensus 164 ~v~i~~~~~~p~~~~~~~G-d~g~~~i~~~~~~~~~~~~~~~~~~~~~y~l~ 214 (263)
T 3a1j_C 164 VLQITMSPDKPYFRLSTFG-NAGSSHLDYPKDSDLMEAFHCNQTQVNRYKIS 214 (263)
T ss_dssp EEEEEECSSSSSEEEEEEE-TTEEEEEEECTTCSSEEEEEECSCEEEEEEHH
T ss_pred eEEEEEEcCCCEEEEEEEc-CCccEEEEEcCCCCeEEEEEeCChhhcEEeHH
Confidence 345677887 89999774 34578999999888888888876656777765
No 74
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.04 E-value=1.1e+02 Score=19.16 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=17.9
Q ss_pred eEEEEEEecCCCCeEEEEEecCCC
Q 032878 27 GFCDLKVINNTEHHVAFKVKTTSP 50 (131)
Q Consensus 27 ~~~~l~l~N~s~~~vaFKVktT~p 50 (131)
..-.|++.......+.|||+.+.+
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~ 46 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTP 46 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSC
T ss_pred CeEEEEEECCCCCEEEEEEcCCCh
Confidence 346677877777889999987654
Done!