BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032882
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
          Length = 248

 Score = 29.3 bits (64), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 64  NSIICPDCDGNG-----AKQCSQCKGNGINSVDHFNGQF--KAGGLCWLCRGKREIL--- 113
             I+C +C+G G      K+C+ C G GI  V    G    +    C +C G  +I+   
Sbjct: 37  KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK 96

Query: 114 --CGNCNG 119
             C +CNG
Sbjct: 97  DRCKSCNG 104


>pdb|4GQT|A Chain A, N-Terminal Domain Of C. Elegans Hsp90
 pdb|4GQT|B Chain B, N-Terminal Domain Of C. Elegans Hsp90
          Length = 227

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 15 SSNRPGIAIESSVARKVSRVNEVFHSSKTVKIRSLKVKATDS 56
          S N    A ++ +A+ +S +   F+S+K + +R L   A+D+
Sbjct: 5  SENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDA 46


>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
          Length = 972

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/10 (90%), Positives = 9/10 (90%)

Query: 68  CPDCDGNGAK 77
           CPDCDG GAK
Sbjct: 294 CPDCDGLGAK 303


>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
 pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
          Length = 972

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/10 (90%), Positives = 9/10 (90%)

Query: 68  CPDCDGNGAK 77
           CPDCDG GAK
Sbjct: 294 CPDCDGLGAK 303


>pdb|1ZBD|B Chain B, Structural Basis Of Rab Effector Specificity: Crystal
           Structure Of The Small G Protein Rab3a Complexed With
           The Effector Domain Of Rabphilin-3a
          Length = 134

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 65  SIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMG 124
           S++C DC  N    C++C       V+  N +     LC +C  +RE+     +GA F  
Sbjct: 72  SVVCEDCKKNV---CTKC------GVETSNNRPHPVWLCKICLEQREVW--KRSGAWFFK 120

Query: 125 GF 126
           GF
Sbjct: 121 GF 122


>pdb|3I2T|A Chain A, Crystal Structure Of The Unliganded Drosophila Epidermal
           Growth Factor Receptor Ectodomain
          Length = 551

 Score = 25.4 bits (54), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 16/72 (22%)

Query: 62  KTNSIICPD------CDGNGAKQCSQCK-----GNGINSVDHFNGQFKAGG-LCWLCRGK 109
           + N  IC D      C G G  QC  CK     G  I    + +  +K     C +C  +
Sbjct: 474 EKNGTICSDQCNEDGCWGAGTDQCLNCKNFNFNGTCIADCGYISNAYKFDNRTCKICHPE 533

Query: 110 REILCGNCNGAG 121
               C  CNGAG
Sbjct: 534 ----CRTCNGAG 541


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,703,364
Number of Sequences: 62578
Number of extensions: 140715
Number of successful extensions: 288
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 19
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)