Query 032882
Match_columns 131
No_of_seqs 242 out of 1103
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.6 1.8E-15 3.9E-20 129.2 6.4 76 49-124 122-210 (371)
2 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.4 1.7E-12 3.8E-17 85.8 6.2 54 68-121 1-66 (66)
3 PRK14282 chaperone protein Dna 99.3 3.1E-12 6.8E-17 108.2 7.3 79 48-126 131-224 (369)
4 PRK14278 chaperone protein Dna 99.3 3.9E-12 8.5E-17 108.1 7.4 77 49-125 119-210 (378)
5 PRK14298 chaperone protein Dna 99.3 3.6E-12 7.7E-17 108.4 7.0 78 48-125 120-212 (377)
6 PRK14296 chaperone protein Dna 99.3 4.4E-12 9.5E-17 107.7 6.9 77 49-125 129-220 (372)
7 PRK14279 chaperone protein Dna 99.3 4.3E-12 9.3E-17 108.4 6.6 75 49-125 153-240 (392)
8 PLN03165 chaperone protein dna 99.3 9.9E-12 2.1E-16 90.9 7.3 67 63-130 39-105 (111)
9 PRK14276 chaperone protein Dna 99.3 5.8E-12 1.3E-16 107.1 6.8 78 49-126 126-218 (380)
10 PRK14280 chaperone protein Dna 99.3 8.2E-12 1.8E-16 106.0 7.1 78 48-125 122-214 (376)
11 PRK14286 chaperone protein Dna 99.3 6.8E-12 1.5E-16 106.5 6.6 75 49-125 130-217 (372)
12 PRK14277 chaperone protein Dna 99.3 8.4E-12 1.8E-16 106.3 6.9 77 49-125 135-226 (386)
13 PRK14281 chaperone protein Dna 99.3 1E-11 2.2E-16 106.2 7.0 77 49-125 143-233 (397)
14 TIGR02349 DnaJ_bact chaperone 99.2 1.2E-11 2.6E-16 103.7 6.7 78 49-126 123-215 (354)
15 PRK14284 chaperone protein Dna 99.2 9.3E-12 2E-16 106.2 6.1 75 49-125 138-225 (391)
16 PRK14285 chaperone protein Dna 99.2 1.1E-11 2.4E-16 105.0 6.1 75 49-125 126-213 (365)
17 PRK14300 chaperone protein Dna 99.2 1.6E-11 3.6E-16 104.1 6.9 76 49-126 125-213 (372)
18 PRK14288 chaperone protein Dna 99.2 1.3E-11 2.8E-16 104.6 6.2 75 49-125 120-206 (369)
19 PRK14301 chaperone protein Dna 99.2 1.4E-11 3E-16 104.6 5.9 75 49-125 124-211 (373)
20 PRK14297 chaperone protein Dna 99.2 2E-11 4.4E-16 103.6 7.0 77 49-125 128-219 (380)
21 PRK14287 chaperone protein Dna 99.2 2E-11 4.3E-16 103.6 6.7 78 48-125 117-209 (371)
22 PRK14295 chaperone protein Dna 99.2 2E-11 4.2E-16 104.3 6.6 75 49-125 146-233 (389)
23 PRK10767 chaperone protein Dna 99.2 2.2E-11 4.9E-16 102.9 6.6 76 49-126 122-210 (371)
24 PRK14289 chaperone protein Dna 99.2 3E-11 6.6E-16 102.7 7.3 79 49-127 134-227 (386)
25 PRK14294 chaperone protein Dna 99.2 3.1E-11 6.8E-16 102.1 6.9 75 49-125 124-211 (366)
26 PTZ00037 DnaJ_C chaperone prot 99.2 3.6E-11 7.8E-16 104.0 6.9 78 49-126 130-223 (421)
27 PRK14290 chaperone protein Dna 99.2 7.5E-11 1.6E-15 99.7 8.3 79 48-126 128-220 (365)
28 PRK14291 chaperone protein Dna 99.2 5.4E-11 1.2E-15 101.2 6.5 75 49-125 136-222 (382)
29 PRK14293 chaperone protein Dna 99.2 5.7E-11 1.2E-15 100.7 6.6 77 49-125 123-214 (374)
30 PRK14283 chaperone protein Dna 99.2 6.3E-11 1.4E-15 100.6 6.5 77 49-125 126-217 (378)
31 PRK14292 chaperone protein Dna 99.1 2E-10 4.4E-15 97.1 6.8 77 49-125 119-211 (371)
32 KOG0712 Molecular chaperone (D 98.8 5.7E-09 1.2E-13 88.6 4.1 74 49-124 107-199 (337)
33 KOG2813 Predicted molecular ch 98.0 3.4E-06 7.4E-11 72.0 1.9 24 64-87 186-209 (406)
34 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.8 1.4E-05 2.9E-10 52.7 2.6 39 63-110 13-66 (66)
35 COG1107 Archaea-specific RecJ- 97.7 3.3E-05 7.1E-10 70.3 3.2 59 66-124 3-81 (715)
36 KOG2813 Predicted molecular ch 97.6 4.8E-05 1E-09 65.2 3.1 62 63-126 196-271 (406)
37 COG0484 DnaJ DnaJ-class molecu 97.4 9.6E-05 2.1E-09 63.8 2.4 40 64-113 158-210 (371)
38 COG1107 Archaea-specific RecJ- 96.8 0.0016 3.4E-08 59.6 4.8 27 64-90 52-82 (715)
39 KOG0715 Molecular chaperone (D 96.7 0.00055 1.2E-08 56.9 0.9 74 49-124 144-230 (288)
40 PRK14300 chaperone protein Dna 96.6 0.0013 2.7E-08 56.1 2.5 38 65-112 162-210 (372)
41 PRK14279 chaperone protein Dna 96.6 0.0013 2.9E-08 56.5 2.5 11 78-88 175-185 (392)
42 PRK14278 chaperone protein Dna 96.5 0.0018 3.9E-08 55.4 2.8 39 64-112 155-208 (378)
43 PRK14298 chaperone protein Dna 96.5 0.0016 3.5E-08 55.7 2.3 38 65-112 158-210 (377)
44 PRK14296 chaperone protein Dna 96.5 0.0021 4.6E-08 54.9 3.0 39 64-112 165-218 (372)
45 PRK14285 chaperone protein Dna 96.5 0.0018 4E-08 55.1 2.4 38 65-112 163-211 (365)
46 PRK14280 chaperone protein Dna 96.4 0.0019 4.2E-08 55.1 2.4 39 64-112 159-212 (376)
47 PRK14282 chaperone protein Dna 96.4 0.0021 4.6E-08 54.6 2.6 39 64-112 168-221 (369)
48 PRK14286 chaperone protein Dna 96.4 0.002 4.4E-08 54.9 2.4 37 66-112 168-215 (372)
49 PRK14301 chaperone protein Dna 96.4 0.0019 4.2E-08 55.1 2.3 37 66-112 162-209 (373)
50 TIGR02642 phage_xxxx uncharact 96.4 0.0024 5.1E-08 50.6 2.5 25 101-125 100-129 (186)
51 PRK14295 chaperone protein Dna 96.4 0.0025 5.5E-08 54.7 2.7 38 65-112 183-231 (389)
52 PRK14288 chaperone protein Dna 96.4 0.0031 6.7E-08 53.8 3.2 39 64-112 155-204 (369)
53 PTZ00037 DnaJ_C chaperone prot 96.3 0.0031 6.6E-08 55.0 2.9 41 64-112 165-220 (421)
54 PRK14276 chaperone protein Dna 96.3 0.0024 5.1E-08 54.6 2.1 38 65-112 163-215 (380)
55 PRK14284 chaperone protein Dna 96.3 0.0025 5.4E-08 54.7 2.2 38 65-112 175-223 (391)
56 PRK14277 chaperone protein Dna 96.3 0.0028 6E-08 54.3 2.4 39 64-112 171-224 (386)
57 PRK14294 chaperone protein Dna 96.2 0.003 6.5E-08 53.7 2.5 38 65-112 161-209 (366)
58 PLN03165 chaperone protein dna 96.2 0.0046 9.9E-08 45.3 3.1 33 67-112 54-98 (111)
59 PRK10767 chaperone protein Dna 96.2 0.003 6.4E-08 53.7 2.4 38 65-112 159-207 (371)
60 PRK14289 chaperone protein Dna 96.2 0.0026 5.7E-08 54.3 2.1 39 64-112 170-223 (386)
61 TIGR02349 DnaJ_bact chaperone 96.2 0.0031 6.7E-08 53.1 2.4 38 65-112 160-212 (354)
62 PRK14281 chaperone protein Dna 96.1 0.0039 8.5E-08 53.6 2.7 39 64-112 178-231 (397)
63 PRK14290 chaperone protein Dna 96.1 0.0046 9.9E-08 52.6 3.0 39 64-112 164-217 (365)
64 PRK14297 chaperone protein Dna 96.0 0.0042 9.2E-08 53.0 2.4 38 65-112 165-217 (380)
65 KOG2824 Glutaredoxin-related p 96.0 0.011 2.3E-07 49.6 4.4 53 64-118 228-280 (281)
66 PRK14287 chaperone protein Dna 95.9 0.0043 9.3E-08 53.0 2.1 39 64-112 154-207 (371)
67 PRK14293 chaperone protein Dna 95.8 0.0065 1.4E-07 51.8 2.7 38 65-112 160-212 (374)
68 PRK14291 chaperone protein Dna 95.6 0.0092 2E-07 51.1 2.9 37 65-112 173-220 (382)
69 PRK14283 chaperone protein Dna 95.6 0.0083 1.8E-07 51.2 2.5 38 65-112 163-215 (378)
70 TIGR02642 phage_xxxx uncharact 95.4 0.013 2.7E-07 46.5 2.7 30 63-92 97-131 (186)
71 PRK14292 chaperone protein Dna 95.3 0.013 2.8E-07 49.8 2.6 38 65-112 157-209 (371)
72 cd03031 GRX_GRX_like Glutaredo 93.9 0.073 1.6E-06 40.4 3.6 48 65-114 99-147 (147)
73 KOG0712 Molecular chaperone (D 91.4 0.15 3.3E-06 43.8 2.6 42 63-112 141-198 (337)
74 TIGR00630 uvra excinuclease AB 85.4 0.59 1.3E-05 44.8 2.4 32 78-111 738-770 (924)
75 cd03031 GRX_GRX_like Glutaredo 83.3 1.3 2.7E-05 33.6 3.0 34 78-124 101-146 (147)
76 PRK00349 uvrA excinuclease ABC 80.8 1.2 2.6E-05 42.9 2.4 31 78-110 740-771 (943)
77 COG0178 UvrA Excinuclease ATPa 76.8 2.4 5.2E-05 40.8 3.1 31 78-110 732-763 (935)
78 PRK00635 excinuclease ABC subu 76.6 1.8 4E-05 44.4 2.4 31 78-110 1609-1640(1809)
79 KOG2824 Glutaredoxin-related p 76.3 3 6.4E-05 35.2 3.2 35 78-125 231-276 (281)
80 COG1198 PriA Primosomal protei 76.1 4.8 0.0001 37.9 4.9 51 64-124 434-487 (730)
81 PF07092 DUF1356: Protein of u 72.5 1.8 3.8E-05 35.7 1.0 28 65-92 27-54 (238)
82 TIGR00630 uvra excinuclease AB 68.2 3.4 7.5E-05 39.7 2.1 24 101-124 737-772 (924)
83 PRK14890 putative Zn-ribbon RN 58.9 9.6 0.00021 25.2 2.3 19 64-82 6-31 (59)
84 PRK00349 uvrA excinuclease ABC 57.7 6.2 0.00014 38.1 1.7 26 101-126 739-776 (943)
85 TIGR00595 priA primosomal prot 56.3 13 0.00028 33.1 3.4 50 64-122 212-264 (505)
86 PF14353 CpXC: CpXC protein 54.2 16 0.00036 26.1 3.1 34 78-112 3-50 (128)
87 PRK00635 excinuclease ABC subu 51.5 8.7 0.00019 39.7 1.7 11 102-112 1609-1619(1809)
88 PRK05580 primosome assembly pr 51.4 20 0.00044 33.1 3.9 49 65-121 381-431 (679)
89 PF03589 Antiterm: Antitermina 48.0 7.7 0.00017 27.4 0.5 34 78-111 7-43 (95)
90 PF13453 zf-TFIIB: Transcripti 45.1 35 0.00076 20.0 3.1 8 101-108 20-27 (41)
91 PF07092 DUF1356: Protein of u 43.9 9.5 0.00021 31.5 0.6 23 102-124 29-51 (238)
92 smart00440 ZnF_C2C2 C2C2 Zinc 43.8 48 0.001 19.6 3.5 30 78-107 2-35 (40)
93 KOG0715 Molecular chaperone (D 43.4 13 0.00028 31.0 1.2 44 60-113 176-230 (288)
94 PRK14873 primosome assembly pr 40.7 30 0.00065 32.2 3.3 48 64-121 382-432 (665)
95 PF08273 Prim_Zn_Ribbon: Zinc- 40.1 18 0.00039 21.8 1.3 11 78-88 5-15 (40)
96 COG0178 UvrA Excinuclease ATPa 37.7 20 0.00044 34.8 1.8 22 101-122 731-764 (935)
97 PF01096 TFIIS_C: Transcriptio 37.2 56 0.0012 19.2 3.1 30 78-107 2-35 (39)
98 PRK04023 DNA polymerase II lar 35.9 29 0.00062 34.4 2.5 95 14-120 570-672 (1121)
99 PF00098 zf-CCHC: Zinc knuckle 34.6 17 0.00038 18.1 0.5 12 102-113 2-13 (18)
100 TIGR02098 MJ0042_CXXC MJ0042 f 33.1 48 0.001 18.8 2.3 7 101-107 26-32 (38)
101 PF14354 Lar_restr_allev: Rest 33.0 63 0.0014 20.0 3.0 28 78-108 5-37 (61)
102 KOG0541 Alkyl hydroperoxide re 32.6 18 0.00039 28.5 0.5 34 6-41 54-94 (171)
103 PF13717 zinc_ribbon_4: zinc-r 31.1 47 0.001 19.2 2.0 6 101-106 26-31 (36)
104 PRK05978 hypothetical protein; 31.0 24 0.00053 27.0 1.0 25 78-107 35-59 (148)
105 PF08792 A2L_zn_ribbon: A2L zi 30.6 56 0.0012 18.8 2.2 12 78-89 5-16 (33)
106 TIGR03655 anti_R_Lar restricti 30.4 70 0.0015 19.7 2.9 13 78-90 3-15 (53)
107 PF07295 DUF1451: Protein of u 30.0 26 0.00056 26.6 1.0 12 73-84 109-120 (146)
108 PF13719 zinc_ribbon_5: zinc-r 29.9 36 0.00078 19.7 1.4 6 101-106 26-31 (37)
109 COG0678 AHP1 Peroxiredoxin [Po 29.1 24 0.00053 27.6 0.7 41 6-48 48-95 (165)
110 PRK00488 pheS phenylalanyl-tRN 27.4 40 0.00087 29.1 1.8 41 48-91 240-283 (339)
111 PF13901 DUF4206: Domain of un 26.4 22 0.00048 28.0 0.0 41 63-108 140-180 (202)
112 PF12387 Peptidase_C74: Pestiv 25.7 33 0.00072 27.5 0.9 26 63-88 160-187 (200)
113 KOG2907 RNA polymerase I trans 25.6 37 0.00081 25.2 1.1 28 78-107 76-109 (116)
114 smart00778 Prim_Zn_Ribbon Zinc 24.8 57 0.0012 19.4 1.6 10 78-87 5-14 (37)
115 PF03660 PHF5: PHF5-like prote 24.1 22 0.00049 26.0 -0.3 17 64-84 19-35 (106)
116 smart00709 Zpr1 Duplicated dom 24.1 1.3E+02 0.0027 23.1 3.8 34 78-111 2-40 (160)
117 KOG1705 Uncharacterized conser 23.5 23 0.00049 25.7 -0.4 19 65-87 20-38 (110)
118 TIGR00757 RNaseEG ribonuclease 23.5 43 0.00093 29.4 1.3 12 101-112 391-402 (414)
119 cd01129 PulE-GspE PulE/GspE Th 23.2 36 0.00078 27.6 0.7 10 64-73 216-225 (264)
120 PF01155 HypA: Hydrogenase exp 22.4 78 0.0017 22.6 2.2 29 60-88 65-98 (113)
121 PF03367 zf-ZPR1: ZPR1 zinc-fi 22.2 1.3E+02 0.0028 23.0 3.6 34 78-111 3-41 (161)
122 PRK00420 hypothetical protein; 22.2 60 0.0013 23.8 1.6 9 110-118 39-47 (112)
123 PF05180 zf-DNL: DNL zinc fing 21.0 62 0.0013 21.6 1.4 28 78-107 6-36 (66)
124 PRK12380 hydrogenase nickel in 20.9 78 0.0017 22.7 2.0 28 60-87 65-97 (113)
125 PRK11032 hypothetical protein; 20.7 51 0.0011 25.6 1.0 10 74-83 122-131 (160)
126 KOG1701 Focal adhesion adaptor 20.6 84 0.0018 28.4 2.5 67 7-74 393-461 (468)
127 PF09526 DUF2387: Probable met 20.4 1.8E+02 0.0039 19.5 3.6 28 78-107 10-37 (71)
128 PRK14810 formamidopyrimidine-D 20.3 1.3E+02 0.0028 24.6 3.4 11 73-83 241-251 (272)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.8e-15 Score=129.23 Aligned_cols=76 Identities=32% Similarity=0.706 Sum_probs=66.5
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|++.+.|+..+ +.+++.+.|++|+|+|++ +|++|+|+|++...++.+.++.+++|+.|+|+|++| |+
T Consensus 122 l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~ 201 (371)
T COG0484 122 LEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCG 201 (371)
T ss_pred EEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCC
Confidence 78888887664 888999999999999987 999999999988887545555559999999999999 99
Q ss_pred CCCCCeEEe
Q 032882 116 NCNGAGFMG 124 (131)
Q Consensus 116 ~C~G~G~v~ 124 (131)
.|+|+|++.
T Consensus 202 ~C~G~G~v~ 210 (371)
T COG0484 202 KCKGKGRVK 210 (371)
T ss_pred CCCCCCeEe
Confidence 999999975
No 2
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.36 E-value=1.7e-12 Score=85.85 Aligned_cols=54 Identities=41% Similarity=1.008 Sum_probs=41.6
Q ss_pred CCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE----CCCCCCCe
Q 032882 68 CPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL----CGNCNGAG 121 (131)
Q Consensus 68 C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii----C~~C~G~G 121 (131)
|+.|+|+|++ +|+.|+|+|+++..++. +.++.+++|+.|+|+|++| |+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 8899999994 99999999999887753 4444459999999999997 99999986
No 3
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=3.1e-12 Score=108.22 Aligned_cols=79 Identities=27% Similarity=0.606 Sum_probs=66.1
Q ss_pred eeEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882 48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL-- 113 (131)
Q Consensus 48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii-- 113 (131)
.|+|.+.|...+ ++++|.+.|+.|+|+|+. +|+.|+|+|++...+++ +.++..++|+.|+|+|+++
T Consensus 131 ~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~ 210 (369)
T PRK14282 131 EIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGE 210 (369)
T ss_pred EEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCC
Confidence 367777776664 777899999999999975 89999999998877764 4555569999999999998
Q ss_pred -CCCCCCCeEEeEe
Q 032882 114 -CGNCNGAGFMGGF 126 (131)
Q Consensus 114 -C~~C~G~G~v~g~ 126 (131)
|+.|+|+|++...
T Consensus 211 ~C~~C~G~g~v~~~ 224 (369)
T PRK14282 211 YCHECGGSGRIRRR 224 (369)
T ss_pred CCCCCCCceeEEEE
Confidence 9999999988753
No 4
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=3.9e-12 Score=108.14 Aligned_cols=77 Identities=26% Similarity=0.667 Sum_probs=64.6
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--- 113 (131)
|+|.+.|...+ +++++.+.|+.|+|+|+. +|+.|+|+|++...++. +.++..++|+.|+|+|+++
T Consensus 119 l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~ 198 (378)
T PRK14278 119 MRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDP 198 (378)
T ss_pred EEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCC
Confidence 67777776654 777899999999999986 89999999998776643 5555568999999999999
Q ss_pred CCCCCCCeEEeE
Q 032882 114 CGNCNGAGFMGG 125 (131)
Q Consensus 114 C~~C~G~G~v~g 125 (131)
|+.|+|+|++..
T Consensus 199 C~~C~G~g~v~~ 210 (378)
T PRK14278 199 CHECAGDGRVRA 210 (378)
T ss_pred CCCCCCceeEec
Confidence 999999998854
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=3.6e-12 Score=108.45 Aligned_cols=78 Identities=27% Similarity=0.648 Sum_probs=64.7
Q ss_pred eeEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882 48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL-- 113 (131)
Q Consensus 48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii-- 113 (131)
.|+|.+.|+..+ +++++.+.|+.|+|+|+. +|+.|+|+|++...++. +.++.+++|+.|+|+|+++
T Consensus 120 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 199 (377)
T PRK14298 120 DLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIES 199 (377)
T ss_pred EEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCC
Confidence 366777676654 777899999999999985 89999999998877653 3444559999999999998
Q ss_pred -CCCCCCCeEEeE
Q 032882 114 -CGNCNGAGFMGG 125 (131)
Q Consensus 114 -C~~C~G~G~v~g 125 (131)
|+.|+|+|++..
T Consensus 200 ~C~~C~G~g~v~~ 212 (377)
T PRK14298 200 PCPVCSGTGKVRK 212 (377)
T ss_pred CCCCCCCccEEEE
Confidence 999999999865
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=4.4e-12 Score=107.73 Aligned_cols=77 Identities=29% Similarity=0.571 Sum_probs=63.8
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecc--eEEcceeCCCCCccceEE---
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNG--QFKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g--~~q~~~~C~~C~G~G~ii--- 113 (131)
|++.+.|+..+ +++++.+.|+.|+|+|.. +|+.|+|+|++...++++ .++.+++|+.|+|+|+++
T Consensus 129 l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~ 208 (372)
T PRK14296 129 IYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNK 208 (372)
T ss_pred eeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeeccc
Confidence 56666666554 778899999999999985 899999999988877653 334458999999999999
Q ss_pred CCCCCCCeEEeE
Q 032882 114 CGNCNGAGFMGG 125 (131)
Q Consensus 114 C~~C~G~G~v~g 125 (131)
|+.|+|+|++.-
T Consensus 209 C~~C~G~g~v~~ 220 (372)
T PRK14296 209 CKNCKGKGKYLE 220 (372)
T ss_pred ccCCCCceEEEE
Confidence 999999998754
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=4.3e-12 Score=108.44 Aligned_cols=75 Identities=28% Similarity=0.640 Sum_probs=63.4
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|+|.+.|...+ +++.+.+.|+.|+|+|+. +|+.|+|+|++...+.+.+++ ++|+.|+|+|+++ |+
T Consensus 153 l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~i~~~C~ 230 (392)
T PRK14279 153 TTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFS--EPCTDCRGTGSIIEDPCE 230 (392)
T ss_pred EEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEE--EecCCCCceeEEeCCcCC
Confidence 66666676654 677899999999999985 899999999987776444455 9999999999999 99
Q ss_pred CCCCCeEEeE
Q 032882 116 NCNGAGFMGG 125 (131)
Q Consensus 116 ~C~G~G~v~g 125 (131)
.|+|+|++..
T Consensus 231 ~C~G~g~v~~ 240 (392)
T PRK14279 231 ECKGTGVTTR 240 (392)
T ss_pred CCCCCeEEEE
Confidence 9999999864
No 8
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.29 E-value=9.9e-12 Score=90.85 Aligned_cols=67 Identities=30% Similarity=0.650 Sum_probs=56.3
Q ss_pred ecceeCCCCCCCCcccCCCCCCCCEEEEEeecceEEcceeCCCCCccceEECCCCCCCeEEeEeeecC
Q 032882 63 TNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCNGAGFMGGFMSTG 130 (131)
Q Consensus 63 ~r~v~C~~C~GsG~~~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~iiC~~C~G~G~v~g~~~~~ 130 (131)
...+.|..|+|+|..+|+.|+|+|++...+. +.++...+|+.|+|+|+.+|+.|+|+|++..|+--|
T Consensus 39 ~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~-g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~ 105 (111)
T PLN03165 39 ENTQPCFPCSGTGAQVCRFCVGSGNVTVELG-GGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRR 105 (111)
T ss_pred ccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC-CcEEEEEECCCCCCcceeeCCCCCCCEEEeeeeccc
Confidence 4568999999999999999999999876542 223334999999999999999999999999887654
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=5.8e-12 Score=107.07 Aligned_cols=78 Identities=26% Similarity=0.650 Sum_probs=65.0
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--- 113 (131)
|++.+.|...+ +++++.+.|+.|+|+|.. +|+.|+|+|++...+++ +.++...+|+.|+|+|+++
T Consensus 126 l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~ 205 (380)
T PRK14276 126 VNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEP 205 (380)
T ss_pred EEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCC
Confidence 66666676654 777899999999999975 89999999998877654 4455569999999999998
Q ss_pred CCCCCCCeEEeEe
Q 032882 114 CGNCNGAGFMGGF 126 (131)
Q Consensus 114 C~~C~G~G~v~g~ 126 (131)
|+.|+|+|++...
T Consensus 206 C~~C~G~g~~~~~ 218 (380)
T PRK14276 206 CQTCHGTGHEKQA 218 (380)
T ss_pred CCCCCCceEEEEE
Confidence 9999999998643
No 10
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=8.2e-12 Score=106.01 Aligned_cols=78 Identities=27% Similarity=0.601 Sum_probs=64.5
Q ss_pred eeEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882 48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL-- 113 (131)
Q Consensus 48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii-- 113 (131)
.|+|.+.|...+ +++++.+.|+.|+|+|.. .|+.|+|+|++...+++ +.++...+|+.|+|+|+++
T Consensus 122 ~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 201 (376)
T PRK14280 122 TMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKE 201 (376)
T ss_pred EEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecC
Confidence 366777776554 778999999999999975 89999999998777653 4444558999999999998
Q ss_pred -CCCCCCCeEEeE
Q 032882 114 -CGNCNGAGFMGG 125 (131)
Q Consensus 114 -C~~C~G~G~v~g 125 (131)
|+.|+|+|++..
T Consensus 202 ~C~~C~G~g~v~~ 214 (376)
T PRK14280 202 KCPTCHGKGKVRK 214 (376)
T ss_pred CCCCCCCceEEEE
Confidence 999999999864
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=6.8e-12 Score=106.48 Aligned_cols=75 Identities=29% Similarity=0.590 Sum_probs=62.9
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|+|.+.|+..+ +++++.+.|++|+|+|.. +|+.|+|+|++...+.+.+++ ++|+.|+|+|+++ |+
T Consensus 130 l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~--~~C~~C~G~G~~~~~~C~ 207 (372)
T PRK14286 130 LEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVA--TTCPTCRGKGTVISNPCK 207 (372)
T ss_pred EEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEE--EeCCCCCceeeEecccCC
Confidence 66777776654 777899999999999985 899999999987765433444 8999999999999 99
Q ss_pred CCCCCeEEeE
Q 032882 116 NCNGAGFMGG 125 (131)
Q Consensus 116 ~C~G~G~v~g 125 (131)
.|+|+|++..
T Consensus 208 ~C~G~g~~~~ 217 (372)
T PRK14286 208 TCGGQGLQEK 217 (372)
T ss_pred CCCCCcEEec
Confidence 9999999865
No 12
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=8.4e-12 Score=106.28 Aligned_cols=77 Identities=26% Similarity=0.571 Sum_probs=64.5
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--- 113 (131)
|+|.+.|...+ ++++|.+.|+.|+|+|.. +|+.|+|+|++...+++ +.+++.++|+.|+|+|+++
T Consensus 135 l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~ 214 (386)
T PRK14277 135 LELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDP 214 (386)
T ss_pred EEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCC
Confidence 66677676654 677899999999999975 89999999998777654 4555558999999999999
Q ss_pred CCCCCCCeEEeE
Q 032882 114 CGNCNGAGFMGG 125 (131)
Q Consensus 114 C~~C~G~G~v~g 125 (131)
|+.|+|+|++..
T Consensus 215 C~~C~G~g~v~~ 226 (386)
T PRK14277 215 CNKCGGTGRIRR 226 (386)
T ss_pred CCCCCCCcEEee
Confidence 999999999854
No 13
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=1e-11 Score=106.16 Aligned_cols=77 Identities=29% Similarity=0.670 Sum_probs=64.3
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---C
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL---C 114 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii---C 114 (131)
|+|.+.|...+ +++++.+.|+.|+|+|.. .|+.|+|+|++...+++ +.++.+++|+.|+|+|+++ |
T Consensus 143 l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C 222 (397)
T PRK14281 143 LKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRC 222 (397)
T ss_pred EEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCC
Confidence 66666676554 777899999999999986 89999999998777653 4555568999999999998 9
Q ss_pred CCCCCCeEEeE
Q 032882 115 GNCNGAGFMGG 125 (131)
Q Consensus 115 ~~C~G~G~v~g 125 (131)
+.|+|+|++..
T Consensus 223 ~~C~G~g~v~~ 233 (397)
T PRK14281 223 PACYGEGIKQG 233 (397)
T ss_pred CCCCCCccEec
Confidence 99999999864
No 14
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.25 E-value=1.2e-11 Score=103.71 Aligned_cols=78 Identities=27% Similarity=0.580 Sum_probs=64.7
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--- 113 (131)
|+|.+.|...+ +++++.+.|+.|+|+|.. .|+.|+|+|.+...+++ +.++..++|+.|.|+|+++
T Consensus 123 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~ 202 (354)
T TIGR02349 123 LELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEP 202 (354)
T ss_pred EEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCC
Confidence 66677676654 777899999999999975 89999999998887764 3444458999999999998
Q ss_pred CCCCCCCeEEeEe
Q 032882 114 CGNCNGAGFMGGF 126 (131)
Q Consensus 114 C~~C~G~G~v~g~ 126 (131)
|+.|+|+|++...
T Consensus 203 C~~C~G~g~v~~~ 215 (354)
T TIGR02349 203 CSTCKGKGRVKER 215 (354)
T ss_pred CCCCCCCcEeccc
Confidence 9999999988653
No 15
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=9.3e-12 Score=106.17 Aligned_cols=75 Identities=24% Similarity=0.586 Sum_probs=62.4
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|++.+.|+..+ +++++.+.|+.|+|+|+. .|+.|+|+|++...+.+ ++...+|+.|+|+|+++ |+
T Consensus 138 l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~--~~~~~~C~~C~G~G~~~~~~C~ 215 (391)
T PRK14284 138 ITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGF--FSMASTCPECGGEGRVITDPCS 215 (391)
T ss_pred EEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEece--EEEEEECCCCCCCCcccCCcCC
Confidence 66677676654 777899999999999986 89999999998766533 33448999999999998 99
Q ss_pred CCCCCeEEeE
Q 032882 116 NCNGAGFMGG 125 (131)
Q Consensus 116 ~C~G~G~v~g 125 (131)
.|+|+|++..
T Consensus 216 ~C~G~g~v~~ 225 (391)
T PRK14284 216 VCRGQGRIKD 225 (391)
T ss_pred CCCCcceecc
Confidence 9999998854
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1.1e-11 Score=104.95 Aligned_cols=75 Identities=25% Similarity=0.633 Sum_probs=61.9
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|+|.+.|+..+ +++++.+.|+.|+|+|.. .|+.|+|+|++.... +.++.+++|+.|+|+|+++ |+
T Consensus 126 l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~~~~~C~ 203 (365)
T PRK14285 126 IEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG--GFFRVTTTCPKCYGNGKIISNPCK 203 (365)
T ss_pred EEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecC--ceeEEeeecCCCCCcccccCCCCC
Confidence 66777776654 777899999999999975 899999999987643 3334449999999999998 99
Q ss_pred CCCCCeEEeE
Q 032882 116 NCNGAGFMGG 125 (131)
Q Consensus 116 ~C~G~G~v~g 125 (131)
.|+|+|++..
T Consensus 204 ~C~G~g~v~~ 213 (365)
T PRK14285 204 SCKGKGSLKK 213 (365)
T ss_pred CCCCCCEEec
Confidence 9999998864
No 17
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.6e-11 Score=104.06 Aligned_cols=76 Identities=22% Similarity=0.600 Sum_probs=62.1
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|++.+.|...+ +++.+.+.|+.|+|+|.. +|+.|+|+|.+.....+.+++ .+|+.|+|+|+++ |+
T Consensus 125 l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~~~~~C~ 202 (372)
T PRK14300 125 LTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIE--QACHKCQGNGQIIKNPCK 202 (372)
T ss_pred EEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEE--EeCCCCCccceEeCCCCC
Confidence 55666665554 777899999999999974 899999999987655443444 8999999999999 99
Q ss_pred CCCCCeEEeEe
Q 032882 116 NCNGAGFMGGF 126 (131)
Q Consensus 116 ~C~G~G~v~g~ 126 (131)
.|+|+|++...
T Consensus 203 ~C~G~g~v~~~ 213 (372)
T PRK14300 203 KCHGMGRYHKQ 213 (372)
T ss_pred CCCCceEEEee
Confidence 99999998653
No 18
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.3e-11 Score=104.64 Aligned_cols=75 Identities=28% Similarity=0.629 Sum_probs=62.6
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CCC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CGN 116 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~~ 116 (131)
|++.+.|...+ +++++.+.|+.|+|+|+. +|+.|+|+|++...+.+.+++ ++|+.|.|+|+++ |+.
T Consensus 120 l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~~~~~C~~ 197 (369)
T PRK14288 120 IELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFA--QTCGACQGKGKIIKTPCQA 197 (369)
T ss_pred ccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEE--EecCCCCCCceEccccCcc
Confidence 66677676654 677899999999999976 899999999987766444444 8999999999998 999
Q ss_pred CCCCeEEeE
Q 032882 117 CNGAGFMGG 125 (131)
Q Consensus 117 C~G~G~v~g 125 (131)
|+|.|++..
T Consensus 198 C~G~g~v~~ 206 (369)
T PRK14288 198 CKGKTYILK 206 (369)
T ss_pred CCCcceEEE
Confidence 999998865
No 19
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.4e-11 Score=104.64 Aligned_cols=75 Identities=28% Similarity=0.687 Sum_probs=61.8
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|++.+.|...+ +++++.+.|+.|+|+|.. +|+.|+|+|++...+.+ ++...+|+.|+|+|+++ |+
T Consensus 124 l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~--~~~~~~C~~C~G~G~~~~~~C~ 201 (373)
T PRK14301 124 LTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGF--FQIAVPCPVCRGEGRVITHPCP 201 (373)
T ss_pred EeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeee--EEEEEeCCCCCceeeecCCCCC
Confidence 66666666554 777899999999999975 89999999998765543 33459999999999998 99
Q ss_pred CCCCCeEEeE
Q 032882 116 NCNGAGFMGG 125 (131)
Q Consensus 116 ~C~G~G~v~g 125 (131)
.|+|+|++..
T Consensus 202 ~C~G~g~v~~ 211 (373)
T PRK14301 202 KCKGSGIVQQ 211 (373)
T ss_pred CCCCCceecc
Confidence 9999998854
No 20
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2e-11 Score=103.63 Aligned_cols=77 Identities=27% Similarity=0.647 Sum_probs=64.1
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--- 113 (131)
|+|.+.|...+ +++++.+.|+.|+|+|.. +|+.|+|+|++...+++ +.++...+|+.|+|+|.++
T Consensus 128 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~ 207 (380)
T PRK14297 128 INLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDP 207 (380)
T ss_pred EEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCC
Confidence 67777776654 777899999999999975 89999999998877654 4455569999999999998
Q ss_pred CCCCCCCeEEeE
Q 032882 114 CGNCNGAGFMGG 125 (131)
Q Consensus 114 C~~C~G~G~v~g 125 (131)
|+.|+|+|++..
T Consensus 208 C~~C~G~g~v~~ 219 (380)
T PRK14297 208 CNKCHGKGKVRK 219 (380)
T ss_pred CCCCCCCeEEEe
Confidence 999999998754
No 21
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2e-11 Score=103.62 Aligned_cols=78 Identities=27% Similarity=0.655 Sum_probs=64.6
Q ss_pred eeEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882 48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL-- 113 (131)
Q Consensus 48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii-- 113 (131)
.|++.+.|+..+ +++++.+.|+.|+|+|.. +|+.|+|+|++...+++ +.++...+|+.|.|+|+++
T Consensus 117 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~ 196 (371)
T PRK14287 117 TMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQ 196 (371)
T ss_pred EEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccc
Confidence 366777776554 778899999999999975 89999999998777654 4455568999999999998
Q ss_pred -CCCCCCCeEEeE
Q 032882 114 -CGNCNGAGFMGG 125 (131)
Q Consensus 114 -C~~C~G~G~v~g 125 (131)
|..|+|+|++..
T Consensus 197 ~C~~C~G~g~v~~ 209 (371)
T PRK14287 197 KCATCGGKGKVRK 209 (371)
T ss_pred cCCCCCCeeEEee
Confidence 999999998864
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2e-11 Score=104.30 Aligned_cols=75 Identities=31% Similarity=0.600 Sum_probs=62.6
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|+|.+.|...+ +++++.+.|++|+|+|.. +|+.|+|+|++...+. .++.+.+|+.|+|+|+++ |+
T Consensus 146 l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g--~~~~~~~C~~C~G~G~~~~~~C~ 223 (389)
T PRK14295 146 VTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSG--GFSLSEPCPDCKGRGLIADDPCL 223 (389)
T ss_pred EEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEec--ceEEEEecCCCcceeEEeccCCC
Confidence 66666676654 777899999999999975 8999999999877653 334448999999999999 99
Q ss_pred CCCCCeEEeE
Q 032882 116 NCNGAGFMGG 125 (131)
Q Consensus 116 ~C~G~G~v~g 125 (131)
.|+|+|++..
T Consensus 224 ~C~G~g~~~~ 233 (389)
T PRK14295 224 VCKGSGRAKS 233 (389)
T ss_pred CCCCCceEee
Confidence 9999998864
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=2.2e-11 Score=102.89 Aligned_cols=76 Identities=24% Similarity=0.588 Sum_probs=63.0
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|+|.+.|...+ +++++.+.|+.|+|+|.. .|+.|+|+|++...+.+.+++ .+|+.|+|+|+++ |+
T Consensus 122 l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~~~~~C~ 199 (371)
T PRK10767 122 MEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQ--QTCPTCHGRGKIIKDPCK 199 (371)
T ss_pred EEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEE--EeCCCCCCceeECCCCCC
Confidence 66777776654 777899999999999975 899999999987766433444 8999999999998 99
Q ss_pred CCCCCeEEeEe
Q 032882 116 NCNGAGFMGGF 126 (131)
Q Consensus 116 ~C~G~G~v~g~ 126 (131)
.|+|+|++...
T Consensus 200 ~C~G~g~v~~~ 210 (371)
T PRK10767 200 KCHGQGRVEKE 210 (371)
T ss_pred CCCCCceEeee
Confidence 99999998653
No 24
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=3e-11 Score=102.66 Aligned_cols=79 Identities=27% Similarity=0.646 Sum_probs=65.1
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--- 113 (131)
|++.+.|...+ +++++.+.|+.|+|+|.. .|+.|+|+|++...+++ +.++...+|+.|+|+|+++
T Consensus 134 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~ 213 (386)
T PRK14289 134 VKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKK 213 (386)
T ss_pred EEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcC
Confidence 56666666654 777899999999999975 89999999998887654 3444459999999999998
Q ss_pred CCCCCCCeEEeEee
Q 032882 114 CGNCNGAGFMGGFM 127 (131)
Q Consensus 114 C~~C~G~G~v~g~~ 127 (131)
|+.|+|+|++....
T Consensus 214 C~~C~G~g~v~~~~ 227 (386)
T PRK14289 214 CKKCGGEGIVYGEE 227 (386)
T ss_pred CCCCCCCcEEeeeE
Confidence 99999999987643
No 25
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=3.1e-11 Score=102.06 Aligned_cols=75 Identities=24% Similarity=0.547 Sum_probs=62.3
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
|++.+.|...+ +++++.+.|+.|+|+|.. .|+.|+|+|.+.....+.+++ ++|+.|+|+|+++ |+
T Consensus 124 l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~--~~C~~C~G~G~~~~~~C~ 201 (366)
T PRK14294 124 LTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIR--TTCPRCRGMGKVIVSPCK 201 (366)
T ss_pred EEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEE--eeCCCCCCcCeecCcCCC
Confidence 67777776654 777899999999999975 799999999987654333444 9999999999998 99
Q ss_pred CCCCCeEEeE
Q 032882 116 NCNGAGFMGG 125 (131)
Q Consensus 116 ~C~G~G~v~g 125 (131)
.|+|+|++..
T Consensus 202 ~C~G~g~v~~ 211 (366)
T PRK14294 202 TCHGQGRVRV 211 (366)
T ss_pred CCCCceEeec
Confidence 9999999864
No 26
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.19 E-value=3.6e-11 Score=104.04 Aligned_cols=78 Identities=29% Similarity=0.670 Sum_probs=62.9
Q ss_pred eEEeeecCcc----ceeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeecc--eEEcceeCCCCCccceEE----
Q 032882 49 LKVKATDSNQ----SSTKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFNG--QFKAGGLCWLCRGKREIL---- 113 (131)
Q Consensus 49 ~~~~~~~~~~----~~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~g--~~q~~~~C~~C~G~G~ii---- 113 (131)
|++.+.|... .+++++.+.|+.|+|+|+. +|+.|+|+|+++..++++ .++.+++|+.|+|+|+++
T Consensus 130 l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~ 209 (421)
T PTZ00037 130 LKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESK 209 (421)
T ss_pred eeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccc
Confidence 5666666554 4788999999999999986 899999999977766543 223348999999999986
Q ss_pred -CCCCCCCeEEeEe
Q 032882 114 -CGNCNGAGFMGGF 126 (131)
Q Consensus 114 -C~~C~G~G~v~g~ 126 (131)
|+.|+|+|++...
T Consensus 210 ~C~~C~G~g~v~~~ 223 (421)
T PTZ00037 210 KCKNCSGKGVKKTR 223 (421)
T ss_pred cCCcCCCcceeeee
Confidence 9999999998653
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=7.5e-11 Score=99.71 Aligned_cols=79 Identities=30% Similarity=0.651 Sum_probs=64.6
Q ss_pred eeEEeeecCccc----eeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeecce--EEcceeCCCCCccceEE---
Q 032882 48 SLKVKATDSNQS----STKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFNGQ--FKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 48 ~~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~g~--~q~~~~C~~C~G~G~ii--- 113 (131)
.|++.+.|...+ +++.+.+.|+.|+|+|.. .|+.|+|+|++...+.++. ++...+|+.|.|+|+++
T Consensus 128 ~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~ 207 (365)
T PRK14290 128 NLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEK 207 (365)
T ss_pred EEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCC
Confidence 366777776654 677899999999999985 8999999999877765432 23348999999999998
Q ss_pred CCCCCCCeEEeEe
Q 032882 114 CGNCNGAGFMGGF 126 (131)
Q Consensus 114 C~~C~G~G~v~g~ 126 (131)
|+.|+|+|++...
T Consensus 208 C~~C~G~g~v~~~ 220 (365)
T PRK14290 208 CPRCNGTGTVVVN 220 (365)
T ss_pred CCCCCCceeEEEe
Confidence 9999999998764
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=5.4e-11 Score=101.21 Aligned_cols=75 Identities=21% Similarity=0.481 Sum_probs=61.5
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE--CCC
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL--CGN 116 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii--C~~ 116 (131)
|+|.+.|+..+ +++++.+.|..|+|+|.. .|+.|+|+|++.....+.+++ .+|+.|+|+|.+. |+.
T Consensus 136 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~--~~C~~C~G~G~~~~~C~~ 213 (382)
T PRK14291 136 VEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRIS--QTCPTCGGEGVLREPCSK 213 (382)
T ss_pred EEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEE--ecCCCCCCceEEccCCCC
Confidence 66666676654 777899999999999975 899999999987765444444 9999999999654 999
Q ss_pred CCCCeEEeE
Q 032882 117 CNGAGFMGG 125 (131)
Q Consensus 117 C~G~G~v~g 125 (131)
|+|.|++..
T Consensus 214 C~G~g~v~~ 222 (382)
T PRK14291 214 CNGRGLVIK 222 (382)
T ss_pred CCCCceEEe
Confidence 999998865
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=5.7e-11 Score=100.74 Aligned_cols=77 Identities=29% Similarity=0.588 Sum_probs=62.7
Q ss_pred eEEeeecCcc----ceeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882 49 LKVKATDSNQ----SSTKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 49 ~~~~~~~~~~----~~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--- 113 (131)
|++.+.|... .+++++.+.|+.|+|+|.. +|+.|+|+|++...+++ +.++...+|+.|.|+|+++
T Consensus 123 l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~ 202 (374)
T PRK14293 123 LKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDP 202 (374)
T ss_pred EEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccC
Confidence 5555555444 4788999999999999985 79999999998777654 4455559999999999998
Q ss_pred CCCCCCCeEEeE
Q 032882 114 CGNCNGAGFMGG 125 (131)
Q Consensus 114 C~~C~G~G~v~g 125 (131)
|+.|+|+|++.-
T Consensus 203 C~~C~G~g~v~~ 214 (374)
T PRK14293 203 CDACGGQGVKQV 214 (374)
T ss_pred CCCCCCCccccc
Confidence 999999998754
No 30
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=6.3e-11 Score=100.62 Aligned_cols=77 Identities=26% Similarity=0.621 Sum_probs=64.2
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE---
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL--- 113 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii--- 113 (131)
|++.+.|...+ +++++.+.|+.|+|+|.. .|+.|+|+|++...+++ +.++...+|+.|.|+|+++
T Consensus 126 l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~ 205 (378)
T PRK14283 126 VEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKP 205 (378)
T ss_pred eeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCC
Confidence 66666666554 777899999999999975 89999999998877754 4555558999999999998
Q ss_pred CCCCCCCeEEeE
Q 032882 114 CGNCNGAGFMGG 125 (131)
Q Consensus 114 C~~C~G~G~v~g 125 (131)
|+.|+|+|++..
T Consensus 206 C~~C~G~g~v~~ 217 (378)
T PRK14283 206 CSNCHGKGVVRE 217 (378)
T ss_pred CCCCCCceeecc
Confidence 999999998754
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=2e-10 Score=97.08 Aligned_cols=77 Identities=22% Similarity=0.544 Sum_probs=62.2
Q ss_pred eEEeeecCccc----eeeecceeCCCCCCCCcc-------cCCCCCCCCEEEEEeec--ceEEcceeCCCCCccceEE--
Q 032882 49 LKVKATDSNQS----STKTNSIICPDCDGNGAK-------QCSQCKGNGINSVDHFN--GQFKAGGLCWLCRGKREIL-- 113 (131)
Q Consensus 49 ~~~~~~~~~~~----~~~~r~v~C~~C~GsG~~-------~C~~C~GsG~i~~~~~~--g~~q~~~~C~~C~G~G~ii-- 113 (131)
|++.+.|+..+ +++++.+.|+.|+|+|.. +|+.|+|+|++...++. +.++...+|+.|+|.|+.+
T Consensus 119 l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 198 (371)
T PRK14292 119 ARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITD 198 (371)
T ss_pred EeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCC
Confidence 55555565543 778899999999999963 79999999998766543 4455568999999999998
Q ss_pred -CCCCCCCeEEeE
Q 032882 114 -CGNCNGAGFMGG 125 (131)
Q Consensus 114 -C~~C~G~G~v~g 125 (131)
|+.|+|+|++..
T Consensus 199 ~C~~C~G~g~v~~ 211 (371)
T PRK14292 199 PCTVCRGRGRTLK 211 (371)
T ss_pred CCCCCCCceEEee
Confidence 999999998754
No 32
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.7e-09 Score=88.60 Aligned_cols=74 Identities=28% Similarity=0.683 Sum_probs=62.4
Q ss_pred eEEeeecC----ccceeeecceeCCCCCCCCcc-----cCCCCCCCCEEEEEeec-----ceEEcceeCCCCCccceEE-
Q 032882 49 LKVKATDS----NQSSTKTNSIICPDCDGNGAK-----QCSQCKGNGINSVDHFN-----GQFKAGGLCWLCRGKREIL- 113 (131)
Q Consensus 49 ~~~~~~~~----~~~~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~~-----g~~q~~~~C~~C~G~G~ii- 113 (131)
|+|.+.|. .....++++.+|+.|+|+|.+ .|..|+|+|.....+++ ++++ .+|..|+|+|..+
T Consensus 107 ~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q--~~C~~C~G~G~~~~ 184 (337)
T KOG0712|consen 107 LKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQ--LVCDSCNGSGETIS 184 (337)
T ss_pred EEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccce--eEeccCCCcccccc
Confidence 66666553 345888999999999999998 79999999999888876 4556 9999999999984
Q ss_pred ----CCCCCCCeEEe
Q 032882 114 ----CGNCNGAGFMG 124 (131)
Q Consensus 114 ----C~~C~G~G~v~ 124 (131)
|+.|+|++++.
T Consensus 185 ~kd~C~~C~G~~~v~ 199 (337)
T KOG0712|consen 185 LKDRCKTCSGAKVVR 199 (337)
T ss_pred ccccCcccccchhhh
Confidence 99999998875
No 33
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.4e-06 Score=72.03 Aligned_cols=24 Identities=38% Similarity=0.852 Sum_probs=21.0
Q ss_pred cceeCCCCCCCCcccCCCCCCCCE
Q 032882 64 NSIICPDCDGNGAKQCSQCKGNGI 87 (131)
Q Consensus 64 r~v~C~~C~GsG~~~C~~C~GsG~ 87 (131)
-...|+.|.|.|+..|+.|+|.|.
T Consensus 186 ~v~~ch~c~gRG~~vc~gc~g~G~ 209 (406)
T KOG2813|consen 186 IVTFCHACLGRGAMVCHGCSGSGS 209 (406)
T ss_pred hhhhhhcccCCCceeccCcCCCCc
Confidence 345799999999999999999994
No 34
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.83 E-value=1.4e-05 Score=52.75 Aligned_cols=39 Identities=31% Similarity=0.880 Sum_probs=29.0
Q ss_pred ecceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccc
Q 032882 63 TNSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKR 110 (131)
Q Consensus 63 ~r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G 110 (131)
.....|+.|+|+|.. .|+.|+|+|.++ .. .+|+.|+|.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~--------~~C~~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK--------DPCKTCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS--------SB-SSSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC--------CCCCCCCCcC
Confidence 456799999999986 899999999985 22 8899999986
No 35
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.66 E-value=3.3e-05 Score=70.27 Aligned_cols=59 Identities=31% Similarity=0.620 Sum_probs=45.9
Q ss_pred eeCCCCCCCCcc-----cCCCCCCCCEEEEEee-----c------ceEEcceeCCCCCccceEE----CCCCCCCeEEe
Q 032882 66 IICPDCDGNGAK-----QCSQCKGNGINSVDHF-----N------GQFKAGGLCWLCRGKREIL----CGNCNGAGFMG 124 (131)
Q Consensus 66 v~C~~C~GsG~~-----~C~~C~GsG~i~~~~~-----~------g~~q~~~~C~~C~G~G~ii----C~~C~G~G~v~ 124 (131)
..|+.|+|+|.. .|+.|+|+|....... + .......+|+.|.|.|.+. |+.|.|.|.+.
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 579999999987 7999999999733321 1 1122247999999999987 99999998874
No 36
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=4.8e-05 Score=65.17 Aligned_cols=62 Identities=26% Similarity=0.692 Sum_probs=39.5
Q ss_pred ecceeCCCCCCCCc--------ccCCCCCCC-CEEEEEee-----cceEEcceeCCCCCccceEECCCCCCCeEEeEe
Q 032882 63 TNSIICPDCDGNGA--------KQCSQCKGN-GINSVDHF-----NGQFKAGGLCWLCRGKREILCGNCNGAGFMGGF 126 (131)
Q Consensus 63 ~r~v~C~~C~GsG~--------~~C~~C~Gs-G~i~~~~~-----~g~~q~~~~C~~C~G~G~iiC~~C~G~G~v~g~ 126 (131)
.-.++|+.|+|.|. ..|..|-|- -...-.+. .++=. .+|+.|.|+|.+.|.+|+|.|.+.-|
T Consensus 196 RG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~--~~C~tC~grG~k~C~TC~gtgsll~~ 271 (406)
T KOG2813|consen 196 RGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI--KECHTCKGRGKKPCTTCSGTGSLLNY 271 (406)
T ss_pred CCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc--ccCCcccCCCCcccccccCccceeee
Confidence 45789999999993 256666550 00000000 02212 67999999998889999998877655
No 37
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=9.6e-05 Score=63.80 Aligned_cols=40 Identities=33% Similarity=0.850 Sum_probs=34.8
Q ss_pred cceeCCCCCCCCcc-------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE
Q 032882 64 NSIICPDCDGNGAK-------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL 113 (131)
Q Consensus 64 r~v~C~~C~GsG~~-------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii 113 (131)
..++|++|+|+|.. +|+.|+|+|.+.. .+|+.|+|.|.+.
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~----------~pC~~C~G~G~v~ 210 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK----------DPCGKCKGKGRVK 210 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC----------CCCCCCCCCCeEe
Confidence 68899999999963 8999999999752 7899999999863
No 38
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0016 Score=59.60 Aligned_cols=27 Identities=37% Similarity=0.907 Sum_probs=14.7
Q ss_pred cceeCCCCCCCCcc----cCCCCCCCCEEEE
Q 032882 64 NSIICPDCDGNGAK----QCSQCKGNGINSV 90 (131)
Q Consensus 64 r~v~C~~C~GsG~~----~C~~C~GsG~i~~ 90 (131)
..+.|+.|+|+|.. +|+.|.|+|.+..
T Consensus 52 ~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 52 FEIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred CCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 44555555555554 5555555555433
No 39
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00055 Score=56.92 Aligned_cols=74 Identities=28% Similarity=0.577 Sum_probs=56.3
Q ss_pred eEEeeecCcc----ceeeecceeCCCCCCCCcc------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE---CC
Q 032882 49 LKVKATDSNQ----SSTKTNSIICPDCDGNGAK------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL---CG 115 (131)
Q Consensus 49 ~~~~~~~~~~----~~~~~r~v~C~~C~GsG~~------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii---C~ 115 (131)
+.+.+.++.. .++......|.+|.|.|.. .|..|.|.|....... ..+.. .+|..|.|.|.++ |.
T Consensus 144 ~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~-~~~~~c~~~~~~~~~~c~ 221 (288)
T KOG0715|consen 144 LSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKE-DPFIL-YTCSYCLGRGLVLRDNCQ 221 (288)
T ss_pred cccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccccccccc-CCcce-eecccccccceeccchHH
Confidence 5666666554 4777899999999999976 8999999996544322 11221 2899999999998 99
Q ss_pred CCCCCeEEe
Q 032882 116 NCNGAGFMG 124 (131)
Q Consensus 116 ~C~G~G~v~ 124 (131)
.|.|.|.+.
T Consensus 222 ~~~g~~~v~ 230 (288)
T KOG0715|consen 222 ACSGAGQVR 230 (288)
T ss_pred Hhhcchhhh
Confidence 999998664
No 40
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.63 E-value=0.0013 Score=56.14 Aligned_cols=38 Identities=34% Similarity=0.774 Sum_probs=22.2
Q ss_pred ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|+.|+|+|.. +|+.|+|.|.+.. .+|+.|.|+|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK----------NPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC----------CCCCCCCCceEE
Confidence 3456666666643 4666666665521 456666666654
No 41
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.60 E-value=0.0013 Score=56.51 Aligned_cols=11 Identities=36% Similarity=1.165 Sum_probs=5.3
Q ss_pred cCCCCCCCCEE
Q 032882 78 QCSQCKGNGIN 88 (131)
Q Consensus 78 ~C~~C~GsG~i 88 (131)
.|+.|+|+|..
T Consensus 175 ~C~~C~G~G~~ 185 (392)
T PRK14279 175 PCTTCHGSGAR 185 (392)
T ss_pred cCCCCcccccc
Confidence 45555555543
No 42
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.53 E-value=0.0018 Score=55.35 Aligned_cols=39 Identities=28% Similarity=0.790 Sum_probs=31.2
Q ss_pred cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
....|+.|+|+|.. +|+.|+|+|.+.. .+|+.|.|+|.+
T Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 208 (378)
T PRK14278 155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP----------DPCHECAGDGRV 208 (378)
T ss_pred CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC----------CCCCCCCCceeE
Confidence 34679999999853 6999999998632 669999999875
No 43
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.50 E-value=0.0016 Score=55.74 Aligned_cols=38 Identities=34% Similarity=0.856 Sum_probs=29.5
Q ss_pred ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|+.|+|+|.. +|+.|+|+|.+.. .+|+.|.|.|.+
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 210 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE----------SPCPVCSGTGKV 210 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC----------CCCCCCCCccEE
Confidence 4679999999853 6999999987532 669999998865
No 44
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.50 E-value=0.0021 Score=54.91 Aligned_cols=39 Identities=33% Similarity=0.811 Sum_probs=30.7
Q ss_pred cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
....|+.|+|+|.. +|+.|+|+|.+.. ..|+.|.|.|.+
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 218 (372)
T PRK14296 165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK----------NKCKNCKGKGKY 218 (372)
T ss_pred CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec----------ccccCCCCceEE
Confidence 34679999999853 6999999998742 669999998864
No 45
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.46 E-value=0.0018 Score=55.09 Aligned_cols=38 Identities=37% Similarity=0.858 Sum_probs=23.3
Q ss_pred ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|..|+|+|.. +|+.|+|.|.+.. .+|..|+|+|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 211 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS----------NPCKSCKGKGSL 211 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCcccccC----------CCCCCCCCCCEE
Confidence 3457777776642 5777777776522 457777776644
No 46
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.43 E-value=0.0019 Score=55.09 Aligned_cols=39 Identities=31% Similarity=0.819 Sum_probs=28.7
Q ss_pred cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
....|+.|+|+|.. +|+.|+|+|.+.. .+|+.|.|+|.+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 212 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK----------EKCPTCHGKGKV 212 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec----------CCCCCCCCceEE
Confidence 34678888888752 6888888887632 568888888865
No 47
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.43 E-value=0.0021 Score=54.64 Aligned_cols=39 Identities=33% Similarity=0.860 Sum_probs=30.5
Q ss_pred cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
....|+.|+|+|.. .|+.|+|.|.+.. ..|..|+|.|.+
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 221 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG----------EYCHECGGSGRI 221 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC----------CCCCCCCCceeE
Confidence 35689999999864 6999999997632 669999998854
No 48
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.41 E-value=0.002 Score=54.94 Aligned_cols=37 Identities=35% Similarity=0.884 Sum_probs=19.3
Q ss_pred eeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 66 IICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 66 v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
..|..|+|+|.. +|+.|+|+|.+.. .+|+.|+|.|.+
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~~ 215 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS----------NPCKTCGGQGLQ 215 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec----------ccCCCCCCCcEE
Confidence 455566655532 4555555555421 345555555543
No 49
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.41 E-value=0.0019 Score=55.09 Aligned_cols=37 Identities=30% Similarity=0.762 Sum_probs=22.2
Q ss_pred eeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 66 IICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 66 v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
..|+.|+|+|.. .|+.|+|.|.+.. ..|+.|.|.|.+
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 209 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT----------HPCPKCKGSGIV 209 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC----------CCCCCCCCCcee
Confidence 456666666643 5666666666421 456666666654
No 50
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.38 E-value=0.0024 Score=50.56 Aligned_cols=25 Identities=36% Similarity=0.728 Sum_probs=14.6
Q ss_pred eeCCCCCccceEE-----CCCCCCCeEEeE
Q 032882 101 GLCWLCRGKREIL-----CGNCNGAGFMGG 125 (131)
Q Consensus 101 ~~C~~C~G~G~ii-----C~~C~G~G~v~g 125 (131)
.+|+.|+|+|+++ |+.|+|.|++..
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 5566666665555 666666666543
No 51
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.36 E-value=0.0025 Score=54.74 Aligned_cols=38 Identities=34% Similarity=0.990 Sum_probs=22.5
Q ss_pred ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|..|+|+|.. +|+.|+|+|.+.. .+|..|.|.|.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~~ 231 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD----------DPCLVCKGSGRA 231 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec----------cCCCCCCCCceE
Confidence 3556666666642 5666666665422 456666666644
No 52
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.36 E-value=0.0031 Score=53.78 Aligned_cols=39 Identities=33% Similarity=0.781 Sum_probs=25.9
Q ss_pred cceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
....|+.|+|+|.. .|+.|+|+|.+.. ..|+.|.|.|.+
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 204 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK----------TPCQACKGKTYI 204 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc----------ccCccCCCcceE
Confidence 34567777777753 5777777776532 557777777654
No 53
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.29 E-value=0.0031 Score=55.03 Aligned_cols=41 Identities=29% Similarity=0.678 Sum_probs=32.9
Q ss_pred cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
....|..|+|+|.. +|+.|+|+|.++... .+|..|+|.|.+
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~--------~~C~~C~G~g~v 220 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES--------KKCKNCSGKGVK 220 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc--------ccCCcCCCccee
Confidence 46789999999941 799999999875432 679999999876
No 54
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.27 E-value=0.0024 Score=54.62 Aligned_cols=38 Identities=29% Similarity=0.779 Sum_probs=26.3
Q ss_pred ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|+.|+|+|.. +|+.|+|+|.+.. .+|+.|.|.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~~ 215 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK----------EPCQTCHGTGHE 215 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc----------CCCCCCCCceEE
Confidence 4568888887753 5788888877532 568888877764
No 55
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.26 E-value=0.0025 Score=54.70 Aligned_cols=38 Identities=34% Similarity=0.886 Sum_probs=25.1
Q ss_pred ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|+.|+|+|.. +|+.|+|.|.+.. .+|+.|.|.|.+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 223 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT----------DPCSVCRGQGRI 223 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC----------CcCCCCCCccee
Confidence 4567777777762 6777777776522 457777777654
No 56
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.25 E-value=0.0028 Score=54.33 Aligned_cols=39 Identities=33% Similarity=0.861 Sum_probs=29.5
Q ss_pred cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
....|..|+|+|.. +|..|+|+|.+.. .+|..|+|+|.+
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 224 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT----------DPCNKCGGTGRI 224 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc----------CCCCCCCCCcEE
Confidence 35678888888753 6888888887632 568888888865
No 57
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.23 E-value=0.003 Score=53.69 Aligned_cols=38 Identities=34% Similarity=0.933 Sum_probs=23.5
Q ss_pred ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|+.|+|+|.. +|+.|+|.|.+.. ..|..|.|.|.+
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 209 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV----------SPCKTCHGQGRV 209 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC----------cCCCCCCCceEe
Confidence 3567777777643 5777777776421 457777776654
No 58
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.22 E-value=0.0046 Score=45.33 Aligned_cols=33 Identities=33% Similarity=0.808 Sum_probs=21.1
Q ss_pred eCCCCCCCCcc------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 67 ICPDCDGNGAK------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 67 ~C~~C~GsG~~------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
.|..|+|+|.. .|+.|+|+|. ..|+.|.|+|..
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk-------------~~C~~C~G~G~~ 98 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS-------------LTCTTCQGSGIQ 98 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce-------------eeCCCCCCCEEE
Confidence 67777776653 5667777664 227777777654
No 59
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.22 E-value=0.003 Score=53.68 Aligned_cols=38 Identities=32% Similarity=0.835 Sum_probs=22.5
Q ss_pred ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|+.|+|+|.. +|+.|+|.|.+.. ..|+.|.|+|.+
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 207 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK----------DPCKKCHGQGRV 207 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC----------CCCCCCCCCceE
Confidence 3466666666643 4666666665421 456666666654
No 60
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.21 E-value=0.0026 Score=54.34 Aligned_cols=39 Identities=33% Similarity=0.805 Sum_probs=29.5
Q ss_pred cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
+...|+.|+|+|.. .|+.|+|.|++.. ..|..|.|+|.+
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 223 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK----------KKCKKCGGEGIV 223 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC----------cCCCCCCCCcEE
Confidence 45778888888764 5888888887632 568888888865
No 61
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.21 E-value=0.0031 Score=53.13 Aligned_cols=38 Identities=34% Similarity=0.864 Sum_probs=30.4
Q ss_pred ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|..|+|+|.. +|+.|+|.|.+.. ..|..|.|.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK----------EPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC----------CCCCCCCCCcEe
Confidence 5779999998852 6999999998632 569999998865
No 62
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.12 E-value=0.0039 Score=53.65 Aligned_cols=39 Identities=31% Similarity=0.727 Sum_probs=31.3
Q ss_pred cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
....|..|+|+|.. +|+.|+|.|.+.. .+|+.|.|.|.+
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 231 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK----------DRCPACYGEGIK 231 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC----------CCCCCCCCCccE
Confidence 45689999999853 6999999998642 669999998876
No 63
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.11 E-value=0.0046 Score=52.56 Aligned_cols=39 Identities=33% Similarity=0.856 Sum_probs=31.5
Q ss_pred cceeCCCCCCCCc---------------ccCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGA---------------KQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~---------------~~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
....|+.|+|+|. .+|+.|+|.|.+. . .+|+.|+|+|.+
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~--------~--~~C~~C~G~g~v 217 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP--------E--EKCPRCNGTGTV 217 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc--------c--CCCCCCCCceeE
Confidence 4578999999994 2799999999862 2 679999999875
No 64
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.02 E-value=0.0042 Score=53.03 Aligned_cols=38 Identities=32% Similarity=0.796 Sum_probs=29.3
Q ss_pred ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|+.|+|+|.. +|+.|+|.|.+.. ..|..|.|.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 217 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE----------DPCNKCHGKGKV 217 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC----------CCCCCCCCCeEE
Confidence 5679999999843 6999999997632 669999998854
No 65
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.011 Score=49.62 Aligned_cols=53 Identities=21% Similarity=0.459 Sum_probs=41.5
Q ss_pred cceeCCCCCCCCcccCCCCCCCCEEEEEeecceEEcceeCCCCCccceEECCCCC
Q 032882 64 NSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREILCGNCN 118 (131)
Q Consensus 64 r~v~C~~C~GsG~~~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~iiC~~C~ 118 (131)
..-.|+.|.|.+...|..|+|+=.+.....-.-.. .+|+.|+--|.+.|+.|.
T Consensus 228 ~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~--~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 228 GGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGV--LRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCcCCCcCCcceEecCCCCCceeeeeeccCCCcE--EECcccCCCCceeCCccC
Confidence 34789999999999999999998876631111112 789999999999999996
No 66
>PRK14287 chaperone protein DnaJ; Provisional
Probab=95.94 E-value=0.0043 Score=52.96 Aligned_cols=39 Identities=31% Similarity=0.767 Sum_probs=30.1
Q ss_pred cceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 64 NSIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 64 r~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
+...|+.|+|+|.. +|+.|+|+|.+.. ..|..|.|.|.+
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 207 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK----------QKCATCGGKGKV 207 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc----------ccCCCCCCeeEE
Confidence 35679999999853 6999999998632 669999988865
No 67
>PRK14293 chaperone protein DnaJ; Provisional
Probab=95.82 E-value=0.0065 Score=51.78 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=30.0
Q ss_pred ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|..|+|+|.. +|..|+|.|.+.. .+|..|.|+|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE----------DPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec----------cCCCCCCCCccc
Confidence 4679999999863 6999999998632 669999998864
No 68
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.64 E-value=0.0092 Score=51.08 Aligned_cols=37 Identities=32% Similarity=0.959 Sum_probs=22.5
Q ss_pred ceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|+.|+|+|.. .|+.|+|+|.+ . ..|..|+|.|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~---------~--~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL---------R--EPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE---------c--cCCCCCCCCceE
Confidence 4557777777643 57777777731 1 457777776654
No 69
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.59 E-value=0.0083 Score=51.22 Aligned_cols=38 Identities=34% Similarity=0.831 Sum_probs=28.2
Q ss_pred ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|..|+|+|.. +|..|+|+|.... .+|..|.|+|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v 215 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE----------KPCSNCHGKGVV 215 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC----------CCCCCCCCceee
Confidence 4568888888764 5888888887632 568888888765
No 70
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.40 E-value=0.013 Score=46.48 Aligned_cols=30 Identities=37% Similarity=0.788 Sum_probs=23.6
Q ss_pred ecceeCCCCCCCCcc-----cCCCCCCCCEEEEEe
Q 032882 63 TNSIICPDCDGNGAK-----QCSQCKGNGINSVDH 92 (131)
Q Consensus 63 ~r~v~C~~C~GsG~~-----~C~~C~GsG~i~~~~ 92 (131)
-+...|+.|+|+|.. .|+.|+|+|++....
T Consensus 97 ~~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~ 131 (186)
T TIGR02642 97 LNSCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTV 131 (186)
T ss_pred HcCCcCCCCCCeeEEecCCCCCCCCCCccEEeeeE
Confidence 357889999999976 499999999876543
No 71
>PRK14292 chaperone protein DnaJ; Provisional
Probab=95.29 E-value=0.013 Score=49.80 Aligned_cols=38 Identities=37% Similarity=0.939 Sum_probs=30.1
Q ss_pred ceeCCCCCCCCcc---------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 65 SIICPDCDGNGAK---------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 65 ~v~C~~C~GsG~~---------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
...|..|+|+|.. .|..|+|.|... . .+|..|.|+|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~--~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII--------T--DPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec--------C--CCCCCCCCceEE
Confidence 5779999998854 599999999763 2 679999998865
No 72
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=93.93 E-value=0.073 Score=40.38 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=34.4
Q ss_pred ceeCCCCCCCCcccCCCCCCCCEEEEEeec-ceEEcceeCCCCCccceEEC
Q 032882 65 SIICPDCDGNGAKQCSQCKGNGINSVDHFN-GQFKAGGLCWLCRGKREILC 114 (131)
Q Consensus 65 ~v~C~~C~GsG~~~C~~C~GsG~i~~~~~~-g~~q~~~~C~~C~G~G~iiC 114 (131)
...|..|.|.+-..|..|+|+=.++..... .... .+|+.|+--|.+.|
T Consensus 99 ~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~--~rC~~Cnengl~~c 147 (147)
T cd03031 99 GGVCEGCGGARFVPCSECNGSCKVFAENATAAGGF--LRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCcCeEECCCCCCcceEEeccCcccccE--EECCCCCccccccC
Confidence 456999999999999999999887654321 1112 67888877776644
No 73
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=0.15 Score=43.79 Aligned_cols=42 Identities=26% Similarity=0.718 Sum_probs=29.8
Q ss_pred ecceeCCCCCCCCcc----------------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceE
Q 032882 63 TNSIICPDCDGNGAK----------------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 63 ~r~v~C~~C~GsG~~----------------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~i 112 (131)
.....|..|.|+|.. .|..|+|+|.... ....|+.|.|++.+
T Consensus 141 g~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~--------~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 141 GSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETIS--------LKDRCKTCSGAKVV 198 (337)
T ss_pred CCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCcccccc--------ccccCcccccchhh
Confidence 344478888888875 6778888777522 22778888888765
No 74
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.37 E-value=0.59 Score=44.81 Aligned_cols=32 Identities=28% Similarity=0.727 Sum_probs=22.1
Q ss_pred cCCCCCCCCEEEEEeec-ceEEcceeCCCCCccce
Q 032882 78 QCSQCKGNGINSVDHFN-GQFKAGGLCWLCRGKRE 111 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~-g~~q~~~~C~~C~G~G~ 111 (131)
.|+.|.|.|++.....+ ..+. .+|+.|+|+..
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~--~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVY--VPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEEccCCCCcc--cCCCCcCCcee
Confidence 69999999998765443 3334 67777777643
No 75
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=83.28 E-value=1.3 Score=33.64 Aligned_cols=34 Identities=29% Similarity=0.809 Sum_probs=24.0
Q ss_pred cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE------------CCCCCCCeEEe
Q 032882 78 QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL------------CGNCNGAGFMG 124 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii------------C~~C~G~G~v~ 124 (131)
.|..|.|.+. .+|+.|+|+-+++ |+.|+-.|.++
T Consensus 101 ~C~~Cgg~rf-------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~ 146 (147)
T cd03031 101 VCEGCGGARF-------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLVR 146 (147)
T ss_pred CCCCCCCcCe-------------EECCCCCCcceEEeccCcccccEEECCCCCcccccc
Confidence 6888888665 5677777764432 88888777764
No 76
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=80.76 E-value=1.2 Score=42.88 Aligned_cols=31 Identities=29% Similarity=0.770 Sum_probs=20.9
Q ss_pred cCCCCCCCCEEEEEeec-ceEEcceeCCCCCccc
Q 032882 78 QCSQCKGNGINSVDHFN-GQFKAGGLCWLCRGKR 110 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~-g~~q~~~~C~~C~G~G 110 (131)
.|+.|.|.|++.....+ ..+. .+|+.|+|+.
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~--~~C~~C~G~R 771 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVY--VPCDVCKGKR 771 (943)
T ss_pred CCCcccccceEEEEeccCCCcc--ccCccccCcc
Confidence 68999999988765443 3333 6677776654
No 77
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=76.82 E-value=2.4 Score=40.81 Aligned_cols=31 Identities=29% Similarity=0.758 Sum_probs=22.9
Q ss_pred cCCCCCCCCEEEEEee-cceEEcceeCCCCCccc
Q 032882 78 QCSQCKGNGINSVDHF-NGQFKAGGLCWLCRGKR 110 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~-~g~~q~~~~C~~C~G~G 110 (131)
+|..|.|.|.+...-. +-.+. .+|+.|+|+.
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVy--v~CevC~GkR 763 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVY--VPCEVCHGKR 763 (935)
T ss_pred CCccccCCceEEEEeccCCCce--eeCCCcCCcc
Confidence 7899999998776643 35556 8888887763
No 78
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=76.55 E-value=1.8 Score=44.38 Aligned_cols=31 Identities=39% Similarity=0.588 Sum_probs=22.2
Q ss_pred cCCCCCCCCEEEEEeec-ceEEcceeCCCCCccc
Q 032882 78 QCSQCKGNGINSVDHFN-GQFKAGGLCWLCRGKR 110 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~-g~~q~~~~C~~C~G~G 110 (131)
.|+.|.|.|++.....+ .-+. .+|+.|+|+.
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~--~~C~~C~G~R 1640 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEK--RPCPTCSGFR 1640 (1809)
T ss_pred CCCCCccCceEEEecccCCCcc--cCCCCCCCcC
Confidence 58889999987665433 4444 7888888765
No 79
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.29 E-value=3 Score=35.21 Aligned_cols=35 Identities=29% Similarity=0.705 Sum_probs=25.0
Q ss_pred cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE-----------CCCCCCCeEEeE
Q 032882 78 QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL-----------CGNCNGAGFMGG 125 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii-----------C~~C~G~G~v~g 125 (131)
.|..|.|.++ .+|..|+|+-+++ |..|+-.|.+++
T Consensus 231 ~C~~CGg~rF-------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrC 276 (281)
T KOG2824|consen 231 VCESCGGARF-------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRC 276 (281)
T ss_pred cCCCcCCcce-------------EecCCCCCceeeeeeccCCCcEEECcccCCCCceeC
Confidence 6777777655 5677777775543 888888887765
No 80
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=76.08 E-value=4.8 Score=37.92 Aligned_cols=51 Identities=22% Similarity=0.546 Sum_probs=35.3
Q ss_pred cceeCCCCCCCCcc-cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE--CCCCCCCeEEe
Q 032882 64 NSIICPDCDGNGAK-QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL--CGNCNGAGFMG 124 (131)
Q Consensus 64 r~v~C~~C~GsG~~-~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii--C~~C~G~G~v~ 124 (131)
..+.|..|. .. .|+.|...=.. ++. .....|..|+-...+. |+.|.+. .+.
T Consensus 434 ~~l~C~~Cg---~v~~Cp~Cd~~lt~---H~~---~~~L~CH~Cg~~~~~p~~Cp~Cgs~-~L~ 487 (730)
T COG1198 434 PLLLCRDCG---YIAECPNCDSPLTL---HKA---TGQLRCHYCGYQEPIPQSCPECGSE-HLR 487 (730)
T ss_pred ceeecccCC---CcccCCCCCcceEE---ecC---CCeeEeCCCCCCCCCCCCCCCCCCC-eeE
Confidence 478999993 44 89999985222 221 1236799998885555 9999987 443
No 81
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=72.51 E-value=1.8 Score=35.72 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceeCCCCCCCCcccCCCCCCCCEEEEEe
Q 032882 65 SIICPDCDGNGAKQCSQCKGNGINSVDH 92 (131)
Q Consensus 65 ~v~C~~C~GsG~~~C~~C~GsG~i~~~~ 92 (131)
...+..-.|.+..+|++|+|+|++-+.+
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCccc
Confidence 3445556677777999999999986654
No 82
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.25 E-value=3.4 Score=39.72 Aligned_cols=24 Identities=33% Similarity=0.797 Sum_probs=19.5
Q ss_pred eeCCCCCccceEE------------CCCCCCCeEEe
Q 032882 101 GLCWLCRGKREIL------------CGNCNGAGFMG 124 (131)
Q Consensus 101 ~~C~~C~G~G~ii------------C~~C~G~G~v~ 124 (131)
-.|+.|.|.|.+. |+.|+|+.+-.
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~ 772 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNR 772 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeCh
Confidence 5699999999875 99999987643
No 83
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=58.87 E-value=9.6 Score=25.17 Aligned_cols=19 Identities=26% Similarity=0.754 Sum_probs=10.5
Q ss_pred cceeCCCCCCC------Ccc-cCCCC
Q 032882 64 NSIICPDCDGN------GAK-QCSQC 82 (131)
Q Consensus 64 r~v~C~~C~Gs------G~~-~C~~C 82 (131)
....|.+|+.. +.+ .|+.|
T Consensus 6 ~~~~CtSCg~~i~~~~~~~~F~CPnC 31 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKAVKFLCPNC 31 (59)
T ss_pred cCccccCCCCcccCCCccCEeeCCCC
Confidence 34467777521 222 77777
No 84
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=57.66 E-value=6.2 Score=38.10 Aligned_cols=26 Identities=31% Similarity=0.709 Sum_probs=21.0
Q ss_pred eeCCCCCccceEE------------CCCCCCCeEEeEe
Q 032882 101 GLCWLCRGKREIL------------CGNCNGAGFMGGF 126 (131)
Q Consensus 101 ~~C~~C~G~G~ii------------C~~C~G~G~v~g~ 126 (131)
-.|+.|.|.|.+. |+.|+|+.+-.-.
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 776 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET 776 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCccccccc
Confidence 4699999999875 9999998776543
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.30 E-value=13 Score=33.12 Aligned_cols=50 Identities=18% Similarity=0.514 Sum_probs=32.9
Q ss_pred cceeCCCCCCCCcc-cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE--CCCCCCCeE
Q 032882 64 NSIICPDCDGNGAK-QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL--CGNCNGAGF 122 (131)
Q Consensus 64 r~v~C~~C~GsG~~-~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii--C~~C~G~G~ 122 (131)
..+.|..|. .. +|+.|++.=..... .....|+.|+-+-.+. |+.|.+...
T Consensus 212 ~~~~C~~Cg---~~~~C~~C~~~l~~h~~------~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l 264 (505)
T TIGR00595 212 KNLLCRSCG---YILCCPNCDVSLTYHKK------EGKLRCHYCGYQEPIPKTCPQCGSEDL 264 (505)
T ss_pred CeeEhhhCc---CccCCCCCCCceEEecC------CCeEEcCCCcCcCCCCCCCCCCCCCee
Confidence 456899994 34 89999874322221 1126799997665554 999988643
No 86
>PF14353 CpXC: CpXC protein
Probab=54.18 E-value=16 Score=26.14 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=20.5
Q ss_pred cCCCCCCCCEEEEEeec--------------ceEEcceeCCCCCccceE
Q 032882 78 QCSQCKGNGINSVDHFN--------------GQFKAGGLCWLCRGKREI 112 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~--------------g~~q~~~~C~~C~G~G~i 112 (131)
+|+.|+-.........+ +.+ ...+||.|+....+
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l-~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSL-FSFTCPSCGHKFRL 50 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCc-CEEECCCCCCceec
Confidence 57788887776555432 221 12778888766543
No 87
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=51.54 E-value=8.7 Score=39.71 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=5.5
Q ss_pred eCCCCCccceE
Q 032882 102 LCWLCRGKREI 112 (131)
Q Consensus 102 ~C~~C~G~G~i 112 (131)
.|+.|.|.|.+
T Consensus 1609 rC~~C~G~G~i 1619 (1809)
T PRK00635 1609 QCSDCWGLGYQ 1619 (1809)
T ss_pred CCCCCccCceE
Confidence 35555555544
No 88
>PRK05580 primosome assembly protein PriA; Validated
Probab=51.38 E-value=20 Score=33.09 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=32.2
Q ss_pred ceeCCCCCCCCcccCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE--CCCCCCCe
Q 032882 65 SIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL--CGNCNGAG 121 (131)
Q Consensus 65 ~v~C~~C~GsG~~~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii--C~~C~G~G 121 (131)
.+.|..|.-.- +|+.|.+.=.... . .....|+.|+-+-... |+.|.+.-
T Consensus 381 ~~~C~~Cg~~~--~C~~C~~~l~~h~--~----~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 381 FLLCRDCGWVA--ECPHCDASLTLHR--F----QRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred ceEhhhCcCcc--CCCCCCCceeEEC--C----CCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 68899995321 8999998322111 1 1226799997765544 99998764
No 89
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=48.03 E-value=7.7 Score=27.42 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=18.8
Q ss_pred cCCCCCCCCEEEEEeec--c-eEEcceeCCCCCccce
Q 032882 78 QCSQCKGNGINSVDHFN--G-QFKAGGLCWLCRGKRE 111 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~--g-~~q~~~~C~~C~G~G~ 111 (131)
.|..|+|.|...-..+. + -+..-..|.+|.|+|.
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~ 43 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGY 43 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCC
Confidence 57788888853322111 1 2222367777777774
No 90
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=45.06 E-value=35 Score=19.99 Aligned_cols=8 Identities=38% Similarity=0.974 Sum_probs=5.0
Q ss_pred eeCCCCCc
Q 032882 101 GLCWLCRG 108 (131)
Q Consensus 101 ~~C~~C~G 108 (131)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 55666665
No 91
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=43.94 E-value=9.5 Score=31.47 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=11.0
Q ss_pred eCCCCCccceEECCCCCCCeEEe
Q 032882 102 LCWLCRGKREILCGNCNGAGFMG 124 (131)
Q Consensus 102 ~C~~C~G~G~iiC~~C~G~G~v~ 124 (131)
++-+-.|++.+.|+.|+|.|++.
T Consensus 29 py~e~~g~~~vtCPTCqGtGrIP 51 (238)
T PF07092_consen 29 PYVEFTGRDSVTCPTCQGTGRIP 51 (238)
T ss_pred ccccccCCCCCcCCCCcCCccCC
Confidence 34444444444455555555544
No 92
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=43.80 E-value=48 Score=19.60 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=16.5
Q ss_pred cCCCCCCCCEEEEEeec----ceEEcceeCCCCC
Q 032882 78 QCSQCKGNGINSVDHFN----GQFKAGGLCWLCR 107 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~----g~~q~~~~C~~C~ 107 (131)
.|+.|+....+....|+ ..+..-..|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 58888777776655443 1112125566664
No 93
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=43.38 E-value=13 Score=31.05 Aligned_cols=44 Identities=27% Similarity=0.640 Sum_probs=33.1
Q ss_pred eeeecceeCCCCCCCCcc-----------cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE
Q 032882 60 STKTNSIICPDCDGNGAK-----------QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL 113 (131)
Q Consensus 60 ~~~~r~v~C~~C~GsG~~-----------~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii 113 (131)
........|..|.|+|.. +|..|+|.|.+.. ..|..|.|.|++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~----------~~c~~~~g~~~v~ 230 (288)
T KOG0715|consen 176 EEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR----------DNCQACSGAGQVR 230 (288)
T ss_pred ccccccccchhhhCcccccccccCCcceeecccccccceecc----------chHHHhhcchhhh
Confidence 344678899999999932 4999999988644 3399999998553
No 94
>PRK14873 primosome assembly protein PriA; Provisional
Probab=40.68 E-value=30 Score=32.21 Aligned_cols=48 Identities=23% Similarity=0.536 Sum_probs=31.9
Q ss_pred cceeCCCCCCCCcc-cCCCCCCCCEEEEEeecceEEcceeCCCCCccceEE--CCCCCCCe
Q 032882 64 NSIICPDCDGNGAK-QCSQCKGNGINSVDHFNGQFKAGGLCWLCRGKREIL--CGNCNGAG 121 (131)
Q Consensus 64 r~v~C~~C~GsG~~-~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G~G~ii--C~~C~G~G 121 (131)
..+.|..|. .. +|+.|++.=...... + .-.|..|+-.- .. |+.|.+.-
T Consensus 382 p~l~C~~Cg---~~~~C~~C~~~L~~h~~~--~----~l~Ch~CG~~~-~p~~Cp~Cgs~~ 432 (665)
T PRK14873 382 PSLACARCR---TPARCRHCTGPLGLPSAG--G----TPRCRWCGRAA-PDWRCPRCGSDR 432 (665)
T ss_pred CeeEhhhCc---CeeECCCCCCceeEecCC--C----eeECCCCcCCC-cCccCCCCcCCc
Confidence 567899993 44 999999854332211 1 26699997643 22 99998864
No 95
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=40.11 E-value=18 Score=21.84 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=4.4
Q ss_pred cCCCCCCCCEE
Q 032882 78 QCSQCKGNGIN 88 (131)
Q Consensus 78 ~C~~C~GsG~i 88 (131)
.|+.|.|+..-
T Consensus 5 pCP~CGG~DrF 15 (40)
T PF08273_consen 5 PCPICGGKDRF 15 (40)
T ss_dssp --TTTT-TTTE
T ss_pred CCCCCcCcccc
Confidence 45556565543
No 96
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=37.68 E-value=20 Score=34.76 Aligned_cols=22 Identities=36% Similarity=0.924 Sum_probs=13.8
Q ss_pred eeCCCCCccceEE------------CCCCCCCeE
Q 032882 101 GLCWLCRGKREIL------------CGNCNGAGF 122 (131)
Q Consensus 101 ~~C~~C~G~G~ii------------C~~C~G~G~ 122 (131)
-+|..|+|.|.+. |..|+|+.|
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 4566666666653 666666654
No 97
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=37.24 E-value=56 Score=19.16 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=14.9
Q ss_pred cCCCCCCCCEEEEEeec----ceEEcceeCCCCC
Q 032882 78 QCSQCKGNGINSVDHFN----GQFKAGGLCWLCR 107 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~----g~~q~~~~C~~C~ 107 (131)
+|+.|+.........|. ..+..-..|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 58888888876665443 1111125566664
No 98
>PRK04023 DNA polymerase II large subunit; Validated
Probab=35.88 E-value=29 Score=34.40 Aligned_cols=95 Identities=22% Similarity=0.336 Sum_probs=49.8
Q ss_pred CCCCCCcee---ecCcceeee-eeecceeecCccc-eeeeeEEeeecCccceee-ecceeCCCCCCCCcc-cCCCCCCCC
Q 032882 14 KSSNRPGIA---IESSVARKV-SRVNEVFHSSKTV-KIRSLKVKATDSNQSSTK-TNSIICPDCDGNGAK-QCSQCKGNG 86 (131)
Q Consensus 14 ~~~~~~~~~---~~~~~~~~~-~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~-~r~v~C~~C~GsG~~-~C~~C~GsG 86 (131)
|.+-+.|.. -+.+..+++ =+.|-+|-.+... ....| .+|++....+.+ .-...|++|.-.+.. .|+.|...=
T Consensus 570 ra~trIG~RmGRPEKa~~RkMkP~~h~LFPiG~~GG~~R~i-~~A~~~~g~~eVEVg~RfCpsCG~~t~~frCP~CG~~T 648 (1121)
T PRK04023 570 KAPTRIGARMGRPEKAKERKMKPPVHVLFPIGNAGGSTRDI-NKAAKYKGTIEVEIGRRKCPSCGKETFYRRCPFCGTHT 648 (1121)
T ss_pred cCCceeecccCCCcccccccCCCCCcccccccccCcccccH-HHHHhcCCceeecccCccCCCCCCcCCcccCCCCCCCC
Confidence 445555554 233444443 3445556555553 22222 223321111333 245689999766544 999998861
Q ss_pred EEEEEeecceEEcceeCCCCCccceEE-CCCCCCC
Q 032882 87 INSVDHFNGQFKAGGLCWLCRGKREIL-CGNCNGA 120 (131)
Q Consensus 87 ~i~~~~~~g~~q~~~~C~~C~G~G~ii-C~~C~G~ 120 (131)
. ....|+.|+-..... |++|.-.
T Consensus 649 ---e--------~i~fCP~CG~~~~~y~CPKCG~E 672 (1121)
T PRK04023 649 ---E--------PVYRCPRCGIEVEEDECEKCGRE 672 (1121)
T ss_pred ---C--------cceeCccccCcCCCCcCCCCCCC
Confidence 1 115688886555433 8888653
No 99
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=34.65 E-value=17 Score=18.12 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=5.9
Q ss_pred eCCCCCccceEE
Q 032882 102 LCWLCRGKREIL 113 (131)
Q Consensus 102 ~C~~C~G~G~ii 113 (131)
.|..|+..|.+.
T Consensus 2 ~C~~C~~~GH~~ 13 (18)
T PF00098_consen 2 KCFNCGEPGHIA 13 (18)
T ss_dssp BCTTTSCSSSCG
T ss_pred cCcCCCCcCccc
Confidence 355555555443
No 100
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=33.11 E-value=48 Score=18.76 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=3.4
Q ss_pred eeCCCCC
Q 032882 101 GLCWLCR 107 (131)
Q Consensus 101 ~~C~~C~ 107 (131)
..|+.|+
T Consensus 26 v~C~~C~ 32 (38)
T TIGR02098 26 VRCGKCG 32 (38)
T ss_pred EECCCCC
Confidence 4455553
No 101
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=32.97 E-value=63 Score=20.02 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=15.6
Q ss_pred cCCCCCCCCEEEEEeecce-----EEcceeCCCCCc
Q 032882 78 QCSQCKGNGINSVDHFNGQ-----FKAGGLCWLCRG 108 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~g~-----~q~~~~C~~C~G 108 (131)
.|+.| |...+........ +. ..|..|+.
T Consensus 5 PCPFC-G~~~~~~~~~~~~~~~~~~~--V~C~~Cga 37 (61)
T PF14354_consen 5 PCPFC-GSADVLIRQDEGFDYGMYYY--VECTDCGA 37 (61)
T ss_pred CCCCC-CCcceEeecccCCCCCCEEE--EEcCCCCC
Confidence 68888 7666655443211 33 55666643
No 102
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.62 E-value=18 Score=28.50 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=24.8
Q ss_pred ccccccccCCCCCCcee------ecCcceeee-eeecceeecC
Q 032882 6 CFAPVSSLKSSNRPGIA------IESSVARKV-SRVNEVFHSS 41 (131)
Q Consensus 6 ~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~f~~~ 41 (131)
.|+|.|| ++|-||.+ +-++|-+.. +++||.|-+.
T Consensus 54 AFtPtCs--~~HvPGyi~~a~elksKGVd~iicvSVnDpFv~~ 94 (171)
T KOG0541|consen 54 AFTPTCS--SSHVPGYIEKADELKSKGVDEIICVSVNDPFVMK 94 (171)
T ss_pred ccCCccc--cccCchHHHHHHHHHhcCCcEEEEEecCcHHHHH
Confidence 5899998 57999975 335565555 8899888654
No 103
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=31.11 E-value=47 Score=19.24 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=2.7
Q ss_pred eeCCCC
Q 032882 101 GLCWLC 106 (131)
Q Consensus 101 ~~C~~C 106 (131)
..|+.|
T Consensus 26 v~C~~C 31 (36)
T PF13717_consen 26 VRCSKC 31 (36)
T ss_pred EECCCC
Confidence 344444
No 104
>PRK05978 hypothetical protein; Provisional
Probab=31.04 E-value=24 Score=27.00 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=12.5
Q ss_pred cCCCCCCCCEEEEEeecceEEcceeCCCCC
Q 032882 78 QCSQCKGNGINSVDHFNGQFKAGGLCWLCR 107 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~ 107 (131)
+|++| |.|.... .+-.+. ..|+.|+
T Consensus 35 rCP~C-G~G~LF~--g~Lkv~--~~C~~CG 59 (148)
T PRK05978 35 RCPAC-GEGKLFR--AFLKPV--DHCAACG 59 (148)
T ss_pred cCCCC-CCCcccc--cccccC--CCccccC
Confidence 56666 3455432 112223 6777774
No 105
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=30.57 E-value=56 Score=18.78 Aligned_cols=12 Identities=58% Similarity=1.298 Sum_probs=7.7
Q ss_pred cCCCCCCCCEEE
Q 032882 78 QCSQCKGNGINS 89 (131)
Q Consensus 78 ~C~~C~GsG~i~ 89 (131)
.|..|++.|.+.
T Consensus 5 ~C~~C~~~~i~~ 16 (33)
T PF08792_consen 5 KCSKCGGNGIVN 16 (33)
T ss_pred EcCCCCCCeEEE
Confidence 566677777553
No 106
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=30.35 E-value=70 Score=19.74 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=9.2
Q ss_pred cCCCCCCCCEEEE
Q 032882 78 QCSQCKGNGINSV 90 (131)
Q Consensus 78 ~C~~C~GsG~i~~ 90 (131)
.|+.|.|......
T Consensus 3 PCPfCGg~~~~~~ 15 (53)
T TIGR03655 3 PCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCcceeeE
Confidence 5888888777433
No 107
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=29.99 E-value=26 Score=26.65 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=6.6
Q ss_pred CCCcccCCCCCC
Q 032882 73 GNGAKQCSQCKG 84 (131)
Q Consensus 73 GsG~~~C~~C~G 84 (131)
|.|...|..|+-
T Consensus 109 g~G~l~C~~Cg~ 120 (146)
T PF07295_consen 109 GPGTLVCENCGH 120 (146)
T ss_pred cCceEecccCCC
Confidence 445556666643
No 108
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=29.87 E-value=36 Score=19.75 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=3.1
Q ss_pred eeCCCC
Q 032882 101 GLCWLC 106 (131)
Q Consensus 101 ~~C~~C 106 (131)
..|+.|
T Consensus 26 vrC~~C 31 (37)
T PF13719_consen 26 VRCPKC 31 (37)
T ss_pred EECCCC
Confidence 445555
No 109
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=24 Score=27.63 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=28.5
Q ss_pred ccccccccCCCCCCcee------ecCcceeee-eeecceeecCccceeee
Q 032882 6 CFAPVSSLKSSNRPGIA------IESSVARKV-SRVNEVFHSSKTVKIRS 48 (131)
Q Consensus 6 ~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~f~~~~~~~~~~ 48 (131)
.|+|-|| ++|-||.. ...+|-+-. +++||.|-..-=.+.+.
T Consensus 48 AFTPTCS--~~hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g 95 (165)
T COG0678 48 AFTPTCS--SSHLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQG 95 (165)
T ss_pred ccCCCcc--cccCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcC
Confidence 5899998 46889964 456666654 89999887654444444
No 110
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=27.39 E-value=40 Score=29.07 Aligned_cols=41 Identities=29% Similarity=0.586 Sum_probs=27.9
Q ss_pred eeEEeeecCcccee---eecceeCCCCCCCCcccCCCCCCCCEEEEE
Q 032882 48 SLKVKATDSNQSST---KTNSIICPDCDGNGAKQCSQCKGNGINSVD 91 (131)
Q Consensus 48 ~~~~~~~~~~~~~~---~~r~v~C~~C~GsG~~~C~~C~GsG~i~~~ 91 (131)
.+++++..+.-..| .+-.+.|..|.|.| |..|+++|++..-
T Consensus 240 ~~~~R~rpsyFPFTePS~Evdv~~~~~~g~g---c~~ck~~~WiEil 283 (339)
T PRK00488 240 DVKIRFRPSYFPFTEPSAEVDVSCFKCGGKG---CRVCKGTGWLEIL 283 (339)
T ss_pred CCeEEecCCCCCCCCCceEEEEEEeccCCCc---ccccCCCCceEEe
Confidence 36666665544322 24557788899877 8899999987543
No 111
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=26.44 E-value=22 Score=27.97 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=27.3
Q ss_pred ecceeCCCCCCCCcccCCCCCCCCEEEEEeecceEEcceeCCCCCc
Q 032882 63 TNSIICPDCDGNGAKQCSQCKGNGINSVDHFNGQFKAGGLCWLCRG 108 (131)
Q Consensus 63 ~r~v~C~~C~GsG~~~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~G 108 (131)
.....|+.|.+.| ..|.-|+....+.-. +......|+.|+.
T Consensus 140 ~HV~~C~lC~~kG-fiCe~C~~~~~IfPF----~~~~~~~C~~C~~ 180 (202)
T PF13901_consen 140 KHVYSCELCQQKG-FICEICNSDDIIFPF----QIDTTVRCPKCKS 180 (202)
T ss_pred HHHHHhHHHHhCC-CCCccCCCCCCCCCC----CCCCeeeCCcCcc
Confidence 3445899999998 489999888554322 2233467887754
No 112
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=25.71 E-value=33 Score=27.48 Aligned_cols=26 Identities=31% Similarity=0.834 Sum_probs=18.1
Q ss_pred ecceeCCCCCCCCcc--cCCCCCCCCEE
Q 032882 63 TNSIICPDCDGNGAK--QCSQCKGNGIN 88 (131)
Q Consensus 63 ~r~v~C~~C~GsG~~--~C~~C~GsG~i 88 (131)
+.-++|..|.+.-++ +||.|...|..
T Consensus 160 ~hcilCtvCe~r~w~g~~CPKCGr~G~p 187 (200)
T PF12387_consen 160 KHCILCTVCEGREWKGGNCPKCGRHGKP 187 (200)
T ss_pred CceEEEeeeecCccCCCCCCcccCCCCC
Confidence 455678888776665 77777777754
No 113
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=25.62 E-value=37 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=19.8
Q ss_pred cCCCCCCCCEEEEEeec------ceEEcceeCCCCC
Q 032882 78 QCSQCKGNGINSVDHFN------GQFKAGGLCWLCR 107 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~------g~~q~~~~C~~C~ 107 (131)
+|+.|+-.++.+.+.|+ +.+- .+|+.|.
T Consensus 76 kCpkCghe~m~Y~T~QlRSADEGQTVF--YTC~kC~ 109 (116)
T KOG2907|consen 76 KCPKCGHEEMSYHTLQLRSADEGQTVF--YTCPKCK 109 (116)
T ss_pred cCcccCCchhhhhhhhcccccCCceEE--EEcCccc
Confidence 89999988887776665 2333 6777774
No 114
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=24.77 E-value=57 Score=19.35 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=4.9
Q ss_pred cCCCCCCCCE
Q 032882 78 QCSQCKGNGI 87 (131)
Q Consensus 78 ~C~~C~GsG~ 87 (131)
.|+.|.|+..
T Consensus 5 pCP~CGG~Dr 14 (37)
T smart00778 5 PCPNCGGSDR 14 (37)
T ss_pred CCCCCCCccc
Confidence 3555555444
No 115
>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins. At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.
Probab=24.15 E-value=22 Score=25.99 Aligned_cols=17 Identities=35% Similarity=1.101 Sum_probs=9.2
Q ss_pred cceeCCCCCCCCcccCCCCCC
Q 032882 64 NSIICPDCDGNGAKQCSQCKG 84 (131)
Q Consensus 64 r~v~C~~C~GsG~~~C~~C~G 84 (131)
--.+|+.|+| +|+-|+.
T Consensus 19 iG~lC~kCdG----kCpiCDS 35 (106)
T PF03660_consen 19 IGRLCEKCDG----KCPICDS 35 (106)
T ss_dssp E-EE-GGGTT------TTT--
T ss_pred hhhhhhhcCC----cccccCC
Confidence 3467999998 7999984
No 116
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=24.08 E-value=1.3e+02 Score=23.10 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=18.9
Q ss_pred cCCCCCCCCEEEEEe-e---cce-EEcceeCCCCCccce
Q 032882 78 QCSQCKGNGINSVDH-F---NGQ-FKAGGLCWLCRGKRE 111 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~-~---~g~-~q~~~~C~~C~G~G~ 111 (131)
.|+.|+..|...... . ++. +.....|++|+=+-.
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 40 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNN 40 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccc
Confidence 478888888643322 1 221 222377998865533
No 117
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=23.53 E-value=23 Score=25.72 Aligned_cols=19 Identities=32% Similarity=0.885 Sum_probs=13.6
Q ss_pred ceeCCCCCCCCcccCCCCCCCCE
Q 032882 65 SIICPDCDGNGAKQCSQCKGNGI 87 (131)
Q Consensus 65 ~v~C~~C~GsG~~~C~~C~GsG~ 87 (131)
-..|+.|+| +|+-|...=+
T Consensus 20 G~LCEkCDg----kC~ICDS~VR 38 (110)
T KOG1705|consen 20 GRLCEKCDG----KCVICDSYVR 38 (110)
T ss_pred hhhHHhcCC----cccccccccc
Confidence 457888887 6888877433
No 118
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=23.52 E-value=43 Score=29.41 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=8.0
Q ss_pred eeCCCCCccceE
Q 032882 101 GLCWLCRGKREI 112 (131)
Q Consensus 101 ~~C~~C~G~G~i 112 (131)
.+||.|+|+|.+
T Consensus 391 ~~Cp~C~G~G~v 402 (414)
T TIGR00757 391 TVCPHCSGTGIV 402 (414)
T ss_pred CCCCCCcCeeEE
Confidence 567777766665
No 119
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=23.17 E-value=36 Score=27.59 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=6.4
Q ss_pred cceeCCCCCC
Q 032882 64 NSIICPDCDG 73 (131)
Q Consensus 64 r~v~C~~C~G 73 (131)
-...|++|+-
T Consensus 216 v~~lCp~C~~ 225 (264)
T cd01129 216 VRKLCPHCKE 225 (264)
T ss_pred ecccChhhCC
Confidence 3567777753
No 120
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.37 E-value=78 Score=22.57 Aligned_cols=29 Identities=17% Similarity=0.495 Sum_probs=17.0
Q ss_pred eeeecceeCCCCCCCCcc-----cCCCCCCCCEE
Q 032882 60 STKTNSIICPDCDGNGAK-----QCSQCKGNGIN 88 (131)
Q Consensus 60 ~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~i 88 (131)
...+-...|..|.-.... .||.|++....
T Consensus 65 e~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (113)
T PF01155_consen 65 EEVPARARCRDCGHEFEPDEFDFSCPRCGSPDVE 98 (113)
T ss_dssp EEE--EEEETTTS-EEECHHCCHH-SSSSSS-EE
T ss_pred EecCCcEECCCCCCEEecCCCCCCCcCCcCCCcE
Confidence 445677888888766554 78888887653
No 121
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=22.20 E-value=1.3e+02 Score=22.96 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=16.4
Q ss_pred cCCCCCCCCEEEEEe-e---cce-EEcceeCCCCCccce
Q 032882 78 QCSQCKGNGINSVDH-F---NGQ-FKAGGLCWLCRGKRE 111 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~-~---~g~-~q~~~~C~~C~G~G~ 111 (131)
.|+.|+..|...... . ++. +.....|++|+=+-.
T Consensus 3 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 41 (161)
T PF03367_consen 3 LCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNN 41 (161)
T ss_dssp E-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEE
T ss_pred cCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEee
Confidence 588888888753321 1 221 222367888865433
No 122
>PRK00420 hypothetical protein; Validated
Probab=22.16 E-value=60 Score=23.78 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=4.5
Q ss_pred ceEECCCCC
Q 032882 110 REILCGNCN 118 (131)
Q Consensus 110 G~iiC~~C~ 118 (131)
|+.+|+.|.
T Consensus 39 g~~~Cp~Cg 47 (112)
T PRK00420 39 GEVVCPVHG 47 (112)
T ss_pred CceECCCCC
Confidence 444455554
No 123
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=21.04 E-value=62 Score=21.64 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=12.2
Q ss_pred cCCCCCCCCEEEEEeec---ceEEcceeCCCCC
Q 032882 78 QCSQCKGNGINSVDHFN---GQFKAGGLCWLCR 107 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~---g~~q~~~~C~~C~ 107 (131)
+|..|+.+-......+. +.+. ..||.|.
T Consensus 6 TC~~C~~Rs~~~~sk~aY~~GvVi--v~C~gC~ 36 (66)
T PF05180_consen 6 TCNKCGTRSAKMFSKQAYHKGVVI--VQCPGCK 36 (66)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEE--EE-TTS-
T ss_pred EcCCCCCccceeeCHHHHhCCeEE--EECCCCc
Confidence 45666554443333321 4444 5566554
No 124
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=20.86 E-value=78 Score=22.70 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=15.0
Q ss_pred eeeecceeCCCCCCCCcc-----cCCCCCCCCE
Q 032882 60 STKTNSIICPDCDGNGAK-----QCSQCKGNGI 87 (131)
Q Consensus 60 ~~~~r~v~C~~C~GsG~~-----~C~~C~GsG~ 87 (131)
..++-...|..|...... .||.|.+...
T Consensus 65 ~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 65 VYKPAQAWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EeeCcEEEcccCCCEEecCCcCccCcCCCCCCc
Confidence 334566677777543322 4666665443
No 125
>PRK11032 hypothetical protein; Provisional
Probab=20.65 E-value=51 Score=25.58 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=4.4
Q ss_pred CCcccCCCCC
Q 032882 74 NGAKQCSQCK 83 (131)
Q Consensus 74 sG~~~C~~C~ 83 (131)
.|...|..|+
T Consensus 122 ~G~LvC~~Cg 131 (160)
T PRK11032 122 LGNLVCEKCH 131 (160)
T ss_pred cceEEecCCC
Confidence 3334455553
No 126
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=20.62 E-value=84 Score=28.39 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=35.9
Q ss_pred cccccccCCCCCCceeecCcceeeeeeecceeecCcc-ceeeeeEEeeecCccc-eeeecceeCCCCCCC
Q 032882 7 FAPVSSLKSSNRPGIAIESSVARKVSRVNEVFHSSKT-VKIRSLKVKATDSNQS-STKTNSIICPDCDGN 74 (131)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~-~~~~r~v~C~~C~Gs 74 (131)
|||.||.=+-+.- -.-|..-...++.|.+-||-.=- -+-.++.++.-+..|+ .-++....|..|++.
T Consensus 393 fAPrCs~C~~PI~-P~~G~~etvRvvamdr~fHv~CY~CEDCg~~LS~e~e~qgCyPld~HllCk~Ch~~ 461 (468)
T KOG1701|consen 393 FAPRCSVCGNPIL-PRDGKDETVRVVAMDRDFHVNCYKCEDCGLLLSSEEEGQGCYPLDGHLLCKTCHLK 461 (468)
T ss_pred cCcchhhccCCcc-CCCCCcceEEEEEccccccccceehhhcCccccccCCCCcceeccCceeechhhhh
Confidence 6777776554311 01234444556677765663211 1224466666666665 555666777666653
No 127
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=20.40 E-value=1.8e+02 Score=19.50 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=17.3
Q ss_pred cCCCCCCCCEEEEEeecceEEcceeCCCCC
Q 032882 78 QCSQCKGNGINSVDHFNGQFKAGGLCWLCR 107 (131)
Q Consensus 78 ~C~~C~GsG~i~~~~~~g~~q~~~~C~~C~ 107 (131)
.||.|+..-.+......+.-. ..|-.|+
T Consensus 10 ~CP~C~~~D~i~~~~e~~ve~--vECV~CG 37 (71)
T PF09526_consen 10 VCPKCQAMDTIMMWRENGVEY--VECVECG 37 (71)
T ss_pred cCCCCcCccEEEEEEeCCceE--EEecCCC
Confidence 677777777766655444333 5666663
No 128
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.31 E-value=1.3e+02 Score=24.59 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=6.3
Q ss_pred CCCcccCCCCC
Q 032882 73 GNGAKQCSQCK 83 (131)
Q Consensus 73 GsG~~~C~~C~ 83 (131)
|...+.|+.|.
T Consensus 241 ~R~g~pCprCG 251 (272)
T PRK14810 241 QRTGEPCLNCK 251 (272)
T ss_pred CCCCCcCCCCC
Confidence 33344777775
Done!