BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032883
MLSSMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESLT
AEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAIL
LLSWMKIPVSL

High Scoring Gene Products

Symbol, full name Information P value
PSRP3/2
AT5G15760 		protein from Arabidopsis thaliana 1.2e-14
PSRP3/1
AT1G68590 		protein from Arabidopsis thaliana 5.0e-12

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032883
        (131 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2143211 - symbol:PSRP3/2 "plastid-specifi...   133  1.2e-14   2
TAIR|locus:2026940 - symbol:PSRP3/1 "plastid-specifi...   162  5.0e-12   1


>TAIR|locus:2143211 [details] [associations]
            symbol:PSRP3/2 "plastid-specific ribosomal protein
            3/2" species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
            constituent of ribosome" evidence=IEA;ISS] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009536 "plastid" evidence=IEA]
            InterPro:IPR006924 Pfam:PF04839 ProDom:PD015453 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 EMBL:AL391144 eggNOG:NOG28579 HOGENOM:HOG000240847
            ProtClustDB:CLSN2687486 EMBL:AK117858 EMBL:BT003711 IPI:IPI00538512
            PIR:T51405 RefSeq:NP_197080.1 UniGene:At.66680
            ProteinModelPortal:Q9LFV0 SMR:Q9LFV0 STRING:Q9LFV0 PaxDb:Q9LFV0
            PRIDE:Q9LFV0 EnsemblPlants:AT5G15760.1 GeneID:831432
            KEGG:ath:AT5G15760 TAIR:At5g15760 InParanoid:Q9LFV0 OMA:WISELHR
            PhylomeDB:Q9LFV0 Genevestigator:Q9LFV0 GermOnline:AT5G15760
            Uniprot:Q9LFV0
        Length = 183

 Score = 133 (51.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query:    76 PVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
             P+  KK  V VK LEKP++VLKF+WM+K+IG+ALD  IPG
Sbjct:    86 PLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPG 125

 Score = 67 (28.6 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query:     5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISR 46
             MA+Q+  + +F  R++ PSQKL+ KP     L   + KP SR
Sbjct:     1 MAVQANQSASFGFRTASPSQKLSSKPIAHISL-STKLKPSSR 41


>TAIR|locus:2026940 [details] [associations]
            symbol:PSRP3/1 "plastid-specific ribosomal protein
            3/1" species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
            constituent of ribosome" evidence=IEA;ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0032544 "plastid
            translation" evidence=IMP] [GO:0010103 "stomatal complex
            morphogenesis" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
            biosynthetic process, mevalonate-independent pathway" evidence=RCA]
            InterPro:IPR006924 Pfam:PF04839 ProDom:PD015453 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0005840 GO:GO:0003735
            EMBL:AC008075 GO:GO:0009535 UniGene:At.35504 GO:GO:0032544
            EMBL:BT003990 EMBL:BT005090 EMBL:AY086145 IPI:IPI00543358
            PIR:C96710 RefSeq:NP_564934.1 UniGene:At.71121
            ProteinModelPortal:Q9SX22 SMR:Q9SX22 IntAct:Q9SX22 STRING:Q9SX22
            PaxDb:Q9SX22 PRIDE:Q9SX22 ProMEX:Q9SX22 EnsemblPlants:AT1G68590.1
            GeneID:843189 KEGG:ath:AT1G68590 TAIR:At1g68590 eggNOG:NOG28579
            HOGENOM:HOG000240847 InParanoid:Q9SX22 OMA:LEAKPWI PhylomeDB:Q9SX22
            ProtClustDB:CLSN2687486 Genevestigator:Q9SX22 GermOnline:AT1G68590
            Uniprot:Q9SX22
        Length = 166

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 44/116 (37%), Positives = 57/116 (49%)

Query:     1 MLSSMALQST-VNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVXXXXXXXX 59
             M+SSMAL ST +  +F   S  P   +T  P    + H   TKPIS  ++++        
Sbjct:     1 MMSSMALSSTSLCSSFI--SQHPKLSITASPP---LFHTQTTKPISVKRKIITLAAPETL 55

Query:    60 XXXXXXXXXXXXXXXXPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
                             P +T K    VK  EK R+VLKF+WMEKNIGL LDQ +PG
Sbjct:    56 TAETVTGIDTSDNT--PQQTIKV---VKPDEKSRVVLKFVWMEKNIGLGLDQHVPG 106


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.129   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      131       107   0.00091  102 3  11 22  0.42    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  509 (54 KB)
  Total size of DFA:  101 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.61u 0.12s 8.73t   Elapsed:  00:00:00
  Total cpu time:  8.61u 0.12s 8.73t   Elapsed:  00:00:00
  Start:  Fri May 10 06:55:38 2013   End:  Fri May 10 06:55:38 2013

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