BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032883
(131 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255576477|ref|XP_002529130.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
gi|223531409|gb|EEF33243.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
Length = 180
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 77/130 (59%), Gaps = 16/130 (12%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILH-------------QNRTKPISRNQRLV 51
MA+QS V+ + T S P + K KT+I + +PISRN+RL
Sbjct: 1 MAIQSGVS-SILTYSPVPHRTPFCKSIKTSIFANPKISLLYSSTILDPKMRPISRNERLT 59
Query: 52 ALATPESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQ 111
A+PE+LT E+ T+ + E I +E K V+VKQ+EKPRLVLKFIWMEKNIGLALDQ
Sbjct: 60 TFASPEALTVEDKTSETEEPISDDIIE--KVEVAVKQVEKPRLVLKFIWMEKNIGLALDQ 117
Query: 112 SIPGAVAILL 121
IPG I L
Sbjct: 118 VIPGHGTIPL 127
>gi|224099355|ref|XP_002311451.1| predicted protein [Populus trichocarpa]
gi|222851271|gb|EEE88818.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 78/142 (54%), Gaps = 19/142 (13%)
Query: 4 SMALQSTVNGAFTTRS------SFPSQKLTV------KPTKTTILHQNRTKPISRNQRLV 51
SMA QS VN FT S S + K T+ P +++ + +SRNQR
Sbjct: 3 SMAFQSGVNNVFTYYSLPCRTPSCKTFKATISVNPKPNPIRSSTFFDRERRHVSRNQRYT 62
Query: 52 ALATPESLTAE-----EATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIG 106
A PE+L AE + + E+IP ET+KA + VKQ+EKPRLVLKF+WMEKNIG
Sbjct: 63 TFAVPEALAAETPADAPPSNAAGESIPIQ--ETEKAELVVKQVEKPRLVLKFVWMEKNIG 120
Query: 107 LALDQSIPGAVAILLLSWMKIP 128
LALDQ IPG + L + P
Sbjct: 121 LALDQVIPGHGTVPLSPYFFWP 142
>gi|224111708|ref|XP_002315948.1| predicted protein [Populus trichocarpa]
gi|222864988|gb|EEF02119.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 79/141 (56%), Gaps = 17/141 (12%)
Query: 4 SMALQSTVNGAFTTRSSFPSQKLTVKPTKTT--------ILH-----QNRTKPISRNQRL 50
S+A Q + FT SS P Q + K K T ++H + K +SRNQR
Sbjct: 3 SVAFQCGFSNVFTN-SSLPCQTPSCKTFKATFSTNPKPNLIHSSTFLDRKRKRVSRNQRY 61
Query: 51 VALATPESLTAEEATTT--STETIPATPVE-TKKAGVSVKQLEKPRLVLKFIWMEKNIGL 107
A PE+LT E T STET + P + T+KA V VKQ+EKPRLVLKFIWMEKNIGL
Sbjct: 62 TTFAAPEALTVETPIDTPPSTETEESIPAQGTEKAEVLVKQVEKPRLVLKFIWMEKNIGL 121
Query: 108 ALDQSIPGAVAILLLSWMKIP 128
ALDQ IPG + L + P
Sbjct: 122 ALDQVIPGHGTVPLSPYFFWP 142
>gi|21554275|gb|AAM63350.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis
thaliana]
Length = 166
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 73/122 (59%), Gaps = 11/122 (9%)
Query: 1 MLSSMALQST-VNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESL 59
M+SSMAL ST + +F S P +T P + H TKPIS ++++ LA PE+L
Sbjct: 1 MMSSMALSSTSLCSSFI--SQHPKLSITASPP---LFHTQTTKPISVKRKIITLAAPETL 55
Query: 60 TAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAI 119
TAE T T +T TP +T K VK EK R+VLKF+WMEKNIGL LDQ +PG I
Sbjct: 56 TAE--TVTGIDTSDNTPQQTTKV---VKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTI 110
Query: 120 LL 121
L
Sbjct: 111 PL 112
>gi|18409071|ref|NP_564934.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
gi|28380141|sp|Q9SX22.1|RRP31_ARATH RecName: Full=30S ribosomal protein 3-1, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3-1;
Short=PSRP-3 1; Flags: Precursor
gi|5734719|gb|AAD49984.1|AC008075_17 ESTs gb|H37416, gb|T21163, gb|T76138 and gb|AA651329 come from this
gene [Arabidopsis thaliana]
gi|28393198|gb|AAO42029.1| unknown protein [Arabidopsis thaliana]
gi|28827558|gb|AAO50623.1| unknown protein [Arabidopsis thaliana]
gi|332196695|gb|AEE34816.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
Length = 166
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 73/122 (59%), Gaps = 11/122 (9%)
Query: 1 MLSSMALQST-VNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESL 59
M+SSMAL ST + +F S P +T P + H TKPIS ++++ LA PE+L
Sbjct: 1 MMSSMALSSTSLCSSFI--SQHPKLSITASPP---LFHTQTTKPISVKRKIITLAAPETL 55
Query: 60 TAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAI 119
TAE T T +T TP +T K VK EK R+VLKF+WMEKNIGL LDQ +PG I
Sbjct: 56 TAE--TVTGIDTSDNTPQQTIKV---VKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTI 110
Query: 120 LL 121
L
Sbjct: 111 PL 112
>gi|225452011|ref|XP_002283616.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like isoform 1
[Vitis vinifera]
gi|359488272|ref|XP_003633730.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like isoform 2
[Vitis vinifera]
Length = 176
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 9/121 (7%)
Query: 1 MLSSMALQSTVNGAFTTRSSFP-----SQKLTVKPTKTTILHQNRTKPISRNQRLVALAT 55
M+ SMA+Q N A + + FP + +L K + L+ R+ S N RL A
Sbjct: 1 MMLSMAVQPNPNAALKSYT-FPMSSNRNHRLMFKSSNALSLYSTRSA--STNLRLRASPA 57
Query: 56 PE-SLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIP 114
P ++ E ++ E++ A+P++ +K GV VK +EKPRLVLKFIWMEKNIG+ALDQ+IP
Sbjct: 58 PVVAVAVSEQSSAPQESLSASPLDVEKLGVVVKPMEKPRLVLKFIWMEKNIGVALDQAIP 117
Query: 115 G 115
G
Sbjct: 118 G 118
>gi|296087288|emb|CBI33662.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 9/118 (7%)
Query: 4 SMALQSTVNGAFTTRSSFP-----SQKLTVKPTKTTILHQNRTKPISRNQRLVALATPE- 57
SMA+Q N A + + FP + +L K + L+ R+ S N RL A P
Sbjct: 3 SMAVQPNPNAALKSYT-FPMSSNRNHRLMFKSSNALSLYSTRSA--STNLRLRASPAPVV 59
Query: 58 SLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
++ E ++ E++ A+P++ +K GV VK +EKPRLVLKFIWMEKNIG+ALDQ+IPG
Sbjct: 60 AVAVSEQSSAPQESLSASPLDVEKLGVVVKPMEKPRLVLKFIWMEKNIGVALDQAIPG 117
>gi|145326692|ref|NP_001077793.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
gi|332196696|gb|AEE34817.1| 30S ribosomal protein 3-1 [Arabidopsis thaliana]
Length = 163
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 14/122 (11%)
Query: 1 MLSSMALQST-VNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESL 59
M+SSMAL ST + +F S P +T P + H TKPIS ++++ LA PE+L
Sbjct: 1 MMSSMALSSTSLCSSFI--SQHPKLSITASPP---LFHTQTTKPISVKRKIITLAAPETL 55
Query: 60 TAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAI 119
TAE T T +T TP +T +K EK R+VLKF+WMEKNIGL LDQ +PG I
Sbjct: 56 TAE--TVTGIDTSDNTPQQT------IKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTI 107
Query: 120 LL 121
L
Sbjct: 108 PL 109
>gi|147784271|emb|CAN68341.1| hypothetical protein VITISV_004015 [Vitis vinifera]
Length = 179
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 70/127 (55%), Gaps = 22/127 (17%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTI--------LHQN--------RTKPISRNQ 48
MA QS++N F SSFPSQ + K +KT L Q RTKP + Q
Sbjct: 1 MAAQSSINSTFIC-SSFPSQNPSFKISKTPFPIPLNPKPLFQRSSTXTPGIRTKPSMKLQ 59
Query: 49 RLVALATPESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLA 108
RL A E+ TAE +T P + E +K V VK +E PRLVLKF+WMEKNIG+A
Sbjct: 60 RLAVSAASEARTAEPSTAN-----PISSEENEKVEVIVKVMETPRLVLKFVWMEKNIGVA 114
Query: 109 LDQSIPG 115
LDQ IPG
Sbjct: 115 LDQVIPG 121
>gi|297841583|ref|XP_002888673.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297334514|gb|EFH64932.1| plastid-specific ribosomal protein 3 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 162
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 21 FPSQKLTVKPTKTTILHQNRT-KPISRNQRLVALATPESLTAEEATTTSTETIPATPVET 79
F SQ + T +T L N+T KPIS ++++ LA PE+LTAE T T +T TP +T
Sbjct: 12 FISQHPKLSITASTPLFLNQTTKPISVKRKIITLAAPETLTAE--TVTGIDTSDNTPQQT 69
Query: 80 KKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
K VK EK R+VLKF+WMEKNIGL LDQ +PG I L
Sbjct: 70 TKV---VKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPL 108
>gi|224077158|ref|XP_002305158.1| predicted protein [Populus trichocarpa]
gi|222848122|gb|EEE85669.1| predicted protein [Populus trichocarpa]
Length = 175
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 1 MLSSMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRN-QRLVALATPE-- 57
ML+SMA Q + S+FPSQ L KP KT I + KP + + L L TP
Sbjct: 1 MLASMATQPKIQTHLQP-STFPSQSLLRKPLKTPIF-SIKPKPFCFHLKSLYTLKTPARL 58
Query: 58 SLTAEEATTT--STETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
L+A +A T E T E +K GV VK +EK R+VLKFIWM+K IG+AL+Q IPG
Sbjct: 59 KLSAPKAQQTLPEEEKENETSTEKEKLGVVVKPIEKSRVVLKFIWMQKVIGIALNQVIPG 118
Query: 116 AVAILL 121
I L
Sbjct: 119 HGTIPL 124
>gi|28380123|sp|P82412.1|RRP3_SPIOL RecName: Full=30S ribosomal protein 3, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3;
Short=PSRP-3; Flags: Precursor
gi|7578871|gb|AAF64163.1|AF239218_1 plastid-specific ribosomal protein 3 precursor [Spinacia oleracea]
Length = 179
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 4 SMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNR---TKP----ISRNQRLVALATP 56
SMA+Q +N A S + S KL++KP KT + + P + + P
Sbjct: 3 SMAVQPNIN-AIAKPSIYQSPKLSLKPFKTPAFANPKPFFSSPSFSQLKKKNNWSLFVAP 61
Query: 57 ESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
E+++ + V +K V VK ++KPRLVLKFIWMEKNIGLALDQ+IPG
Sbjct: 62 ETISDVAIMGNEVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPG 120
>gi|449455804|ref|XP_004145640.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis
sativus]
gi|449484535|ref|XP_004156909.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis
sativus]
Length = 192
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 74/143 (51%), Gaps = 37/143 (25%)
Query: 1 MLSSMA--LQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPIS------------- 45
M+ SMA LQ VN F T S+F +Q + KP K + RT S
Sbjct: 1 MMLSMAVQLQPNVNFCFNT-SNFTAQTAS-KPFKLPFAVRQRTTASSCIPNFHTVFGLQL 58
Query: 46 -----RNQRLVALATP--------ESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKP 92
R Q + A A P E L A+++ + S+ PV+ +K GV VK +EKP
Sbjct: 59 RRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSS------PVK-EKLGVVVKPMEKP 111
Query: 93 RLVLKFIWMEKNIGLALDQSIPG 115
RLVLKFIWMEKNIG+ALDQ IPG
Sbjct: 112 RLVLKFIWMEKNIGIALDQMIPG 134
>gi|15242377|ref|NP_197080.1| 30S ribosomal protein 3-2 [Arabidopsis thaliana]
gi|28380137|sp|Q9LFV0.1|RRP32_ARATH RecName: Full=30S ribosomal protein 3-2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3-2;
Short=PSRP-3 2; Flags: Precursor
gi|9755621|emb|CAC01775.1| ribosomal protein 3 precursor-like protein [Arabidopsis thaliana]
gi|26450781|dbj|BAC42499.1| putative ribosomal protein 3 precursor [Arabidopsis thaliana]
gi|28372914|gb|AAO39939.1| At5g15760 [Arabidopsis thaliana]
gi|332004819|gb|AED92202.1| 30S ribosomal protein 3-2 [Arabidopsis thaliana]
Length = 183
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 16/132 (12%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISR--------NQRLV----A 52
MA+Q+ + +F R++ PSQKL+ KP L + KP SR NQ + +
Sbjct: 1 MAVQANQSASFGFRTASPSQKLSSKPIAHISL-STKLKPSSRPSLSCSTWNQGQIPARHS 59
Query: 53 LATPESLTAEEATTTSTETIPAT---PVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLAL 109
P + T + +P + P+ KK V VK LEKP++VLKF+WM+K+IG+AL
Sbjct: 60 CINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVAL 119
Query: 110 DQSIPGAVAILL 121
D IPG I L
Sbjct: 120 DHMIPGFGTIPL 131
>gi|225423933|ref|XP_002279011.1| PREDICTED: 30S ribosomal protein 3-1, chloroplastic-like [Vitis
vinifera]
Length = 146
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 60/111 (54%), Gaps = 23/111 (20%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESLTAEEA 64
MA QS++N F S FPSQ + K KT PI N + + L +
Sbjct: 1 MAAQSSINSTFICYS-FPSQNPSFKIPKTPF-------PIPLNPKPLFLWS--------- 43
Query: 65 TTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
ST+T P + TK V VK +E PRLVLKF+WMEKNIG+ALDQ IPG
Sbjct: 44 ---STDT-PG--IRTKLIEVIVKVMETPRLVLKFVWMEKNIGVALDQVIPG 88
>gi|351723097|ref|NP_001236243.1| uncharacterized protein LOC100306266 [Glycine max]
gi|255628049|gb|ACU14369.1| unknown [Glycine max]
Length = 158
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 58 SLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAV 117
SL+ A TT+ P TP + +K GV VK EKPRLVLKFIWMEKNIG+ALDQ +PG
Sbjct: 45 SLSVSAAETTAFAA-PPTP-QPEKLGVVVKPTEKPRLVLKFIWMEKNIGIALDQMVPGHG 102
Query: 118 AILL 121
I L
Sbjct: 103 TIPL 106
>gi|357501007|ref|XP_003620792.1| 30S ribosomal protein [Medicago truncatula]
gi|217075300|gb|ACJ86010.1| unknown [Medicago truncatula]
gi|355495807|gb|AES77010.1| 30S ribosomal protein [Medicago truncatula]
gi|388491518|gb|AFK33825.1| unknown [Medicago truncatula]
Length = 161
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 35/46 (76%)
Query: 76 PVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
P +++K GV VK +KPRLVLKFIWMEKNIG+ LDQ IPG I L
Sbjct: 63 PPQSQKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPL 108
>gi|297807599|ref|XP_002871683.1| hypothetical protein ARALYDRAFT_488420 [Arabidopsis lyrata subsp.
lyrata]
gi|297317520|gb|EFH47942.1| hypothetical protein ARALYDRAFT_488420 [Arabidopsis lyrata subsp.
lyrata]
Length = 183
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 24/136 (17%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTIL-------------------HQNRTKPIS 45
MA+QS + +F R++ PSQKL+ K L Q T+
Sbjct: 1 MAVQSNQSASFGFRTASPSQKLSSKHVVYISLATKLKYSSLASISCSTWNPGQIPTRHSG 60
Query: 46 RNQRLVALATPESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNI 105
+N + A A P +LT S + P+ KK V VK LEKP++VLKF+WM+K+I
Sbjct: 61 KNPGIFASA-PSNLTFSHEPPESE----SPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDI 115
Query: 106 GLALDQSIPGAVAILL 121
G+ALD IPG I L
Sbjct: 116 GVALDHMIPGFGTIPL 131
>gi|388507154|gb|AFK41643.1| unknown [Lotus japonicus]
Length = 175
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 51 VALATPESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALD 110
+A++ E+ +A A +T + P +K GV VK +KPRLVLKFIWMEKNIG+ALD
Sbjct: 55 LAVSAAETPSAAVAVAEQDDTSLSPP--PQKLGVVVKPTDKPRLVLKFIWMEKNIGIALD 112
Query: 111 QSIPGAVAILL 121
Q++PG I L
Sbjct: 113 QAVPGHGTIPL 123
>gi|388517745|gb|AFK46934.1| unknown [Lotus japonicus]
Length = 175
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 51 VALATPESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALD 110
+A++ E+ +A A +T + P +K GV VK +KPRLVLKFIWMEKNIG+ALD
Sbjct: 55 LAVSAAETPSAAVAVAEQDDTSLSPP--PQKLGVVVKPTDKPRLVLKFIWMEKNIGIALD 112
Query: 111 QSIPGAVAILL 121
Q++PG I L
Sbjct: 113 QAVPGHGTIPL 123
>gi|255580309|ref|XP_002530983.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
gi|223529435|gb|EEF31395.1| Plastid-specific 30S ribosomal protein 3, chloroplast precursor,
putative [Ricinus communis]
Length = 174
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTT---ILHQNRTKPISRNQRLVALATPESLTA 61
MA+Q + + + SQ L +KP K + I Q ++ +S + L T + L
Sbjct: 1 MAIQPKIKSSLKP-VNLTSQTLFLKPLKISTPFISFQPKSSYLSIHSPATTLKTIQDLPK 59
Query: 62 EEATTTSTETI---PATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
+ + ++ ++I +P +K GV VK +EKPR+VLK IWMEK IG+ LDQ IPG
Sbjct: 60 LKLSASAADSILSQEVSPTHKEKLGVVVKPMEKPRIVLKLIWMEKAIGVGLDQVIPG 116
>gi|357163969|ref|XP_003579907.1| PREDICTED: 30S ribosomal protein 3, chloroplastic-like
[Brachypodium distachyon]
Length = 180
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILH----QNRTKPISRNQRLVALATPES-- 58
M++ +R + K P+ +++ H ++R P+ R+ R +A A E+
Sbjct: 4 MSVHPATTATLVSRPRLSAPKSPASPSTSSLPHLVHFKSRRLPL-RSLRGLAAAAVEAEQ 62
Query: 59 ----LTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIP 114
L EE + + VE ++ V+V + + P LVLKFIWMEKNIG+ALDQ +P
Sbjct: 63 SFVGLGEEEPEVGAADADAV--VEGEEYKVAVPERQDPMLVLKFIWMEKNIGIALDQMVP 120
Query: 115 GAVAILL 121
G +I L
Sbjct: 121 GFGSIPL 127
>gi|6136559|sp|O48609.1|RRP3_HORVU RecName: Full=30S ribosomal protein 3, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 3;
Short=PSRP-3; Flags: Precursor
gi|2695931|emb|CAA10984.1| hypothetical protein [Hordeum vulgare subsp. vulgare]
gi|326492988|dbj|BAJ84955.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 181
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 77 VETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
VE+++ V V + + P LVLKFIWMEKNIG+ALDQ +PG +I L
Sbjct: 84 VESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPL 128
>gi|116792964|gb|ABK26571.1| unknown [Picea sitchensis]
gi|116793098|gb|ABK26613.1| unknown [Picea sitchensis]
Length = 211
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 31/44 (70%)
Query: 78 ETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
E KA V VK K R+VLKFIW+EKNIGLALDQ +PG I L
Sbjct: 117 EKNKAKVVVKAPRKQRIVLKFIWLEKNIGLALDQVVPGHGTIPL 160
>gi|115458788|ref|NP_001052994.1| Os04g0461100 [Oryza sativa Japonica Group]
gi|38344967|emb|CAD40987.2| OSJNBa0072F16.12 [Oryza sativa Japonica Group]
gi|113564565|dbj|BAF14908.1| Os04g0461100 [Oryza sativa Japonica Group]
gi|116310450|emb|CAH67455.1| H0219H12.12 [Oryza sativa Indica Group]
gi|125548585|gb|EAY94407.1| hypothetical protein OsI_16175 [Oryza sativa Indica Group]
gi|125590631|gb|EAZ30981.1| hypothetical protein OsJ_15062 [Oryza sativa Japonica Group]
gi|215695522|dbj|BAG90713.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 183
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 78 ETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
E ++ V V + + P LVLKFIWMEKNIG+ALDQ +PG +I L
Sbjct: 87 EAQEYKVKVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPL 130
>gi|149390967|gb|ABR25501.1| plastid-specific 30S ribosomal protein [Oryza sativa Indica Group]
Length = 176
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 78 ETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
E ++ V V + + P LVLKFIWMEKNIG+ALDQ +PG +I L
Sbjct: 80 EAQEYKVKVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPL 123
>gi|90657548|gb|ABD96848.1| hypothetical protein [Cleome spinosa]
Length = 182
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 30/42 (71%)
Query: 80 KKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
KK VK LEKPRLVLKF+WM+K+IG+ LDQ + G I L
Sbjct: 89 KKLRAVVKPLEKPRLVLKFLWMQKDIGIGLDQMVDGYGTIPL 130
>gi|242073370|ref|XP_002446621.1| hypothetical protein SORBIDRAFT_06g019030 [Sorghum bicolor]
gi|241937804|gb|EES10949.1| hypothetical protein SORBIDRAFT_06g019030 [Sorghum bicolor]
Length = 180
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 72 IPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
+ A E + V V + + P LVLKFIWMEKNIG+ALDQ +PG +I L
Sbjct: 78 VDAVDEEEAENKVVVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPL 127
>gi|212722148|ref|NP_001132530.1| uncharacterized protein LOC100193993 [Zea mays]
gi|194694650|gb|ACF81409.1| unknown [Zea mays]
gi|195604602|gb|ACG24131.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
gi|195605154|gb|ACG24407.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
gi|413918560|gb|AFW58492.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
Length = 177
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 71 TIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
++ A E + V V + + P LVLKFIWMEKNIG+ALDQ +PG +I L
Sbjct: 74 SVNAVDEEEAENKVVVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPL 124
>gi|383129941|gb|AFG45706.1| hypothetical protein 0_5104_02, partial [Pinus taeda]
Length = 121
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 27/35 (77%)
Query: 81 KAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
KA V VK RLVLKFIW+EKNIGLALDQ +PG
Sbjct: 30 KAKVVVKAPRNQRLVLKFIWLEKNIGLALDQVVPG 64
>gi|226528607|ref|NP_001148519.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
gi|195619976|gb|ACG31818.1| plastid-specific 30S ribosomal protein 3 [Zea mays]
Length = 178
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 72 IPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
+ A E + V V + + P LVLKFIWMEKNIG+ALDQ +PG +I L
Sbjct: 76 VDAVDEEEAENKVVVPERQDPMLVLKFIWMEKNIGIALDQLVPGYGSIPL 125
>gi|168052440|ref|XP_001778658.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669976|gb|EDQ56553.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 20 SFPSQKLTVKPTKTTILHQNRTKPI--SRNQRLVALATPESLTAEEATTTSTETIPATPV 77
+F + KP + Q+ SR QRL A+ E+ +E +
Sbjct: 60 AFQGAAVVAKPLRVCRRRQDDGVEFLQSRMQRLSVKASAEAAESEMVLNKPQGS------ 113
Query: 78 ETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
KK V+V +K R++L+F+W+EKNIG+ LDQ +PG
Sbjct: 114 -GKKKKVAVAAPKKQRVLLRFLWLEKNIGIGLDQVVPG 150
>gi|116784544|gb|ABK23386.1| unknown [Picea sitchensis]
gi|116786074|gb|ABK23962.1| unknown [Picea sitchensis]
Length = 205
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 91 KPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
K R+VLKFIW+EKNIGLALDQ +PG I L
Sbjct: 124 KQRVVLKFIWLEKNIGLALDQVVPGHGTISL 154
>gi|148907868|gb|ABR17057.1| unknown [Picea sitchensis]
Length = 205
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 91 KPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
K R+VLKFIW+EKNIGLALDQ +PG I L
Sbjct: 124 KQRVVLKFIWLEKNIGLALDQVVPGHGTISL 154
>gi|302758326|ref|XP_002962586.1| hypothetical protein SELMODRAFT_165619 [Selaginella moellendorffii]
gi|300169447|gb|EFJ36049.1| hypothetical protein SELMODRAFT_165619 [Selaginella moellendorffii]
Length = 184
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 55 TPESLTAEEATTTSTETIPA------TPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLA 108
TP+++ EE + + E P + +KK ++++ K L L+F+WMEKNIG+A
Sbjct: 61 TPKAVGDEEDSKDAQEETPEPTSSVYSDNLSKKDKLAIRSAGKQILSLRFLWMEKNIGIA 120
Query: 109 LDQSIPGAVAILL 121
LDQ +PG I L
Sbjct: 121 LDQVVPGHGTIPL 133
>gi|414586872|tpg|DAA37443.1| TPA: plastid-specific 30S ribosomal protein 3, mRNA isoform 1 [Zea
mays]
gi|414586873|tpg|DAA37444.1| TPA: hypothetical protein ZEAMMB73_159189 [Zea mays]
Length = 82
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 23/26 (88%)
Query: 94 LVLKFIWMEKNIGLALDQSIPGAVAI 119
LVLKFIWMEKNIG+ALDQ +PG +I
Sbjct: 2 LVLKFIWMEKNIGIALDQLVPGYGSI 27
>gi|168003682|ref|XP_001754541.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694162|gb|EDQ80511.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 108
Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 24/26 (92%)
Query: 90 EKPRLVLKFIWMEKNIGLALDQSIPG 115
+K R++L+F+W+EKNIG+ALDQ +PG
Sbjct: 26 KKQRVLLRFLWLEKNIGIALDQVVPG 51
>gi|302797480|ref|XP_002980501.1| hypothetical protein SELMODRAFT_112322 [Selaginella moellendorffii]
gi|300152117|gb|EFJ18761.1| hypothetical protein SELMODRAFT_112322 [Selaginella moellendorffii]
Length = 93
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 80 KKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
+K ++++ K L L+F+WMEKNIG+ALDQ +PG
Sbjct: 1 QKDKLAIRSAGKQILSLRFLWMEKNIGIALDQVVPG 36
>gi|297737841|emb|CBI27042.3| unnamed protein product [Vitis vinifera]
Length = 85
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 80 KKAGVSVKQLEKPRLVLKFIWMEKNIG 106
+K V VK +E PRLVLKF+WMEKNIG
Sbjct: 27 QKVEVIVKVMETPRLVLKFVWMEKNIG 53
>gi|77744778|gb|ABB02337.1| Ycf65 [Euglenaria anabaena]
Length = 105
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 19/21 (90%)
Query: 93 RLVLKFIWMEKNIGLALDQSI 113
R +LKF+W+EK+IG+ALDQ +
Sbjct: 3 RFILKFLWLEKSIGVALDQKV 23
>gi|156741774|ref|YP_001431903.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
13941]
gi|156233102|gb|ABU57885.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
13941]
Length = 1171
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 18 RSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESLTAEEATTTSTETIPATPV 77
RS+ Q++ +P TT+ RT P+SR +R+ A+ ATT T V
Sbjct: 408 RSTHWMQRMGKRPPATTLNLDERTLPLSRKERIYAIYGA-------ATTLYTFLAIIGAV 460
Query: 78 ETKKAGVSVKQLEKPRL-VLKFIWMEKNIGLALDQSI--PGAVAILLLSW 124
+ +Q+ +P L +L+ IW ++ IG+AL ++ P +AILL W
Sbjct: 461 WFWQ-----QQILEPALELLRGIWWQRLIGMALILTVVLPAVIAILLAFW 505
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.125 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,791,131,116
Number of Sequences: 23463169
Number of extensions: 60034803
Number of successful extensions: 225419
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 224262
Number of HSP's gapped (non-prelim): 1200
length of query: 131
length of database: 8,064,228,071
effective HSP length: 97
effective length of query: 34
effective length of database: 10,083,267,974
effective search space: 342831111116
effective search space used: 342831111116
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 71 (32.0 bits)